BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0009.6
         (309 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPOA_SYNEL (Q8DML0) DNA-directed RNA polymerase alpha chain (EC ...    30  5.8

>RPOA_SYNEL (Q8DML0) DNA-directed RNA polymerase alpha chain (EC
           2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha
           chain) (RNA polymerase alpha subunit)
          Length = 321

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 15/59 (25%), Positives = 32/59 (53%), Gaps = 1/59 (1%)

Query: 142 GARVKNVNRTTINHALITRSVFINQTLVPVSLELKDTVVRAYRTDPVQRFLYQRVPKNE 200
           G+ V  V    +NH   T    + + ++ + L++K  V+R++ ++P    L+ + P+NE
Sbjct: 49  GSAVTAVRIAGVNHEFSTIPG-VREDVMDILLQMKQLVIRSHTSEPQMGRLFAQAPENE 106


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,990,545
Number of Sequences: 164201
Number of extensions: 1459960
Number of successful extensions: 3021
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3021
Number of HSP's gapped (non-prelim): 1
length of query: 309
length of database: 59,974,054
effective HSP length: 110
effective length of query: 199
effective length of database: 41,911,944
effective search space: 8340476856
effective search space used: 8340476856
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)