BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0003.6
(1307 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 853 0.0
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 291 1e-77
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 120 3e-26
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 103 3e-21
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 96 5e-19
YMU0_YEAST (Q04670) Transposon Ty1 protein B 95 1e-18
YME4_YEAST (Q04711) Transposon Ty1 protein B 95 1e-18
YMD9_YEAST (Q03434) Transposon Ty1 protein B 95 1e-18
YJZ9_YEAST (P47100) Transposon Ty1 protein B 95 1e-18
YJZ7_YEAST (P47098) Transposon Ty1 protein B 95 1e-18
YMT5_YEAST (Q04214) Transposon Ty1 protein B 94 3e-18
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 93 4e-18
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 75 2e-12
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 65 1e-09
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 54 4e-06
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 53 6e-06
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 52 8e-06
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 52 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 853 bits (2204), Expect = 0.0
Identities = 478/1129 (42%), Positives = 679/1129 (59%), Gaps = 56/1129 (4%)
Query: 3 GAKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALR--DEKPADIATVDWNEMKEKAAGL 60
G K+EV +F+G F WQR +DLL Q+ L K L +KP + DW ++ E+AA
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 61 ITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHV 120
I L +SDDV+N+I+D T + +W +LESLYMSKT NKL+ K++LY+L M EG + +H+
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 121 YAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLPH 180
FN ++ + LGV +++EDKAI+LL SLP SYD+L TT+ +GK +I L ++S LL +
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLN 182
Query: 181 AQRRQSVEEGGGSSGEGLFVKG-GQDRGRGKGKAVDSGKKKRSKSKDR-KTTECYSCKQI 238
+ R+ E + G+ L +G G+ R SG + +SK++ + + CY+C Q
Sbjct: 183 EKMRKKPE----NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQP 238
Query: 239 GHWKRDCPN-RSGK---SG--NNSSSANVVQSDGSC-----SEEDLLCVSSVKCTDAWVL 287
GH+KRDCPN R GK SG N+ ++A +VQ++ + EE+ + +S + WV+
Sbjct: 239 GHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE--SEWVV 296
Query: 288 DSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYV 347
D+ S+H T R+ F + +GD G V +G+ I G+ + I + G L VR+V
Sbjct: 297 DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 356
Query: 348 LEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDV 407
++ NLIS L +GY + R++KG++ + + G +Y+ G++
Sbjct: 357 PDLRMNLISGIALDRDGYESYFANQK--WRLTKGSLVIAKGV-ARGTLYRTNAEICQGEL 413
Query: 408 ASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKT 467
+ + D+ + LWH R+GH+SE+G+ L K++++ + + C YC+ GKQ RV F+T
Sbjct: 414 NAAQ-DEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQT 472
Query: 468 GHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLW 527
+ ILD V+SDV GP + S+ G +YFVTF DD SRK+WVY +K K +VF F+ +
Sbjct: 473 SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKF 532
Query: 528 KAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTL 587
A VE +TGRK+K LRSDNG EYT + F +C +GI+ +V TPQ NGVAERMNRT+
Sbjct: 533 HALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTI 592
Query: 588 TEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFW 647
EK R + A L K W + ACYL+NRSP L ++ E VWT + S+L++F
Sbjct: 593 VEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFG 652
Query: 648 RPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQ 707
A+ H+ E R+KLD KS CI IGY GY+LWDPVKKKVI SRDVVF E +
Sbjct: 653 CRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTA 712
Query: 708 SDVT------------VVPDTEVENSSQDKIQVDIEETPVSPRQIVAQ-QQSEPGSD--- 751
+D++ +P T +S + ++ E P +++ Q +Q + G +
Sbjct: 713 ADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVE 772
Query: 752 ---SGEVQDYTLVRDREP---SRITPPVRYGFEDLAAYALLTSSGDPSTYHEAMAS*EKD 805
GE Q L R P SR P Y L++ +P + E ++ EK+
Sbjct: 773 HPTQGEEQHQPLRRSERPRVESRRYPSTE--------YVLISDDREPESLKEVLSHPEKN 824
Query: 806 KWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGY 865
+ M AM EEMESL+KN T LV+LP GKR + CKWV+K K K ++KA LV KG+
Sbjct: 825 QLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCK-LVRYKARLVVKGF 883
Query: 866 SQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEG 925
Q KGID+DEIFSPVV+ TSIR +L+L AS+D+ +EQ+DVKT FLHG+LEE+IY+EQPEG
Sbjct: 884 EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943
Query: 926 FSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFI 985
F G +VCKL +SLYGLKQ+PRQWY +FDS+M Y + D CVY + +FI
Sbjct: 944 FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003
Query: 986 FLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQK 1045
LLLYVDDMLI + +LK L K FDMKDLG A++ILGM+I ++R ++KLWLSQ+
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063
Query: 1046 SYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
Y+E VL RF+M A VSTPL H KLS + P E M+K+PY+
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYS 1112
Score = 125 bits (315), Expect = 6e-28
Identities = 61/115 (53%), Positives = 80/115 (69%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
GG I W+S +Q VA+STTEAEY+A E KE +WL ++ELG+ Q ++CDSQSAI
Sbjct: 1202 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAI 1261
Query: 1244 YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
L+ N +YHARTKHIDVR+H IRE++ + + KI T+EN D LTK V +KF
Sbjct: 1262 DLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 291 bits (744), Expect = 1e-77
Identities = 230/795 (28%), Positives = 370/795 (45%), Gaps = 66/795 (8%)
Query: 4 AKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADIATVDWNEMKEKAAGLITL 63
AK + FDG + +W+ + LLA++ + K + P ++ W + + A I
Sbjct: 4 AKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNEVDD-SWKKAERCAKSTIIE 61
Query: 64 CVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHVYAF 123
+SD +N T + + + L+++Y K+ ++L ++RL SLK+ L +H + F
Sbjct: 62 YLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIF 121
Query: 124 NNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTL-TYGKDSITLDSISSTLLPHAQ 182
+ +++++ G +++ DK LL +LP YD ++T + T ++++TL + + LL
Sbjct: 122 DELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEI 181
Query: 183 RRQSVEEGGGSSGEGLFVKGGQDRGRGK-GKAVDSGKKKRSKSKDRKTTECYSCKQIGHW 241
+ ++ V + + K + KK K + +C+ C + GH
Sbjct: 182 KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHI 241
Query: 242 KRDCPNRSGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDA-----WVLDSGCSYHMT 296
K+DC + + NN + N Q + S V V T +VLDSG S H+
Sbjct: 242 KKDCFHYK-RILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLI 300
Query: 297 QHREWFNSF------------KSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQV 344
+ K G+ Y K I++ +I L+D V
Sbjct: 301 NDESLYTDSVEVVPPLKIAVAKQGEFIYA----TKRGIVRLRNDHEITLED--------V 348
Query: 345 RYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIM 404
+ E NL+S+ L E G S + +++ + +SK + V++ N+ I
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFDKSG--VTISKNGLMVVKNSGMLNNV-----PVIN 401
Query: 405 GDVASVETDDDAT-KLWHMRLGHLSERGMMELHKRNMLKGVR-------SCIIGLCKYCV 456
S+ +LWH R GH+S+ ++E+ ++NM SC I C+ C+
Sbjct: 402 FQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEI--CEPCL 459
Query: 457 LGKQCRVRFKTGHHKT--KGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFM 514
GKQ R+ FK KT K L VHSDV GP ++ YFV F D F+ Y +
Sbjct: 460 NGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLI 519
Query: 515 KYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTP 574
KYKS+VF+ F+ + A+ E K+ YL DNG EY FC + GI H +V TP
Sbjct: 520 KYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTP 579
Query: 575 QQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASL--DGKVAEEV 632
Q NGV+ERM RT+TEKAR + A L K W + A YL+NR P +L K E+
Sbjct: 580 QLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEM 639
Query: 633 WTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVI 692
W L +LR+F YVHI ++ + K D KS I +GY G+KLWD V +K I
Sbjct: 640 WHNKKPYLKHLRVFGATVYVHIKNK-QGKFDDKSFKSIFVGYEP--NGFKLWDAVNEKFI 696
Query: 693 VSRDVVFDE*SMLKQSDVTVVPDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDS 752
V+RDVV DE +M+ V +T S++ + + P R+I+ Q+E ++S
Sbjct: 697 VARDVVVDETNMVNSRAVKF--ETVFLKDSKES---ENKNFPNDSRKII---QTEFPNES 748
Query: 753 GEVQDYTLVRDREPS 767
E + ++D + S
Sbjct: 749 KECDNIQFLKDSKES 763
Score = 194 bits (492), Expect = 2e-48
Identities = 116/347 (33%), Positives = 188/347 (53%), Gaps = 17/347 (4%)
Query: 742 AQQQSEPGSDSGEVQDYTLVRDREPSRIT--PPVRYGFEDLAAYALLTSSGD-----PST 794
A+ E G D+ D + +R R+ P + Y ED + ++ ++ P++
Sbjct: 834 AEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNS 893
Query: 795 YHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KERE 854
+ E +K W A+ E+ + K N T + + P K ++ +WV+ K
Sbjct: 894 FDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNEL-GNPI 952
Query: 855 KFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNL 914
++KA LV +G++Q IDY+E F+PV R +S R +L+LV ++ + QMDVKT FL+G L
Sbjct: 953 RYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTL 1012
Query: 915 EEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCV 974
+E+IY+ P+G S D VCKL +++YGLKQ+ R W++ F+ + + D C+
Sbjct: 1013 KEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCI 1070
Query: 975 YVMSLDDGSF---IFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEI 1031
Y+ LD G+ I++LLYVDD++IA + +N K L ++F M DL K +G+ I
Sbjct: 1071 YI--LDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI 1128
Query: 1032 HKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQS 1078
K++LSQ +YV+ +LS+F+M N VSTPL + L S
Sbjct: 1129 EMQE--DKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173
Score = 93.2 bits (230), Expect = 4e-18
Identities = 45/114 (39%), Positives = 72/114 (62%), Gaps = 1/114 (0%)
Query: 1187 ICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVE-QGGVQLHCDSQSAIYL 1245
ICW + Q++VA S+TEAEYMA+ EA +EALWL L+ + ++ + ++++ D+Q I +
Sbjct: 1279 ICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISI 1338
Query: 1246 TNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKFM 1299
NN H R KHID+++H RE + + I L+ I T D TKP+ + +F+
Sbjct: 1339 ANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFV 1392
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 120 bits (300), Expect = 3e-26
Identities = 132/521 (25%), Positives = 229/521 (43%), Gaps = 49/521 (9%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVT 862
EK ++ A +E+++LK + + V + + + I + T K +KA +V
Sbjct: 1285 EKHEYKQAYHKELQNLKDMKVFD-VDVKYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVC 1343
Query: 863 KGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQ 922
+G +Q Y I + + H I++ L + + +M ++ +D+ FL+ LEE+IYI
Sbjct: 1344 RGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPH 1402
Query: 923 PEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDG 982
P D R V KL ++LYGLKQSP++W Y+ IG + Y +Y +
Sbjct: 1403 PH------DRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY---QTED 1453
Query: 983 SFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAA------KKILGMEIHKDRG 1036
+ + +YVDD +IAA++ ++E KL F++K G ILGM++ ++
Sbjct: 1454 KNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKR 1513
Query: 1037 AKKLWLSQKSYVEGVLSRF--DMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
+ L+ KS++ + ++ ++ K S P + +K+ PK D + MS+ +
Sbjct: 1514 LGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKI----DPKKD--VLQMSEEEFR 1567
Query: 1095 VQLVV*CMLWFALDQIWHKQLVKCQVHVQ--AREAALGSSQVDPKI------LEGYNGSR 1146
++ L L+ + HK + V+ AR +V I L Y
Sbjct: 1568 QGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIG 1627
Query: 1147 YHV*QGARCCSISCGICGLCR*SR**KVYNRICLYSCGGPICW--------KSSVQSTVA 1198
H R C+ + + S V + S G I W S+ +
Sbjct: 1628 IHY---DRDCNKDKKVIAITDAS----VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRC 1680
Query: 1199 MSTTEAEYMAVAEAAKEALWLTGLVKELGV-EQGGVQLHCDSQSAIYLTNNQVYHARTKH 1257
+S+TEAE A+ E ++ L +KELG + + + DS+ AI N + K
Sbjct: 1681 VSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKF 1740
Query: 1258 IDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
++ I+E + + I L KI N D LTKPV++ F
Sbjct: 1741 TWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDF 1781
Score = 65.9 bits (159), Expect = 7e-10
Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 11/284 (3%)
Query: 421 HMRLGHLS----ERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKGIL 476
H R+GH E + H L ++ C+ C + K + TG
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 477 DYVHS----DVRGPTKEPSV*GFRYFVTFTDDFSRKVWV--YFMKYKSEVFAKFKLWKAE 530
S D+ GP + RY + D+ +R +F K + A+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 531 VENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEK 590
VE Q RK++ + SD GTE+T+ + GI + + NG AER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 591 ARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPA 650
A L + L W + A + N S GK+ + + P+ + +
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGE 800
Query: 651 YVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVS 694
I + + KL P II+ + GYK + P K K++ S
Sbjct: 801 KGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTS 844
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 103 bits (257), Expect = 3e-21
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 2/179 (1%)
Query: 903 MDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR 962
MDV T FL+ ++E IY++QP GF + V +L +YGLKQ+P W + ++ + +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 963 IGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGA 1022
IG+ R + + +Y S DG I++ +YVDD+L+AA + +K +L K + MKDLG
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGP-IYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 119
Query: 1023 AKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKI 1081
K LG+ IH+ + LS + Y+ S +++ TPL N L SP +
Sbjct: 120 VDKFLGLNIHQSTNG-DITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHL 177
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 96.3 bits (238), Expect = 5e-19
Identities = 87/368 (23%), Positives = 153/368 (40%), Gaps = 17/368 (4%)
Query: 419 LWHMRLGHLSERGMMELHKRNMLKGVRSCIIGL-------CKYCVLGKQCRVRFKTG--- 468
L H LGH + R + + K+N + ++ I C C++GK + R G
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRL 652
Query: 469 -HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSE--VFAKFK 525
+ ++ Y+H+D+ GP YF++FTD+ +R WVY + + E + F
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFT 712
Query: 526 LWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNR 585
A ++NQ ++ ++ D G+EYT+K F GI ++ + +GVAER+NR
Sbjct: 713 SILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNR 772
Query: 586 TLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRI 645
TL R L + L LW + + + + N D + +D++ +
Sbjct: 773 TLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAG-LDITTILP 831
Query: 646 FWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVF--DE*S 703
F +P V+ + D SK+ P+ + ++ GY ++ P KK + + + V D+ S
Sbjct: 832 FGQPVIVNNHNPD-SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQS 890
Query: 704 MLKQSDVTVVPDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSGEVQDYTLVRD 763
L Q + + + N Q IE+ + E+ LV D
Sbjct: 891 KLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSEIEINSDPLVND 950
Query: 764 REPSRITP 771
I P
Sbjct: 951 FSSQSINP 958
Score = 92.4 bits (228), Expect = 7e-18
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 35/264 (13%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHG-----KRVIGCKWVYKKKLAVT*KEREKFK 857
EKD+++ A +E+ L K T + + K+VI +++ KK T K
Sbjct: 1261 EKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRDGT------HK 1314
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH ++ S V H ++ L++ D ++ Q+D+ + +L+ +++E+
Sbjct: 1315 ARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEE 1374
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYD-----C 972
+YI P G + +L++SLYGLKQS WY+ SY++ CD
Sbjct: 1375 LYIRPP---PHLGLNDKLLRLRKSLYGLKQSGANWYETIKSYLINC----CDMQEVRGWS 1427
Query: 973 CVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKK------- 1025
CV+ S + + L+VDDM++ + L+ ++ T L K++D K + +
Sbjct: 1428 CVF-----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYD 1482
Query: 1026 ILGMEIHKDRGAKKLWLSQKSYVE 1049
ILG+EI R +KS E
Sbjct: 1483 ILGLEIKYQRSKYMKLGMEKSLTE 1506
Score = 45.1 bits (105), Expect = 0.001
Identities = 37/118 (31%), Positives = 58/118 (48%), Gaps = 5/118 (4%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE AV+EA L+ LV+EL + L DS+S I
Sbjct: 1646 GKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTDSRSTI 1705
Query: 1244 YL---TNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ TN + + R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1706 SIIKSTNEEKF--RNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1761
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 95.1 bits (235), Expect = 1e-18
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 388
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 389 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P PR ++++ + P + + + + + R P + P +
Sbjct: 508 ESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 565
Score = 93.2 bits (230), Expect = 4e-18
Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K +T + + K RVI +++ +K T K
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT------HK 872
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 873 ARFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 932
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR-IGYRRCDYDCCVYV 976
+YI P G + +LK+SLYGLKQS WY+ SY+++ G CV+
Sbjct: 933 LYIRPP---PHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF- 988
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKK-------ILGM 1029
S + + L+VDDM++ + L+ ++ T L K++D K + + ILG+
Sbjct: 989 ----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1045 EIKYQRG 1051
Score = 43.5 bits (101), Expect = 0.004
Identities = 34/116 (29%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ LV+EL + L DS+S I
Sbjct: 1204 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTI 1263
Query: 1244 -YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ +N R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1264 SIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 95.1 bits (235), Expect = 1e-18
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 388
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 389 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P PR ++++ + P + + + + + R P + P +
Sbjct: 508 ESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 565
Score = 93.2 bits (230), Expect = 4e-18
Identities = 69/247 (27%), Positives = 120/247 (47%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K T + + K RVI +++ +K T K
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT------HK 872
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 873 ARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 932
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR-IGYRRCDYDCCVYV 976
+YI P G + +LK+SLYGLKQS WY+ SY+++ G CV+
Sbjct: 933 LYIRPP---PHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF- 988
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKK-------ILGM 1029
S + + L+VDDM++ + L+ ++ T L K++D K + + ILG+
Sbjct: 989 ----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1045 EIKYQRG 1051
Score = 43.5 bits (101), Expect = 0.004
Identities = 34/116 (29%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ LV+EL + L DS+S I
Sbjct: 1204 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTI 1263
Query: 1244 -YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ +N R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1264 SIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 95.1 bits (235), Expect = 1e-18
Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K +T + + K RVI +++ KK T K
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT------HK 872
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 873 ARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 932
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR-IGYRRCDYDCCVYV 976
+YI P G + +LK+SLYGLKQS WY+ SY+++ G CV+
Sbjct: 933 LYIRPP---PHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF- 988
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKK-------ILGM 1029
S + + L+VDDM++ + L+ ++ T L K++D K + + ILG+
Sbjct: 989 ----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1045 EIKYQRG 1051
Score = 95.1 bits (235), Expect = 1e-18
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 388
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 389 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P PR ++++ + P + + + + + R P + P +
Sbjct: 508 ESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 565
Score = 43.1 bits (100), Expect = 0.005
Identities = 34/118 (28%), Positives = 58/118 (48%), Gaps = 5/118 (4%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ L++EL + L DS+S I
Sbjct: 1204 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTI 1263
Query: 1244 YL---TNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ TN + + R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1264 SIIKSTNEEKF--RNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 95.1 bits (235), Expect = 1e-18
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 815
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 816 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 874
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 875 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 934
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P PR ++++ + P + + + + + R P + P +
Sbjct: 935 ESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 992
Score = 93.6 bits (231), Expect = 3e-18
Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K +T + + K RVI +++ KK T K
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT------HK 1299
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 1300 ARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 1359
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYML-RIGYRRCDYDCCVYV 976
+YI P G + +LK+SLYGLKQS WY+ SY++ + G CV+
Sbjct: 1360 LYIRPP---PHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVF- 1415
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMK--DLGAAKK-----ILGM 1029
S + + L+VDDM++ + +L+ + KL ++D K +LG + + ILG+
Sbjct: 1416 ----KNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL 1471
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1472 EIKYQRG 1478
Score = 42.4 bits (98), Expect = 0.008
Identities = 33/116 (28%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ L++EL + L DS+S I
Sbjct: 1631 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTI 1690
Query: 1244 -YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ +N R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1691 SIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1746
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 95.1 bits (235), Expect = 1e-18
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 815
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 816 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 874
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 875 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNI 934
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P PR ++++ + P + + + + + R P + P +
Sbjct: 935 ESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 992
Score = 92.0 bits (227), Expect = 9e-18
Identities = 69/247 (27%), Positives = 120/247 (47%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K +T + + K RVI +++ KK T K
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT------HK 1299
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 1300 ARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 1359
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR-IGYRRCDYDCCVYV 976
+YI P G + +LK+S YGLKQS WY+ SY+++ G CV+
Sbjct: 1360 LYIRPP---PHLGMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF- 1415
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKK-------ILGM 1029
S + + L+VDDM++ + L+ ++ T L K++D K + + ILG+
Sbjct: 1416 ----KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1471
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1472 EIKYQRG 1478
Score = 43.1 bits (100), Expect = 0.005
Identities = 34/118 (28%), Positives = 58/118 (48%), Gaps = 5/118 (4%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ L++EL + L DS+S I
Sbjct: 1631 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTI 1690
Query: 1244 YL---TNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ TN + + R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1691 SIIKSTNEEKF--RNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 93.6 bits (231), Expect = 3e-18
Identities = 70/247 (28%), Positives = 124/247 (49%), Gaps = 27/247 (10%)
Query: 803 EKDKWMSAMVEEMESLKKNET*NLVQLPHGK-----RVIGCKWVYKKKLAVT*KEREKFK 857
EK+K++ A +E+ L K +T + + K RVI +++ +K T K
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT------HK 872
Query: 858 AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
A V +G QH + S V H ++ L+L + ++ Q+D+ + +L+ +++E+
Sbjct: 873 ARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEE 932
Query: 918 IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLR-IGYRRCDYDCCVYV 976
+YI P G + +LK+SLYGLKQS WY+ SY+++ G CV+
Sbjct: 933 LYIRPP---PHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF- 988
Query: 977 MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMK--DLGAAKK-----ILGM 1029
+ S + + L+VDDM++ + +L+ + KL ++D K +LG + + ILG+
Sbjct: 989 ----ENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGL 1044
Query: 1030 EIHKDRG 1036
EI RG
Sbjct: 1045 EIKYQRG 1051
Score = 90.9 bits (224), Expect = 2e-17
Identities = 85/358 (23%), Positives = 153/358 (41%), Gaps = 38/358 (10%)
Query: 452 CKYCVLGKQCRVRFKTG----HHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
C C++GK + R G + + Y+H+D+ GP YF++FTD+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 508 KVWVYFMKYKSE--VFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQ 565
WVY + + E + F A ++NQ + ++ D G+EYT++ F E+NGI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 566 RHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLD 625
++ + +GVAER+NRTL + R + L LW + I + +V S +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 388
Query: 626 GKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWD 685
K A + +D+S L F +P V+ SK+ P+ + ++ GY ++
Sbjct: 389 KKSARQHAGLAGLDISTLLPFGQPVIVN-DHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 686 PVKKKVIVSRDVV------------------FDE-*SMLKQSDVTVVPDTEVENS----- 721
P KK + + + V FDE + L S + + E++ S
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQQSNDLNI 507
Query: 722 -SQDKIQVDIEETPVSPRQIVAQ-----QQSEPGSDSGEVQDYTLVRDREPSRITPPV 773
S Q DIE P R ++++ + P + + + + + R P + P +
Sbjct: 508 ESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNI 565
Score = 42.4 bits (98), Expect = 0.008
Identities = 33/116 (28%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
G I KS+ S STTEAE A++E+ L+ L++EL + L DS+S I
Sbjct: 1204 GKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTI 1263
Query: 1244 -YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
+ +N R + + ++R+ ++ + + I T +N D +TKP+ F
Sbjct: 1264 SIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 93.2 bits (230), Expect = 4e-18
Identities = 48/116 (41%), Positives = 65/116 (55%), Gaps = 1/116 (0%)
Query: 375 ILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMME 434
+L+V KG T+++ R ++Y L G G+ ET D T+LWH RL H+S+RGM
Sbjct: 28 VLKVLKGCRTILKGNRH-DSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMEL 86
Query: 435 LHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEP 490
L K+ L + + C+ C+ GK RV F TG H TK LDYVHSD+ G P
Sbjct: 87 LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 74.7 bits (182), Expect = 2e-12
Identities = 37/92 (40%), Positives = 59/92 (63%), Gaps = 1/92 (1%)
Query: 807 WMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYS 866
W AM EE+++L +N+T LV P + ++GCKWV+K KL + ++ KA LV KG+
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH-SDGTLDRLKARLVAKGFH 98
Query: 867 QHKGIDYDEIFSPVVRHTSIRVVLALVASMDM 898
Q +GI + E +SPVVR +IR +L + +++
Sbjct: 99 QEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 65.1 bits (157), Expect = 1e-09
Identities = 67/242 (27%), Positives = 100/242 (40%), Gaps = 25/242 (10%)
Query: 985 IFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQ 1044
++LLLYVDD+L+ + +N L +L F MKDLG LG++I L+LSQ
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 58
Query: 1045 KSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYAVQLVV*CMLW 1104
Y E +L+ M +STPL KL+ S + I A+Q L
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQ-----YLT 111
Query: 1105 FALDQIWHKQLVKCQVHVQAREAALGSSQVDPKILEGYNGSRYH---V*QGARC-----C 1156
I + + CQ + E L + ++L G+ +H + + ++ C
Sbjct: 112 LTRPDISYAVNIVCQ---RMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFC 168
Query: 1157 SISCGICGLCR*SR**KVYNRICLYSCGGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEA 1216
C R S C + I W + Q TV+ S+TE EY A+A A E
Sbjct: 169 DSDWAGCTSTRRST-----TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAEL 223
Query: 1217 LW 1218
W
Sbjct: 224 TW 225
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 53.5 bits (127), Expect = 4e-06
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 11/246 (4%)
Query: 400 GGTIMGDVASVETDDDATKLWHM---RLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCV 456
G +M D E D +L H+ ++ L +RG + N K ++ + C C
Sbjct: 831 GKPVMPDQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQY-VADSCTVCA 889
Query: 457 LGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKY 516
+ + G + +G H ++ +P + G++Y + F D FS V + K
Sbjct: 890 QVNASKAKIGAGV-RVRGHRPGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKR 948
Query: 517 KSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQ 576
++ KL + E+ + G + L SDNG +T + + GI PQ
Sbjct: 949 ETARVVSKKLLE-EIFPRFGMP-QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQS 1006
Query: 577 NGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGN 636
+G ERMNRT+ E L L A W + +A Y +P G E+ G
Sbjct: 1007 SGQVERMNRTIKETLTKLTLAAGTRD--WVLLLPLALYRARNTP--GPHGLTPYEILYGA 1062
Query: 637 PIDLSN 642
P L N
Sbjct: 1063 PPPLVN 1068
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 52.8 bits (125), Expect = 6e-06
Identities = 63/247 (25%), Positives = 102/247 (40%), Gaps = 14/247 (5%)
Query: 400 GGTIMGDVASVETDDDATKLWHM---RLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCV 456
G +M D E D +L H+ ++ L +RG + N K ++ + C C
Sbjct: 479 GKPVMPDQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQY-VADSCTVCA 537
Query: 457 LGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKY 516
+ + G + +G H ++ +P + G++Y + F D FS V + K
Sbjct: 538 QVNASKAKIGAGV-RVRGHRPGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKR 596
Query: 517 KSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQR-HFSVRKTPQ 575
++ KL + E+ + G + L SDNG +T + + GI + H + R PQ
Sbjct: 597 ETARVVSKKLLE-EIFPRFGMP-QVLGSDNGPAFTSQVSQSVADLLGIDKLHCAYR--PQ 652
Query: 576 QNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTG 635
+G ERMNRT+ E L L A W + +A Y +P G E+ G
Sbjct: 653 SSGQVERMNRTIKETLTKLTLAAGTRD--WVLLLPLALYRARNTP--GPHGLTPYEILYG 708
Query: 636 NPIDLSN 642
P L N
Sbjct: 709 APPPLVN 715
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 52.4 bits (124), Expect = 8e-06
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 7/203 (3%)
Query: 448 IIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSR 507
+ CK C R G +T+G V+ ++ +P G++Y + F D FS
Sbjct: 733 VTSACKVCQQVNAGATRVPEGK-RTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSG 791
Query: 508 KVWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRH 567
V Y + ++ K+ + E+ + G K + SDNG + + GI
Sbjct: 792 WVEAYPTRQETAHMVAKKILE-EIFPRFGLP-KVIGSDNGPAFVSQVSQGLARTLGINWK 849
Query: 568 FSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGK 627
PQ +G ERMNRT+ E L L L W +++A +P G
Sbjct: 850 LHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--WRRLLSLALLRARNTPNRF--GL 905
Query: 628 VAEEVWTGNPIDLSNLRIFWRPA 650
E+ G P LS L + P+
Sbjct: 906 TPYEILYGGPPPLSTLLNSFSPS 928
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 51.6 bits (122), Expect = 1e-05
Identities = 59/246 (23%), Positives = 98/246 (38%), Gaps = 11/246 (4%)
Query: 400 GGTIMGDVASVETDDDATKLWHM---RLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCV 456
G +M D + E D +L H+ ++ L ER + N + +++ I CK C
Sbjct: 831 GKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKN-ITETCKACA 889
Query: 457 LGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKY 516
+ K G + +G H ++ +P + G++Y + F D FS + + K
Sbjct: 890 QVNASKSAVKQGT-RVRGHRPGTHWEIDFTEIKPGLYGYKYLLVFIDTFSGWIEAFPTKK 948
Query: 517 KSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQ 576
++ KL + E+ + G + L +DNG + K + GI PQ
Sbjct: 949 ETAKVVTKKLLE-EIFPRFGMP-QVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQS 1006
Query: 577 NGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGN 636
+G ERMNRT+ K +L W + +A Y +P G E+ G
Sbjct: 1007 SGQVERMNRTI--KETLTKLTLATGSRDWVLLLPLALYRARNTP--GPHGLTPYEILYGA 1062
Query: 637 PIDLSN 642
P L N
Sbjct: 1063 PPPLVN 1068
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.6 bits (122), Expect = 1e-05
Identities = 59/246 (23%), Positives = 95/246 (37%), Gaps = 11/246 (4%)
Query: 400 GGTIMGDVASVETDDDATKLWHMRLGH---LSERGMMELHKRNMLKGVRSCIIGLCKYCV 456
G +M D + E D +L H+ L ER + N + ++ I CK C
Sbjct: 836 GKPVMPDQFTFELLDFLHQLTHLSFSKTKALLERSYSPYYMLNRDRTLKD-ITETCKACA 894
Query: 457 LGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKY 516
+ K G + +G H ++ +P + G++Y + F D FS V + K
Sbjct: 895 QVNASKSAVKQGT-RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKK 953
Query: 517 KSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQ 576
++ KL + E+ + G + L +DNG + K + G+ PQ
Sbjct: 954 ETAKVVTKKLLE-EIFPRFGMP-QVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQS 1011
Query: 577 NGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGN 636
+G ERMNRT+ K +L W + +A Y +P G E+ G
Sbjct: 1012 SGQVERMNRTI--KETLTKLTLATGSRDWVLLLPLALYRARNTP--GPHGLTPYEILYGA 1067
Query: 637 PIDLSN 642
P L N
Sbjct: 1068 PPPLVN 1073
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 51.6 bits (122), Expect = 1e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 583 MNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSN 642
MNRT+ EK R + L K A N A +++N+ P +++ V +EVW + S
Sbjct: 1 MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60
Query: 643 LRIFWRPAYVHISSEDRSKLDPKSK 667
LR F AY+H D KL P++K
Sbjct: 61 LRRFGCVAYIHC---DEGKLKPRAK 82
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,124,058
Number of Sequences: 164201
Number of extensions: 6391096
Number of successful extensions: 16766
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16445
Number of HSP's gapped (non-prelim): 290
length of query: 1307
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1185
effective length of database: 39,941,532
effective search space: 47330715420
effective search space used: 47330715420
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0003.6