BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.11
(1573 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 527 e-148
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 456 e-127
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 209 6e-53
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 165 1e-39
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 144 2e-33
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 122 1e-26
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 117 2e-25
YMD9_YEAST (Q03434) Transposon Ty1 protein B 115 9e-25
YMU0_YEAST (Q04670) Transposon Ty1 protein B 113 4e-24
YJZ9_YEAST (P47100) Transposon Ty1 protein B 113 5e-24
YJZ7_YEAST (P47098) Transposon Ty1 protein B 112 8e-24
YME4_YEAST (Q04711) Transposon Ty1 protein B 112 1e-23
YMT5_YEAST (Q04214) Transposon Ty1 protein B 109 5e-23
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 72 2e-11
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 3e-05
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 50 6e-05
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 49 8e-05
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 49 1e-04
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 49 1e-04
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 49 1e-04
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 527 bits (1357), Expect = e-148
Identities = 367/1110 (33%), Positives = 534/1110 (48%), Gaps = 108/1110 (9%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGN-DQVYMGNGQGLPIQSIGSASFSSPIHTQTTLL 527
W D+ A+HH T V G+ V MGN I IG + + TL+
Sbjct: 294 WVVDTAASHHATPVRDLFC--RYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGC--TLV 349
Query: 528 LKNLLLVPNITKNLVSVSKFAQDN-GVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSF 586
LK++ VP++ NL+S +D YF + T S K + RG+L
Sbjct: 350 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEIC 409
Query: 587 DGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYE 646
G N + DLWH R+GH +
Sbjct: 410 QG----------------------------------ELNAAQDEISVDLWHKRMGHMSEK 435
Query: 647 ALQSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIE 706
LQ I + C C K HR+ SS L+L+++D+ GP IE
Sbjct: 436 GLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIE 495
Query: 707 SSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF 766
S G YF+T +D SR W+Y+LK K + VF +F A+VE + G K+K +++D G E+
Sbjct: 496 SMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEY 555
Query: 767 --KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
+ + GI H T P T NG ER +R IVE S+L A +P S+W A
Sbjct: 556 TSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQ 615
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
TA +LINR P+ L P Y L+VFG + H+ +KL +S C+
Sbjct: 616 TACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCI 675
Query: 885 FLGYSSSHKGYKCLAS-DGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVIS 943
F+GY GY+ ++ S+DV F E + + S + + +IP
Sbjct: 676 FIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVK-------NGIIPNFV 728
Query: 944 YVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNAVSS 1003
+PS N+P SA + ++ + G +
Sbjct: 729 TIPSTS---------------------------NNPT-SAESTTDEVSEQGEQPGEVIEQ 760
Query: 1004 TSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPT----LLLAQAEP 1059
D + T G Q Q + R++ V+ R P+ L+ EP
Sbjct: 761 GEQLDE--GVEEVEHPTQGEEQHQPLR-------RSERPRVESRRYPSTEYVLISDDREP 811
Query: 1060 VTTKHALKDPT---WMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSV 1116
+ K L P M AM+ E ++L N T+ LV LPKG+ P+ CKWVF++K++ D +
Sbjct: 812 ESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKL 871
Query: 1117 NRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGA 1176
RYKARLV KG+ Q KG D+ E FSPVVK +IR IL+LA S + QLDV AFLHG
Sbjct: 872 VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGD 931
Query: 1177 LQEEVYMQQPAGFQNSDKT-LVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPS 1235
L+EE+YM+QP GF+ + K +VCKLNK+LYGLKQAPR W+ + + + + + DP
Sbjct: 932 LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 991
Query: 1236 L-FTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQ-VH 1293
+ F +++N I +L+YVDD++I G I ++ L+ F +K LG LG++ V
Sbjct: 992 VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1051
Query: 1294 HLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSD------PTLY 1347
R L L+Q KYI +LER +M AK +STP+ +LSK + Y
Sbjct: 1052 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPY 1111
Query: 1348 RSIVGALQYATL-TRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPC 1406
S VG+L YA + TRP+I+ +V V +FL P +EHW+AVK ILRYL+GT L C
Sbjct: 1112 SSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL----C 1167
Query: 1407 SLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSL 1466
S L Y DAD D D+R+S++G F ++W SK Q VA S+TEAEY +
Sbjct: 1168 FGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAA 1227
Query: 1467 ANTSAELLWIQSLLQELQVPFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKV 1526
T E++W++ LQEL + V+CD+ A+ L+ N + H RTKH+++ ++RE V
Sbjct: 1228 TETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMV 1287
Query: 1527 QNQSLFVHHVPSVDQIADIFTKALSPTRFE 1556
++SL V + + + AD+ TK + +FE
Sbjct: 1288 DDESLKVLKISTNENPADMLTKVVPRNKFE 1317
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 456 bits (1172), Expect = e-127
Identities = 342/1170 (29%), Positives = 558/1170 (47%), Gaps = 138/1170 (11%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNL 531
DSGA+ H+ +D S +D + V ++ + QG I + + + L+++
Sbjct: 292 DSGASDHLINDESLYTDSVEVVPPLKIAVAK-QGEFIYATKRGIVR--LRNDHEITLEDV 348
Query: 532 LLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHS 591
L NL+SV + Q+ G+ EF T++ G L + + +F
Sbjct: 349 LFCKEAAGNLMSVKRL-QEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVINFQAYSI 407
Query: 592 SNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL--- 648
+ HK NN + LWH R GH L
Sbjct: 408 NAKHK----------------------------NN------FRLWHERFGHISDGKLLEI 433
Query: 649 --------QSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSA--SSTLYTAPLELIFAD 698
QS L ++ IC C K RLP T PL ++ +D
Sbjct: 434 KRKNMFSDQSLLNNLELSCE------ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSD 487
Query: 699 LWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSV 758
+ GP + + +YF+ VD F+ + YL+K KS+ ++F F A E F LK+ +
Sbjct: 488 VCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYL 547
Query: 759 QTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
D G E+ + +K GI++ LT PHT NG ER R I E ++++ A +
Sbjct: 548 YIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDK 607
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLS--PYHKLFKVPADYKILRVFGSACYPHLRPYNSS 874
S+W A LTAT+LINR+P+ L + S PY K LRVFG+ Y H++
Sbjct: 608 SFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQG 666
Query: 875 KLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKF------PYSTLF---- 923
K +S + +F+GY + G+K A + + +++DV +E + T+F
Sbjct: 667 KFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDS 724
Query: 924 ----SSEFPASNPSSVSSVIPVISY----VPSLQQPIPSPHHSHPTGISS------PNS- 968
+ FP + + + P S + L+ S + + P PN
Sbjct: 725 KESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNES 784
Query: 969 --VDSLQSMPNSPVHSAATVSEHPA---------ASGTVSPNAVSSTSSSDHFASASSIP 1017
D++Q + +S + ++E + G+ +PN + +++H
Sbjct: 785 KECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEI---- 840
Query: 1018 ATTTGSSQPQQVTNVHPMQTRAKSGIVKPR---------LLPTLLLAQAEPVTTKHALKD 1068
G P + + + R++ KP+ L +L A ++ +
Sbjct: 841 ----GIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDE 896
Query: 1069 -------PTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKA 1121
+W A+ +E +A NNTWT+ P+ ++ + +WVF +K N G+ RYKA
Sbjct: 897 IQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKA 956
Query: 1122 RLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEV 1181
RLVA+G+ Q DY ETF+PV + + R IL+L + +HQ+DV AFL+G L+EE+
Sbjct: 957 RLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEI 1016
Query: 1182 YMQQPAGFQ-NSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFH 1240
YM+ P G NSD VCKLNKA+YGLKQA R WF+ + AL + F S D ++
Sbjct: 1017 YMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYIL- 1073
Query: 1241 NKSNV---IYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQD 1297
+K N+ IY+L+YVDD++I + + + L +F + L ++ +F+G+++ +Q+
Sbjct: 1074 DKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI-EMQE 1132
Query: 1298 RSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYA 1357
+ L+Q+ Y+ +L + +M +STP+ S +D + T RS++G L Y
Sbjct: 1133 DKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN-TPCRSLIGCLMYI 1191
Query: 1358 TL-TRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVA 1416
L TRP+++ +VN + ++ S+ E W+ +KR+LRYLKGTI L + +L ++
Sbjct: 1192 MLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKK-NLAFENKIIG 1250
Query: 1417 YCDADWGSDPDDRRSTSGSCV-FFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLW 1475
Y D+DW DR+ST+G F NL+ W +K+Q VA SSTEAEY +L E LW
Sbjct: 1251 YVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1310
Query: 1476 IQSLLQELQVPFTVP-KVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVH 1534
++ LL + + P K++ DN G +++ +NP H R KH+++ F RE+VQN + +
Sbjct: 1311 LKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLE 1370
Query: 1535 HVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
++P+ +Q+ADIFTK L RF +LR KL +
Sbjct: 1371 YIPTENQLADIFTKPLPAARFVELRDKLGL 1400
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 209 bits (531), Expect = 6e-53
Identities = 107/230 (46%), Positives = 156/230 (67%), Gaps = 5/230 (2%)
Query: 1246 IYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQT 1305
+Y+L+YVDDI++TG+ + ++ +L+S F++K LG + YFLG+Q+ L L+QT
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIK-THPSGLFLSQT 59
Query: 1306 KYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEIS 1365
KY +L A M + K +STP+ S A Y DP+ +RSIVGALQY TLTRP+IS
Sbjct: 60 KYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY-PDPSDFRSIVGALQYLTLTRPDIS 118
Query: 1366 FSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSD 1425
++VN VCQ + +P + +KR+LRY+KGTI HGL+I +S +++ A+CD+DW
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK---NSKLNVQAFCDSDWAGC 175
Query: 1426 PDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLW 1475
RRST+G C F G N+++W++K+Q V+RSSTE EYR+LA T+AEL W
Sbjct: 176 TSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 165 bits (417), Expect = 1e-39
Identities = 105/311 (33%), Positives = 162/311 (51%), Gaps = 6/311 (1%)
Query: 1166 LDVNNAFLHGALQEEVYMQQPAGFQNS-DKTLVCKLNKALYGLKQAPRAWFDRLKAALVK 1224
+DV+ AFL+ + E +Y++QP GF N + V +L +YGLKQAP W + + L K
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1225 YGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQL 1284
GF + L+ IYI VYVDD+++ V Q+L +++K LG++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1285 DYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDP 1344
D FLG+ +H + + L+ YI +++ K TP+ + L + + + D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1345 TLYRSIVGALQYATLT-RPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHI 1403
T Y+SIVG L + T RP+IS+ V+ + +FL +P H ++ +R+LRYL T L
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1404 RPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKK-QTLVARSSTEAE 1462
R S V+L YCDA G+ D ST G VTW+SKK + ++ STEAE
Sbjct: 241 RS---GSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAE 297
Query: 1463 YRSLANTSAEL 1473
Y + + T E+
Sbjct: 298 YITASETVMEI 308
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 144 bits (363), Expect = 2e-33
Identities = 132/475 (27%), Positives = 230/475 (47%), Gaps = 34/475 (7%)
Query: 1119 YKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQ 1178
YKAR+V +G Q Y+ + + I++ L +A ++ + LD+N+AFL+ L+
Sbjct: 1337 YKARIVCRGDTQSPD-TYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395
Query: 1179 EEVYMQQPAGFQNSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFT 1238
EE+Y+ P D+ V KLNKALYGLKQ+P+ W D L+ L G K + P L+
Sbjct: 1396 EEIYIPHP-----HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQ 1450
Query: 1239 FHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQL------DYFLGVQ- 1291
+K+ + I VYVDD +I + + E + KL S F LK G L LG+
Sbjct: 1451 TEDKN--LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDL 1508
Query: 1292 VHHLQDRSLLLTQTKYIG--DLLERADMAEAKGISTPMVSGARLS------KHGADYFSD 1343
V++ + ++ LT +I D ++ + + S P +S ++ + + F
Sbjct: 1509 VYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQ 1568
Query: 1344 PTL-YRSIVGALQYAT-LTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGL 1401
L + ++G L Y R +I F+V KV + ++ P E + + +I++YL G+
Sbjct: 1569 GVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGI 1628
Query: 1402 HI-RPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTE 1460
H R C+ V +A DA GS+ D +S G +++G N+ S K T SSTE
Sbjct: 1629 HYDRDCNKDKKV--IAITDASVGSE-YDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTE 1685
Query: 1461 AEYRSLANTSAELLWIQSLLQEL-QVPFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDI 1519
AE ++ A+ ++ L+EL + + D+ A+ + + K +
Sbjct: 1686 AELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKT 1745
Query: 1520 FFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRF----EDLRSKLNVREKLVS 1570
++EK++ +S+ + + IAD+ TK +S + F + L++K+ ++ L S
Sbjct: 1746 EIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVLKNKITSQDILAS 1800
Score = 72.4 bits (176), Expect = 9e-12
Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 21/298 (7%)
Query: 617 VNTIVSTSN-----NVPSPTAYDLWHSRLGHPHYEALQSALTTC----KIPVPHKSKYTI 667
+N I TS+ N S T D H R+GH + +++++ + + +
Sbjct: 538 INAIKPTSSPGFKLNKRSITLEDA-HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFW 596
Query: 668 CHSCCVAKS----HRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSR 723
C +C ++K+ H S + + P D++GP S ++ Y L VD +R
Sbjct: 597 CQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTR 656
Query: 724 FTWIYLLKRKSETSTVFIQFQA---MVELKFGLKIKSVQTDGGTEFK--PLLPHFLKLGI 778
+ K+ T+ Q + VE +F K++ + +D GTEF + +F+ GI
Sbjct: 657 YCMTSTHFNKN-AETILAQVRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGI 715
Query: 779 THRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVL 838
H LT H NG ER R I+ +LL +N+ +W++A +AT + N L
Sbjct: 716 HHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKST 775
Query: 839 GNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYK 896
G L P + + P +++ + +N KL + L + GYK
Sbjct: 776 GKL-PLKAISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYK 832
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 122 bits (305), Expect = 1e-26
Identities = 147/651 (22%), Positives = 288/651 (43%), Gaps = 70/651 (10%)
Query: 951 PIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNAVSSTSSSDHF 1010
P+P H PT S D + +P+ +HS T S + G N +++T S
Sbjct: 1147 PLPDLTHQSPTDTS-----DVSKDIPH--IHSRQTNS---SLGGMDDSNVLTTTKSKKRS 1196
Query: 1011 ASASSIPATTTGSS-QPQQVTNVHPMQTRAKSGIV---------KPRLLPTLLLAQAEPV 1060
+ + + + + ++ P +++ + ++ KP + TL +A
Sbjct: 1197 LEDNETEIEVSRDTWNNKNMRSLEPPRSKKRINLIAAIKGVKSIKP-VRTTLRYDEAITY 1255
Query: 1061 TTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWV----FRIKENADGSV 1116
+ KD ++ A E L+ NTW R+ I K V F + DG+
Sbjct: 1256 NKDNKEKD-RYVEAYHKEISQLLKMNTWD-TNKYYDRNDIDPKKVINSMFIFNKKRDGT- 1312
Query: 1117 NRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGA 1176
+KAR VA+G Q ++ S V + L++A+ ++I QLD+++A+L+
Sbjct: 1313 --HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYAD 1370
Query: 1177 LQEEVYMQQPAGFQNSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSL 1236
++EE+Y++ P +DK L +L K+LYGLKQ+ W++ +K+ L+ +CCD
Sbjct: 1371 IKEELYIRPPPHLGLNDKLL--RLRKSLYGLKQSGANWYETIKSYLI------NCCDMQE 1422
Query: 1237 ---FTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALK--QLGQLDY----- 1286
++ K++ + I ++VDD+I+ L ++++ L ++ K LG+ D
Sbjct: 1423 VRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYD 1482
Query: 1287 FLGVQVHHLQDRSLLLTQTKYIGDLLERADM---AEAKGISTPMVSGARLSKHGADYFSD 1343
LG+++ + + + + L K + + L + ++ + K + P G + + + D
Sbjct: 1483 ILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDED 1542
Query: 1344 PTL-----YRSIVGALQYATLT-RPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTI 1397
+ ++G Y R ++ + +N + Q + P + +++++ T
Sbjct: 1543 EYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTR 1602
Query: 1398 HHGLHIRPCSLHSPVS-LVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVAR 1456
L P + LVA DA +G+ P +S G+ ++ S K +L
Sbjct: 1603 DKQLIWHKNKPTKPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCT 1661
Query: 1457 SSTEAEYRSLANTSAELLWIQSLLQELQVPFTVPKVFCDNMGAVAL---THNPVLHTR-- 1511
S+TEAE +++ L + L+QEL + + D+ +++ T+ R
Sbjct: 1662 STTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFF 1721
Query: 1512 -TKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSK 1561
TK M L R++V +L+V+++ + IAD+ TK L F+ L +K
Sbjct: 1722 GTKAMRL-----RDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
Score = 95.5 bits (236), Expect = 1e-18
Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 48/383 (12%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A + T N ++ + + Q +PI +IG+ F+ T+T++
Sbjct: 457 DSGASQTLVRSAHYLHHA---TPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSI--- 510
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
L PNI +L+S+S+ A N + + T TL R SDG +
Sbjct: 511 KALHTPNIAYDLLSLSELANQN------------ITACFTRNTLER----SDGTVLAPIV 554
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEALQ 649
+F+ +S + + S V+ S +V + Y L H LGH ++ ++Q
Sbjct: 555 KHGDFYW------LSKKYLIPSHISKLTINNVNKSKSV-NKYPYPLIHRMLGHANFRSIQ 607
Query: 650 -----SALTTCK---IPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+A+T K I + S Y C C + KS + S L P + +
Sbjct: 608 KSLKKNAVTYLKESDIEWSNASTYQ-CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHT 666
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D +RF W+Y L + E S VF A ++ +F ++
Sbjct: 667 DIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARV 726
Query: 756 KSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ K L F GIT T +G ER +R ++ +LL C+
Sbjct: 727 LVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSG 786
Query: 814 MPTSYWDHAFLTATFLINRLPTP 836
+P W A +T + N L +P
Sbjct: 787 LPNHLWFSAVEFSTIIRNSLVSP 809
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 117 bits (293), Expect = 2e-25
Identities = 62/125 (49%), Positives = 84/125 (66%), Gaps = 3/125 (2%)
Query: 1035 MQTRAKSGIVK--PRLLPTLLLA-QAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLV 1091
M TR+K+GI K P+ T+ + EP + ALKDP W AM+ E DAL N TW LV
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60
Query: 1092 TLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRL 1151
P ++ +GCKWVF+ K ++DG+++R KARLVAKG+HQ +G + ET+SPVV+ TIR
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120
Query: 1152 ILTLA 1156
IL +A
Sbjct: 121 ILNVA 125
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 115 bits (288), Expect = 9e-25
Identities = 145/680 (21%), Positives = 291/680 (42%), Gaps = 75/680 (11%)
Query: 941 VISYVPSLQQPIPSPHHSH-------PTGISSPNSVDSLQS-------MPNSPVHSAATV 986
+I PS+ P + SH PT +S N+ +S+ + P SP
Sbjct: 662 IIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPF 721
Query: 987 SEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKP 1046
E P + + +++ S+ + + +S + + +V+ T+ + P
Sbjct: 722 KELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSR-DTWNTKNMRSLEPP 780
Query: 1047 RLLPTLLLAQA-----------------EPVTTKHALKDPT-WMAAMKSEYDALMSNNTW 1088
R + L A E +T +K+ ++ A E + L+ TW
Sbjct: 781 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW 840
Query: 1089 TLVTLPKGRHPIGCKWV----FRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVV 1144
R I K V F + DG+ +KAR VA+G Q + S V
Sbjct: 841 DTDEY-YDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARGDIQHPDTYDSGMQSNTV 896
Query: 1145 KPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCKLNKAL 1204
+ L+LA+ ++I QLD+++A+L+ ++EE+Y++ P +DK + +L K+L
Sbjct: 897 HHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSL 954
Query: 1205 YGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPF 1264
YGLKQ+ W++ +K+ L+K + + ++ K++ + I ++VDD+I+ L
Sbjct: 955 YGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNA 1011
Query: 1265 IQEVVQKLNSEFALK--QLGQLDY-----FLGVQVHHLQDRSLLLTQTKYIGDLLERADM 1317
++++ L ++ K LG+ D LG+++ + + + + L + + + + ++
Sbjct: 1012 NKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNV 1071
Query: 1318 ---AEAKGISTPMVSGARLSKHGADYFSDPTL-----YRSIVGALQYATLT-RPEISFSV 1368
+ + +S P G + + + D + ++G Y R ++ + +
Sbjct: 1072 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131
Query: 1369 NKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVS-LVAYCDADWGSDPD 1427
N + Q + P + +++++ T L P + LVA DA +G+ P
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP- 1190
Query: 1428 DRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF 1487
+S G+ ++ S K +L S+TEAE +++ + L + L+QEL
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKP 1250
Query: 1488 TVPKVFCDNMGAVAL---THNPVLHTR---TKHMELDIFFVREKVQNQSLFVHHVPSVDQ 1541
+ + D+ +++ T+ R TK M L R++V +L+V+++ +
Sbjct: 1251 IIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRL-----RDEVSGNNLYVYYIETKKN 1305
Query: 1542 IADIFTKALSPTRFEDLRSK 1561
IAD+ TK L F+ L +K
Sbjct: 1306 IADVMTKPLPIKTFKLLTNK 1325
Score = 84.3 bits (207), Expect = 2e-15
Identities = 145/622 (23%), Positives = 238/622 (37%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 34 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 87
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 88 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 131
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 132 KYGDFYW------VSKKYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 183
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 184 RYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 243
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 244 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 303
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 304 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 363
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 364 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 420
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 421 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 480
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P ++ S SP S
Sbjct: 481 EDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPP 540
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++N+ + +
Sbjct: 541 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISNIESTGSGGMHKLNV 598
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 599 PLLAP---MSQSNTHESSHASK 617
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 113 bits (283), Expect = 4e-24
Identities = 142/685 (20%), Positives = 289/685 (41%), Gaps = 85/685 (12%)
Query: 941 VISYVPSLQQPIPSPHHSH-------PTGISSPNSVDSLQS-------MPNSPVHSAATV 986
+I PS+ P + SH PT +S N+ +S+ + P SP
Sbjct: 662 IIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPF 721
Query: 987 SEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKP 1046
E P + + +++ S+ + + +S + + +V+ T+ + P
Sbjct: 722 KELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSR-DTWNTKNMRSLEPP 780
Query: 1047 RLLPTLLLAQA-----------------EPVTTKHALKDPT-WMAAMKSEYDALMSNNTW 1088
R + L A E +T +K+ ++ A E + L+ TW
Sbjct: 781 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTW 840
Query: 1089 TLVTLPKGRHPIGCKWV----FRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVV 1144
R I K V F DG+ +KAR VA+G Q + +T+ P +
Sbjct: 841 DTDRY-YDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQ-----HPDTYDPGM 891
Query: 1145 KPITIR-----LILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCK 1199
+ T+ L+LA+ ++I QLD+++A+L+ ++EE+Y++ P +DK + +
Sbjct: 892 QSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLI--R 949
Query: 1200 LNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITG 1259
L K+LYGLKQ+ W++ +K+ L+K + + ++ K++ + I ++VDD+I+
Sbjct: 950 LKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFS 1006
Query: 1260 NFLPFIQEVVQKLNSEFALK--QLGQLDY-----FLGVQVHHLQDRSLLLTQTKYIGDLL 1312
L ++++ L ++ K LG+ D LG+++ + + + + L + + +
Sbjct: 1007 KDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKI 1066
Query: 1313 ERADM---AEAKGISTP-----MVSGARLSKHGADYFSDPTLYRSIVGALQYATLT-RPE 1363
+ ++ + + +S P + L DY + ++G Y R +
Sbjct: 1067 PKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFD 1126
Query: 1364 ISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGT------IHHGLHIRPCSLHSPVSLVAY 1417
+ + +N + Q + P ++ +++++ T H ++P + LV
Sbjct: 1127 LLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTN-----KLVVI 1181
Query: 1418 CDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQ 1477
DA +G+ P +S G+ ++ S K +L S+TEAE +++ + L +
Sbjct: 1182 SDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLS 1240
Query: 1478 SLLQELQVPFTVPKVFCDNMGAVA-LTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHV 1536
L+QEL + D+ ++ + N R + +R++V L V ++
Sbjct: 1241 HLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYI 1300
Query: 1537 PSVDQIADIFTKALSPTRFEDLRSK 1561
+ IAD+ TK L F+ L +K
Sbjct: 1301 ETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 84.3 bits (207), Expect = 2e-15
Identities = 145/622 (23%), Positives = 238/622 (37%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 34 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 87
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 88 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 131
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 132 KYGDFYW------VSKKYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 183
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 184 RYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 243
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 244 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 303
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 304 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 363
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 364 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 420
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 421 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 480
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P ++ S SP S
Sbjct: 481 EDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPP 540
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++N+ + +
Sbjct: 541 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISNIESTGSGGMHKLNV 598
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 599 PLLAP---MSQSNTHESSHASK 617
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 113 bits (282), Expect = 5e-24
Identities = 140/680 (20%), Positives = 286/680 (41%), Gaps = 75/680 (11%)
Query: 941 VISYVPSLQQPIPSPHHSH-------PTGISSPNSVDSLQS-------MPNSPVHSAATV 986
+I PS+ P + SH PT +S N+ +S+ + P SP
Sbjct: 1089 IIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPF 1148
Query: 987 SEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKP 1046
E P + + +++ S+ + + +S + + +V+ T+ + P
Sbjct: 1149 KELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSR-DTWNTKNMRSLEPP 1207
Query: 1047 RLLPTLLLAQA-----------------EPVTTKHALKDPT-WMAAMKSEYDALMSNNTW 1088
R + L A E +T +K+ ++ A E + L+ TW
Sbjct: 1208 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW 1267
Query: 1089 TLVTLPKGRHPIGCKWV----FRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVV 1144
R I K V F + DG+ +KAR VA+G Q + S V
Sbjct: 1268 DTDEY-YDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARGDIQHPDTYDSGMQSNTV 1323
Query: 1145 KPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCKLNKAL 1204
+ L+LA+ ++I QLD+++A+L+ ++EE+Y++ P +DK + +L K+L
Sbjct: 1324 HHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSL 1381
Query: 1205 YGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPF 1264
YGLKQ+ W++ +K+ L++ + + ++ K++ + I ++VDD+++ L
Sbjct: 1382 YGLKQSGANWYETIKSYLIQ---QCGMEEVRGWSCVFKNSQVTICLFVDDMVLFSKNLNS 1438
Query: 1265 IQEVVQKLNSEFALK--QLGQLDY-----FLGVQVHHLQDRSLLLTQTKYIGDLLERADM 1317
+ +++KL ++ K LG+ D LG+++ + + + + L + + + + ++
Sbjct: 1439 NKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNV 1498
Query: 1318 ---AEAKGISTP-----MVSGARLSKHGADYFSDPTLYRSIVGALQYATLT-RPEISFSV 1368
+ + +S P + L DY + ++G Y R ++ + +
Sbjct: 1499 PLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYI 1558
Query: 1369 NKVCQFLSQPLEEHWKAVKRILRYLKGT------IHHGLHIRPCSLHSPVSLVAYCDADW 1422
N + Q + P ++ +++++ T H ++P + LV DA +
Sbjct: 1559 NTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTN-----KLVVISDASY 1613
Query: 1423 GSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQE 1482
G+ P +S G+ ++ S K +L S+TEAE +++ + L + L+QE
Sbjct: 1614 GNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQE 1672
Query: 1483 LQVPFTVPKVFCDNMGAVA-LTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQ 1541
L + D+ ++ + N R + +R++V L V ++ +
Sbjct: 1673 LDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKN 1732
Query: 1542 IADIFTKALSPTRFEDLRSK 1561
IAD+ TK L F+ L +K
Sbjct: 1733 IADVMTKPLPIKTFKLLTNK 1752
Score = 84.3 bits (207), Expect = 2e-15
Identities = 145/622 (23%), Positives = 238/622 (37%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 461 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 514
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 515 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 558
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 559 KYGDFYW------VSKKYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 610
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 611 RYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 670
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 671 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 730
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 731 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 790
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 791 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 847
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 848 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 907
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P ++ S SP S
Sbjct: 908 EDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPP 967
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++N+ + +
Sbjct: 968 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISNIESTGSGGMHKLNV 1025
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 1026 PLLAP---MSQSNTHESSHASK 1044
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 112 bits (280), Expect = 8e-24
Identities = 144/680 (21%), Positives = 289/680 (42%), Gaps = 75/680 (11%)
Query: 941 VISYVPSLQQPIPSPHHSH-------PTGISSPNSVDSLQS-------MPNSPVHSAATV 986
+I PS+ P + SH PT +S N+ +S+ + P SP
Sbjct: 1089 IIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPF 1148
Query: 987 SEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKP 1046
E P + + +++ S+ + + +S + + +V+ T+ + P
Sbjct: 1149 KELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSR-DTWNTKNMRSLEPP 1207
Query: 1047 RLLPTLLLAQA-----------------EPVTTKHALKDPT-WMAAMKSEYDALMSNNTW 1088
R + L A E +T +K+ ++ A E + L+ TW
Sbjct: 1208 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW 1267
Query: 1089 TLVTLPKGRHPIGCKWV----FRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVV 1144
R I K V F + DG+ +KAR VA+G Q S V
Sbjct: 1268 DTDEY-YDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARGDIQHPDTYDTGMQSNTV 1323
Query: 1145 KPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCKLNKAL 1204
+ L+LA+ ++I QLD+++A+L+ ++EE+Y++ P +DK + +L K+
Sbjct: 1324 HHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSH 1381
Query: 1205 YGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPF 1264
YGLKQ+ W++ +K+ L+K + + ++ K++ + I ++VDD+I+ L
Sbjct: 1382 YGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNA 1438
Query: 1265 IQEVVQKLNSEFALK--QLGQLDY-----FLGVQVHHLQDRSLLLTQTKYIGDLLERADM 1317
++++ L ++ K LG+ D LG+++ + + + + L + + + + ++
Sbjct: 1439 NKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNV 1498
Query: 1318 ---AEAKGISTPMVSGARLSKHGADYFSDPTL-----YRSIVGALQYATLT-RPEISFSV 1368
+ + +S P G + + + D + ++G Y R ++ + +
Sbjct: 1499 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1558
Query: 1369 NKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVS-LVAYCDADWGSDPD 1427
N + Q + P + +++++ T L P + LVA DA +G+ P
Sbjct: 1559 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP- 1617
Query: 1428 DRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF 1487
+S G+ ++ S K +L S+TEAE +++ + L + L+QEL
Sbjct: 1618 YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKP 1677
Query: 1488 TVPKVFCDNMGAVAL---THNPVLHTR---TKHMELDIFFVREKVQNQSLFVHHVPSVDQ 1541
+ + D+ +++ T+ R TK M L R++V +L+V+++ +
Sbjct: 1678 IIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRL-----RDEVSGNNLYVYYIETKKN 1732
Query: 1542 IADIFTKALSPTRFEDLRSK 1561
IAD+ TK L F+ L +K
Sbjct: 1733 IADVMTKPLPIKTFKLLTNK 1752
Score = 85.1 bits (209), Expect = 1e-15
Identities = 145/622 (23%), Positives = 238/622 (37%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 461 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 514
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 515 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 558
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 559 QYGDFYW------VSKRYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 610
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 611 RYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 670
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 671 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 730
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 731 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 790
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 791 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 847
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 848 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 907
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P ++ S SP S
Sbjct: 908 EDLNRLTASYQSFIASNEIQESNDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPP 967
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++N+ + +
Sbjct: 968 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISNIESTGSGGMHKLNV 1025
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 1026 PLLAP---MSQSNTHESSHASK 1044
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 112 bits (279), Expect = 1e-23
Identities = 142/675 (21%), Positives = 284/675 (42%), Gaps = 65/675 (9%)
Query: 941 VISYVPSLQQPIPSPHHSH-------PTGISSPNSVDSLQS-------MPNSPVHSAATV 986
+I PS+ P + SH PT +S N+ +S+ + P SP
Sbjct: 662 IIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPF 721
Query: 987 SEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKP 1046
E P + + +++ S+ + + +S + + +V+ T+ + P
Sbjct: 722 KELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSR-DTWNTKNMRSLEPP 780
Query: 1047 RLLPTLLLAQA-----------------EPVTTKHALKDPT-WMAAMKSEYDALMSNNTW 1088
R + L A E +T +K+ ++ A E + L+ NTW
Sbjct: 781 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTW 840
Query: 1089 TLVTLPKGRHPIGCKWV----FRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVV 1144
R I K V F DG+ +KAR VA+G Q + S V
Sbjct: 841 DTDKY-YDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQHPDTYDSGMQSNTV 896
Query: 1145 KPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCKLNKAL 1204
+ L+LA+ ++I QLD+++A+L+ ++EE+Y++ P +DK + +L K+L
Sbjct: 897 HHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSL 954
Query: 1205 YGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPF 1264
YGLKQ+ W++ +K+ L+K + + ++ K++ + I ++VDD+I+ L
Sbjct: 955 YGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNA 1011
Query: 1265 IQEVVQKLNSEFALK--QLGQLDY-----FLGVQVHHLQDRSLLLTQTKYIGDLLERADM 1317
++++ L ++ K LG+ D LG+++ + + + + L + + + + ++
Sbjct: 1012 NKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNV 1071
Query: 1318 ---AEAKGISTPMVSGARLSKHGADYFSDPTL-----YRSIVGALQYATLT-RPEISFSV 1368
+ + +S P G + + + D + ++G Y R ++ + +
Sbjct: 1072 PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131
Query: 1369 NKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVS-LVAYCDADWGSDPD 1427
N + Q + P + +++++ T L P + LVA DA +G+ P
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP- 1190
Query: 1428 DRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF 1487
+S G+ ++ S K +L S+TEAE +++ + L + L+QEL
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKP 1250
Query: 1488 TVPKVFCDNMGAVA-LTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIF 1546
+ D+ ++ + N R + +R++V L V ++ + IAD+
Sbjct: 1251 ITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVM 1310
Query: 1547 TKALSPTRFEDLRSK 1561
TK L F+ L +K
Sbjct: 1311 TKPLPIKTFKLLTNK 1325
Score = 84.3 bits (207), Expect = 2e-15
Identities = 145/622 (23%), Positives = 238/622 (37%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 34 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 87
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 88 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 131
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 132 KYGDFYW------VSKKYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 183
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 184 RYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 243
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 244 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 303
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 304 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 363
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 364 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 420
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 421 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 480
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P ++ S SP S
Sbjct: 481 EDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPP 540
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++N+ + +
Sbjct: 541 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISNIESTGSGGMHKLNV 598
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 599 PLLAP---MSQSNTHESSHASK 617
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 109 bits (273), Expect = 5e-23
Identities = 141/653 (21%), Positives = 271/653 (40%), Gaps = 74/653 (11%)
Query: 951 PIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNAVSSTSSSDHF 1010
P+P PT +S DS + +P P++S T S + G NA ++ +S
Sbjct: 705 PLPDLPPEPPTELS-----DSFKELP--PINSRQTNS---SLGGIGDSNAYTTINSKKRS 754
Query: 1011 ASASSIPATTTGSS----------QPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQAEPV 1060
+ + + P+ +H + +KP + T L
Sbjct: 755 LEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--IRTTLRYDEAIT 812
Query: 1061 TTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWV----FRIKENADGSV 1116
K + ++ A E + L+ TW R I K V F DG+
Sbjct: 813 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKY-YDRKEIDPKRVINSMFIFNRKRDGT- 870
Query: 1117 NRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGA 1176
+KAR VA+G Q + S V + L+LA+ ++I QLD+++A+L+
Sbjct: 871 --HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 1177 LQEEVYMQQPAGFQNSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKY-GFKA----SC 1231
++EE+Y++ P +DK + +L K+LYGLKQ+ W++ +K+ L+K G + SC
Sbjct: 929 IKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 986
Query: 1232 CDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALK--QLGQLDY--- 1286
F N + I ++VDD+++ L + ++ KL ++ K LG+ D
Sbjct: 987 ------VFENSQ--VTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQ 1038
Query: 1287 --FLGVQVHHLQDRSLLLTQTKYIGDLLERADM---AEAKGISTP-----MVSGARLSKH 1336
LG+++ + + + + L + + + + ++ + + +S P + L
Sbjct: 1039 YDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELE 1098
Query: 1337 GADYFSDPTLYRSIVGALQYATLT-RPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKG 1395
DY + ++G Y R ++ + +N + Q + P ++ +++++
Sbjct: 1099 EDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWN 1158
Query: 1396 T------IHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSK 1449
T H ++P + LV DA +G+ P +S G+ ++ S
Sbjct: 1159 TRDKQLIWHKSKPVKPTN-----KLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKST 1212
Query: 1450 KQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPFTVPKVFCDNMGAVA-LTHNPVL 1508
K +L S+TEAE +++ + L + L+QEL + D+ ++ + N
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEE 1272
Query: 1509 HTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSK 1561
R + +R++V L V ++ + IAD+ TK L F+ L +K
Sbjct: 1273 KFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 83.6 bits (205), Expect = 4e-15
Identities = 144/622 (23%), Positives = 239/622 (38%), Gaps = 64/622 (10%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ--GLPIQSIGSASFSSPIHTQTTLLLK 529
DSGA+ + A I S + N + + + Q +PI +IG F +T+T++
Sbjct: 34 DSGASRTLIRSAHHIH---SASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI--- 87
Query: 530 NLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGM 589
+L PNI +L+S+++ A + + + T L R SDG +
Sbjct: 88 KVLHTPNIAYDLLSLNELAAVD------------ITACFTKNVLER----SDGTVLAPIV 131
Query: 590 HSSNFHKDLPQVPVSSAFSLSKPAS-PAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
+F+ VS + L S P +N + ++ + P Y H L H + + +
Sbjct: 132 KYGDFYW------VSKKYLLPSNISVPTINNVHTSESTRKYP--YPFIHRMLAHANAQTI 183
Query: 649 QSALTTCKIPVPHKSKYTI-------CHSCCVAKSHRLPSSASSTLYTA----PLELIFA 697
+ +L I ++S C C + KS + S L P + +
Sbjct: 184 RYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHT 243
Query: 698 DLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS--TVFIQFQAMVELKFGLKI 755
D++GP + SYF++ D ++F W+Y L + E S VF A ++ +F +
Sbjct: 244 DIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASV 303
Query: 756 KSVQTDGGTEFKPLLPH-FL-KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+Q D G+E+ H FL K GIT T +G ER +R +++ + L C+
Sbjct: 304 LVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSG 363
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN- 872
+P W A +T + N L +P + H D L FG + +N
Sbjct: 364 LPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGL-AGLDISTLLPFGQPVI--VNDHNP 420
Query: 873 SSKLSFRSQECVFLGYSSSHKGY-------KCLASDGRIYISKDVQFNEFKFPYSTLFSS 925
+SK+ R L S + GY K I + + +F Y L
Sbjct: 421 NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFD 480
Query: 926 EFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAAT 985
E +S S I S I S H P + ++ S SP S
Sbjct: 481 EDLNRLTASYHSFIASNEIQQSNDLNIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPP 540
Query: 986 VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVK 1045
S H S VS + + D S S+I + SS P Q++++ + +
Sbjct: 541 -STHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTP-QISDIESTGSGGMHRLDV 598
Query: 1046 PRLLPTLLLAQAEPVTTKHALK 1067
P L P ++Q+ + HA K
Sbjct: 599 PLLAP---MSQSNTHESSHASK 617
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 71.6 bits (174), Expect = 2e-11
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1356 YATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLV 1415
Y T+TRP+++F+VN++ QF S +AV ++L Y+KGT+ GL S S + L
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY---SATSDLQLK 58
Query: 1416 AYCDADWGSDPDDRRSTSGSC 1436
A+ D+DW S PD RRS +G C
Sbjct: 59 AFADSDWASCPDTRRSVTGFC 79
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 50.8 bits (120), Expect = 3e-05
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEF 766
AGY Y L VD FS W+ + ET+ + + + + E+ +FGL K + +D G F
Sbjct: 920 AGYKYLLVFVDTFSG--WVEAFPTRQETAHIVAK-KILEEIFPRFGLP-KVIGSDNGPAF 975
Query: 767 KPLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
+ L LGI +L C + +G VER +R I ET L + T D L
Sbjct: 976 VSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLETGLKDWRRL 1031
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVP 851
+ L+ TP L+PY L+ P
Sbjct: 1032 LSLALLRARNTPNRFGLTPYEILYGGP 1058
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 49.7 bits (117), Expect = 6e-05
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEF 766
AGY Y L VD FS W+ + ET+ + + + + E+ +FGL K + +D G F
Sbjct: 777 AGYKYLLVFVDTFSG--WVEAYPTRQETAHMVAK-KILEEIFPRFGLP-KVIGSDNGPAF 832
Query: 767 KPLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
+ L LGI +L C + +G VER +R I ET L + T D L
Sbjct: 833 VSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLETGLKDWRRL 888
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVP 851
+ L+ TP L+PY L+ P
Sbjct: 889 LSLALLRARNTPNRFGLTPYEILYGGP 915
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 49.3 bits (116), Expect = 8e-05
Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 710 GYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEFK 767
GY Y L VD FS WI K ET+ V + + + E+ +FG+ + + TD G F
Sbjct: 12 GYKYLLVFVDTFSG--WIEAFPTKKETAKVVTK-KLLEEIFPRFGMP-QVLGTDNGPAFV 67
Query: 768 PLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLT 825
+ + LGI +L C + +G VER +R I ET L + T D L
Sbjct: 68 SKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLATGSRDWVLLL 123
Query: 826 ATFLINRLPTPVLGNLSPYHKLFKVP 851
L TP L+PY L+ P
Sbjct: 124 PLALYRARNTPGPHGLTPYEILYGAP 149
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 48.9 bits (115), Expect = 1e-04
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 710 GYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEFK 767
GY Y L +D FS WI K ET+ V + + + E+ +FG+ + + TD G F
Sbjct: 926 GYKYLLVFIDTFSG--WIEAFPTKKETAKVVTK-KLLEEIFPRFGMP-QVLGTDNGPAFV 981
Query: 768 PLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLT 825
+ + LGI +L C + +G VER +R I ET L + T D L
Sbjct: 982 SKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLATGSRDWVLLL 1037
Query: 826 ATFLINRLPTPVLGNLSPYHKLFKVP 851
L TP L+PY L+ P
Sbjct: 1038 PLALYRARNTPGPHGLTPYEILYGAP 1063
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 48.5 bits (114), Expect = 1e-04
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 710 GYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEFK 767
GY Y L VD FS W+ K ET+ V + + + E+ +FG+ + + TD G F
Sbjct: 931 GYKYLLVFVDTFSG--WVEAFPTKKETAKVVTK-KLLEEIFPRFGMP-QVLGTDNGPAFV 986
Query: 768 PLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLT 825
+ + LG+ +L C + +G VER +R I ET L + T D L
Sbjct: 987 SKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLATGSRDWVLLL 1042
Query: 826 ATFLINRLPTPVLGNLSPYHKLFKVP 851
L TP L+PY L+ P
Sbjct: 1043 PLALYRARNTPGPHGLTPYEILYGAP 1068
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 48.5 bits (114), Expect = 1e-04
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 710 GYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL--KFGLKIKSVQTDGGTEFK 767
GY Y L VD FS W+ K ET+ V + + + E+ +FG+ + + TD G F
Sbjct: 931 GYKYLLVFVDTFSG--WVEAFPTKKETAKVVTK-KLLEEIFPRFGMP-QVLGTDNGPAFV 986
Query: 768 PLLPHFLK--LGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLT 825
+ + LG+ +L C + +G VER +R I ET L + T D L
Sbjct: 987 SKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKET----LTKLTLATGSRDWVLLL 1042
Query: 826 ATFLINRLPTPVLGNLSPYHKLFKVP 851
L TP L+PY L+ P
Sbjct: 1043 PLALYRARNTPGPHGLTPYEILYGAP 1068
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,336,041
Number of Sequences: 164201
Number of extensions: 8965949
Number of successful extensions: 47551
Number of sequences better than 10.0: 593
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 503
Number of HSP's that attempted gapping in prelim test: 39829
Number of HSP's gapped (non-prelim): 5113
length of query: 1573
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1449
effective length of database: 39,613,130
effective search space: 57399425370
effective search space used: 57399425370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0010.11