BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0592.7
(116 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM22635.1| Gag and Pol [Zea mays] 159 1e-38
ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica... 157 4e-38
ref|XP_470103.1| putative polyprotein [Oryza sativa (japonica cu... 157 4e-38
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa (japonica cultivar... 157 4e-38
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar... 157 4e-38
gb|AAK71544.1| putative polyprotein [Oryza sativa (japonica cult... 157 6e-38
emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa (japonica cultivar... 157 7e-38
gb|AAR01736.1| putative Gag and Pol polyprotein [Oryza sativa (j... 156 1e-37
gb|AAP54573.1| putative polyprotein [Oryza sativa (japonica cult... 156 1e-37
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar... 156 1e-37
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar... 156 1e-37
gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-... 156 1e-37
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-... 156 1e-37
ref|XP_475999.1| Putative polyprotein [Oryza sativa (japonica cu... 156 1e-37
ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cu... 156 1e-37
ref|XP_472438.1| OSJNBa0033G16.12 [Oryza sativa (japonica cultiv... 156 1e-37
ref|NP_912422.1| Putative gag-pol polyprotein [Oryza sativa (jap... 156 1e-37
emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa (japonica cultivar... 156 1e-37
emb|CAD41412.2| OSJNBb0078D11.12 [Oryza sativa (japonica cultiva... 156 1e-37
ref|XP_462780.1| putative retrotransposon RIRE1 poly protein [Or... 156 1e-37
>gb|AAM22635.1| Gag and Pol [Zea mays]
Length = 1264
Score = 159 bits (403), Expect = 1e-38
Identities = 75/111 (67%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ Y ++HQMDVKTAFLNGELDEE+YM+QP+
Sbjct: 825 YTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPD 884
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV+KGQ KVCKL KSLY LKQ P K+WH+KFD + + + INE D+CV
Sbjct: 885 GFVVKGQESKVCKLLKSLYGLKQAP-KQWHEKFDTTLTSAGFAINEADRCV 934
>ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 157 bits (398), Expect = 4e-38
Identities = 73/111 (65%), Positives = 94/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ +KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQERKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|XP_470103.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28876012|gb|AAO60021.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1224
Score = 157 bits (398), Expect = 4e-38
Identities = 73/111 (65%), Positives = 94/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 785 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 844
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+++ + + +NE DKCV
Sbjct: 845 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKILTSAGFAVNEADKCV 894
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa (japonica cultivar-group)]
gi|50921919|ref|XP_471320.1| OSJNBb0018J12.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1320
Score = 157 bits (398), Expect = 4e-38
Identities = 73/111 (65%), Positives = 94/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ +++ + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLISAGFAVNEADKCV 972
>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar-group)]
gi|50921825|ref|XP_471273.1| OSJNBb0043H09.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1302
Score = 157 bits (398), Expect = 4e-38
Identities = 73/111 (65%), Positives = 94/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ +++ + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLISAGFAVNEADKCV 972
>gb|AAK71544.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50918661|ref|XP_469727.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1308
Score = 157 bits (397), Expect = 6e-38
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSASFAVNEADKCV 972
>emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa (japonica cultivar-group)]
gi|50923735|ref|XP_472228.1| OSJNBb0089B03.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1113
Score = 157 bits (396), Expect = 7e-38
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 656 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 715
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 716 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEVDKCV 765
>gb|AAR01736.1| putative Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50917191|ref|XP_468992.1| putative
Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1177
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 788 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 847
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 848 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 897
>gb|AAP54573.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535968|ref|NP_922286.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15144313|gb|AAK84454.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1308
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar-group)]
gi|50923761|ref|XP_472241.1| OSJNBa0072D21.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1319
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar-group)]
gi|50930491|ref|XP_474773.1| OSJNBa0040D17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1319
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)] gi|50901368|ref|XP_463117.1|
putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1393
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 940 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 999
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 1000 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 1049
>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
gi|50916721|ref|XP_468757.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1302
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|XP_475999.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47777367|gb|AAT38001.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1297
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475093|gb|AAT44162.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1302
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|XP_472438.1| OSJNBa0033G16.12 [Oryza sativa (japonica cultivar-group)]
gi|39545722|emb|CAD40924.3| OSJNBa0033G16.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1320
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|NP_912422.1| Putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|24899398|gb|AAN64998.1| Putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1040
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 751 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 810
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 811 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 860
>emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa (japonica cultivar-group)]
gi|50922317|ref|XP_471519.1| OSJNBb0058J09.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1282
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 744 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 803
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 804 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSTGFAVNEADKCV 853
>emb|CAD41412.2| OSJNBb0078D11.12 [Oryza sativa (japonica cultivar-group)]
gi|32488578|emb|CAE03086.1| OSJNBa0017B10.1 [Oryza
sativa (japonica cultivar-group)]
gi|50927965|ref|XP_473510.1| OSJNBb0078D11.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1320
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
>ref|XP_462780.1| putative retrotransposon RIRE1 poly protein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 156 bits (395), Expect = 1e-37
Identities = 73/111 (65%), Positives = 93/111 (83%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQKEG +FDTY+PVAR+TTIRVLL+LA+ + ++HQMDVKTAFLNGELDEE+YM QP+
Sbjct: 863 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPD 922
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV++GQ KVCKL KSLY LKQ P K+WH+KFD+ + + + +NE DKCV
Sbjct: 923 GFVVEGQEGKVCKLLKSLYGLKQAP-KQWHEKFDKTLTSAGFAVNEADKCV 972
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.143 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,822,122
Number of Sequences: 2540612
Number of extensions: 6715580
Number of successful extensions: 20521
Number of sequences better than 10.0: 1508
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 18253
Number of HSP's gapped (non-prelim): 1535
length of query: 116
length of database: 863,360,394
effective HSP length: 92
effective length of query: 24
effective length of database: 629,624,090
effective search space: 15110978160
effective search space used: 15110978160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0592.7