BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590c.5
(441 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 189 1e-46
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 139 2e-31
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 131 5e-29
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 125 3e-27
ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japon... 110 9e-23
gb|AAV32123.1| putative polyprotein [Oryza sativa (japonica cult... 105 4e-21
gb|AAK50400.1| Putative retroelement [Oryza sativa] 103 1e-20
ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cu... 96 2e-18
gb|AAK52140.1| retrotransposon protein, putative, Ty3-gypsy sub-... 89 3e-16
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 89 3e-16
emb|CAD41262.1| OSJNBb0103I08.1 [Oryza sativa (japonica cultivar... 89 4e-16
ref|NP_918308.1| OSJNBa0066C06.12 [Oryza sativa (japonica cultiv... 88 5e-16
gb|AAP55192.1| putative gypsy-type retrotransposon gag-pol precu... 87 8e-16
gb|AAV59364.1| unknown protein [Oryza sativa (japonica cultivar-... 87 1e-15
gb|AAP44595.1| putative polyprotein [Oryza sativa (japonica cult... 87 1e-15
emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultiva... 86 2e-15
gb|AAR06299.1| putative gag-pol protein [Oryza sativa (japonica ... 85 4e-15
emb|CAE02456.1| OSJNBa0042D13.9 [Oryza sativa (japonica cultivar... 85 4e-15
ref|XP_468959.1| putative GAG-POL precursor [Oryza sativa (japon... 85 5e-15
emb|CAD40750.1| OSJNBa0081G05.3 [Oryza sativa (japonica cultivar... 85 5e-15
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 189 bits (481), Expect = 1e-46
Identities = 129/474 (27%), Positives = 221/474 (46%), Gaps = 69/474 (14%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
+PD + L ++ Y G +DP +HL F T+M + V C++FP++ + + WF+ LP
Sbjct: 221 LPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLREGPLGWFSDLP 280
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI++F KF Q++ ++ + L N++Q+ GESL+ +M R+S + + +
Sbjct: 281 PNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFSKVCMNIRNLN 340
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
P + +LPG L ++P +M E+R RA+ ++ EE + RK E D
Sbjct: 341 PEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEEHIDYHRK-TYAENTDN 399
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
S K R D ++ RP +G PR +Y + K
Sbjct: 400 S----KGIRPPTIPTDRERHRPNRG------------PRFHNYTPLIVPRGK------VL 437
Query: 241 DMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREI 300
D + ++ LR P P +A+ K C++HR+ GH T+ C L+ +I
Sbjct: 438 DEALQIELIPTLR-------------PSQTPPNADTSKRCQYHRNYGHTTEGCQALKDKI 484
Query: 301 DKLIRAGYQGN--------RQGQWRNGGDQNKAHKREEERAD----TKGKKKQESAAIAT 348
++L++AG+ + R+ + ++ +R++ D + +K+ ES T
Sbjct: 485 EELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRRKRSESPIRRT 544
Query: 349 KGADDTFARHS-------------------GPPVGTINTIAGGFGGGGDTHAARKRHVRA 389
+ ++ R S G P IN IAGGF GGG +++ARK+H+RA
Sbjct: 545 RPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNSARKKHLRA 604
Query: 390 VNSVHEVAFGFVH--PDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQ 441
+ SVH P IT + DF I P +DDP+V+ + ++ F + +VL+DQ
Sbjct: 605 IQSVHSTPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQ 658
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 139 bits (350), Expect = 2e-31
Identities = 117/457 (25%), Positives = 199/457 (42%), Gaps = 98/457 (21%)
Query: 12 SYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFS 71
+Y G SDP DH++++ M + +DA+ C++FP++ + A++WF LP S+ NFRD S
Sbjct: 26 TYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQGQALSWFHRLPPNSVGNFRDLS 85
Query: 72 SKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNG 131
F+ Q+ + I+ L NI+ Q+ ESL+E++ R+ A ++VE A FK
Sbjct: 86 EAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRFGQAVLQVEACSMDAVLQIFKRS 145
Query: 132 LLPG-GLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPKRVKKDRS 190
+ PG L +KP +M ++ RA+ Y + E+D ++ L G S +++
Sbjct: 146 ICPGTPFFESLAKKPPTTMDDLFRRANKYSMLEDDVRAATQQV-LVAGRPSGSNTERNTK 204
Query: 191 GEDK---GDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTD 247
D+ D +Q+ P +P L P YE+ P
Sbjct: 205 PPDRPKPSDRRQEGPS------RPKMPPLTPLSISYEKLLP------------------- 239
Query: 248 VSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAG 307
M++G SD P P + + C FH+ GH T+ C + Q +++LI+AG
Sbjct: 240 ---MIQGLSDFKW---PRPIATDPSTRDRSRRCAFHKDHGHTTETCRSFQYLVERLIKAG 293
Query: 308 YQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFARHSGP-----P 362
H ++ R DT G+ ++H+ P P
Sbjct: 294 ------------------HLKQYLRTDTGGR---------------DVSQHNNPGAPRAP 320
Query: 363 VGT---INTIAGGFGGGG-DTHAARKRHVRA------VNSVHEVAFG---------FVHP 403
V T IN I GG D+ R++ +RA +NS+ G + P
Sbjct: 321 VATKAVINYINGGPSDEEYDSRRKRQKLLRAASIRERINSIRPGLTGEGPRPIDGTIIFP 380
Query: 404 DITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
+ + ++PH+ D +++ L + F+VRR+L+D
Sbjct: 381 PVDPTRT----LQPHR-DALILSLEIGDFDVRRILVD 412
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 131 bits (329), Expect = 5e-29
Identities = 108/365 (29%), Positives = 167/365 (45%), Gaps = 51/365 (13%)
Query: 1 IPDNMKTLVLDSYSGDS---DPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFT 57
IP +M+ Y+GD DP+DH+ F M I++ D C +F ST A AWF+
Sbjct: 166 IPVSMRLSNPVVYTGDRNARDPRDHINQFLAVMDILSTPDHALCWIFRSTLTGRAQAWFS 225
Query: 58 TLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVE 117
LPRGSI +F + F+ QF+ N+ P TI L + + EGESL+EYM R++ + V
Sbjct: 226 QLPRGSIRSFDELRELFVRQFACNRRYPKTIGHLMTMVEAEGESLREYMRRFANTVIDVR 285
Query: 118 DEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEK 177
P + G + L +PARS+ E+ RA Y+L E+ + AKL
Sbjct: 286 HVGPHILSEFVAQGTRSVEFANSLVGRPARSLEELMHRAERYMLQED-----TRLAKL-- 338
Query: 178 GDTSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQR 237
+ +DRS +GD R + +P L P +
Sbjct: 339 ----GIQGHEDRSRNRRGDNTHGRQDMVRRYLEPL--PLTPLK----------------- 375
Query: 238 EETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQ 297
+ NT+V +++ G D L P+A ++ + KWC FHRS GH T++ L+
Sbjct: 376 -----ISNTEVMNIMGGNQD--LRCPPQARNFEAM-RHTGKWCLFHRSWGHRTENYDQLK 427
Query: 298 REIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKK-QESAAIATKGADDTFA 356
EI++L++ GY R + + + R E + + + + +E A KG + F
Sbjct: 428 IEIERLLKLGY-------LRRFIKRMEVYPRNERPGERREESRPREQAQEHCKGGE--FD 478
Query: 357 RHSGP 361
RHS P
Sbjct: 479 RHSPP 483
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 125 bits (314), Expect = 3e-27
Identities = 110/457 (24%), Positives = 187/457 (40%), Gaps = 34/457 (7%)
Query: 2 PDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR 61
P N K + Y GD+DP ++L + T + D K ++ P+ + A++W+TT+P
Sbjct: 353 PINFKLSNITKYKGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVALSWYTTIPP 412
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
+I ++ F F +P +DLY ++Q GE+L+ ++ ++S ++ +
Sbjct: 413 MTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDD 472
Query: 122 RACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTS 181
A K LLPG L L R ++ ++ R ++ EEDE ++ + G
Sbjct: 473 EMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERMESFARGEEDELRVQEEEAVLLG--- 529
Query: 182 PKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPW--------QSKS 233
KK + G++Q KG++ KP K+ Y R D +++ + + K
Sbjct: 530 ----KKQSKNKQISQGEEQ---KGENTGKPWKKFKYDYRQDQKKQVNFIGDGSNNEREKG 582
Query: 234 HRQREETDMVMNT-DVSDMLRG-----ASDANLVDEPEAPKYQPRDANPKKWCEFHRSAG 287
Q + T N S RG E K + + K+C+ H G
Sbjct: 583 KHQWDNTRRGRNNWGQSGKGRGQWWNSGRGRGRWWNNERGKGRENKPDQTKFCQTHGPGG 642
Query: 288 HDTDDCWTLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIA 347
H T++C++ I + RQ N+ + E D +G+ E+ +
Sbjct: 643 HSTEECYSKFCHIHGPGGHSTEECRQMTHLLEKHVNRYENKYEGARDQRGQNAIEAPQVM 702
Query: 348 TKGADDTFARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG----FVHP 403
A + P IN I GG G ++ RK +VR VN V +
Sbjct: 703 KIEAIEEV------PKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKT 756
Query: 404 DITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
I+ D EGI DP+VV + + V+RVL+D
Sbjct: 757 VISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLID 793
>ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|27764661|gb|AAO23086.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 971
Score = 110 bits (275), Expect = 9e-23
Identities = 102/443 (23%), Positives = 171/443 (38%), Gaps = 62/443 (13%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K L + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 367 IPPQFKFLPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 426
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +VED
Sbjct: 427 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVEDIT 486
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A GLL G L K+ K +++ + + EED KR++A + D
Sbjct: 487 EASVINAASAGLLEGELTRKIANKEPQTLEHLVRIIDGFAKSEEDS--KRRQAIQTEYD- 543
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
K + Q+ P R + + P + R
Sbjct: 544 -----------------------KASIAAAQAQAQVKPPR---QGQAPMTWRKFRTDRAG 577
Query: 241 DMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREI 300
VM + LR DA + P + +C FH + H T+ C +++
Sbjct: 578 KAVMAVEEVQALRKEFDAQQASNHQQPVR--KKVRKDLYCAFHGRSSHTTEQCQNIRQ-- 633
Query: 301 DKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFARHSG 360
+GN Q G +A + + +++Q+ A + R
Sbjct: 634 --------RGNAQDTRSQQGTTIEAPREAAQEQTPPVEQRQD----AQRRVIQVITRADP 681
Query: 361 PPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEV---AFGFVHPDITISMADFEGIKP 417
P G + +K H+RAV+S+ A +V+ I+ D EG+
Sbjct: 682 P--------------GQLSKRQKKMHIRAVHSITSAGKRAPQYVNQLISFGPEDAEGVMF 727
Query: 418 HKDDPIVVQLRMNSFNVRRVLLD 440
DP+V+ + F V R+L+D
Sbjct: 728 PHQDPLVISAEIAGFEVWRILVD 750
>gb|AAV32123.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1242
Score = 105 bits (261), Expect = 4e-21
Identities = 100/443 (22%), Positives = 172/443 (38%), Gaps = 58/443 (13%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 258 IPPQFKFPPVPRYSGETDPKEFLSIYKSAIKAAHGDEITKAKVIHLALDGIARSWYFNLP 317
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 318 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQAQCQVQDIT 377
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A LL G L K+ K +++ + ++ EED KR++A
Sbjct: 378 EASVINAASASLLEGELIRKIANKEPQTLEHLLRIIDGFVRGEEDS--KRRQA------- 428
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
+ + D++ + Q +G+ PR + + P + R
Sbjct: 429 --IQAEYDKASVAAAQAQAQPAIQGQP----------PR----QGQAPMTWRKFRTDRAG 472
Query: 241 DMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREI 300
VM + LR DA + P + +C FH + H T+ C +++
Sbjct: 473 KAVMAVEEVQALRKEFDAQQASNHQQP--ARKKVRKDLYCTFHGRSSHTTEQCRNIRQ-- 528
Query: 301 DKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFARHSG 360
+GN Q G +A + + +++Q DT R
Sbjct: 529 --------RGNAQDPRPQQGTTVEAPREAVQEQTPSAEQRQ-----------DTQRR--- 566
Query: 361 PPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKP 417
I I + RK +R V+S+ G +V+ I+ D EG+
Sbjct: 567 ----VIQVITRADPPSQLSKRQRKMQIRMVHSITSAGEGAPQYVNQLISFGPEDAEGVLF 622
Query: 418 HKDDPIVVQLRMNSFNVRRVLLD 440
DP+V+ + F VRR+L+D
Sbjct: 623 PHQDPLVISAEIAGFEVRRILVD 645
>gb|AAK50400.1| Putative retroelement [Oryza sativa]
Length = 1291
Score = 103 bits (256), Expect = 1e-20
Identities = 94/440 (21%), Positives = 170/440 (38%), Gaps = 51/440 (11%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 59 IPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 118
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 119 DNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDIT 178
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A GLL G L K+ K ++ + + EED KR++A + D
Sbjct: 179 EASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDS--KRRQAIQAEYDK 236
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
+ + ++ + P +P + PR + + P + R
Sbjct: 237 ASITAAQAQAQVQVA----EPPPLSVRQSQPAIQGQPPR----QSQAPITWRKFRTDRAG 288
Query: 241 DMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREI 300
VM + LR DA + P + + +C FH + H T+ C +++
Sbjct: 289 KAVMAVEEVQALRKEFDAQQASNHQQPAH--KKVRKDLYCAFHGRSSHTTEQCRNIRQ-- 344
Query: 301 DKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFARHSG 360
+GN Q G +A + + +++Q+ ++ +
Sbjct: 345 --------RGNAQNPRPQQGTTVEAPREAVQEQTPPAEQRQDVHQLSKR----------- 385
Query: 361 PPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFGFVHPDITISMADFEGIKPHKD 420
+ R V ++ S E A +++ I+ D EG+
Sbjct: 386 ------------------QKKMQTRMVHSITSAGEGAPQYLNQLISFGPEDAEGVIFPHQ 427
Query: 421 DPIVVQLRMNSFNVRRVLLD 440
DP+V+ + F VRR+L+D
Sbjct: 428 DPLVISAEIAGFEVRRILVD 447
>ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|13486715|dbj|BAB39950.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1579
Score = 96.3 bits (238), Expect = 2e-18
Identities = 101/449 (22%), Positives = 177/449 (38%), Gaps = 56/449 (12%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ T A +W+ LP
Sbjct: 59 IPPQFKFPPVPCYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLTLDGIARSWYFNLP 118
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 119 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDIT 178
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A GLL G L K+ K +++ ++ + EED
Sbjct: 179 EASVINAASAGLLEGELTRKIANKEPQTLKQLLRIIDGFARGEEDS-------------- 224
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHR--QRE 238
KR + ++ DK + V +P+ + + + + P Q ++ ++
Sbjct: 225 --KRRQAIQAEYDKASVAAAQAHAQVQVAEPSPLSVRQSQPAIQGQPPRQGQAPITWRKF 282
Query: 239 ETDM----VMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCW 294
TD VM + LR DA + P + +C FH + H T+ C
Sbjct: 283 RTDCAGKAVMAVEEVQALRKEFDAQQASNHQQPAR--KKVRKDLYCAFHGRSSHTTEQCR 340
Query: 295 TLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDT 354
+++ +GN Q + K A + ++Q S A + D
Sbjct: 341 NIRQ----------RGNAQ--------DPRPQKGTTFEASREAIQEQTSPA---EQCQDV 379
Query: 355 FARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG---FVHPDITISMAD 411
R I I + +K +R V+S+ V G +++ I+ D
Sbjct: 380 QRR-------VIQVITRADPPSQLSKRQKKMQIRMVHSITSVGEGAPQYLNQLISFGPED 432
Query: 412 FEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
+ PH+ D +V+ + F VRR+L+D
Sbjct: 433 AGVMFPHQ-DLLVISAEIAGFEVRRILVD 460
>gb|AAK52140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|34896326|ref|NP_909507.1| putative gag-pol
polyprotein [Oryza sativa]
Length = 1201
Score = 89.0 bits (219), Expect = 3e-16
Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 49/440 (11%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + K ++ A +W+ LP
Sbjct: 70 IPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDKNTKAKVIHLALDGIARSWYFNLP 129
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 130 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRLGESIREYMRRFSQARCQVQDIT 189
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A LL G L K+ K + + + + EED KR++A
Sbjct: 190 EASVINAASASLLEGELTRKIANKEPQMLEHLLRIIDGFARGEEDS--KRRQA------- 240
Query: 181 SPKRVKKDRSGEDKGDGKQQ-RPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREE 239
+ + D++ +QQ + K + + + + + P + R
Sbjct: 241 --IQAEYDKAFVAAAQAQQQVQVVKPPPLVVRQPQPAIQAQPPRQGQAPMTWRKFRTDRA 298
Query: 240 TDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQRE 299
VM + LR DA + P + +C FH + H T+ C +++
Sbjct: 299 GKAVMAVEEVQALRKEFDAQQASNHQQP--VRKKVRKDLYCTFHGRSSHTTEQCRNIRQ- 355
Query: 300 IDKLIRAGYQGNRQGQWRNGGDQNKAHKR--EEERADTKGKKKQESAAIATKGADDTFAR 357
+GN Q G +A + +E+ T+ ++ + I D
Sbjct: 356 ---------RGNAQDPRTQQGAVAEATREIAQEQAPPTEQRQDAQRRVIQVITRVD---- 402
Query: 358 HSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEG 414
PP+ + +K +R V+++ G +++ I D EG
Sbjct: 403 ---PPIQL-------------SKRQKKMQLRTVHNITLAGEGTPQYLNQQIFFGPEDVEG 446
Query: 415 IKPHKDDPIVVQLRMNSFNV 434
+ DP+V+ + + F V
Sbjct: 447 VMFPHQDPLVISIEIAGFEV 466
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 89.0 bits (219), Expect = 3e-16
Identities = 75/295 (25%), Positives = 120/295 (40%), Gaps = 28/295 (9%)
Query: 2 PDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR 61
P K + L +SG +DP+ L+ F + ++ V + F + A+AW++ L
Sbjct: 170 PTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEGDALAWYSMLRP 229
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
GSI ++ + K L F + +T DL+ RQ +GE+L+EY R+ +
Sbjct: 230 GSIYSWENLRDKILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFVQTKARAPGVPK 289
Query: 122 RACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTS 181
A GL G + L R+ SM E+ Y + D RKR + S
Sbjct: 290 EVAIEAAIKGLRIGPFAAHLAREKPASMHELYHEFEKYCRSDND---YRKRL---EDQNS 343
Query: 182 PKRVKKDRSGEDKGDGK-QQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
KR DR+ + K + ++RP + EQ P+ D E RP +R
Sbjct: 344 QKRQSNDRNSQKKDLSRDERRPQREAGGQMMNIEQ--PKNDRPENNRPPVEARSSERVP- 400
Query: 241 DMVMNTDVSDMLRGASDAN-LVDEPEAPKYQPRDANPKKWCEFH-RSAGHDTDDC 293
+ RG +A ++ + P+ K++C FH GH T DC
Sbjct: 401 --------NQAGRGGRNAGWRKNQSQRPR--------KQYCFFHGEEKGHSTRDC 439
>emb|CAD41262.1| OSJNBb0103I08.1 [Oryza sativa (japonica cultivar-group)]
gi|38344986|emb|CAE02792.2| OSJNBa0011L07.16 [Oryza
sativa (japonica cultivar-group)]
gi|50927102|ref|XP_473360.1| OSJNBa0011L07.16 [Oryza
sativa (japonica cultivar-group)]
Length = 393
Score = 88.6 bits (218), Expect = 4e-16
Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
Query: 10 LDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRD 69
+ Y GD+DP ++L + T + D K ++ P+ + A++W+TT+P +I ++
Sbjct: 186 IPQYKGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVALSWYTTIPPMTIYSWEH 245
Query: 70 FSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFK 129
F F +P ++LY ++Q GE+L+ +M ++S ++ + + K
Sbjct: 246 MRDTFRAGFIGVYEEPKEADNLYAMKQMPGETLRSFMVKFSRIRCQIRQVDEEMLIASAK 305
Query: 130 NGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDE--AFKRKRAKLEKGDTSPKRVKK 187
LLPG L L R ++ ++ R ++ EEDE + A L K T K+V
Sbjct: 306 RALLPGPLRFDLARNRPKTAKDLFERMESFARGEEDELRVQAEEAALLGKKQTKNKQVS- 364
Query: 188 DRSGEDKGDGKQQRPGKGKS 207
GE++ +P K S
Sbjct: 365 --LGEEQKAENTAKPWKKNS 382
>ref|NP_918308.1| OSJNBa0066C06.12 [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 88.2 bits (217), Expect = 5e-16
Identities = 44/165 (26%), Positives = 80/165 (47%)
Query: 2 PDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR 61
P N K + Y GD DP ++L + T + D VK ++ P+ + A++W+TT+P
Sbjct: 5 PTNFKLSNITKYRGDIDPNEYLRVYETIVEETGGDDTVKAKILPTMLEGVALSWYTTIPP 64
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
+I ++ F F +P +DLY ++Q GE+L+ ++ ++S ++ +
Sbjct: 65 MTIYSWEHMMDTFRAGFVGAYEEPKETDDLYAMKQLPGETLRSFIVKFSRVRCQIRQVDD 124
Query: 122 RACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDE 166
A K LLPG L L R ++ ++ R ++ EED+
Sbjct: 125 EMLIAAAKRALLPGPLRFDLARNIPKTAKDLFERMESFTKGEEDK 169
Score = 40.4 bits (93), Expect = 0.11
Identities = 39/158 (24%), Positives = 61/158 (37%), Gaps = 28/158 (17%)
Query: 287 GHDTDDCWTLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAI 346
GH ++CW + ++K I +NK E+RA + Q +
Sbjct: 182 GHSIEECWHMAHLVEKHINQY--------------ENKYKGAREQRAQNAIEAPQ---VL 224
Query: 347 ATKGADDTFARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG----FVH 402
+ D+ P IN I G G ++ RK +VR +N V +
Sbjct: 225 KIEAIDEV-------PKRVINAITEGSSLGIESKRQRKAYVRQINHVGTSNQSNPPTYSK 277
Query: 403 PDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
I+ D EGI DP+VV + + V+RVL+D
Sbjct: 278 TVISFGPEDAEGILFPHQDPLVVSVEITQCEVQRVLID 315
>gb|AAP55192.1| putative gypsy-type retrotransposon gag-pol precursor [Oryza sativa
(japonica cultivar-group)] gi|37537206|ref|NP_922906.1|
putative gypsy-type retrotransposon gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|12039388|gb|AAG46174.1| putative gypsy-type
retrotransposon GAG-POL precursor [Oryza sativa]
Length = 785
Score = 87.4 bits (215), Expect = 8e-16
Identities = 97/415 (23%), Positives = 160/415 (38%), Gaps = 69/415 (16%)
Query: 2 PDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR 61
P K ++ Y G ++P+ L + + P ++A +W LPR
Sbjct: 284 PAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALANSARSWLHGLPR 343
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
G+I ++ + F+ F +P T DLYN+ Q+ GESL++Y+ R+S K+ D
Sbjct: 344 GTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSEQRNKISDITD 403
Query: 122 RACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDE--------EDEAFKRKRA 173
AF G+ L K RKP R++ +M +A Y E +K K+
Sbjct: 404 DIIIAAFTKGIRHEDLVGKFGRKPPRTVKQMFEKAHEYAKAEYAITASKQSGTTWKPKKD 463
Query: 174 KLEKGDTSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKS 233
G + KDR D+G K+ K PT Q + + ++ P +S
Sbjct: 464 TPTAGGSGSNN-HKDRKHGDQGTSKK----KDDEDDAPTGFQDHRKELNHIFGGPLAYES 518
Query: 234 HRQREETDMVMNT------------------DVSDMLRGASDANL---VDEPEAPK---- 268
R+++ T+ +N D+SD + D + D P P+
Sbjct: 519 KRKQKLTEREINAVQPNTPQYLRWSEIAIKFDLSDHVEDNKDIFVWKPSDMPGIPREVIE 578
Query: 269 ---YQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGY---------------QG 310
+ DA P K + R D D ++ E+ KL+ AG+
Sbjct: 579 HSLHVKEDAKPIK--QRLRRFAQDRKD--AIKEELTKLLAAGFIKEVLHPDWLANPVLVR 634
Query: 311 NRQGQWR---NGGDQNKAHKREE---ERADTKGKKKQ---ESAAIATKGADDTFA 356
+ GQWR + D NK+ ++ R D G+ + + + TK DD A
Sbjct: 635 KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQIGRNVEAYVDDIVVKTKQKDDLIA 689
>gb|AAV59364.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|50933147|ref|XP_476101.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|53981366|gb|AAV24920.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1279
Score = 87.0 bits (214), Expect = 1e-15
Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 25/277 (9%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 326 IPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 385
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ++GES++EYM R+S A +V+D
Sbjct: 386 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRQGESIREYMRRFSQAWCQVQDIT 445
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSM------------GEMRARASTYILDEEDE-- 166
+ A GLL G L K+T K +++ GE ++ I E D+
Sbjct: 446 EASVINAASAGLLEGELTRKITNKEPQTLEHLLRIIDGFARGEENSKRRQAIQAEYDKAS 505
Query: 167 -AFKRKRAKLEKGDTSPKRVKKDR---SGEDKGDG-------KQQRPGKGKSVFKPTKEQ 215
A + +A+++ + P +++ + G+ G K + GK+V + Q
Sbjct: 506 IAAAQAQAQVQVAEPPPPFIRQSQPAIQGQPPRQGQAPLTWRKFRTDRAGKAVMAIEEVQ 565
Query: 216 LYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDML 252
+ D +Q Q + ++R ++ D L
Sbjct: 566 ALRKEFDAQQASNHQQPARKKRRVIQVITRADPPSQL 602
>gb|AAP44595.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34896514|ref|NP_909601.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 518
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/171 (29%), Positives = 80/171 (46%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++D K+ L + + + + K ++ A +W+ LP
Sbjct: 292 IPPQFKYPPVPQYSGETDSKEFLSIYESAIEAAHGDENTKAKLIHLVLDGIARSWYFNLP 351
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T DL I Q++GES +EY+ R+ A +V+D
Sbjct: 352 VNSIYSWEQLRDVFVLNFRGTYEEPKTQQDLVGIHQRQGESTREYIRRFLQARCQVQDIT 411
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRK 171
+ A GLL G L KL RK R++ + Y DEED +R+
Sbjct: 412 EASVIHAASAGLLEGELTRKLVRKEPRTLEHLFRIIDGYARDEEDTKRRRE 462
>emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)]
gi|50930473|ref|XP_474764.1| OSJNBb0033G08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1847
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 427 IPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 486
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ++GES++EYM R+S A +V+D
Sbjct: 487 ANSIYSWEQLRDVFVLNFRGTYKEPKTQQHLLGIRQKQGESIREYMRRFSQARCQVQDIT 546
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRA 173
+ A GLL G L K+ K +++ + + EED KR++A
Sbjct: 547 KASVINAASAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDS--KRRQA 597
>gb|AAR06299.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|50916463|ref|XP_468628.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1653
Score = 85.1 bits (209), Expect = 4e-15
Identities = 45/163 (27%), Positives = 76/163 (46%)
Query: 2 PDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR 61
P + K ++ Y G ++P+ L + + + P +A +W LPR
Sbjct: 346 PADFKPTGIEKYDGTTNPESWLTVYGLAVRAVGGDSKAMANYLPVALADSARSWLHGLPR 405
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
G+I ++ + F+ F +P T DLYNI Q+ GESL++Y+ R+S K+ D
Sbjct: 406 GTIGSWAELRDHFIANFQGTFERPGTHFDLYNIVQKSGESLRDYIRRFSKQRNKISDITD 465
Query: 122 RACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEE 164
AF G+ L K RKP +++ +M +A+ Y E+
Sbjct: 466 DVIIAAFTKGIRHEDLVGKFGRKPPKTVKQMFEKANEYAKAED 508
>emb|CAE02456.1| OSJNBa0042D13.9 [Oryza sativa (japonica cultivar-group)]
gi|50922033|ref|XP_471377.1| OSJNBa0042D13.9 [Oryza
sativa (japonica cultivar-group)]
Length = 303
Score = 85.1 bits (209), Expect = 4e-15
Identities = 50/173 (28%), Positives = 82/173 (46%), Gaps = 2/173 (1%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++DPK+ L + + + + K ++ A +W+ LP
Sbjct: 59 IPPQFKFPPVSRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 118
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 119 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDIT 178
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRA 173
+ A GLL G L K+ K +++ + + EED KR++A
Sbjct: 179 EASVINAALAGLLEGELTKKIANKEPQTLEHLLRIIDGFARGEEDS--KRRQA 229
>ref|XP_468959.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|29244661|gb|AAO73254.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 908
Score = 84.7 bits (208), Expect = 5e-15
Identities = 68/298 (22%), Positives = 118/298 (38%), Gaps = 12/298 (4%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG++D K+ L + + + + K ++ A +W+ LP
Sbjct: 367 IPPQFKFPPVPRYSGETDLKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 426
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 427 ANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQAWCQVQDIT 486
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDT 180
+ A GLL G L K+ K +++ + + EED +R+ + E
Sbjct: 487 EASVINAASAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSK-RRQAIQAEYNKA 545
Query: 181 SPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREET 240
S + + + P +P + PR+ + P + R
Sbjct: 546 SVAAAQAQAQVQ-----VAEPPPLSVHQSQPAIQGQPPRQG----QAPKTWRKFRTDRAG 596
Query: 241 DMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQR 298
VM + LR DA + P + +C FH + H T+ C +++
Sbjct: 597 KAVMAVEEVQALRKVFDAQQASNHQQPAR--KKVRKDLYCAFHGRSSHTTEQCRNIRQ 652
>emb|CAD40750.1| OSJNBa0081G05.3 [Oryza sativa (japonica cultivar-group)]
gi|50923491|ref|XP_472106.1| OSJNBa0081G05.3 [Oryza
sativa (japonica cultivar-group)]
Length = 555
Score = 84.7 bits (208), Expect = 5e-15
Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 14/299 (4%)
Query: 1 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLP 60
IP K + YSG+ DPK+ L + + + + K ++ A +W+ LP
Sbjct: 260 IPPQFKFPPVPRYSGEIDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLP 319
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
S ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 320 ANSNYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDIT 379
Query: 121 PRACALAFKNGLLPGGLNSKLTRKPARSMGEMRARASTYILDEED-EAFKRKRAKLEKGD 179
+ A GL+ G L + K +++ + + EED + ++ +A+ +K
Sbjct: 380 EASVINAALAGLVEGELTRNIANKEPQTLEHLLRIIDRFARGEEDSKRWQAMQAEYDKAS 439
Query: 180 TSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREE 239
+ + + + ++P +P + PR + + P + R
Sbjct: 440 IAAAQAQAQVQVAEPPPLAVRQP-------QPAIQGQPPR----QGQAPMTRRKFRTDRA 488
Query: 240 TDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQR 298
+ VM + LR DA + P + +C FH + H T+ C +++
Sbjct: 489 GNAVMAIEEVQALRKEFDAQQASNHQQP--VRKKVRKDLYCAFHCRSSHSTEQCRNIRQ 545
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 795,300,714
Number of Sequences: 2540612
Number of extensions: 36118393
Number of successful extensions: 148489
Number of sequences better than 10.0: 1077
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 145287
Number of HSP's gapped (non-prelim): 2589
length of query: 441
length of database: 863,360,394
effective HSP length: 131
effective length of query: 310
effective length of database: 530,540,222
effective search space: 164467468820
effective search space used: 164467468820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0590c.5