BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.11
(265 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VGLD_HHV11 (Q69091) Glycoprotein D precursor 34 0.42
PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.99.... 33 0.55
VGLD_HHV1P (P57083) Glycoprotein D precursor 32 1.2
VGLD_HHV1H (P06476) Glycoprotein D precursor 32 1.2
NU5M_CHLRE (P08739) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 32 1.6
GLUP_HELPY (O25788) Putative glucose/galactose transporter 31 2.7
CAO1_CANTR (P08790) Acyl-coenzyme A oxidase I (EC 1.3.3.6) (Acyl... 31 2.7
VGLD_HHV1A (P36318) Glycoprotein D precursor 31 3.5
NU6M_DUGDU (Q8W9M5) NADH-ubiquinone oxidoreductase chain 6 (EC 1... 30 4.6
GLUP_HELPJ (Q9ZK41) Putative glucose/galactose transporter 30 4.6
ZP10_ARATH (Q8W245) Probable zinc transporter 10 precursor (ZRT/... 30 6.0
ZIP8_ARATH (Q8S3W4) Probable zinc transporter 8 precursor (ZRT/I... 30 6.0
YN45_YEAST (P48558) Hypothetical 33.6 kDa protein in MCK1-RPS19B... 30 7.9
S6A2_BOVIN (P51143) Sodium-dependent noradrenaline transporter (... 30 7.9
PSL2_HUMAN (Q8TCT8) Signal peptide peptidase-like 2A (EC 3.4.99.... 30 7.9
IRT1_ARATH (Q38856) Fe(II) transport protein 1 precursor (Iron-r... 30 7.9
>VGLD_HHV11 (Q69091) Glycoprotein D precursor
Length = 394
Score = 33.9 bits (76), Expect = 0.42
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 143 SACLNTERGTYVAPTIDGDTDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVV 202
SA L GT VAP I + IP + + Y P T N G I + + A+V
Sbjct: 301 SALLEDPVGT-VAPQIPPNWHIPSIQDAATPYHPPATPNNMGL---IAGAVGGSLLAALV 356
Query: 203 LTDLVFWLVLYPFLAPKDFRL 223
+ +V+W+ + APK RL
Sbjct: 357 ICGIVYWMRRHTQKAPKRIRL 377
>PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.99.-)
(SPP-like 2A protein) (SPPL2a protein) (Intramembrane
protease 3) (IMP3) (Presenilin-like protein 2)
Length = 523
Score = 33.5 bits (75), Expect = 0.55
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 11 WLNWRFSICALWII--FTMGLGSFLIWKYEEFNKSRDERGERQQQRAGLLYEDELWNTCL 68
W N+ +++ +++I FT+ LG + E N E E ++ R
Sbjct: 168 WPNFDYTLVVIFVIAVFTVALGGYWSGLIELENMKSVEDAEDRETRK------------- 214
Query: 69 KRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYG 128
K+ + +V F+V+ ++I +LYF+ +W ++ F +AS S+Y
Sbjct: 215 KKDDYLTFSPLTVVVFVVICCIMIV--------LLYFFYRWLVYVMIAIFCIASSMSLYN 266
Query: 129 C 129
C
Sbjct: 267 C 267
>VGLD_HHV1P (P57083) Glycoprotein D precursor
Length = 394
Score = 32.3 bits (72), Expect = 1.2
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 143 SACLNTERGTYVAPTIDGDTDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVV 202
SA L GT VAP I + IP + + Y P T N G I + + A+V
Sbjct: 301 SALLEDPVGT-VAPQIPPNWHIPSIQDAATPYHPPATPNNMGL---IAGAVGGSLLAALV 356
Query: 203 LTDLVFWLVLYPFLAPKDFRL 223
+ +V+W+ APK RL
Sbjct: 357 ICGIVYWMHRRTRKAPKRIRL 377
>VGLD_HHV1H (P06476) Glycoprotein D precursor
Length = 393
Score = 32.3 bits (72), Expect = 1.2
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 143 SACLNTERGTYVAPTIDGDTDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVV 202
SA L GT VAP I + IP + + Y P T N G I + + A+V
Sbjct: 300 SALLEDPVGT-VAPQIPPNWHIPSIQDAATPYHPPATPNNMGL---IAGAVGGSLLAALV 355
Query: 203 LTDLVFWLVLYPFLAPKDFRL 223
+ +V+W+ APK RL
Sbjct: 356 ICGIVYWMRRRTRKAPKRIRL 376
>NU5M_CHLRE (P08739) NADH-ubiquinone oxidoreductase chain 5 (EC
1.6.5.3)
Length = 546
Score = 32.0 bits (71), Expect = 1.6
Identities = 28/122 (22%), Positives = 45/122 (35%), Gaps = 3/122 (2%)
Query: 88 LGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYGCFFKHDKFEGNTVGSACLN 147
LG +++A G ++ F + ++ G A ++G +F F + L
Sbjct: 24 LGHRGSSIIAIGCMVVAFISSVVIYYEVVFMGCAVSVDVFGTWFSVGTFHAGWTFNFDLL 83
Query: 148 TERGTYVAPTIDGDTDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVVLTDLV 207
T + T+ G + HMY Q+PH G Y M A +L LV
Sbjct: 84 TANMLF---TVTGVSMAVHMYACDYMRQDPHLNLFLGYLSYFTGFMCVLVAADNLLVMLV 140
Query: 208 FW 209
W
Sbjct: 141 GW 142
>GLUP_HELPY (O25788) Putative glucose/galactose transporter
Length = 407
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 1 METDTTALSYWLNWRFSICALWIIFTMG----LGSFLIWKYEEFNK--SRDERGERQQQR 54
M +TT S + + F AL I F +G +GSFL+ +E+ S+
Sbjct: 210 MPKETTQKSLFSHKHFVFGALGIFFYVGGEVAIGSFLVLSFEKLLNLDSQSSAHYLVYYW 269
Query: 55 AGLLYEDELWNTCLKRIHPVWLLAYRIVSFIVL--LGLLIGNMVA 97
G + L + + +I P LA+ +S IVL L ++IG +A
Sbjct: 270 GGAMVGRFLGSVLMNKIAPNKYLAFNALSSIVLIALAIIIGGKIA 314
>CAO1_CANTR (P08790) Acyl-coenzyme A oxidase I (EC 1.3.3.6)
(Acyl-CoA oxidase) (PXP-5)
Length = 661
Score = 31.2 bits (69), Expect = 2.7
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 40 FNKSRDERGE---RQQQRAGLLYEDELWNTCLKRIHPVWLLAYRIVSFI-VLLGLLIGNM 95
+N ++D++ E ++ R +E E + +R+ + + ++ + I V LGL + +
Sbjct: 52 YNLTKDQQREVTAKKIARLSRYFEHEYPDQQAQRLSILGVFDPQVFTRIGVNLGLFVSCV 111
Query: 96 VADGVGILYFYTQWTFTLVTIYFGLASFFSIYGCFFKHDKFEGNTVGSACLNTERGTYVA 155
+G +FY WT I G+ IYGCF + G+ V +G
Sbjct: 112 RGNGTNSQFFY--WT-----INKGIDKLRGIYGCFGMTELAHGSNV--------QGIETT 156
Query: 156 PTIDGDTD 163
T D DTD
Sbjct: 157 ATFDEDTD 164
>VGLD_HHV1A (P36318) Glycoprotein D precursor
Length = 394
Score = 30.8 bits (68), Expect = 3.5
Identities = 25/81 (30%), Positives = 35/81 (42%), Gaps = 4/81 (4%)
Query: 143 SACLNTERGTYVAPTIDGDTDIPHMYKSTDAYQEPHTQNTAGAWGYIFQIMFQTCAGAVV 202
SA L GT VAP I + IP + + Y P T N G I + + A+V
Sbjct: 301 SALLEDPVGT-VAPQIPPNWHIPSIQDAATPYHPPATPNNMGL---IAGAVGGSLLAALV 356
Query: 203 LTDLVFWLVLYPFLAPKDFRL 223
+ +V+W+ PK RL
Sbjct: 357 ICGIVYWMRRRTQKGPKRIRL 377
>NU6M_DUGDU (Q8W9M5) NADH-ubiquinone oxidoreductase chain 6 (EC
1.6.5.3)
Length = 175
Score = 30.4 bits (67), Expect = 4.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 83 SFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYG 128
S IV+LG L+G ++ +G ++Y ++ LV + G + ++G
Sbjct: 84 SNIVVLGALVGGLLMEGAAVVYLFSGGGLELVGLDLGSLENWMVFG 129
>GLUP_HELPJ (Q9ZK41) Putative glucose/galactose transporter
Length = 407
Score = 30.4 bits (67), Expect = 4.6
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 1 METDTTALSYWLNWRFSICALWIIFTMG----LGSFLIWKYEEFNKSRDERGERQ--QQR 54
M +TT S + + F AL I F +G +GSFL+ +E+ +
Sbjct: 210 MPKETTQKSLFSHKHFVFGALGIFFYVGGEVAIGSFLVLSFEKLLNLDAQSSAHYLVYYW 269
Query: 55 AGLLYEDELWNTCLKRIHPVWLLAYRIVSFIVL--LGLLIGNMVA 97
G + L + + +I P LA+ +S I+L L +LIG +A
Sbjct: 270 GGAMVGRFLGSALMNKIAPNKYLAFNALSSIILIALAILIGGKIA 314
>ZP10_ARATH (Q8W245) Probable zinc transporter 10 precursor
(ZRT/IRT-like protein 10)
Length = 364
Score = 30.0 bits (66), Expect = 6.0
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 76 LLAYRIVSFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYGCFFKHDK 135
LL YRI++ ++ LG+++ ++V +G+ T T T+ + L CF H
Sbjct: 205 LLRYRILAIVLELGIVVQSIV---IGLSVGDTNNTCTIKGLVAAL--------CF--HQM 251
Query: 136 FEGNTVGSACLNTERG 151
FEG +G L E G
Sbjct: 252 FEGMGLGGCILQAEYG 267
>ZIP8_ARATH (Q8S3W4) Probable zinc transporter 8 precursor
(ZRT/IRT-like protein 8)
Length = 347
Score = 30.0 bits (66), Expect = 6.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 65 NTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFF 124
+TC K+ LL YR+++ ++ LG+++ ++V +G+ T T T+ + L
Sbjct: 182 STCSKQ-----LLRYRVIATVLELGIIVHSVV---IGLSLGATNDTCTIKGLIAAL---- 229
Query: 125 SIYGCFFKHDKFEGNTVGSACLNTE 149
CF H FEG +G L E
Sbjct: 230 ----CF--HQMFEGMGLGGCILQAE 248
>YN45_YEAST (P48558) Hypothetical 33.6 kDa protein in MCK1-RPS19B
intergenic region
Length = 297
Score = 29.6 bits (65), Expect = 7.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
Query: 6 TALSYWLNWRFSICALWIIFTMGLGSFL 33
T++ YWLNW LWI+ MGL + L
Sbjct: 204 TSIYYWLNW-----GLWIMIGMGLTALL 226
>S6A2_BOVIN (P51143) Sodium-dependent noradrenaline transporter
(Norepinephrine transporter) (NET)
Length = 615
Score = 29.6 bits (65), Expect = 7.9
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 63 LWNTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGV--GI-----LYFY-----TQWT 110
LW VW+ A + ++VL LL+ + G GI + FY T W
Sbjct: 250 LWKGVKTSGKVVWITA--TLPYLVLFVLLVHGITLPGASNGINAYLHIDFYRLKEATVWI 307
Query: 111 FTLVTIYFGLASFFSIYGCFFKHDKFEGNTVGSACLNT 148
I+F L + F + F ++KF+ N A L +
Sbjct: 308 DAATQIFFSLGAGFGVLIAFASYNKFDNNCYRDALLTS 345
>PSL2_HUMAN (Q8TCT8) Signal peptide peptidase-like 2A (EC 3.4.99.-)
(SPP-like 2A protein) (SPPL2a protein) (Intramembrane
protease 3) (IMP3) (Presenilin-like protein 2)
Length = 520
Score = 29.6 bits (65), Expect = 7.9
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 11 WLNWRFSICALWII--FTMGLGSFLIWKYEEFNKSRDERGERQQQRAGLLYEDELWNTCL 68
W N+ +++ +++I FT+ LG + E N +R+ ++
Sbjct: 165 WPNFDYTMVVIFVIAVFTVALGGYWSGLVELENLKAVTTEDREMRK-------------- 210
Query: 69 KRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYG 128
K+ + +V F+V+ +++ +LYF+ +W ++ F +AS S+Y
Sbjct: 211 KKEEYLTFSPLTVVIFVVICCVMMV--------LLYFFYKWLVYVMIAIFCIASAMSLYN 262
Query: 129 C 129
C
Sbjct: 263 C 263
>IRT1_ARATH (Q38856) Fe(II) transport protein 1 precursor
(Iron-regulated transporter 1)
Length = 339
Score = 29.6 bits (65), Expect = 7.9
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 76 LLAYRIVSFIVLLGLLIGNMVADGVGILYFYTQWTFTLVTIYFGLASFFSIYGCFFKHDK 135
LL YR+++ ++ LG+++ ++V +G+ T T T+ + L CF H
Sbjct: 180 LLRYRVIAMVLELGIIVHSVV---IGLSLGATSDTCTIKGLIAAL--------CF--HQM 226
Query: 136 FEGNTVGSACLNTE 149
FEG +G L E
Sbjct: 227 FEGMGLGGCILQAE 240
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.328 0.143 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,016,546
Number of Sequences: 164201
Number of extensions: 1379418
Number of successful extensions: 3652
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3650
Number of HSP's gapped (non-prelim): 17
length of query: 265
length of database: 59,974,054
effective HSP length: 108
effective length of query: 157
effective length of database: 42,240,346
effective search space: 6631734322
effective search space used: 6631734322
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0008.11