BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0005.1
(346 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
INVO_GALCR (P24710) Involucrin 35 0.36
BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B a... 34 0.47
YBY0_YEAST (P38272) Hypothetical 47.4 kDa protein in OPY1-AGP2 i... 33 1.1
SEC3_YEAST (P33332) Exocyst complex component SEC3 (PSL1 protein) 33 1.1
VMTH_LAMBD (P03736) Minor tail protein precursor H 33 1.4
TRL3_HUMAN (Q9HCF6) Long transient receptor potential channel 3 ... 33 1.4
LIPS_HUMAN (Q05469) Hormone sensitive lipase (EC 3.1.1.-) (HSL) 33 1.4
BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5 33 1.4
SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/S... 32 1.8
INVO_PONPY (P14708) Involucrin 32 1.8
YGG6_YEAST (P53165) Hypothetical 72.9 kDa protein in RPB9-ALG2 i... 32 2.4
SEC9_YEAST (P40357) Protein transport protein SEC9 32 2.4
RIBF_BUCAI (P57250) Riboflavin biosynthesis protein ribF [Includ... 32 2.4
RBP1_RAT (Q62796) RalA binding protein 1 (RalBP1) (Ral interacti... 32 2.4
PELC_ERWCH (P11073) Pectate lyase C precursor (EC 4.2.2.2) 32 2.4
FXP2_MOUSE (P58463) Forkhead box protein P2 32 2.4
FXP2_HUMAN (O15409) Forkhead box protein P2 (CAG repeat protein ... 32 2.4
AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment) 32 2.4
LUG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG 32 3.1
LMN1_CAEEL (Q21443) Lamin 1 (CeLam-1) (Ce-lamin) 32 3.1
>INVO_GALCR (P24710) Involucrin
Length = 384
Score = 34.7 bits (78), Expect = 0.36
Identities = 36/130 (27%), Positives = 50/130 (37%), Gaps = 13/130 (10%)
Query: 79 QHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQ----QVAKQYG 134
Q Q L H G+ A + + Q+LPQ Q HL KQ Q+ + QEQ Q A+ G
Sbjct: 226 QEQRL--HLGEEQASPEQRLQLLPQGPQEQELHLGKQQQQQESQQHQEQHEEHQKAEDLG 283
Query: 135 NSE-----QGVNQLSIKEGPGKAVQRQTLCAQATEASGVSTND--MGFSSSALIKGSGNL 187
Q QL + GK + Q L +A + D G L++ G
Sbjct: 284 QQHRQEKAQREQQLEEQLDEGKKLLDQQLDQEAVKRHEQLQRDEQFGMKKEQLLEPPGQQ 343
Query: 188 NEVSHKPALI 197
KP +
Sbjct: 344 KGQLEKPVFV 353
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B
antigen)
Length = 1164
Score = 34.3 bits (77), Expect = 0.47
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 31/203 (15%)
Query: 110 DHLAKQTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQTLCAQATEASGVS 169
+H+ K+TS N Q+V + Y NS Q + Q S++E + + T QAT+
Sbjct: 267 EHVKKETSSEENT----QKVDEHYANSLQNLAQKSLEE-----LDKATTNEQATQVK--- 314
Query: 170 TNDMGFSSSALIKGSGNLNEVSHKPALISEKPSAAMQRLIGVFTSMSSEALGASIGKIRE 229
+ ++ + L E+ LI E + + + E K
Sbjct: 315 --------NQFLENAQKLKEIQ---PLIKETNVKLYKAMSESLEQVEKEL------KHNS 357
Query: 230 VVHLNDAIPAAKFIDEPLEMAGQQNQPSRIPQGRKMARNINAMAFDTSRSCARTHESFNQ 289
+L D + +K I E G+ NQ +P+ +++ ++ + ++ Q
Sbjct: 358 EANLEDLVAKSKEIVREYE--GKLNQSKNLPELKQLEEEAHSKLKQVVEDFRKKFKTSEQ 415
Query: 290 LTDVEEPDLDLVASKVKRSRIEV 312
+T + DL A++ + +IE+
Sbjct: 416 VTPKKRVKRDLAANENNQQKIEL 438
>YBY0_YEAST (P38272) Hypothetical 47.4 kDa protein in OPY1-AGP2
intergenic region
Length = 425
Score = 33.1 bits (74), Expect = 1.1
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 9 LNAIYQQICSKLRQHESSPHE-PKTFNVEKFRGHKRLYEDIFAMFRLRKSQITPEISERV 67
LN+I+++ KL++ E E +N +K + D + S I SE++
Sbjct: 98 LNSIFERKNKKLKELEKDYSELSNRYNEQKEK------MDQLSKLAKNSSAIEQSCSEKL 151
Query: 68 DRVETLINSIIQHQNL-SSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNM 122
+E NS+++ QNL H + + K +L L QN + TS +++
Sbjct: 152 QNMEVNYNSLLESQNLYRDHYSDEISKLNEKIGLLELELSNQNLNYGSDTSSNSDI 207
>SEC3_YEAST (P33332) Exocyst complex component SEC3 (PSL1 protein)
Length = 1336
Score = 33.1 bits (74), Expect = 1.1
Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 51 MFRLRKSQITPEISERVDRVETLINSIIQHQNLSSHQGKHSADVQSKQQVL----PQVLG 106
+ +++ Q E +ER+ + E + + ++ D +S Q + +L
Sbjct: 422 LLEIQRKQREQETAERLKKEE---QEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLLE 478
Query: 107 TQNDHLAKQT----SQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQTLCAQA 162
N LA++T + +N + E+ A+ + ++ +N ++ G + + +
Sbjct: 479 DLNAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSI--SLS 536
Query: 163 TEASGVST-----------NDMGFSSSALIKGSGNLN----EVSHKPALISEKPSAAMQR 207
E +G++T ND+ F ++ S N V H+ ++I E+ A Q+
Sbjct: 537 DEIAGLNTSNLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEVSIIQEEAPAVSQK 596
Query: 208 LIGVFTSMSSEALGASIGKIREVVHLNDAI 237
LI + SEAL S +I+ + +++D +
Sbjct: 597 LILPEENNESEALIESKEEIKTMENIDDEV 626
>VMTH_LAMBD (P03736) Minor tail protein precursor H
Length = 853
Score = 32.7 bits (73), Expect = 1.4
Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 22/200 (11%)
Query: 150 GKAVQRQTLCAQATEASGVSTNDMGFSSSALIK----GSGNLNEVSHKPALISEKPSAAM 205
G R + ++A +A+G++ N S SAL+K G + +S A S +
Sbjct: 161 GLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARFSSASGVEV 220
Query: 206 QRLIGVF-----------TSMSSEALGASIGKIREVVHLNDAIPAAKFIDEPLEMAGQQN 254
++ F T+M+ + S +I V L + A L+ A +
Sbjct: 221 DKVAEAFGKLTTDPTSGLTAMARQFHNVSAEQIAYVAQLQRSGDEA----GALQAANEAA 276
Query: 255 QPSRIPQGRKMARNINAMAFDTSRSCARTHESFNQLTDVEEPDLD---LVASKVKRSRIE 311
Q R++ N+ + R+ ++ + D+ PD L+ ++ + +
Sbjct: 277 TKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAEAAYKKAD 336
Query: 312 VIYLLSVFFFFMNAIYKTRY 331
I+ L +F+N + RY
Sbjct: 337 DIWNLRKDDYFVNDEARARY 356
>TRL3_HUMAN (Q9HCF6) Long transient receptor potential channel 3
(LTrpC3) (Fragment)
Length = 1017
Score = 32.7 bits (73), Expect = 1.4
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 25/165 (15%)
Query: 6 FARLNAIYQQICSKLRQHESSPHEPKTFNVEKF-------RGHKRLYEDIFAMFRLRKSQ 58
F+ + I+Q +C + R+HES P E + + ++ F + H + I FR + +
Sbjct: 461 FSHMTMIFQHLCCRWRKHESDPDE-RDYGLKLFITDDELKKVHDFEEQCIEEYFREKDDR 519
Query: 59 ITPEISERV----DRVETLINSIIQHQNLSSHQGKHS---ADVQSKQ---------QVLP 102
ER+ +RVE + + ++ N H K S D++ Q L
Sbjct: 520 FNSSNDERIRVTSERVENM-SMRLEEVNEREHSMKASLQTVDIRLAQLEDLIGRMATALE 578
Query: 103 QVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKE 147
++ G + K S+ ++ C + +Q + Q N ++E
Sbjct: 579 RLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNTFKLQE 623
>LIPS_HUMAN (Q05469) Hormone sensitive lipase (EC 3.1.1.-) (HSL)
Length = 775
Score = 32.7 bits (73), Expect = 1.4
Identities = 40/155 (25%), Positives = 60/155 (37%), Gaps = 16/155 (10%)
Query: 198 SEKPSAAMQRLIGVFTSMSSEALG--ASIGKIREVVHLNDAIPAAKFID-EPLEMAGQQN 254
S+ P QRL GVF + +ALG ++G++ V HL D P L +
Sbjct: 23 SQGPGETAQRLSGVFAGVREQALGLEPALGRLLGVAHLFDLDPETPANGYRSLVHTARCC 82
Query: 255 QPSRIPQGRKMARNINAMAFDTSRSCARTHESFNQLTDVEEPDLDLVASKVKRSRIEVIY 314
+ + R +A N ++ F TS + A LT L A R+ V
Sbjct: 83 LAHLLHKSRYVASNRRSIFFRTSHNLAELEAYLAALT-------QLRALVYYAQRLLVTN 135
Query: 315 LLSVFFF----FMNAIYKTRYTIFYPVKSCYFLRC 345
V FF + A + Y + K C++ RC
Sbjct: 136 RPGVLFFEGDEGLTADFLREYVTLH--KGCFYGRC 168
>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5
Length = 727
Score = 32.7 bits (73), Expect = 1.4
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 82 NLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQGVN 141
NLS+ S+ S + L Q +Q Q + Q+QQ +Q GNS G
Sbjct: 507 NLSTFAANGSSSGGSNGGLSMTALLPQQQQQQQQQHQMSQQQQQQQQQQQQQGNSSSGQQ 566
Query: 142 Q--------LSIKEGPGKAVQRQTLCAQATEASGVSTNDMGFSSSALIKGSGNLN 188
Q + K Q+Q A A+ S + G ++S+L + LN
Sbjct: 567 QQPNGILACSTPKANTPTTTQQQMYAAVMAAAASASASTSGSANSSLNNSNSTLN 621
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF
complex component SNF5) (Transcription factor TYE4)
Length = 905
Score = 32.3 bits (72), Expect = 1.8
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 11 AIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAMFRLRKSQITPEISERVDRV 70
A QQ+ +KLRQ + + P+ N + + +K Q T + ++++
Sbjct: 134 ATQQQVLNKLRQQAIAKNNPQVVNAITVA-----QQQVQRQIEQQKGQQTAQT--QLEQQ 186
Query: 71 ETLINSIIQHQNLSSH-------QGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMC 123
L+ Q Q L + Q +H +Q +QQ Q Q H +Q Q+
Sbjct: 187 RQLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQ---QQQQHQQQQQQQQQQQQ 243
Query: 124 LQEQQVAKQYGNSEQGVNQ 142
Q+QQ +Q +Q Q
Sbjct: 244 QQQQQQQQQQQQQQQQQQQ 262
>INVO_PONPY (P14708) Involucrin
Length = 835
Score = 32.3 bits (72), Expect = 1.8
Identities = 32/155 (20%), Positives = 67/155 (42%), Gaps = 15/155 (9%)
Query: 2 KDTHFARLNAIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAMFRLRKSQITP 61
++ H + + +Q C + +Q E E + + E+ H++ E+ + K+Q
Sbjct: 60 EEKHMTAVKGLPEQECEQ-QQQEPQEQELQQQHWEQHEEHQKA-ENPEQQLKQEKAQRDQ 117
Query: 62 EISERVDRVETLINSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNN 121
+++E+++ + L++ Q L K + K++ L ++ Q HL Q
Sbjct: 118 QLNEQLEEEKKLLD-----QRLDQELVKRDEQLGMKKEQLLELPEQQEQHLKHLEQQEGQ 172
Query: 122 MCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQ 156
+ L EQQ E + L +EG K +++Q
Sbjct: 173 LELPEQQ--------EGQLKHLEQQEGQLKHLEQQ 199
>YGG6_YEAST (P53165) Hypothetical 72.9 kDa protein in RPB9-ALG2
intergenic region
Length = 657
Score = 32.0 bits (71), Expect = 2.4
Identities = 42/192 (21%), Positives = 73/192 (37%), Gaps = 20/192 (10%)
Query: 54 LRKSQITPEISERVDRVETLINSII--QHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDH 111
L + P+ +R+ + L ++ Q Q Q HS Q++ G +H
Sbjct: 440 LTNQNLNPKQIQRLQQQRALQAQLLSQQQQQQQQQQQHHSPQAQAQASTQQPTQGMVPNH 499
Query: 112 L---AKQTSQRNNMC---LQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQ--------- 156
A +S N+ +Q+QQ +Q+ + + G+ L I+ K Q+Q
Sbjct: 500 FPGGATNSSFNANVSSKQIQQQQQQQQHKSQDTGLTPLEIQSQQQKLRQQQLQQQKFEAA 559
Query: 157 -TLCAQATEASGVSTNDMGFSSSALIKGS--GNLNEVSHKPALISEKPSAAMQRLIGVFT 213
+ A AT+ S D S + S GN N ++ K ++ S S +
Sbjct: 560 ASYLANATKLMQESNQDSHLSGTHNNNSSKNGNNNLMTMKASISSPNTSVNSIQSPPSVN 619
Query: 214 SMSSEALGASIG 225
S++ G S G
Sbjct: 620 SVNGSGQGVSTG 631
>SEC9_YEAST (P40357) Protein transport protein SEC9
Length = 651
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 76 SIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGN 135
S + H + Q + D Q +QQ Q N+ Q + +Q+++ A+Q
Sbjct: 365 SEVDHSSRQQQQQQWFMDEQQQQQ---QHFNATNNQYGDQRGYKTFEEIQKEEEARQQQE 421
Query: 136 SEQGVNQLS-----IKEGPGKAVQRQTLCAQATEASGVSTNDM-GFSSSALIKGSGNLNE 189
++ V+++ K+ + + AQ E +G++T M G S L GNL+
Sbjct: 422 EDEAVDEIKQEIKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDL 481
Query: 190 VSHKPALISEK 200
+ + + EK
Sbjct: 482 MKVQNKVADEK 492
>RIBF_BUCAI (P57250) Riboflavin biosynthesis protein ribF [Includes:
Riboflavin kinase (EC 2.7.1.26) (Flavokinase); FMN
adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase)
(FAD synthetase)]
Length = 313
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 242 FIDEPLEMAGQQNQPSRIPQGRKMARNINAMAFDTSRSCARTHESFNQLT 291
F +PLE + N P RI + R+ R I++ FD S C + ++SF L+
Sbjct: 54 FEPQPLEFLRKNNAPVRITKFREKIRRISSYNFD-SILCVKFNKSFQSLS 102
>RBP1_RAT (Q62796) RalA binding protein 1 (RalBP1) (Ral interacting
protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione
ATPase) (DNP-SG ATPase)
Length = 646
Score = 32.0 bits (71), Expect = 2.4
Identities = 23/89 (25%), Positives = 44/89 (48%), Gaps = 7/89 (7%)
Query: 46 EDIFAMFRLRKSQITPEISERVDRVETLINSIIQHQNLSSHQGKHSADVQSKQ------Q 99
E++ AM + + QI E E +DR+ I I Q+ S ++S+D +S+ Q
Sbjct: 493 EELLAMEQFLRRQIASE-KEEIDRLRAEIAEIQSRQHGRSETEEYSSDSESESEDEEELQ 551
Query: 100 VLPQVLGTQNDHLAKQTSQRNNMCLQEQQ 128
++ + L QN+ L + + N +E++
Sbjct: 552 IILEDLQRQNEELEIKNNHLNQAVHEERE 580
>PELC_ERWCH (P11073) Pectate lyase C precursor (EC 4.2.2.2)
Length = 375
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 120 NNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQTLCAQATEASGVSTNDMGFSSSA 179
+++ +Q ++ G ++ G + + + + P V L A E G ND F S+
Sbjct: 133 SDVVVQNMRIGYLPGGAKDG-DMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAV 191
Query: 180 LIKGSGNLNEVSH 192
IKG+ N VS+
Sbjct: 192 DIKGASNTVTVSY 204
>FXP2_MOUSE (P58463) Forkhead box protein P2
Length = 714
Score = 32.0 bits (71), Expect = 2.4
Identities = 23/102 (22%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Query: 59 ITPEISERVDRVETL----INSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAK 114
ITP+ +++ + + L + +++Q Q Q + + KQQ + Q +
Sbjct: 99 ITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQQQ 158
Query: 115 QTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQ 156
Q Q+ Q+QQ +Q +Q Q ++ PGK + Q
Sbjct: 159 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQ 200
>FXP2_HUMAN (O15409) Forkhead box protein P2 (CAG repeat protein 44)
(Trinucleotide repeat-containing gene 10 protein)
Length = 715
Score = 32.0 bits (71), Expect = 2.4
Identities = 23/102 (22%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Query: 59 ITPEISERVDRVETL----INSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAK 114
ITP+ +++ + + L + +++Q Q Q + + KQQ + Q +
Sbjct: 99 ITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQQQ 158
Query: 115 QTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQRQ 156
Q Q+ Q+QQ +Q +Q Q ++ PGK + Q
Sbjct: 159 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQ 200
>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)
Length = 437
Score = 32.0 bits (71), Expect = 2.4
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 81 QNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQGV 140
Q+L Q + Q +QQ Q TQ L Q Q++N +Q+Q A Q Q
Sbjct: 5 QHLQQQQQQQQQQQQQQQQQQQQQ--TQVQQLHNQLHQQHNQQIQQQAQATQQHLQTQQY 62
Query: 141 NQLSIKEGPGKAVQRQTLCAQATEASGV---STNDMGFSSSALIKGSGNLNEVSHKPALI 197
Q I + ++ L + + E++ + +T F S L S +E S K +
Sbjct: 63 LQSQIHQQSQQSQLSNNLNSNSKESTNIPKTNTQYTNFDSKNLDLASRYFSECSTKDFIG 122
Query: 198 SEKPSAAM 205
++K S ++
Sbjct: 123 NKKKSTSV 130
>LUG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG
Length = 931
Score = 31.6 bits (70), Expect = 3.1
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 79 QHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQ 138
QH +S Q + Q +QQ+ Q L Q +Q Q+ + Q+QQ +Q +Q
Sbjct: 95 QHPQVSQQQQQ-----QQQQQIQMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQ 149
Query: 139 GVNQLSIKEGPGKAVQRQTLCAQATEASGVSTNDMGFSSSALIKGSGNLNEVSHKPALIS 198
Q + P Q+Q Q + S L GS N L+
Sbjct: 150 QQQQQQHQNQPPSQQQQQQSTPQHQQQPTPQQQPQRRDGSHLANGSAN--------GLVG 201
Query: 199 EKPSAAMQRLIGVFTSMSSEA 219
M++ G +S++S+A
Sbjct: 202 NNSEPVMRQNPGSGSSLASKA 222
>LMN1_CAEEL (Q21443) Lamin 1 (CeLam-1) (Ce-lamin)
Length = 566
Score = 31.6 bits (70), Expect = 3.1
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 33 FNVEKFRGHKRL--YEDIFAMFRLRKSQITPEISERVDRVETLINSIIQHQNLSSHQGKH 90
F EK R + L +D A +R+ E+ + +VE L + + Q H
Sbjct: 95 FEAEKARLRRALDSAQDELAKYRIEYDAAKVEVKKLKPQVEKLERELAG----AEEQALH 150
Query: 91 SADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPG 150
+ + + Q + L +ND L + +Q + EG
Sbjct: 151 AQSIADQSQAKQKTLQARNDKLVVENDDLK----------------KQNITLRDTVEGLK 194
Query: 151 KAVQRQTLC-AQATEASGVSTNDMGFSSSALIKGSGNLNEVSHK 193
KAV+ +TL A D+ F AL + G L EV HK
Sbjct: 195 KAVEDETLLRTAANNKIKALEEDLAF---ALQQHKGELEEVRHK 235
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,222,081
Number of Sequences: 164201
Number of extensions: 1381556
Number of successful extensions: 4350
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4264
Number of HSP's gapped (non-prelim): 78
length of query: 346
length of database: 59,974,054
effective HSP length: 111
effective length of query: 235
effective length of database: 41,747,743
effective search space: 9810719605
effective search space used: 9810719605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0005.1