BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.15
(268 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer... 40 0.005
MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC ... 39 0.010
GAR2_SCHPO (P41891) Protein gar2 38 0.030
SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4 37 0.050
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre... 36 0.086
VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogeni... 36 0.11
VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral... 35 0.15
VE2_HPV19 (P36786) Regulatory protein E2 35 0.19
SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory eleme... 35 0.25
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 35 0.25
VE2_HPV5B (P26545) Regulatory protein E2 34 0.33
PCK2_SCHPO (P36583) Protein kinase C-like 2 (EC 2.7.1.-) 34 0.33
SR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Enhancer... 34 0.43
SFR7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Spl... 34 0.43
SFR8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Sup... 33 0.56
SCAB_XENLA (P51169) Amiloride-sensitive sodium channel beta-subu... 33 0.56
RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication fac... 33 0.56
HAM1_MYCLE (P52063) HAM1 protein homolog 33 0.56
CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8) (Pep... 33 0.56
VE2_HPV25 (P36787) Regulatory protein E2 33 0.73
>NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer
cells cyclophilin-related protein) (NK-TR protein)
Length = 1462
Score = 40.4 bits (93), Expect = 0.005
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 30/212 (14%)
Query: 37 DSPPESFWLSKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSL-NLKSR--IIGLPK 93
DSPP S W K + W YER + K T+ +SL N+K K
Sbjct: 612 DSPPPSRW--KPGQKPW---KPSYERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHK 666
Query: 94 PQKPSFTDAK-----NRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSK 148
+K S +D + R+ + + RS S ++S T S S R RS
Sbjct: 667 REKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSYTR----SRSLASSHSRSRSP 722
Query: 149 RDRSRSR---SLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDS 205
RS SR S + SR SS + + GR ++ R R+ SG++ + S
Sbjct: 723 SSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKR-----RLRS---SGKKNSVSHKKHS 774
Query: 206 AAEDSTVTNSVVKARDSTASVNDASFAESISS 237
++ + T+ + VK RD ++ V ++ES SS
Sbjct: 775 SSSEKTLHSKYVKGRDRSSCVR--KYSESRSS 804
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)
[Contains: Micronuclear linker histone-alpha;
Micronuclear linker histone-beta; Micronuclear linker
histone-delta; Micronuclear linker histone-gamma]
Length = 633
Score = 39.3 bits (90), Expect = 0.010
Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 3/183 (1%)
Query: 62 RKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPK-R 120
R S K S S NS N S + + +KN+++ + R
Sbjct: 239 RSSSRKASNSKGRKNSTSNKRNSSSSSKRSSSSKNKKSSSSKNKKSSSSKGRKSSSSRGR 298
Query: 121 SVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRK 180
S +K+ S S GR S +S R RKSS G ++ RK
Sbjct: 299 KASSSKNRKSSKSKDRKSSSSKGRKSSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQERK 358
Query: 181 HGFFERFRAIFRSGRRKKAHRETDSAAEDSTVT--NSVVKARDSTASVNDASFAESISSE 238
+ + + + G++++ + E S + NS+ +AR A+ AS A S+
Sbjct: 359 NSHADTSKQMEDEGQKRRQSSSSAKRDESSKKSRRNSMKEARTKKANNKSASKASKSGSK 418
Query: 239 PPG 241
G
Sbjct: 419 SKG 421
Score = 31.6 bits (70), Expect = 2.1
Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 27/228 (11%)
Query: 62 RKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRS 121
+ S+K SS + + S + R K QK + + ++ N K N + S
Sbjct: 202 KSTSSKRRADSSASQGRSQSSSSNRRKASSSKDQKGTRSSSRKASNSKGRKNSTSNKRNS 261
Query: 122 VSVTKSVTSH----AEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRI 177
S +K +S + S K S + R K SR R +RKSS ++
Sbjct: 262 SSSSKRSSSSKNKKSSSSKNKKSSSSKGR-KSSSSRGRKASSSKNRKSSKSKDRKSSSSK 320
Query: 178 GRKHGFFERF------------------RAIFRSGRRKKAHRETDSAAEDS----TVTNS 215
GRK + R +S RK +H +T ED ++S
Sbjct: 321 GRKSSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQERKNSHADTSKQMEDEGQKRRQSSS 380
Query: 216 VVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWGVGESE 263
K +S+ S E+ + + SG +S+ +S+
Sbjct: 381 SAKRDESSKKSRRNSMKEARTKKANNKSASKASKSGSKSKGKSASKSK 428
>GAR2_SCHPO (P41891) Protein gar2
Length = 500
Score = 37.7 bits (86), Expect = 0.030
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 91 LPKPQKPS-FTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKR 149
+ KP K T + K + + PK+S K +S EPS V + + K
Sbjct: 23 IEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASS-PEPSKKSVKKQKKSKKKE 81
Query: 150 D-----RSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETD 204
+ S S S +S S + E+ I ++ +K++ E+
Sbjct: 82 ESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESS 141
Query: 205 SAAEDSTVTNSVVKARDSTASVNDASFAESISSE 238
S++E +VVK + S +D+S +ES SSE
Sbjct: 142 SSSESEEEEEAVVKIEEKKESSSDSS-SESSSSE 174
>SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4
Length = 489
Score = 37.0 bits (84), Expect = 0.050
Identities = 54/188 (28%), Positives = 74/188 (38%), Gaps = 15/188 (7%)
Query: 57 NALYERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKL 116
N R S S S S +++ N S G K PS D+K+R + +
Sbjct: 254 NKSRSRSRSPDKSRSKSKDHAEDKLQNNDSA--GKAKSHSPSRHDSKSRSRSQ---ERRA 308
Query: 117 FPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSID---AGEEN 173
+R SV+++ + S K R RS R RSRSRS R RK S D + +
Sbjct: 309 EEERRRSVSRARSQEKSRSQEKSLLKSRSRS-RSRSRSRSKDKRKGRKRSRDESRSRSRS 367
Query: 174 PGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARD--STASVNDASF 231
RKH +R + S K ++TD + S SV K R+ S S
Sbjct: 368 KSERSRKHS-SKRDSKVSSSSSSSKKKKDTDHSRSPS---RSVSKEREHAKAESGQRGSR 423
Query: 232 AESISSEP 239
AE S P
Sbjct: 424 AEGESEAP 431
>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
(Pre-mRNA splicing factor SRP75) (SRP001LB)
Length = 494
Score = 36.2 bits (82), Expect = 0.086
Identities = 52/254 (20%), Positives = 92/254 (35%), Gaps = 43/254 (16%)
Query: 46 SKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNR 105
S+ H + + RK ++ +S S+ + R SR + + S + +K
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKE 245
Query: 106 RNHKPCNNIKLFPKRSVSVTKS---------VTSHAEPSSPKVSCMGRVRSK-RDRSRSR 155
++ P S ++S + ++ PK R +SK + RSRS+
Sbjct: 246 KSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQ 305
Query: 156 SLRLRNSRKSSIDAGE-------ENPGRIGRKHGFFERFRAIFRSGR----RKKAHRETD 204
R+ ++ S+ G ++ R K G R R+ +S RK++ E+
Sbjct: 306 ERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESR 365
Query: 205 S---------------AAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFA 249
S + DS +S K ++ T S + S+S E A
Sbjct: 366 SRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKE-------REHA 418
Query: 250 SGRRSESWGVGESE 263
S+ G GESE
Sbjct: 419 KSESSQREGRGESE 432
>VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogenin)
[Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII); YGP40]
Length = 1850
Score = 35.8 bits (81), Expect = 0.11
Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 30/232 (12%)
Query: 25 LANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSLNL 84
+ANKT P+ P + E D + S+SSS +++ S +
Sbjct: 1092 VANKTRHPKNRPSKKGNTVLAEFGTEPD------------AKTSSSSSSASSTATSSSSS 1139
Query: 85 KSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGR 144
+ KP D + +K ++ K S S +K +S + SS + S
Sbjct: 1140 SASSPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNS-SKRSSSKSSNSSKRSSSSSS 1198
Query: 145 VRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETD 204
S RS S S ++ KSS + + + S R + + + +
Sbjct: 1199 SSSSSSRSSSSSSSSSSNSKSSSSSSKSSSS-----------------SSRSRSSSKSSS 1241
Query: 205 SAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSES 256
S++ S+ ++S + S++S + +S S S L G +S RS S
Sbjct: 1242 SSSSSSSSSSSKSSSSRSSSSSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVS 1293
>VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral
calyx protein)
Length = 252
Score = 35.4 bits (80), Expect = 0.15
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 120 RSVSVTKSVTSHAEPSSPKVSCMGRVRSK-RDRSRSRSLRLRNSRKSSIDAGEE 172
RS S ++S + H P S C R RS+ R RSRSRS R R+ DA E+
Sbjct: 105 RSRSRSRSRSPHCRPRSRSPHCRPRSRSRSRSRSRSRSSSPRRGRRQIFDALEK 158
>VE2_HPV19 (P36786) Regulatory protein E2
Length = 493
Score = 35.0 bits (79), Expect = 0.19
Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 18/180 (10%)
Query: 13 GGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALYERKEST------ 66
GG D + +T TD R + S+++ + YER+ S+
Sbjct: 208 GGQRDPNTSSKTPTTTTDSASRLSPTA------SREQSQQTNTKGRRYERRPSSRTRRQT 261
Query: 67 ----KGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSV 122
K S S S + S+ S +L S K ++ + T R + + RS
Sbjct: 262 QTRQKRSRSKSKSRSRSRSRSLSSNRRSRSKSRRKASTTRGRGRGSPTATSDQ--SSRSP 319
Query: 123 SVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHG 182
S T S TS S +V RS+ RSR R R R S + R HG
Sbjct: 320 SATSSTTSLRSRGSSRVGRSRGGRSRVGRSRGRGKRSRESPSPTNTKRSRRQSGSSRLHG 379
Score = 30.4 bits (67), Expect = 4.7
Identities = 53/214 (24%), Positives = 84/214 (38%), Gaps = 37/214 (17%)
Query: 61 ERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRR-NHKPCNNIK---- 115
+R +T T ++TT+S SR+ ++ T+ K RR +P + +
Sbjct: 210 QRDPNTSSKTPTTTTDSA-------SRLSPTASREQSQQTNTKGRRYERRPSSRTRRQTQ 262
Query: 116 LFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPG 175
KRS S +KS S + S + R +S+R S +R R R S ++ D +P
Sbjct: 263 TRQKRSRSKSKS-RSRSRSRSLSSNRRSRSKSRRKASTTRG-RGRGSPTATSDQSSRSPS 320
Query: 176 --------------RIGRKHGFFERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARD 221
R+GR G R + RS R K RE+ S TN+ R
Sbjct: 321 ATSSTTSLRSRGSSRVGRSRGGRSR---VGRSRGRGKRSRESPSP------TNTKRSRRQ 371
Query: 222 STASVNDASFAESISSEPPGLGGMMRFASGRRSE 255
S +S A+++ + + G GR E
Sbjct: 372 SGSSRLHGVSADAVGTSVHTVSGRNTGRLGRLLE 405
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory
element-binding protein) (NRE-binding protein) (DBP-5)
(Bax antagonist selected in saccharomyces 1) (BASS1)
Length = 2426
Score = 34.7 bits (78), Expect = 0.25
Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 17/198 (8%)
Query: 65 STKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSV 124
S+ +S +++ ++ + ++ + K + K + K ++++ KRS S
Sbjct: 1773 SSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSS 1832
Query: 125 ---TKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRS-LRLRNSRKSSIDAGEENPGRIGRK 180
++ TS + + K S + + RSRSRS R R+SR S G + + RK
Sbjct: 1833 EHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRK 1892
Query: 181 HGFFERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPP 240
RS + + RE S V+AR T S S S
Sbjct: 1893 -----------RSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSR 1941
Query: 241 GLGGMMRF--ASGRRSES 256
+G F + RRS +
Sbjct: 1942 SVGRRRSFSISPSRRSRT 1959
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 34.7 bits (78), Expect = 0.25
Identities = 45/169 (26%), Positives = 65/169 (37%), Gaps = 17/169 (10%)
Query: 44 WL-SKDEEHDWFDRNAL------YERKESTKGSTSSSTTNSQRFSLNLKSRIIGL---PK 93
WL DEE D D N L +R+ + K SS T + +L RI+ + PK
Sbjct: 545 WLVDNDEELDTIDVNELDSYKTIEDRRRALKAWHSSKTPSVMIIGYDL-FRILTVEDDPK 603
Query: 94 PQKPSFTDAKNRRNHKPCNNIKLF---PKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRD 150
+KP +NRR K + + + P + V S CM ++ +KR
Sbjct: 604 KKKPK---NRNRRLEKAKEDFRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRR 660
Query: 151 RSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKA 199
+ + N + PG +G K F RF I GR K A
Sbjct: 661 ICLTGTPLQNNLMEYHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDA 709
>VE2_HPV5B (P26545) Regulatory protein E2
Length = 514
Score = 34.3 bits (77), Expect = 0.33
Identities = 58/254 (22%), Positives = 91/254 (34%), Gaps = 31/254 (12%)
Query: 7 LVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALYERKEST 66
+ S+ GS R+ +T A DS SK + R Y R+ S+
Sbjct: 198 VTSSTPPGSPGRQADTDTTAKTPTTSTTAVDSTSRQLTTSKQPQQTE-TRGRRYGRRPSS 256
Query: 67 KGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTK 126
K S + R +SR K Q + R+ SV T+
Sbjct: 257 KSRRSQTQQRRSRSRHRSRSRSRSRSKSQTHTTWSTTRSRS------------TSVGKTR 304
Query: 127 SVTSHAEPS--SPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFF 184
++TS + SP G RS R RSRS S + + S A E+P G +
Sbjct: 305 ALTSRSRSRGRSPSTCRRGGGRSPRRRSRSPSTYSSCTTQRSQRARAESPTTRGARGS-- 362
Query: 185 ERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGG 244
R R GR ++ R + S++ + ++R +A + S P +GG
Sbjct: 363 RGSRGGSRGGRLRRRGRSSSSSSP------AHKRSRGGSAKLRGVS--------PGEVGG 408
Query: 245 MMRFASGRRSESWG 258
+R S + + G
Sbjct: 409 SLRSVSSKHTGRLG 422
>PCK2_SCHPO (P36583) Protein kinase C-like 2 (EC 2.7.1.-)
Length = 1016
Score = 34.3 bits (77), Expect = 0.33
Identities = 28/101 (27%), Positives = 43/101 (41%), Gaps = 5/101 (4%)
Query: 56 RNALYERKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRR--NHKPCNN 113
R E++ S KG S+ +QR S+ L S + + KP+ TD N N
Sbjct: 302 RRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPES---TDRPNTASGNQSVSAW 358
Query: 114 IKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRS 154
L P +++T + T H P + +GR + R R S
Sbjct: 359 FSLEPMGQINLTMNFTKHNTRKRPMDAGLGRQGAIRQRKES 399
>SR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Enhancer of
deformed) (52-kDa bracketing protein) (B52 protein)
Length = 375
Score = 33.9 bits (76), Expect = 0.43
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 62 RKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRS 121
R S + S S +T+S+ S + G K + P K+R + +N R
Sbjct: 215 RSRSRRRSRSRRSTHSRSKSRSRSKSRGGRSKSKSP----VKSRSRSRSASN----KSRD 266
Query: 122 VSVTKSVT-SHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSS 166
VS +KS + S P SPK R + RSRSRS+ R SR S
Sbjct: 267 VSKSKSKSHSRTAPVSPK-------RERDSRSRSRSVSKRESRSRS 305
Score = 31.6 bits (70), Expect = 2.1
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 143 GRVRSKRDRSRSRSLRLRNSRKS------SIDAGEENPGRIGRKHGFFERFRAIFRSGRR 196
GR RS RSRSRS R SR+S S + GR K R R+ S +
Sbjct: 205 GRSRSSSSRSRSRSRRRSRSRRSTHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSASNKS 264
Query: 197 KKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESIS 236
+ + + S + T S + RDS + S ES S
Sbjct: 265 RDVSK-SKSKSHSRTAPVSPKRERDSRSRSRSVSKRESRS 303
>SFR7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8)
Length = 238
Score = 33.9 bits (76), Expect = 0.43
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 31 PPERHPDSPPESFWLSKDEEHDWFDRNALYERKESTKGSTSSSTTNSQRFSLNLKSRIIG 90
PP R P P + + ++ H +D + R+ S S S S + +R+S + +SR G
Sbjct: 94 PPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRS-RSRSRG 152
Query: 91 LPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRD 150
A RR+ +I L RS S+ +S + + S S R
Sbjct: 153 RRS------RSASPRRS----RSISLRRSRSASLRRSRSGSIKGSRYFQS------PSRS 196
Query: 151 RSRSRSL-RLRNSRKSS 166
RSRSRS+ R R+SR S
Sbjct: 197 RSRSRSISRPRSSRSKS 213
>SFR8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8
(Suppressor of white apricot protein homolog)
Length = 951
Score = 33.5 bits (75), Expect = 0.56
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 1/129 (0%)
Query: 94 PQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSR 153
P + + K +++ K PK S SH++ S VR R RSR
Sbjct: 748 PPREEEKEKKKKKHKKRSRTRSRSPKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSR 807
Query: 154 SRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAAEDSTVT 213
S R + + + R+ R G R R RS KK R + S + +
Sbjct: 808 SPRRRAHSPERRREERSVPTAYRVSRSPG-ASRKRTRSRSPHEKKKKRRSRSRTKSKARS 866
Query: 214 NSVVKARDS 222
SV ++ +
Sbjct: 867 QSVSPSKQA 875
>SCAB_XENLA (P51169) Amiloride-sensitive sodium channel beta-subunit
(Epithelial Na+ channel beta subunit) (Beta ENaC)
(Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
(Beta NaCH)
Length = 647
Score = 33.5 bits (75), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 51 HDWFDRNALYERKESTKGSTSSSTTNSQRFSLNLK 85
H+ FD NA+Y + S + S+ T+ SQR+ + +K
Sbjct: 179 HNIFDNNAVYSKNSSIRNSSEDQTSYSQRYKVAMK 213
>RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication factor
C large subunit) (A1 140 kDa subunit) (RF-C 140 kDa
subunit) (Activator 1 large subunit) (DNA-binding
protein PO-GA)
Length = 1148
Score = 33.5 bits (75), Expect = 0.56
Identities = 45/218 (20%), Positives = 83/218 (37%), Gaps = 37/218 (16%)
Query: 27 NKTDPPERHPDSP---------PESFWLSKDEEHDWFDRNALYERKESTKGSTSSSTTNS 77
N PPE+ P S P ++ DEE D+ + A + KE+ + +TNS
Sbjct: 81 NAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDDFMCKKAASKSKENGR------STNS 134
Query: 78 QRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSP 137
+ N+K + + +KP + IKL P + T + S+
Sbjct: 135 HLGTSNMKK-------------NEENTKTKNKPLSPIKLTPTSVLDYFG--TGSVQRSNK 179
Query: 138 KVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRK 197
K+ R ++ S +++ +D E ++ F + + K
Sbjct: 180 KMVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTK 239
Query: 198 KAHRETDSAAEDSTVTNSVVKA-------RDSTASVND 228
KA ++T++ S+V ++ KA + TA V+D
Sbjct: 240 KARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVSD 277
>HAM1_MYCLE (P52063) HAM1 protein homolog
Length = 208
Score = 33.5 bits (75), Expect = 0.56
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 214 NSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGRRSESWG 258
N++ KARD+ A+ AS A+ E LGGM S R S S+G
Sbjct: 56 NALAKARDAFAATGLASVADDSGLEAAALGGMPGVLSARWSGSYG 100
>CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8)
(Peptidylprolyl cis-trans isomerase 1) (PPIase 1)
(Cyclophilin) (BmCYP-1)
Length = 843
Score = 33.5 bits (75), Expect = 0.56
Identities = 61/283 (21%), Positives = 105/283 (36%), Gaps = 35/283 (12%)
Query: 2 QQAETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALYE 61
Q + +V G RK + KTD R + + E+ D R
Sbjct: 555 QDKDQIVERDTGSKQRRKSDSKEHRGKTDRKHRSKSIEEDGRRSTSREKLDDLKRKETSG 614
Query: 62 RK------ESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIK 115
+K ++ + T+ +NS +++ ++ + K + + +++ K +
Sbjct: 615 QKSQADSEQTVEAKTNVVDSNSDNSKMSVNGKLKEVSSTNKEN--EVSEQKDLKAESTKS 672
Query: 116 LFPKRSVS-VTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENP 174
K+ V+ V++ +P K + R RS+R RSRS R R+S + S +
Sbjct: 673 EEIKQQVNEVSRKQKGGEKPKEHKRN--ERSRSRRRRSRSNGRRRRSSSRRSRSRDRRHK 730
Query: 175 GRIGRKHGFFERFRAIFRSG------------RRKKAHRETDSAAEDSTVTNSVVKARDS 222
R R G+ RF RS RR++ R + D T S RDS
Sbjct: 731 SR-SRSRGYVRRFEGWSRSRRPTRRELYDERMRRERERRRSFDRYSDRRRTRSRSARRDS 789
Query: 223 ---------TASVNDASFAESISSEPPGLGGMMRFASGRRSES 256
+ + +S +ES SS+ AS +RS S
Sbjct: 790 DRHSRRSRKRSPSSSSSSSESSSSDSRSTASSS--ASSKRSSS 830
>VE2_HPV25 (P36787) Regulatory protein E2
Length = 502
Score = 33.1 bits (74), Expect = 0.73
Identities = 34/129 (26%), Positives = 52/129 (39%), Gaps = 6/129 (4%)
Query: 125 TKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFF 184
TK PSS + R +R RS+SRS R R+ +S I + + R
Sbjct: 242 TKGRRYERRPSSRTRRQQAQARQRRSRSKSRS-RSRSQSRSRIRSRSRSR---SRSESQS 297
Query: 185 ERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGG 244
+ R+ RS R+ A R + +T ++ ++ +T+S S S GG
Sbjct: 298 SKRRSRSRSRRKTSATRGRGPGSPTTTTSDRAARSPSTTSSATSQRSQRSRSRAGSSRGG 357
Query: 245 MMRFASGRR 253
R GRR
Sbjct: 358 --RGRGGRR 364
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.126 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,475,542
Number of Sequences: 164201
Number of extensions: 1172729
Number of successful extensions: 3116
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 3045
Number of HSP's gapped (non-prelim): 103
length of query: 268
length of database: 59,974,054
effective HSP length: 108
effective length of query: 160
effective length of database: 42,240,346
effective search space: 6758455360
effective search space used: 6758455360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0010.15