BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.10
(155 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
R27A_LUPAL (P47905) 40S ribosomal protein S27a 163 2e-40
R27A_SOLTU (P62981) 40S ribosomal protein S27a 159 2e-39
R27A_LYCES (P62980) 40S ribosomal protein S27a 159 2e-39
27AB_ARATH (P59232) 40S ribosomal protein S27a-2 159 3e-39
27AC_ARATH (P59233) 40S ribosomal protein S27a-3 157 9e-39
R27A_ASPOF (P31753) 40S ribosomal protein S27a 153 1e-37
R27A_MAIZE (P27923) 40S ribosomal protein S27a 150 8e-37
UBIQ_SOYBN (P03993) Ubiquitin 150 1e-36
UBIQ_ARATH (P59263) Ubiquitin 150 1e-36
R27A_HORVU (P22277) 40S ribosomal protein S27a 150 1e-36
UBIQ_COPCO (P19848) Ubiquitin 149 2e-36
UBIQ_CHLRE (P14624) Ubiquitin 149 3e-36
UBIQ_YEAST (P61864) Ubiquitin 148 5e-36
UBIQ_CRYNE (P61863) Ubiquitin 148 5e-36
UBIQ_CANAL (P61862) Ubiquitin 148 5e-36
UBIQ_NEUCR (P13117) Ubiquitin 147 9e-36
UBIQ_ACECL (P42739) Ubiquitin 147 9e-36
UBIQ_TRYCR (P08565) Ubiquitin 147 1e-35
UBIQ_ACACA (P49634) Ubiquitin 147 1e-35
UBIQ_GEOCY (P59669) Ubiquitin 146 2e-35
>R27A_LUPAL (P47905) 40S ribosomal protein S27a
Length = 79
Score = 163 bits (412), Expect = 2e-40
Identities = 75/79 (94%), Positives = 76/79 (95%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHF
Sbjct: 1 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHF 60
Query: 137 DRHYCGKCGLTYVYQKAAA 155
DRHYCGKCG TYVYQKA A
Sbjct: 61 DRHYCGKCGKTYVYQKADA 79
>R27A_SOLTU (P62981) 40S ribosomal protein S27a
Length = 80
Score = 159 bits (403), Expect = 2e-39
Identities = 73/77 (94%), Positives = 75/77 (96%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHF
Sbjct: 1 AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHF 60
Query: 137 DRHYCGKCGLTYVYQKA 153
DRHYCGKCGLTYVY KA
Sbjct: 61 DRHYCGKCGLTYVYNKA 77
>R27A_LYCES (P62980) 40S ribosomal protein S27a
Length = 80
Score = 159 bits (403), Expect = 2e-39
Identities = 73/77 (94%), Positives = 75/77 (96%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHF
Sbjct: 1 AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHF 60
Query: 137 DRHYCGKCGLTYVYQKA 153
DRHYCGKCGLTYVY KA
Sbjct: 61 DRHYCGKCGLTYVYNKA 77
>27AB_ARATH (P59232) 40S ribosomal protein S27a-2
Length = 81
Score = 159 bits (401), Expect = 3e-39
Identities = 73/79 (92%), Positives = 75/79 (94%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HF
Sbjct: 1 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHF 60
Query: 137 DRHYCGKCGLTYVYQKAAA 155
DRHYCGKCGLTYVYQK A
Sbjct: 61 DRHYCGKCGLTYVYQKEGA 79
>27AC_ARATH (P59233) 40S ribosomal protein S27a-3
Length = 81
Score = 157 bits (397), Expect = 9e-39
Identities = 71/76 (93%), Positives = 74/76 (96%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HF
Sbjct: 1 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHF 60
Query: 137 DRHYCGKCGLTYVYQK 152
DRHYCGKCGLTYVYQK
Sbjct: 61 DRHYCGKCGLTYVYQK 76
>R27A_ASPOF (P31753) 40S ribosomal protein S27a
Length = 78
Score = 153 bits (387), Expect = 1e-37
Identities = 71/76 (93%), Positives = 73/76 (95%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHF 136
AKKRKKKTYTKPKKIKHK +KVKLAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH
Sbjct: 1 AKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHK 60
Query: 137 DRHYCGKCGLTYVYQK 152
DRHYCGKCGLTYVYQK
Sbjct: 61 DRHYCGKCGLTYVYQK 76
>R27A_MAIZE (P27923) 40S ribosomal protein S27a
Length = 79
Score = 150 bits (380), Expect = 8e-37
Identities = 70/79 (88%), Positives = 73/79 (91%), Gaps = 1/79 (1%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANH 135
AKKRKKKTYTKPKKIKHKH+KVKLAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANH
Sbjct: 1 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANH 60
Query: 136 FDRHYCGKCGLTYVYQKAA 154
FDRHYCGKCGLTYVY + A
Sbjct: 61 FDRHYCGKCGLTYVYNQKA 79
>UBIQ_SOYBN (P03993) Ubiquitin
Length = 76
Score = 150 bits (379), Expect = 1e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_ARATH (P59263) Ubiquitin
Length = 76
Score = 150 bits (379), Expect = 1e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>R27A_HORVU (P22277) 40S ribosomal protein S27a
Length = 79
Score = 150 bits (379), Expect = 1e-36
Identities = 70/79 (88%), Positives = 74/79 (93%), Gaps = 1/79 (1%)
Query: 77 AKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANH 135
AKKRKKKTYTKPKK KHKH+KVKLAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANH
Sbjct: 1 AKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANH 60
Query: 136 FDRHYCGKCGLTYVYQKAA 154
FDRHYCGKCGLTYVY + A
Sbjct: 61 FDRHYCGKCGLTYVYNQKA 79
>UBIQ_COPCO (P19848) Ubiquitin
Length = 76
Score = 149 bits (376), Expect = 2e-36
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_CHLRE (P14624) Ubiquitin
Length = 76
Score = 149 bits (375), Expect = 3e-36
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_YEAST (P61864) Ubiquitin
Length = 76
Score = 148 bits (373), Expect = 5e-36
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_CRYNE (P61863) Ubiquitin
Length = 76
Score = 148 bits (373), Expect = 5e-36
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_CANAL (P61862) Ubiquitin
Length = 76
Score = 148 bits (373), Expect = 5e-36
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_NEUCR (P13117) Ubiquitin
Length = 76
Score = 147 bits (371), Expect = 9e-36
Identities = 74/76 (97%), Positives = 75/76 (98%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_ACECL (P42739) Ubiquitin
Length = 76
Score = 147 bits (371), Expect = 9e-36
Identities = 73/76 (96%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_TRYCR (P08565) Ubiquitin
Length = 76
Score = 147 bits (370), Expect = 1e-35
Identities = 74/76 (97%), Positives = 75/76 (98%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_ACACA (P49634) Ubiquitin
Length = 76
Score = 147 bits (370), Expect = 1e-35
Identities = 74/76 (97%), Positives = 75/76 (98%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>UBIQ_GEOCY (P59669) Ubiquitin
Length = 76
Score = 146 bits (369), Expect = 2e-35
Identities = 73/76 (96%), Positives = 76/76 (99%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,808,302
Number of Sequences: 164201
Number of extensions: 693126
Number of successful extensions: 2412
Number of sequences better than 10.0: 202
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2221
Number of HSP's gapped (non-prelim): 218
length of query: 155
length of database: 59,974,054
effective HSP length: 101
effective length of query: 54
effective length of database: 43,389,753
effective search space: 2343046662
effective search space used: 2343046662
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0008.10