BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.10
(289 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ROQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRN... 114 2e-25
ROQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hn... 114 2e-25
ROQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hn... 112 1e-24
ROR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hn... 111 2e-24
NUCL_MESAU (P08199) Nucleolin (Protein C23) 89 2e-17
NUCL_CHICK (P15771) Nucleolin (Protein C23) 88 2e-17
NSR1_YEAST (P27476) Nuclear localization sequence binding protei... 86 1e-16
NUCL_RAT (P13383) Nucleolin (Protein C23) 84 5e-16
NUCL_HUMAN (P19338) Nucleolin (Protein C23) 84 5e-16
NUCL_MOUSE (P09405) Nucleolin (Protein C23) 81 3e-15
GAR2_SCHPO (P41891) Protein gar2 80 4e-15
RBMT_HUMAN (Q9NW13) RNA-binding protein 28 (RNA binding motif pr... 77 5e-14
RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulat... 76 8e-14
IE68_SHV21 (Q01042) Immediate-early protein 74 5e-13
ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 73 9e-13
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 72 2e-12
ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 71 3e-12
TRT_DROME (P19351) Troponin T, skeletal muscle (Upheld protein) ... 70 5e-12
S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding ... 69 2e-11
ELV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (El... 69 2e-11
>ROQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP
Q) (hnRNP-Q) (Synaptotagmin binding, cytoplasmic RNA
interacting protein) (Liver regeneration-related protein
LRRG077) (Ab2-339)
Length = 533
Score = 114 bits (286), Expect = 2e-25
Identities = 60/168 (35%), Positives = 96/168 (56%), Gaps = 1/168 (0%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P G+E+++G I ++ E++L + G + ++R+M +G +GYAFV F TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 174 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 232
+A++ NN E + GK I S A +RLF+G+IPK T E + + + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 233 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP 280
+NRGF F+EY +H A +R+++ + K+ N TV WADP
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 235
Score = 38.1 bits (87), Expect = 0.025
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++ +AN V+EE L G++ V+ +K YAF+ F ++ A +A+EE+
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEM 301
Query: 180 NNSEFKGKKIK 190
N + +G+ I+
Sbjct: 302 NGKDLEGENIE 312
>ROQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP
Q) (hnRNP-Q) (Synaptotagmin binding, cytoplasmic RNA
interacting protein) (Glycine-and tyrosine-rich RNA
binding protein) (GRY-RBP) (NS1-associated protein 1)
(pp68)
Length = 623
Score = 114 bits (286), Expect = 2e-25
Identities = 60/168 (35%), Positives = 96/168 (56%), Gaps = 1/168 (0%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P G+E+++G I ++ E++L + G + ++R+M +G +GYAFV F TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 174 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 232
+A++ NN E + GK I S A +RLF+G+IPK T E + + + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 233 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP 280
+NRGF F+EY +H A +R+++ + K+ N TV WADP
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 325
Score = 38.1 bits (87), Expect = 0.025
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++ +AN V+EE L G++ V+ +K YAF+ F ++ A +A+EE+
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEM 391
Query: 180 NNSEFKGKKIK 190
N + +G+ I+
Sbjct: 392 NGKDLEGENIE 402
>ROQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP
Q) (hnRNP-Q) (Synaptotagmin binding, cytoplasmic RNA
interacting protein) (Glycine-and tyrosine-rich RNA
binding protein) (GRY-RBP) (NS1-associated protein 1)
Length = 623
Score = 112 bits (280), Expect = 1e-24
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P G+E+++G I ++ E++L + G + ++R+M +G +GYAFV F TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 174 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 232
+A++ NN E + GK I S A +RLF+G+IPK T E + + + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 233 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP 280
+NR F F+EY +H A +R+++ + K+ N TV WADP
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 325
Score = 38.1 bits (87), Expect = 0.025
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++ +AN V+EE L G++ V+ +K YAF+ F ++ A +A+EE+
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEM 391
Query: 180 NNSEFKGKKIK 190
N + +G+ I+
Sbjct: 392 NGKDLEGENIE 402
>ROR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP
R)
Length = 633
Score = 111 bits (278), Expect = 2e-24
Identities = 57/168 (33%), Positives = 98/168 (57%), Gaps = 1/168 (0%)
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P G+EV++G I ++ E++L + G + ++R+M SG+ +GYAF+ F KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 174 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 232
+A++ ++ E + GK + S A +RLF+G+IPK T E++ + + V G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 233 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADP 280
+NRGF F+EY +H A +R+++ + K+ N TV WADP
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328
Score = 37.0 bits (84), Expect = 0.056
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 120 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEEL 179
+++ +A V+EE L G++ V+ +K YAFV F+ + A +A++E+
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLK--------DYAFVHFEDRGAAVKAMDEM 394
Query: 180 NNSEFKGKKIK 190
N E +G++I+
Sbjct: 395 NGKEIEGEEIE 405
>NUCL_MESAU (P08199) Nucleolin (Protein C23)
Length = 713
Score = 88.6 bits (218), Expect = 2e-17
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 39/268 (14%)
Query: 19 SPEGNSEPEKPTDSDEQVDFDGDNDQEEE------------------------IEYEEVE 54
+P E E+ + +E+ D + ++D EEE + E+ +
Sbjct: 184 APASEDEDEEEDEEEEEEDEEEEDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEEDDD 243
Query: 55 EEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALP 114
+EEE EDEE +E EEE+EEEEEEEE EE KP+ G+ + + + E KK +
Sbjct: 244 DEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSES 303
Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQ 174
++IG + N S +L+V +++ ++ + +G + + +V F++ E +
Sbjct: 304 TTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEK 362
Query: 175 AIE----ELNNSEFKGKKIKCSSS---QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
A+E ++ +E K +K K S +A L N+ T +++K+V D +
Sbjct: 363 ALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED----ALE 418
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAE 255
I L + G+++G A+IE+ + A AE
Sbjct: 419 IRL---VSQDGKSKGIAYIEFKSEADAE 443
Score = 71.6 bits (174), Expect = 2e-12
Identities = 73/271 (26%), Positives = 121/271 (43%), Gaps = 31/271 (11%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVE-------- 65
A P N + K DSDE D D D+D+++ E EE EEE+E E V+
Sbjct: 125 AVTPAKGAKNGKNAKKEDSDE--DEDDDDDEDDSDEDEEDEEEDEFEPPVVKGKQGKVAA 182
Query: 66 ---EVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYI 122
E+E+EEE+EEEE E+E + D EEE ++ T K K A +P V
Sbjct: 183 AAPASEDEDEEEDEEEEEEDEEEEDDSEEEEAMEIT---PAKGKKAPAKVVPVKAKNVAE 239
Query: 123 GGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNS 182
+ +ED + E E + +E E + K K+ + ++
Sbjct: 240 EDDDDEEEDED-----EEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKK---EMTKQKEVP 291
Query: 183 EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRG 242
E K +K++ S S LFIGN+ +V ++K +++ P + + D++ +G NR
Sbjct: 292 EAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISE--PFAKNDLAVVDVR-TGTNRK 348
Query: 243 FAFIEYYN----HACAEYSRQKMSNSNFKLE 269
F ++++ + E + K+ + KLE
Sbjct: 349 FGYVDFESAEDLEKALELTGLKVFGNEIKLE 379
Score = 63.5 bits (153), Expect = 6e-10
Identities = 53/285 (18%), Positives = 131/285 (45%), Gaps = 26/285 (9%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVE---EEEEVEDEEVEEV 67
++ + P+ + T + + F+ D+ +E+ + +E ++ + + + +
Sbjct: 375 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYI 434
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHA-ELLALPPHGSEVYIGGIA 126
E + E + E+ E++ DG + + +T ++ ++++ + + + ++
Sbjct: 435 EFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLS 493
Query: 127 NNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKG 186
+ +EE L Q V E + + + G+ KGYAF+ F + E A +A+ N E +G
Sbjct: 494 YSATEETL----QEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 549
Query: 187 KKIKC----------SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQS 236
+ I+ + SQ LF+ + + T E +K+ G + ++ D +
Sbjct: 550 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF----EGSVRARIVTD-RE 604
Query: 237 SGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
+G ++GF F+++ + A+ +++ M + +++ N T+ WA P+
Sbjct: 605 TGSSKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 647
>NUCL_CHICK (P15771) Nucleolin (Protein C23)
Length = 694
Score = 88.2 bits (217), Expect = 2e-17
Identities = 74/313 (23%), Positives = 143/313 (45%), Gaps = 56/313 (17%)
Query: 12 VTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEI---------------------EY 50
V A+ P E E+ + D++ + + D++ E+E +
Sbjct: 157 VPAKKPAVVPAKQESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKA 216
Query: 51 EEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAEL 110
E +EE+E +++E EE E++EEE+EEE E E+ K + G+ + + + + KKK E
Sbjct: 217 ESEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTE- 275
Query: 111 LALPPHGSEVYIGGIANNVSEEDLRV-----FCQSVGEVSEVRIMKAKESGEGKGYAFVA 165
P +++ + E+LR F + +VSEVRI G K + +V
Sbjct: 276 --TPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI------GSSKRFGYVD 327
Query: 166 FKTKELASQAIEELNNSEFKGKKIKCSSSQAK------------HRLFIGNIPKKWTVED 213
F + E +A+ +LN + G +IK +++K LF+ N+P + T ++
Sbjct: 328 FLSAEDMDKAL-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDE 386
Query: 214 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP 273
MK V + ++E+ L G ++G A+IE+ A AE + ++ + +++ A
Sbjct: 387 MKNVFEN------ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT--EVDGRAM 438
Query: 274 TVSWADPRNSESS 286
+ + ++ + S
Sbjct: 439 VIDYTGEKSQQES 451
Score = 63.2 bits (152), Expect = 7e-10
Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 69 EEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANN 128
E + E E E+ +EE+ M +D+T ++ +++ + + ++
Sbjct: 414 EFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKG--GGERESKTLIVNNLSYA 471
Query: 129 VSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKK 188
SEE L+ + + M G KGYAFV F T E A +A+ NN+E +G+
Sbjct: 472 ASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRA 527
Query: 189 IKCSSS----------------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 232
I+ S Q LF+ + + T E +++ G IS ++
Sbjct: 528 IRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF----EGSISARIVT 583
Query: 233 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
D + +G ++GF F+++ + A+ +++ M + +++ N T+ +A P+
Sbjct: 584 D-RDTGSSKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 47.8 bits (112), Expect = 3e-05
Identities = 55/214 (25%), Positives = 88/214 (40%), Gaps = 33/214 (15%)
Query: 23 NSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEE---------------VEDEEVEEV 67
N + K +S+E+ D D ++D+E+E E EE +EEEE V ++ V
Sbjct: 107 NGKNAKKEESEEE-DEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPAVV 165
Query: 68 EEEEEEEEEEEEVEEESKPSDGE-EEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIA 126
++E EEEEEE +EE D E E+ +D T V+K A+ A P
Sbjct: 166 PAKQESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAK--ATPAKAKAESEDEED 223
Query: 127 NNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKG 186
+ED + E K + GK + KE+A N S +
Sbjct: 224 EEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGK-------RKKEMA-------NKSAPEA 269
Query: 187 KKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVAD 220
KK K + + LF+ N+ E+++ + +
Sbjct: 270 KKKKTETPASAFSLFVKNLTPTKDYEELRTAIKE 303
>NSR1_YEAST (P27476) Nuclear localization sequence binding protein
(P67)
Length = 414
Score = 85.9 bits (211), Expect = 1e-16
Identities = 67/294 (22%), Positives = 136/294 (45%), Gaps = 37/294 (12%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDF-----DGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
+++ S +SE E T +E D D +D+EEE E EE ++EE E +
Sbjct: 64 SESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSS 123
Query: 69 EE--EEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIA 126
+ E E+EE +++ K D EEE + +N +K+K+ E + +++G ++
Sbjct: 124 SSSSDSESEKEESNDKKRKSEDAEEEEDEESSN---KKQKNEET----EEPATIFVGRLS 176
Query: 127 NNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKG 186
++ +E L+ + +G V R++ + + +GY +V F+ K A +AI+E+ E G
Sbjct: 177 WSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDG 236
Query: 187 KKIKCSSSQAK-------------------HRLFIGNIPKKWTVEDMKKVVADVGPGVIS 227
+ I C S +K LF+GN+ + + ++ A G V+S
Sbjct: 237 RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGE-VVS 295
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
+ + ++ + +GF ++++ N A+ + + ++N + ++ PR
Sbjct: 296 VRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGE--YIDNRPVRLDFSSPR 346
>NUCL_RAT (P13383) Nucleolin (Protein C23)
Length = 712
Score = 83.6 bits (205), Expect = 5e-16
Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 45/269 (16%)
Query: 24 SEPEKPTDSDEQVDFDGDNDQEEEIEYEE-------------------------VEEEEE 58
SE E D D++ D D D ++EEE + EE EEEE+
Sbjct: 186 SEDEDEEDDDDEDDDDDDEEEEEEDDSEEEVMEITPAKGKKTPAKVVPVKAKSVAEEEED 245
Query: 59 VEDEEVEEVEEEEEEE-----EEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLAL 113
ED+E EE +E+EE+E E+EEE EE K + G+ + + + E KK +
Sbjct: 246 DEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSE 305
Query: 114 PPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
P ++IG + N S +L+V + +++ + + +G + + +V F++ E
Sbjct: 306 PTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVR-TGTNRKFGYVDFESAEDLE 364
Query: 174 QAIE----ELNNSEFKGKKIKCSSS---QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVI 226
+A+E ++ +E K +K K S +A L N+ T +++K+V D +
Sbjct: 365 KALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED----AV 420
Query: 227 SIELLKDLQSSGRNRGFAFIEYYNHACAE 255
I L + GR++G A+IE+ + A AE
Sbjct: 421 EIRL---VSQDGRSKGIAYIEFKSEADAE 446
Score = 62.8 bits (151), Expect = 1e-09
Identities = 54/285 (18%), Positives = 129/285 (44%), Gaps = 26/285 (9%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVE---EEEEVEDEEVEEV 67
++ + P+ + T + + F+ D+ +E+ + VE ++ + + +
Sbjct: 378 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYI 437
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHA-ELLALPPHGSEVYIGGIA 126
E + E + E+ E++ DG + + +T ++ ++++ + + + ++
Sbjct: 438 EFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLS 496
Query: 127 NNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKG 186
+ +EE L Q V E + + G+ KGYAF+ F + E A +A+ N E +G
Sbjct: 497 YSATEETL----QEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 552
Query: 187 KKIKC----------SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQS 236
+ I+ + SQ LF+ + + T E +K+ G + ++ D +
Sbjct: 553 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF----EGSVRARIVTD-RE 607
Query: 237 SGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
+G ++GF F+++ + A+ +++ M + +++ N T+ WA P+
Sbjct: 608 TGSSKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 650
Score = 57.0 bits (136), Expect = 5e-08
Identities = 60/272 (22%), Positives = 116/272 (42%), Gaps = 17/272 (6%)
Query: 5 PGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEE--VEEEEEVEDE 62
PG + A+ ++ + + + D DE+ + D D D++EE E+E V+ + +
Sbjct: 121 PGKKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKGVKPAKAA 180
Query: 63 EVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYI 122
E+E+EE++++E +++ D EEE D + +EV + A+ P V
Sbjct: 181 PAAPASEDEDEEDDDDEDDDD----DDEEEEEEDDSEEEVMEITPAKGKKTPAKVVPVKA 236
Query: 123 GGIA-NNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNN 181
+A +ED + E E E E + K K+ + ++
Sbjct: 237 KSVAEEEEDDEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKK---EMTKQKEA 293
Query: 182 SEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNR 241
E K +KI+ S LFIGN+ +V ++K ++++ +L +G NR
Sbjct: 294 PEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNR 350
Query: 242 GFAFIEYYN----HACAEYSRQKMSNSNFKLE 269
F ++++ + E + K+ + KLE
Sbjct: 351 KFGYVDFESAEDLEKALELTGLKVFGNEIKLE 382
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 60 EDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEM 93
E +++ +E EE+ E+EE+ E+ S GEEE+
Sbjct: 12 ESKKMAPPPKEVEEDSEDEEMSEDEDDSSGEEEV 45
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)
Length = 706
Score = 83.6 bits (205), Expect = 5e-16
Identities = 63/253 (24%), Positives = 118/253 (45%), Gaps = 17/253 (6%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEE 70
D + E + P K + + V N E+E E E+ E+E++ +DE+ E+ ++E
Sbjct: 199 DDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDE 258
Query: 71 EEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVS 130
++EEEEEEE EE K + G+ + + E KK P +++G + N S
Sbjct: 259 DDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKS 318
Query: 131 EEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIK 190
+L+ V +++ ++ + G + + +V F++ E +A+ EL + G +IK
Sbjct: 319 APELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 376
Query: 191 CSSSQAK--------HRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRG 242
+ K L N+P K T +++K+V D ++ + G+++G
Sbjct: 377 LEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAE-------IRLVSKDGKSKG 429
Query: 243 FAFIEYYNHACAE 255
A+IE+ A AE
Sbjct: 430 IAYIEFKTEADAE 442
Score = 60.8 bits (146), Expect = 4e-09
Identities = 55/277 (19%), Positives = 118/277 (41%), Gaps = 32/277 (11%)
Query: 27 EKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKP 86
EKP D + + D + + Y+ ++E + E+ E+ ++ + + E K
Sbjct: 378 EKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKT 437
Query: 87 SDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGG------------IANNVSEEDL 134
E+ + E++ + + ++ Y GG + +N+S
Sbjct: 438 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSAT 497
Query: 135 RVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKC--- 191
Q V E + + ++G+ KGYAF+ F + E A +A+ N E +G+ I+
Sbjct: 498 EETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 557
Query: 192 -------SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFA 244
+ SQ LF+ + + T E +K+ G + ++ D + +G ++GF
Sbjct: 558 GPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF----DGSVRARIVTD-RETGSSKGFG 612
Query: 245 FIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
F+++ + E +++ M + +++ N T+ WA P+
Sbjct: 613 FVDFNSE---EDAKEAMEDG--EIDGNKVTLDWAKPK 644
Score = 51.2 bits (121), Expect = 3e-06
Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 43/273 (15%)
Query: 17 PESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEV------EEE 70
P N + K DSDE+ D D + D+E++ +E E+E+E+E ++ E+E
Sbjct: 129 PAKGAKNGKNAKKEDSDEEEDDDSEEDEEDD--EDEDEDEDEIEPAAMKAAAAAPASEDE 186
Query: 71 EEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLAL------PPHGSEVYIGG 124
++E++E++E +++ + D EEE + KK A+++ + E
Sbjct: 187 DDEDDEDDEDDDDDEEDDSEEEAM---ETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDED 243
Query: 125 IANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEF 184
++ E+D + E E + + GK + KE+A Q E
Sbjct: 244 EDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGK-------RKKEMAKQKAA----PEA 292
Query: 185 KGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADV----GPGVISIELLKDLQSSGRN 240
K +K++ + LF+GN+ + ++K ++DV V+ + + G
Sbjct: 293 KKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRI-------GMT 345
Query: 241 RGFAFIEYYN----HACAEYSRQKMSNSNFKLE 269
R F ++++ + E + K+ + KLE
Sbjct: 346 RKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 378
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)
Length = 706
Score = 80.9 bits (198), Expect = 3e-15
Identities = 64/270 (23%), Positives = 126/270 (45%), Gaps = 39/270 (14%)
Query: 17 PESPEGNSEPEKPTDSDEQVDFDGDNDQEEE------------------------IEYEE 52
P +P E + + DE+ D + + D EE + EE
Sbjct: 183 PAAPASEDEEDDEDEDDEEDDDEEEEDDSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEE 242
Query: 53 VEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLA 112
+EEE+ +DE+ ++ EE++E+++EEEE EE K + G+ + + + E KK +
Sbjct: 243 DDEEEDEDDEDEDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGS 302
Query: 113 LPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELA 172
P ++IG + N S +L+ + +++ ++ + +G + + +V F++ E
Sbjct: 303 EPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDL 361
Query: 173 SQAIE----ELNNSEFKGKKIKCSSS---QAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 225
+A+E ++ +E K +K K S +A L N+ T +++K+V D
Sbjct: 362 EKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED----A 417
Query: 226 ISIELLKDLQSSGRNRGFAFIEYYNHACAE 255
+ I L + G+++G A+IE+ + A AE
Sbjct: 418 MEIRL---VSQDGKSKGIAYIEFKSEADAE 444
Score = 63.2 bits (152), Expect = 7e-10
Identities = 53/280 (18%), Positives = 129/280 (45%), Gaps = 20/280 (7%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVE---EEEEVEDEEVEEV 67
++ + P+ + T + + F+ D+ +E+ + +E ++ + + + +
Sbjct: 376 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYI 435
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIAN 127
E + E + E+ E++ DG + + +T ++ ++++ + S+ + +
Sbjct: 436 EFKSEADAEKNLEEKQGAEIDGRS-VSLYYTGEKGQRQERTGKTSTWSGESKTLV---LS 491
Query: 128 NVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGK 187
N+S + + V E + + G+ KGYAF+ F + E A +A+ N E +G+
Sbjct: 492 NLSYSATKETLEEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGR 551
Query: 188 KIKC------SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNR 241
I+ S SQ LF+ + + T E +K+ G + ++ D + +G ++
Sbjct: 552 TIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESF----EGSVRARIVTD-RETGSSK 606
Query: 242 GFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
GF F+++ + A+ +++ M + +++ N T+ WA P+
Sbjct: 607 GFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 644
Score = 55.5 bits (132), Expect = 2e-07
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 31/271 (11%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE----- 68
A P N + K DSDE D + ++D +E+ E+ EEE+E E V+ V+
Sbjct: 126 AATPAKGAKNGKNAKKEDSDEDEDEEDEDDSDED---EDDEEEDEFEPPIVKGVKPAKAA 182
Query: 69 ------EEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYI 122
E+EE++E+E++ E++ + + + E V KK A+++ +
Sbjct: 183 PAAPASEDEEDDEDEDDEEDDDEEEEDDSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEE 242
Query: 123 GGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNS 182
+ +ED E + +E E A + KE+ Q
Sbjct: 243 DDEEEDEDDED------EDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQK----EAP 292
Query: 183 EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRG 242
E K +K++ S LFIGN+ +V ++K ++++ +L +G NR
Sbjct: 293 EAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISEL---FAKNDLAVVDVRTGTNRK 349
Query: 243 FAFIEYYN----HACAEYSRQKMSNSNFKLE 269
F ++++ + E + K+ + KLE
Sbjct: 350 FGYVDFESAEDLEKALELTGLKVFGNEIKLE 380
Score = 30.0 bits (66), Expect = 6.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 60 EDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEM 93
E +++ +E EE+ E+EE+ E+ S GEEE+
Sbjct: 12 EAKKMAPPPKEVEEDSEDEEMSEDEDDSSGEEEV 45
>GAR2_SCHPO (P41891) Protein gar2
Length = 500
Score = 80.5 bits (197), Expect = 4e-15
Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 50/313 (15%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEE---EIEYEEVEEEEEVEDEEVE 65
+++ ++++ S E E E +E+ + D+ E E E E E E E+E VE
Sbjct: 133 KKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVE 192
Query: 66 EVEEEEE---EEEEEEEVEEESKPSDGEEEMRVD---HTNDEVEKKKHAE--------LL 111
+ EE++E E + E +S G+ + D ++ E EKK+ AE +
Sbjct: 193 KTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKI 252
Query: 112 ALPPHGSE----VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFK 167
P S V++G ++ NV ++ L + G + R++ +SG KGY +V F+
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Query: 168 TKELASQAIEELNNSEFKGKKIKC-----------------------SSSQAKHRLFIGN 204
T E A A+ E G+ + S+ +F+GN
Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGN 372
Query: 205 IPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYN----HACAEYSRQK 260
+ T +D+ G + SI L D Q SGR +GF ++ + + C E +
Sbjct: 373 LSFNATEDDLSTAFGGCG-DIQSIRLPTDPQ-SGRLKGFGYVTFSDIDSAKKCVEMNGHF 430
Query: 261 MSNSNFKLENNAP 273
++ +L+ + P
Sbjct: 431 IAGRPCRLDFSTP 443
Score = 46.2 bits (108), Expect = 9e-05
Identities = 55/294 (18%), Positives = 117/294 (39%), Gaps = 32/294 (10%)
Query: 5 PGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEV 64
P ++ V Q + S E ++S ++ E E E E
Sbjct: 64 PEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESE 123
Query: 65 EEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGG 124
EEV + EE++E S S+ EEE V ++E+KK + + S
Sbjct: 124 EEVIVKTEEKKESSSESSSSSESEEEEEAVV-----KIEEKKESSSDSSSESSSSESESE 178
Query: 125 IANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEF 184
+++ SEE+ V V + E + ++ S + + + + ++ + S + E +S
Sbjct: 179 SSSSESEEEEEV----VEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSE 234
Query: 185 KGKKIKCSSSQAKH---------------RLFIGNIPKKWTVED--MKKVVADVGPGVIS 227
KK K + + +F+G + W V+D + + + G ++
Sbjct: 235 DEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRL--SWNVDDQWLGQEFEEYGT-IVG 291
Query: 228 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPR 281
++ D Q SGR++G+ ++++ A+ + +N +++ + ++PR
Sbjct: 292 ARVIMDGQ-SGRSKGYGYVDFETPEAAKAA--VAANGTKEIDGRMVNLDLSNPR 342
>RBMT_HUMAN (Q9NW13) RNA-binding protein 28 (RNA binding motif
protein 28)
Length = 758
Score = 77.0 bits (188), Expect = 5e-14
Identities = 53/202 (26%), Positives = 95/202 (46%), Gaps = 25/202 (12%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE----- 68
+++ ES + E+ + +E D D D+D+E+ + +E EEEE +E + + V+
Sbjct: 211 SKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKRA 270
Query: 69 -------EEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDE-------VEKKKHAELLALP 114
+ + EE+ ++EE DGEE + D + +E V KK +L +
Sbjct: 271 VKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDV 330
Query: 115 PHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQ 174
G V+I ++ + EE+L Q GE+ VRI+ ++ KG AF F T+E A +
Sbjct: 331 NEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390
Query: 175 AI------EELNNSEFKGKKIK 190
+ E + G+++K
Sbjct: 391 CLLAASPENEAGGLKLDGRQLK 412
Score = 48.1 bits (113), Expect = 2e-05
Identities = 44/192 (22%), Positives = 78/192 (39%), Gaps = 35/192 (18%)
Query: 117 GSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAI 176
G +++G + + E L VG V + ++ K S +G+ +V F E +A+
Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61
Query: 177 EEL------------------NNSEFKGKKI------------KCSSSQAKHRLFIGNIP 206
+E+ N ++ KGK K + K RL I N+
Sbjct: 62 KEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLS 121
Query: 207 KKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF 266
K + +D+K V A G V+ + + + + G+ RGF F+++ N A + + M+
Sbjct: 122 FKCSEDDLKTVFAQFG-AVLEVNIPR--KPDGKMRGFGFVQFKNLLEAGKALKGMNMKEI 178
Query: 267 KLENNAPTVSWA 278
K V WA
Sbjct: 179 K--GRTVAVDWA 188
Score = 44.3 bits (103), Expect = 4e-04
Identities = 30/102 (29%), Positives = 51/102 (49%), Gaps = 2/102 (1%)
Query: 99 NDEVEKKK-HAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 157
N E KK+ A+ + + + I ++ SE+DL+ G V EV I + K G+
Sbjct: 93 NSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGK 151
Query: 158 GKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHR 199
+G+ FV FK A +A++ +N E KG+ + + AK +
Sbjct: 152 MRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 193
Score = 35.0 bits (79), Expect = 0.21
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 53 VEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVE---KKKHAE 109
+ EE+ E + E V+++ EEE+ EE E + D +EE V DE E + K +
Sbjct: 203 IGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTK 262
Query: 110 LLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTK 169
+ + + +++ SEED S++ + + GE + + T+
Sbjct: 263 PVQIQKRAVKRPAPAKSSDHSEED-----------SDLEESDSIDDGEELAQSDTS--TE 309
Query: 170 ELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP-GVISI 228
E +A++ N K +K+ ++ K +FI N+ E++ +++ G + I
Sbjct: 310 EQEDKAVQVSNK---KKRKLPSDVNEGK-TVFIRNLSFDSEEEELGELLQQFGELKYVRI 365
Query: 229 ELLKDLQSSGRNRGFAFIEYYNHACAE 255
L D + S +G AF ++ A+
Sbjct: 366 VLHPDTEHS---KGCAFAQFMTQEAAQ 389
>RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase
regulator-interacting protein 1 (RPGR-interacting
protein 1)
Length = 1331
Score = 76.3 bits (186), Expect = 8e-14
Identities = 41/90 (45%), Positives = 55/90 (60%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEE 73
A+ PE E E + +E+V+ + + ++EEE EE EEEEE E EE EE EEE+EE
Sbjct: 904 AEKPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEE 963
Query: 74 EEEEEEVEEESKPSDGEEEMRVDHTNDEVE 103
EEEE+E EEE + + EEE D D +E
Sbjct: 964 EEEEDEKEEEEEEEEEEEEEEEDENKDVLE 993
Score = 73.2 bits (178), Expect = 7e-13
Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 19 SPEG--NSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEE 76
+PEG SE EKP E+ + +G ++ +E E EE EEEEE E+E EE EEEEEEE E
Sbjct: 895 APEGFQMSEAEKP--EGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEERE 952
Query: 77 EEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
EEE +EE K + EE+ + + +E E+++ E
Sbjct: 953 EEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEEE 985
Score = 65.1 bits (157), Expect = 2e-10
Identities = 34/81 (41%), Positives = 50/81 (60%)
Query: 3 KMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDE 62
K G + + + E E E+ + +E+V + + ++EEE E EE +EEE+ E+E
Sbjct: 906 KPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEE 965
Query: 63 EVEEVEEEEEEEEEEEEVEEE 83
E +E EEEEEEEEEEEE EE+
Sbjct: 966 EEDEKEEEEEEEEEEEEEEED 986
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 18 ESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEE 77
E E E E+ + E+ + + + ++EEE E EE +EEEE EDE+ EE EEEEEEEEEE
Sbjct: 925 EVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEE 984
Query: 78 EEVEEESKPSDGEEEMRVDHTNDEV 102
E+ ++ + EE + D++
Sbjct: 985 EDENKDVLEASFTEEWVPFFSQDQI 1009
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/76 (36%), Positives = 46/76 (59%), Gaps = 3/76 (3%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEE---VEDEEVE 65
+ +V + E E E E+ +++ + + + ++EEE E E+ EEEEE E+EE E
Sbjct: 918 EEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEE 977
Query: 66 EVEEEEEEEEEEEEVE 81
E EEEEEE+E ++ +E
Sbjct: 978 EEEEEEEEDENKDVLE 993
Score = 47.0 bits (110), Expect = 5e-05
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 15 QNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEE 74
+ E E E E+ + + + + + + ++EEE E +E EEEEE E+EE EE EE+E ++
Sbjct: 932 EEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEE-EEEEEEEEEEDENKD 990
Query: 75 EEEEEVEEESKPSDGEEEM 93
E EE P ++++
Sbjct: 991 VLEASFTEEWVPFFSQDQI 1009
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
+ +V + E E E E+ + +++ + + D +EEE E EE EEEEE E+++V E
Sbjct: 936 EEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEEEDENKDVLEAS 995
Query: 69 EEEE------EEE--------EEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
EE +++ E + E+ KP E+ +H ++KH++
Sbjct: 996 FTEEWVPFFSQDQIASTEIPIEAGQYPEKRKPPVIAEKKEREHQVASYSRRKHSK 1050
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 35 QVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMR 94
Q+D+ E + E E+ E E EE EE +EEE EEEE EEE + EE+
Sbjct: 886 QLDWKSHYLAPEGFQMSEAEKPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEE 945
Query: 95 VDHTNDEVEKKKHAE 109
+ E E++K E
Sbjct: 946 EEEEEREEEEEKEEE 960
>IE68_SHV21 (Q01042) Immediate-early protein
Length = 407
Score = 73.6 bits (179), Expect = 5e-13
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEE-EEEVEDEEVEEV 67
+R+ + EG E E +++E+ +E+E E EE EE EEE E+EE EE
Sbjct: 73 ERERRGEEEREGEGGEEGEGREEAEEE------EAEEKEAEEEEAEEAEEEAEEEEAEEA 126
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIAN 127
E EEEE EEEE EEE++ ++ EE + +E E ++ AE A +E A
Sbjct: 127 EAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAE 186
Query: 128 NVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEE 178
E + + E +E +A+E E A A + +E A +A EE
Sbjct: 187 EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEAEEAEEE 237
Score = 62.8 bits (151), Expect = 1e-09
Identities = 64/234 (27%), Positives = 103/234 (43%), Gaps = 37/234 (15%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDND---QEEEIEYEEVEEEEEVEDEEVEEVEEE 70
A+ E+ E +E E+ +++E+ + + + +EEE E EE EEEE E EE EE EE
Sbjct: 96 AEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEEEEAEEEEAEEEEAEEAEE-EEAEEA 154
Query: 71 EEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVS 130
EEE EEEE EEE++ E E + +E E+ + AE +E +
Sbjct: 155 EEE-AEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEAE---------EA 204
Query: 131 EEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIK 190
EE+ + E E A+E+ E + A A + +E A + L + + G+K
Sbjct: 205 EEEAEEAEEEAEEAEE-----AEEAEEAEEEAEEAEEEEEEAGPSTPRLPHYKVVGQKPS 259
Query: 191 ---------CSSSQAKHRLFI-------GNIPKKWTVEDMKKVVADVGPGVISI 228
C Q +HR + +PKK+ + K + P V+ +
Sbjct: 260 TQPGGVPKLCLKMQPQHRSRLPKGKQSHDKVPKKYQARN--KFFSQAAPSVLDL 311
Score = 60.8 bits (146), Expect = 4e-09
Identities = 49/154 (31%), Positives = 73/154 (46%), Gaps = 10/154 (6%)
Query: 34 EQVDFDGDNDQ---EEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGE 90
E+V+ +G+ + EEE E E EE E E+ E EE EE+E EEEE EE EEE++ + E
Sbjct: 65 EEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEEEEAEEAEEEAEEEEAE 124
Query: 91 E-EMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRI 149
E E + +E +++ AE E EE+ + E +E
Sbjct: 125 EAEAEEEEAEEEEAEEEEAE------EAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAE 178
Query: 150 MKAKESGEGKGYAFVAFKTKELASQAIEELNNSE 183
+A+E E A A + +E A +A EE +E
Sbjct: 179 EEAEEEAEEAEEAEEAEEAEEEAEEAEEEAEEAE 212
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
+ + + E E E E+ + + + + + +E E E EE EEE E +EE EE E
Sbjct: 160 EEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAE 219
Query: 69 EEEEEEEEEEEVE--EESKPSDGEEEMRVDH 97
E EE EE EEE E EE + G R+ H
Sbjct: 220 EAEEAEEAEEEAEEAEEEEEEAGPSTPRLPH 250
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor
Length = 315
Score = 72.8 bits (177), Expect = 9e-13
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 70 EEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNV 129
E EE EEE E+ GE +DEVE + E PP +++++G + +V
Sbjct: 96 EPSGEETEEEGFVEAVGDAGE--------SDEVEADEEEEEFQEPPEDAKLFVGNLPYDV 147
Query: 130 SEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKI 189
E L + G V ++ +++ + +G+ FV T E A +A+E N + G+ +
Sbjct: 148 DSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLL 207
Query: 190 KCSSS--------------QAKHRLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKD 233
+ + + +R+++GNIP W ++D ++++ ++ G V+S ++ D
Sbjct: 208 TVNKAARRGERPERPPRTFEQSYRIYVGNIP--WGIDDARLEQLFSEHGK-VVSARVVYD 264
Query: 234 LQSSGRNRGFAFIEYYNHA 252
+ +GR+RGF F+ + A
Sbjct: 265 -RETGRSRGFGFVTMASEA 282
Score = 45.1 bits (105), Expect = 2e-04
Identities = 49/218 (22%), Positives = 84/218 (38%), Gaps = 41/218 (18%)
Query: 23 NSEPE-KPTDSDEQVDFDGDNDQEEEIEYEEVEEE--EEVEDE----------------- 62
N EP + T+ + V+ GD + +E+E +E EEE E ED
Sbjct: 94 NFEPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLA 153
Query: 63 ---------EVEEVEEEEEEEEEE-------EEVEEESKPSDGEEEMRVDHTNDEVEKK- 105
E+ EV + ++ VEE K + V+ V K
Sbjct: 154 RLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAA 213
Query: 106 KHAELLALPPHGSE----VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGY 161
+ E PP E +Y+G I + + L G+V R++ +E+G +G+
Sbjct: 214 RRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273
Query: 162 AFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHR 199
FV ++ S AI L+ G+ I+ + ++ + R
Sbjct: 274 GFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSR 311
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 71.6 bits (174), Expect = 2e-12
Identities = 40/107 (37%), Positives = 57/107 (52%)
Query: 3 KMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDE 62
KM + ++ Q E + + E +E + D ++ EE E EE EEEEE E+E
Sbjct: 530 KMAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEE 589
Query: 63 EVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
E EE EEEEEEEEEEE+ +EE + E+E + D+ E+ E
Sbjct: 590 EEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEE 636
Score = 70.1 bits (170), Expect = 6e-12
Identities = 34/92 (36%), Positives = 58/92 (62%)
Query: 18 ESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEE 77
ES E E ++ + +E+V+ D + ++EEE E EE EEEEE E+EE EE EE+E+EE+E+
Sbjct: 554 ESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDED 613
Query: 78 EEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
+ E+E + E++ D ++ +++ E
Sbjct: 614 DAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDE 645
Score = 67.8 bits (164), Expect = 3e-11
Identities = 38/100 (38%), Positives = 54/100 (54%)
Query: 2 HKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVED 61
HK + + Q + + + ++ + ++ + D+EE E EE EEEEE E+
Sbjct: 527 HKKKMAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEE 586
Query: 62 EEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDE 101
EE EE EEEEEEEEEEEE +E+ + D EE D DE
Sbjct: 587 EEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDE 626
Score = 65.1 bits (157), Expect = 2e-10
Identities = 31/100 (31%), Positives = 60/100 (60%)
Query: 10 RDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEE 69
++V ++ E E E E+ + +E+ + + + ++EEE E EE EEEEE +++E +E +
Sbjct: 556 KEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDA 615
Query: 70 EEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
EE+E++ EE+ ++ + D E++ D DE E ++ E
Sbjct: 616 EEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEE 655
Score = 65.1 bits (157), Expect = 2e-10
Identities = 31/101 (30%), Positives = 61/101 (59%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
+++ + + E + E E+ + DE+ + + + ++EEE E EE EEEEE E+EE E+ E
Sbjct: 551 KKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEE 610
Query: 69 EEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
+E++ EE+E++ EE+ ++ +++ D D+ E + E
Sbjct: 611 DEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDE 651
Score = 63.5 bits (153), Expect = 6e-10
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 8 RQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEV 67
++ D ++ E E + E ++ + E+ + + + ++EEE E EE EEEEE E+EE EE
Sbjct: 547 KEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEED 606
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDE 101
E+EE+E++ EE+ ++ + D EE + +DE
Sbjct: 607 EDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDE 640
Score = 62.8 bits (151), Expect = 1e-09
Identities = 30/100 (30%), Positives = 58/100 (58%)
Query: 10 RDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEE 69
++V E E E E+ + +E+ + + + ++EEE E EE E+EE+ +D E +E +
Sbjct: 563 KEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDA 622
Query: 70 EEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
EE+E++ EE+ +EE + ++E + DE E+++ E
Sbjct: 623 EEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEE 662
Score = 61.2 bits (147), Expect = 3e-09
Identities = 28/91 (30%), Positives = 56/91 (60%), Gaps = 3/91 (3%)
Query: 15 QNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEE 74
+ E E E E+ + +E+ + + D D+E+E + EE E++ E ++++ EE ++EE+++
Sbjct: 580 EEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDD 639
Query: 75 EEEEEVEEESKPSDGEEEMRVDHTNDEVEKK 105
EE+++ +E+ D EEE + +E EKK
Sbjct: 640 EEDDDEDEDEDEEDEEEE---EEEEEESEKK 667
Score = 60.5 bits (145), Expect = 5e-09
Identities = 26/80 (32%), Positives = 52/80 (64%)
Query: 15 QNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEE 74
+ E E E E+ D DE+ + D + D+++ E E+ EE++ E+++ EE ++E+E+E
Sbjct: 590 EEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDE 649
Query: 75 EEEEEVEEESKPSDGEEEMR 94
+EE+E EEE + + E++++
Sbjct: 650 DEEDEEEEEEEEEESEKKIK 669
Score = 57.8 bits (138), Expect = 3e-08
Identities = 25/81 (30%), Positives = 50/81 (60%)
Query: 15 QNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEE 74
+ E E E E+ + DE + + D +++E+ E+ ++ EE +DEE ++ E+++E+E
Sbjct: 588 EEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDE 647
Query: 75 EEEEEVEEESKPSDGEEEMRV 95
+E+EE EEE + + E E ++
Sbjct: 648 DEDEEDEEEEEEEEEESEKKI 668
Score = 45.4 bits (106), Expect = 2e-04
Identities = 49/234 (20%), Positives = 98/234 (40%), Gaps = 7/234 (2%)
Query: 7 TRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEE 66
T+ D + + E + + E D++ + + +E+ + E+ ++++E ++++ +E
Sbjct: 235 TKDNDKENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQE 294
Query: 67 VEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKH----AELLALPPHGSEVYI 122
E +++E++E ++ E+E K E+ R E +KKKH E + P SE
Sbjct: 295 KERKKQEKKERKQKEKEMKKQKKIEKERKKKEEKEKKKKKHDKENEETMQQPDQTSEETN 354
Query: 123 GGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNS 182
I + V + E + + KE +G +E + +
Sbjct: 355 NEIMVPLPSPLTDVTTPEEHKEGEHKEEEHKEGEHKEGEHKEEEHKEEEHKKEEHKSKEH 414
Query: 183 EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQS 236
+ KGKK K + KH+ KK V K V+ D + I L+D ++
Sbjct: 415 KSKGKKDKGKKDKGKHKKAKKEKVKKHVV---KNVIEDEDKDGVEIINLEDKEA 465
Score = 42.7 bits (99), Expect = 0.001
Identities = 23/77 (29%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 39 DGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEE------EEEEEVEEESKPSDGEEE 92
D + +IE E+++++ V+ EE ++ E +E +E E+EEEVEE+ + + EEE
Sbjct: 525 DNHKKKMAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEE 584
Query: 93 MRVDHTNDEVEKKKHAE 109
+ +E E+++ E
Sbjct: 585 EEEEEEEEEEEEEEEEE 601
Score = 42.4 bits (98), Expect = 0.001
Identities = 19/64 (29%), Positives = 38/64 (58%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
+ D ++ + E + + + + D + D D ++D EE+ + +E E+EE+ E+EE EE E
Sbjct: 604 EEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEE 663
Query: 69 EEEE 72
E++
Sbjct: 664 SEKK 667
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/55 (32%), Positives = 33/55 (59%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVE 68
A+ E E + D DE+ D + D+D++E+ + E+ EEEEE E+E ++++
Sbjct: 615 AEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEESEKKIK 669
Score = 37.0 bits (84), Expect = 0.056
Identities = 20/87 (22%), Positives = 54/87 (61%), Gaps = 8/87 (9%)
Query: 32 SDEQVDFDGDN---DQEEEIEYEEV-----EEEEEVEDEEVEEVEEEEEEEEEEEEVEEE 83
S++ D D +N D++E+ + EE+ ++E + +++E++E E+ E++++++EE E++
Sbjct: 232 SNDTKDNDKENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKK 291
Query: 84 SKPSDGEEEMRVDHTNDEVEKKKHAEL 110
+ + +++ + + E E KK ++
Sbjct: 292 KQEKERKKQEKKERKQKEKEMKKQKKI 318
Score = 33.9 bits (76), Expect = 0.48
Identities = 18/102 (17%), Positives = 57/102 (55%)
Query: 1 MHKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVE 60
M K ++R + + E + +K + E+ + + ++E+ E ++ E+E + +
Sbjct: 256 MLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQEKERKKQEKKERKQKEKEMKKQ 315
Query: 61 DEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEV 102
+ +E +++EE+E+++++ ++E++ + + + + TN+E+
Sbjct: 316 KKIEKERKKKEEKEKKKKKHDKENEETMQQPDQTSEETNNEI 357
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/95 (23%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 18 ESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDE--EVEEVEEEEEEEE 75
E+ + +K S+++ + D+ QEE ++ + +E ++ E E E E++E++++++E
Sbjct: 230 ETSNDTKDNDKENISEDKKE---DHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQE 286
Query: 76 E-EEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
E E++ +E+ + ++E + E++K+K E
Sbjct: 287 EKEKKKQEKERKKQEKKERK--QKEKEMKKQKKIE 319
Score = 29.6 bits (65), Expect = 9.0
Identities = 37/197 (18%), Positives = 82/197 (40%), Gaps = 28/197 (14%)
Query: 2 HKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVED 61
HK ++ + + +S E S+ +K D ++ ++E+++ V+ E ED
Sbjct: 394 HKEEEHKEEEHKKEEHKSKEHKSKGKK--DKGKKDKGKHKKAKKEKVKKHVVKNVIEDED 451
Query: 62 EE-VEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEV 120
++ VE + E++E EE+ + ES+P + +D K
Sbjct: 452 KDGVEIINLEDKEACEEQHITVESRPLSQPQCKLIDEPEQLTLMDK-------------- 497
Query: 121 YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELN 180
+ V E++L + Q +G + V ++ +++ + K K +E Q + ++
Sbjct: 498 ------SKVEEKNLSIQEQLIGTIGRVNVVPRRDNHKKK-----MAKIEEAELQKQKHVD 546
Query: 181 NSEFKGKKIKCSSSQAK 197
E K ++ K ++K
Sbjct: 547 KEEDKKEESKEVQEESK 563
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor
Length = 324
Score = 71.2 bits (173), Expect = 3e-12
Identities = 57/220 (25%), Positives = 96/220 (42%), Gaps = 56/220 (25%)
Query: 53 VEEEEEVEDEEVE-EVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELL 111
VE +E ++EEV EEEEE EE+EE VE ES
Sbjct: 78 VEVVQEDDEEEVALSAEEEEEIEEKEERVESESV-------------------------- 111
Query: 112 ALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKEL 171
G +Y+G + +++ L G V+ V I+ + + +G+AFV + E
Sbjct: 112 ----EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167
Query: 172 ASQAIEELNNSEFKGKKIKCSSSQ-----------------------AKHRLFIGNIPKK 208
A +AI + S+ G+ +K + + + H+L++ N+
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 227
Query: 209 WTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 248
T + ++ AD PG +S +++ D +SSGR+RGF FI +
Sbjct: 228 LTSQGLRDAFAD-QPGFMSAKVIYD-RSSGRSRGFGFITF 265
Score = 37.7 bits (86), Expect = 0.033
Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 115 PHGSEVYIGGIANNVSEEDLR-VFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELAS 173
PH ++Y+ ++ ++ + LR F G +S +++ + SG +G+ F+ F + E +
Sbjct: 216 PH--KLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMN 272
Query: 174 QAIEELNNSEFKGKKIKCSSSQAK 197
A++ +N E +G+ ++ + + K
Sbjct: 273 SALDTMNEVELEGRPLRLNVAGQK 296
>TRT_DROME (P19351) Troponin T, skeletal muscle (Upheld protein)
(Intended thorax protein)
Length = 396
Score = 70.5 bits (171), Expect = 5e-12
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 14 AQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEE 73
A PE+PEG E+ +DE + D + +EE +E E+ E+EE+ E+EE EE EEEEEE
Sbjct: 326 AGEPETPEG----EEDAKADEDIVEDDEEVEEEVVEEEDEEDEEDEEEEEEEEEEEEEEE 381
Query: 74 EEEEEEVEEESKPSD 88
EEEEEE EEE + +
Sbjct: 382 EEEEEEEEEEEEEEE 396
Score = 59.3 bits (142), Expect = 1e-08
Identities = 32/67 (47%), Positives = 42/67 (61%)
Query: 26 PEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESK 85
P K E + + D +E+I ++ E EEEV +EE EE EE+EEEEEEEEE EEE +
Sbjct: 322 PGKKAGEPETPEGEEDAKADEDIVEDDEEVEEEVVEEEDEEDEEDEEEEEEEEEEEEEEE 381
Query: 86 PSDGEEE 92
+ EEE
Sbjct: 382 EEEEEEE 388
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/70 (37%), Positives = 42/70 (59%)
Query: 40 GDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTN 99
G+ + E E + +E+ +DEEVEE EEE+EE+EE+ EEE + + EEE +
Sbjct: 327 GEPETPEGEEDAKADEDIVEDDEEVEEEVVEEEDEEDEEDEEEEEEEEEEEEEEEEEEEE 386
Query: 100 DEVEKKKHAE 109
+E E+++ E
Sbjct: 387 EEEEEEEEEE 396
Score = 43.5 bits (101), Expect = 6e-04
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 7 TRQRDVTAQNPESPEGNSE-----PEKPTDSDEQV-----DFDGDNDQEEEIEYEEVEEE 56
TR+ Q P EG+ E +K +D D+Q+ ++ +EE+ E ++++E+
Sbjct: 18 TREETKPPQTPAEGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEED-ELKKLKEK 76
Query: 57 E------EVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAEL 110
+ E+E+ ++EEEE E EE+ + E+ MR+ +E EKK+ A L
Sbjct: 77 QAKRKVTRAEEEQKMAQRKKEEEERRVREAEEKKQREIEEKAMRL----EEAEKKRQAML 132
Query: 111 LALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKE 170
A+ + G ++++D V S + K KE E + ++F+ K
Sbjct: 133 QAMKDKDKK----GPNFTIAKKDAGVLGLSSAAMER---NKTKEQLEEEKKISLSFRIKP 185
Query: 171 LASQAIEE 178
LA + E
Sbjct: 186 LAIEGFAE 193
Score = 40.0 bits (92), Expect = 0.007
Identities = 20/53 (37%), Positives = 31/53 (57%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEE 63
D+ + E E E E D +++ + + + ++EEE E EE EEEEE E+EE
Sbjct: 343 DIVEDDEEVEEEVVEEEDEEDEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
Score = 30.4 bits (67), Expect = 5.3
Identities = 14/47 (29%), Positives = 27/47 (56%)
Query: 11 DVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEE 57
+V + E + E ++ + +E+ + + + ++EEE E EE EEEE
Sbjct: 350 EVEEEVVEEEDEEDEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
>S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding
protein)
Length = 738
Score = 68.6 bits (166), Expect = 2e-11
Identities = 36/95 (37%), Positives = 57/95 (59%), Gaps = 6/95 (6%)
Query: 13 TAQNPESPEGNSEP------EKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEE 66
T + S +GN+ E+ + DE+VD DGD+D+E + + EE E+EEE E+EE EE
Sbjct: 185 TGSSASSEQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEE 244
Query: 67 VEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDE 101
EEEEEEE E++E +++ + +D + + E
Sbjct: 245 EEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE 279
Score = 67.4 bits (163), Expect = 4e-11
Identities = 60/180 (33%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 21 EGNSEP---EKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVE-----DEEVEEVEEEEE 72
EGNSE + T S + + + EEE E+VEE+EEV+ DEEV+E EEEE
Sbjct: 173 EGNSEEYGSDHETGSSASSEQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEE 232
Query: 73 EEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEE 132
+EEE+EE E+E + + EEE D + + E + GSE +VS
Sbjct: 233 DEEEDEEEEDEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE--------SVSFT 284
Query: 133 DLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCS 192
D V S + S+ K KE +G + + F S A E SE K +K+ S
Sbjct: 285 DGSVRSGSGTDGSD---EKKKERKRARGISPIVFDRS--GSSASESYAGSEKKHEKLSSS 339
Score = 44.7 bits (104), Expect = 3e-04
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 9 QRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEE-EEVEDEEVEEV 67
+ DV +G+ + E D++E+ D + D ++E+E E EE EEE E+ E ++ EE
Sbjct: 205 EEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQDERDQKEEG 264
Query: 68 EEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPP 115
+ + E + E +DG + +KK+ + P
Sbjct: 265 NDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISP 312
Score = 37.0 bits (84), Expect = 0.056
Identities = 28/107 (26%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Query: 5 PGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEE--EIEYEEVEEEEEVEDE 62
P R+RD + + +SP + + D + + +EE EY E
Sbjct: 133 PCLRKRD-SERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASS 191
Query: 63 EVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAE 109
E E EEE EE+ E+E DG+++ VD +E E ++ E
Sbjct: 192 EQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDE 238
>ELV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR)
(Elav-like generic protein) (MelG)
Length = 326
Score = 68.6 bits (166), Expect = 2e-11
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 118 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIE 177
+ + + + N+++E+LR S+GEV ++++ K +G GY FV + T + A +AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 178 ELNNSEFKGKKIKCSSSQAKH------RLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 231
LN + K IK S ++ L+I +P+ T +D++ + + G +I+ +L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVL 138
Query: 232 KDLQSSGRNRGFAFIEYYNHACAE 255
D Q++G +RG AFI + + AE
Sbjct: 139 VD-QTTGLSRGVAFIRFDKRSEAE 161
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.303 0.125 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,352,504
Number of Sequences: 164201
Number of extensions: 1956150
Number of successful extensions: 85521
Number of sequences better than 10.0: 2893
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 1000
Number of HSP's that attempted gapping in prelim test: 22512
Number of HSP's gapped (non-prelim): 21162
length of query: 289
length of database: 59,974,054
effective HSP length: 109
effective length of query: 180
effective length of database: 42,076,145
effective search space: 7573706100
effective search space used: 7573706100
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0010.10