BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.9
(276 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TFAM_HUMAN (Q00059) Transcription factor A, mitochondrial precur... 35 0.20
ADHA_UROHA (P25405) Alcohol dehydrogenase I-A (EC 1.1.1.1) (ADH IA) 34 0.44
ADH1_NAJNA (P80512) Alcohol dehydrogenase 1 (EC 1.1.1.1) 33 0.76
SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7) 33 0.99
YC94_MYCPN (P75483) Hypothetical protein MPN294 (H10_orf206) 32 1.3
SOX7_HUMAN (Q9BT81) Transcription factor SOX-7 32 1.3
HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1 32 1.3
TFAM_RAT (Q91ZW1) Transcription factor A, mitochondrial precurso... 31 2.9
IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2 31 2.9
SX17_MOUSE (Q61473) Transcription factor SOX-17 31 3.8
SX17_HUMAN (Q9H6I2) Transcription factor SOX-17 31 3.8
SPEN_DROME (Q8SX83) Split ends protein 30 4.9
CG23_SCHPO (P10815) G2/mitotic-specific cyclin cdc13 30 4.9
ADH_PAPHA (P14139) Alcohol dehydrogenase (EC 1.1.1.1) (ADH) 30 4.9
ADHB_HUMAN (P00325) Alcohol dehydrogenase beta chain (EC 1.1.1.1) 30 4.9
ADHA_PERMA (P41680) Alcohol dehydrogenase A chain (EC 1.1.1.1) 30 4.9
ADH3_COTJA (P19631) Alcohol dehydrogenase alpha chain (EC 1.1.1.... 30 4.9
ADH1_STRCA (P80338) Alcohol dehydrogenase I (EC 1.1.1.1) 30 4.9
ADH1_CHICK (P23991) Alcohol dehydrogenase I (EC 1.1.1.1) 30 4.9
TFAM_MOUSE (P40630) Transcription factor A, mitochondrial precur... 30 6.4
>TFAM_HUMAN (Q00059) Transcription factor A, mitochondrial precursor
(mtTFA) (Mitochondrial transcription factor 1) (MtTF1)
(Transcription factor 6-like 2)
Length = 246
Score = 35.0 bits (79), Expect = 0.20
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 184 SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCK 226
S+Y RF KE++ KA+NPD E A+ W P ++ K
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKK 97
>ADHA_UROHA (P25405) Alcohol dehydrogenase I-A (EC 1.1.1.1) (ADH IA)
Length = 375
Score = 33.9 bits (76), Expect = 0.44
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 6 CPSSTINASFSL---------CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLF 56
C S+ ++A+ L C+ K LHH TS + +T + + ++ D + L
Sbjct: 111 CTSNDLSAATGLMPDGTSRFTCKGKSLHHFISTSSFTEYTVVHENSVVKIDAAAPL---- 166
Query: 57 DLPEQICYVQCGFCT 71
E++C + CGF T
Sbjct: 167 ---EKVCLIGCGFST 178
>ADH1_NAJNA (P80512) Alcohol dehydrogenase 1 (EC 1.1.1.1)
Length = 375
Score = 33.1 bits (74), Expect = 0.76
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 6 CPSSTINASFSL---------CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLF 56
C S+ +N+ L C+ K +HH TS + +T + + ++ D + L
Sbjct: 111 CTSNDLNSGSGLMPDGTSRFTCKGKSIHHFISTSTFTEYTVVHENSVVKIDPSAPL---- 166
Query: 57 DLPEQICYVQCGFCT 71
E++C + CGF T
Sbjct: 167 ---EKVCLIGCGFST 178
>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)
Length = 380
Score = 32.7 bits (73), Expect = 0.99
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Query: 173 NKPPEKRQRTP-SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNW 217
+K E R R P +A+ + K+E KRL +NPD+ + E K+W
Sbjct: 38 DKSSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>YC94_MYCPN (P75483) Hypothetical protein MPN294 (H10_orf206)
Length = 206
Score = 32.3 bits (72), Expect = 1.3
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 83 LSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVIDYLTLTNSMFIYFSCSKEDA 142
L M + VRC + S + N A+F+P + T L ID L F+Y K
Sbjct: 61 LEMGIHVRCDNTLSKTNFNQYTAAFIPH---GNTTRLVEIDKLRKDLEKFVY--KPKGPM 115
Query: 143 NMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEI 194
F+S +GA ++ +E DLI V EK N FIK+ +
Sbjct: 116 RWLFSSGNGACVL-----KEFDLIAPDQLVTVQNEKEMVKLLGKN-FIKQPV 161
>SOX7_HUMAN (Q9BT81) Transcription factor SOX-7
Length = 388
Score = 32.3 bits (72), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Query: 173 NKPPEKRQRTP-SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNW 217
+K E R R P +A+ + K+E KRL +NPD+ + E K+W
Sbjct: 38 DKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1
Length = 271
Score = 32.3 bits (72), Expect = 1.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 168 MSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWAN 219
M+ KP + + S+Y F+ ++ + LKA+NP M + T K W++
Sbjct: 107 MTEKPKKPADYPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSD 158
>TFAM_RAT (Q91ZW1) Transcription factor A, mitochondrial precursor
(mtTFA)
Length = 244
Score = 31.2 bits (69), Expect = 2.9
Identities = 17/59 (28%), Positives = 26/59 (43%), Gaps = 7/59 (11%)
Query: 168 MSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCK 226
+ N+ KP S+Y RF E++ + KA++PD E A W P + K
Sbjct: 45 LGNYPKKPM-------SSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKK 96
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2
Length = 892
Score = 31.2 bits (69), Expect = 2.9
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 178 KRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGVLHPCI 237
+R+ + R ++EE +R E+ +EA AA+N +P + E H
Sbjct: 175 RREAEAAELKRSVEEETRRKVEEDAKRVAEEARKMAAENEGKWPEPVAEQTESADYHVTT 234
Query: 238 TSMCGTFRSMKKDKVSEEERS-----QGTLSWKGHRLSE 271
+ KV + RS + T KG++LSE
Sbjct: 235 SQHARAAEDENDAKVEGDRRSRTRGGKATKQKKGNKLSE 273
>SX17_MOUSE (Q61473) Transcription factor SOX-17
Length = 419
Score = 30.8 bits (68), Expect = 3.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 177 EKRQRTP-SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNW 217
E R R P +A+ + K+E KRL +NPD+ + E K+W
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSW 106
>SX17_HUMAN (Q9H6I2) Transcription factor SOX-17
Length = 414
Score = 30.8 bits (68), Expect = 3.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 177 EKRQRTP-SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNW 217
E R R P +A+ + K+E KRL +NPD+ + E K+W
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSW 106
>SPEN_DROME (Q8SX83) Split ends protein
Length = 5560
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/83 (25%), Positives = 30/83 (35%), Gaps = 2/83 (2%)
Query: 152 ASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFS 211
AS +T DC+ M P TPS + KE ++L +P HK S
Sbjct: 2094 ASSLTAIDCQHNKENAMDTIAQGTPGASPSTPS--DNTPKERSRKLSRNSPVRLHKRRLS 2151
Query: 212 TAAKNWANFPPTQCKGDEEGVLH 234
+ N + C G + H
Sbjct: 2152 SQESNHSAGGGGSCGGSSHQIHH 2174
>CG23_SCHPO (P10815) G2/mitotic-specific cyclin cdc13
Length = 482
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/85 (24%), Positives = 41/85 (47%), Gaps = 3/85 (3%)
Query: 149 HSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKE 208
H+ AS+ T EE+ +IP ++ ++P K++R PS +N + + L ++ ++
Sbjct: 85 HTTASVSTRRALEEKSIIPATD--DEPASKKRRQPSVFNSSVPSLPQHLSTKSHSVS-TH 141
Query: 209 AFSTAAKNWANFPPTQCKGDEEGVL 233
K+ A P K +E V+
Sbjct: 142 GVDAFHKDQATIPKKLKKDVDERVV 166
>ADH_PAPHA (P14139) Alcohol dehydrogenase (EC 1.1.1.1) (ADH)
Length = 374
Score = 30.4 bits (67), Expect = 4.9
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 7/54 (12%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT 71
C+ K +HH TS S +T + + D S L E++C + CGF T
Sbjct: 132 CRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPL-------EKVCLIGCGFST 178
>ADHB_HUMAN (P00325) Alcohol dehydrogenase beta chain (EC 1.1.1.1)
Length = 374
Score = 30.4 bits (67), Expect = 4.9
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 7/54 (12%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT 71
C+ K +HH TS S +T + + D S L E++C + CGF T
Sbjct: 132 CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPL-------EKVCLIGCGFST 178
>ADHA_PERMA (P41680) Alcohol dehydrogenase A chain (EC 1.1.1.1)
Length = 374
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT------ 71
C+ K +H+ TS S +T + D S L E++C + CGF T
Sbjct: 132 CRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPL-------EKVCLIGCGFSTGYGSAV 184
Query: 72 ---------TILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVI 122
T + + LS+++ + +++V++ K F L + + +
Sbjct: 185 KVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPL 244
Query: 123 DY 124
DY
Sbjct: 245 DY 246
>ADH3_COTJA (P19631) Alcohol dehydrogenase alpha chain (EC 1.1.1.1)
(ADH3)
Length = 375
Score = 30.4 bits (67), Expect = 4.9
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 7/54 (12%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT 71
C+ K +HH TS + +T + + D+ + L E++C + CGF T
Sbjct: 133 CKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPL-------EKVCLIGCGFST 179
>ADH1_STRCA (P80338) Alcohol dehydrogenase I (EC 1.1.1.1)
Length = 374
Score = 30.4 bits (67), Expect = 4.9
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 7/54 (12%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT 71
C+ K +HH + TS + +T + + D + L E++C + CGF T
Sbjct: 132 CKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPL-------EKVCLIGCGFST 178
>ADH1_CHICK (P23991) Alcohol dehydrogenase I (EC 1.1.1.1)
Length = 375
Score = 30.4 bits (67), Expect = 4.9
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 7/54 (12%)
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCT 71
C+ K +HH TS + +T + + D+ + L E++C + CGF T
Sbjct: 133 CKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPL-------EKVCLIGCGFST 179
>TFAM_MOUSE (P40630) Transcription factor A, mitochondrial precursor
(mtTFA) (Testis-specific high mobility group protein)
(TS-HMG)
Length = 243
Score = 30.0 bits (66), Expect = 6.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 184 SAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCK 226
S+Y RF E++ + KA++PD E A W P + K
Sbjct: 54 SSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKK 96
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,734,428
Number of Sequences: 164201
Number of extensions: 1240887
Number of successful extensions: 3297
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3285
Number of HSP's gapped (non-prelim): 30
length of query: 276
length of database: 59,974,054
effective HSP length: 109
effective length of query: 167
effective length of database: 42,076,145
effective search space: 7026716215
effective search space used: 7026716215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0008.9