BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0005.12
(526 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 42 0.003
ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 42 0.003
IF34_SCHPO (P78795) Probable eukaryotic translation initiation f... 42 0.005
ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 41 0.009
ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 41 0.009
ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 41 0.009
ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 41 0.009
RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 40 0.011
ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 40 0.015
ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 39 0.025
ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 39 0.025
ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 39 0.025
ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 39 0.025
ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 39 0.033
RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 39 0.033
ROD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (h... 39 0.043
YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i... 38 0.057
ROD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnR... 38 0.057
RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 38 0.057
RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 38 0.074
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1
(hnRNP A2 / hnRNP B1)
Length = 341
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Score = 30.8 bits (68), Expect = 9.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R+ + Q GKLT+ + R R FGFV +++ +V
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1
(hnRNP A2 / hnRNP B1)
Length = 353
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 30.8 bits (68), Expect = 9.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R+ + Q GKLT+ + R R FGFV +++ +V
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation
factor 3 RNA-binding subunit (eIF-3 RNA-binding subunit)
(eIF3 p33) (Translation initiation factor eIF3, p33
subunit)
Length = 282
Score = 41.6 bits (96), Expect = 0.005
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRK 126
L V ++D +RDLF + G + V+L + + GR F FV Y +R+ +K R R
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 127 QSY 129
Y
Sbjct: 264 DGY 266
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP)
Length = 319
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+RD F Q+GK+ + + R G+K F FV + + + V K
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Score = 35.0 bits (79), Expect = 0.48
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R F Q G LT+ + R N R FGFV YA E+V
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed)
Length = 319
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+RD F Q+GK+ + + R G+K F FV + + + V K
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Score = 35.0 bits (79), Expect = 0.48
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R F Q G LT+ + R N R FGFV YA E+V
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1)
Length = 371
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+RD F Q+GK+ + + R G+K F FV + + + V K
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Score = 35.0 bits (79), Expect = 0.48
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R F Q G LT+ + R N R FGFV YA E+V
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (Unwinding protein 1)
(UP1) (Fragment)
Length = 195
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+RD F Q+GK+ + + R G+K F FV + + + V K
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Score = 35.0 bits (79), Expect = 0.48
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R F Q G LT+ + R N R FGFV YA E+V
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3
homolog 2 (hnRNP A3(B))
Length = 385
Score = 40.4 bits (93), Expect = 0.011
Identities = 18/55 (32%), Positives = 30/55 (53%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + +H+RD F +GK+ + + R G+K F FV + + + V K
Sbjct: 120 IFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 174
Score = 35.4 bits (80), Expect = 0.37
Identities = 27/88 (30%), Positives = 41/88 (45%), Gaps = 4/88 (4%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV---MKGR 123
LF+ G++ +R+ F Q GKLT+ + R R FGFV Y+ E+V M R
Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88
Query: 124 SRKQSYVSMAPPTTV-KDSRAKERLHLS 150
K + P V ++ A+ HL+
Sbjct: 89 PHKVDGRVVEPKRAVSREDSARPGAHLT 116
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1)
Length = 319
Score = 40.0 bits (92), Expect = 0.015
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+RD F Q+GK+ + + R G+K F FV + + V K
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDK 160
Score = 33.9 bits (76), Expect = 1.1
Identities = 20/53 (37%), Positives = 26/53 (48%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV 119
LF+ G++ +R F Q G LT+ + R N R FGFV YA E V
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 67
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 342
Score = 39.3 bits (90), Expect = 0.025
Identities = 28/108 (25%), Positives = 46/108 (41%), Gaps = 14/108 (12%)
Query: 14 SPKSGGITSRQAAGGTFGDLSSVDDEGDDEGEQDGGDARVARVVAPPARTCFPLFVDGIA 73
S + GG S+++ GG G S G G G R L+V ++
Sbjct: 220 SERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNR--------------LYVGNLS 265
Query: 74 DSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
V+ + +LF + GK+ + R+ GR FGFV ++ ++V K
Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP
A3)
Length = 379
Score = 39.3 bits (90), Expect = 0.025
Identities = 22/85 (25%), Positives = 44/85 (50%), Gaps = 1/85 (1%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRK 126
+FV GI + +++RD F ++GK+ + + R G+K F FV + + + V K +K
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Query: 127 QSYVSMAPPTTVKDSRAKERLHLSG 151
++ VK + +K+ + +G
Sbjct: 188 YHTIN-GHNCEVKKALSKQEMQSAG 211
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3
(hnRNP A3)
Length = 379
Score = 39.3 bits (90), Expect = 0.025
Identities = 22/85 (25%), Positives = 44/85 (50%), Gaps = 1/85 (1%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRK 126
+FV GI + +++RD F ++GK+ + + R G+K F FV + + + V K +K
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Query: 127 QSYVSMAPPTTVKDSRAKERLHLSG 151
++ VK + +K+ + +G
Sbjct: 188 YHTIN-GHNCEVKKALSKQEMQSAG 211
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3
(hnRNP A3)
Length = 378
Score = 39.3 bits (90), Expect = 0.025
Identities = 22/85 (25%), Positives = 44/85 (50%), Gaps = 1/85 (1%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRK 126
+FV GI + +++RD F ++GK+ + + R G+K F FV + + + V K +K
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187
Query: 127 QSYVSMAPPTTVKDSRAKERLHLSG 151
++ VK + +K+ + +G
Sbjct: 188 YHTIN-GHNCEVKKALSKQEMQSAG 211
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1
homolog (hnRNP A1) (Helix-destabilizing protein)
(Single-strand binding protein) (hnRNP core protein A1)
Length = 365
Score = 38.9 bits (89), Expect = 0.033
Identities = 18/55 (32%), Positives = 30/55 (53%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + H+R+ F Q+GK+ + + R G+K F FV + + + V K
Sbjct: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDK 161
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2
homolog 2 (hnRNP A2(B))
Length = 358
Score = 38.9 bits (89), Expect = 0.033
Identities = 18/55 (32%), Positives = 31/55 (55%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+R+ F ++GK+ + + + G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDK 156
>ROD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0
(hnRNP D0) (AU-rich element RNA-binding protein 1)
Length = 355
Score = 38.5 bits (88), Expect = 0.043
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 17 SGGITSRQAAGGTFG-----DLSSVDDEGDDEGEQDGGDARVARVVAPPARTCFPLFVDG 71
SG AAGGT G + + +D ++E E + A R + +F+ G
Sbjct: 44 SGSGGGGSAAGGTEGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGG 103
Query: 72 IADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRKQSYVS 131
++ ++D F + G++ + L+ GR FGFV + E V K +K+ ++
Sbjct: 104 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN 163
Query: 132 --MAPPTTVKDSRAKE 145
+ P K + KE
Sbjct: 164 GKVIDPKRAKAMKTKE 179
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4
intergenic region
Length = 220
Score = 38.1 bits (87), Expect = 0.057
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 79 FHVRDL---FLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRKQSYVSM 132
FH ++L F Q G L V L R + G +GF+ + N+ED M + +Y+ M
Sbjct: 102 FHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLM 158
>ROD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP
D0) (AU-rich element RNA-binding protein 1)
Length = 353
Score = 38.1 bits (87), Expect = 0.057
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 2 EGRKIPPTSIFCSPKSGGITSRQAAGGTFG-----DLSSVDDEGDDEGEQDGGDARVARV 56
EG + + G AAGGT G + + +D ++E E +
Sbjct: 27 EGAMVAAAQGAAAAAGSGSGGGSAAGGTEGGSTEAEGAKIDASKNEEDEGHSNSSPRHTE 86
Query: 57 VAPPARTCFPLFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANR 116
A R + +F+ G++ ++D F + G + + L+ GR FGFV +
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 117 EDVMKGRSRKQSYVS--MAPPTTVKDSRAKE 145
E V K +K+ ++ + P K + KE
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE 177
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3
homolog 1 (hnRNP A3(A))
Length = 373
Score = 38.1 bits (87), Expect = 0.057
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+FV GI + +H+RD +GK+ + + R G+K F FV + + + V K
Sbjct: 120 IFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 174
Score = 35.8 bits (81), Expect = 0.28
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 27 GGTFGDLSSVDDEGDDEGEQDGGDARVARVVAPPARTCFPLFVDGIADSVNYFHVRDLFL 86
GG S DD+G D E + LF+ G++ +R+ F
Sbjct: 4 GGMDDHWPSSDDQGHDPKEPE---------------QLRKLFIGGLSFETTDDSLREHFE 48
Query: 87 QHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV---MKGRSRKQSYVSMAPPTTV-KDSR 142
Q GKLT+ + R R FGFV Y+ E+V M R K + P V ++
Sbjct: 49 QWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDS 108
Query: 143 AKERLHLS 150
A+ HL+
Sbjct: 109 ARPGAHLT 116
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2
homolog 1 (hnRNP A2(A))
Length = 346
Score = 37.7 bits (86), Expect = 0.074
Identities = 17/55 (30%), Positives = 31/55 (55%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+R+ F ++GK+ ++ + + G+K F FV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDK 156
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,161,754
Number of Sequences: 164201
Number of extensions: 3022578
Number of successful extensions: 10646
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 10298
Number of HSP's gapped (non-prelim): 360
length of query: 526
length of database: 59,974,054
effective HSP length: 115
effective length of query: 411
effective length of database: 41,090,939
effective search space: 16888375929
effective search space used: 16888375929
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0005.12