BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590c.10
(993 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 427 e-117
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 426 e-117
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 426 e-117
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 424 e-117
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 415 e-114
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 403 e-110
gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cult... 394 e-108
gb|AAP44597.1| putative polyprotein [Oryza sativa (japonica cult... 389 e-106
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 385 e-105
ref|XP_476165.1| putative polyprotein [Oryza sativa (japonica cu... 384 e-105
gb|AAL76007.1| prpol [Zea mays] 383 e-104
gb|AAT93843.1| putative polyprotein [Oryza sativa (japonica cult... 382 e-104
gb|AAP53022.1| putative polyprotein [Oryza sativa (japonica cult... 375 e-102
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 375 e-102
emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultiva... 373 e-101
gb|AAP05806.1| putative GAG-POL precursor [Oryza sativa (japonic... 373 e-101
ref|XP_471225.1| OSJNBb0016B03.14 [Oryza sativa (japonica cultiv... 372 e-101
gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cult... 372 e-101
gb|AAU90124.1| putative polyprotein [Oryza sativa (japonica cult... 372 e-101
gb|AAO66539.1| retrotransposon protein, putative, unclassified [... 370 e-100
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 427 bits (1097), Expect = e-117
Identities = 216/545 (39%), Positives = 326/545 (59%), Gaps = 20/545 (3%)
Query: 464 VAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLER 523
+ A+NN+AEYEA+++GL LA + + L I +DSQLV V+ ++ KD + +YL +
Sbjct: 487 LGFSASNNEAEYEAILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARMARYLAK 546
Query: 524 VRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACV 583
VR + F E +E + RA+N+RADALA +A++ + PS+ E+ C
Sbjct: 547 VRNTLQQFTEWTIEKIKRADNRRADALAGIAASLSIKEAILLPIHVQTNPSVS-EISICS 605
Query: 584 SR------GRTWMDPIISI-----LEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFST 632
+ + WM+ I L GDP + + + +A+ +TLI GHLY+R F+
Sbjct: 606 TTEAPQADDQEWMNDITEYIRTGTLPGDPKQAHKV----RVQAARFTLIGGHLYKRSFTG 661
Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
P L+C+ + + +++E+HEG+ +H GGRSLA + G+YWPT++K+ +VK+C +C
Sbjct: 662 PYLRCLGHSEAQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKC 721
Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
Q +A + P L ++S PWPFA WG+D+V P PTA AQ KF+LVA DYF+KW+EAE
Sbjct: 722 QRYAPIPHMPSTTLKSISGPWPFAQWGMDIVRPLPTAPAQKKFLLVATDYFSKWVEAEAY 781
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
A + F WK I+CRFGIP+ I++DNG QF S R FC E+ I+ +++ +PQ+
Sbjct: 782 ASTKDKDVTKFVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQS 841
Query: 813 NGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML 872
NGQ E+ N+ ++ L++RL +AKG W++ELP VLW+Y TT T TPF + YG+DA++
Sbjct: 842 NGQAEATNKTLITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVI 901
Query: 873 PVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRE 932
P+EI T T + + + LD E R+ A IR +QR +A +N +VR R
Sbjct: 902 PIEIGLPTIWTNAAKQSDANMQLGRNLDWTDEVRESASIRMADYQQRASAHYNRKVRPRS 961
Query: 933 MQVGDLVLKW----RSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLS 988
++ G LVL+ + K NWEGPY + K NGAYHL++LDG L R +N +
Sbjct: 962 LKNGTLVLRKFFENTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSN 1021
Query: 989 LRYFY 993
L+ +Y
Sbjct: 1022 LKQYY 1026
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 426 bits (1096), Expect = e-117
Identities = 219/537 (40%), Positives = 334/537 (61%), Gaps = 8/537 (1%)
Query: 464 VAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLER 523
+ KA+NN+AEYEA IAG+K+ + + ++TDSQLV +Q++G ++ ++P + KYL+
Sbjct: 228 IKFKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQM 287
Query: 524 VRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE-GELMAC 582
++ L + V VPRA+N +ADAL+KLAS+ N++V+ E + SI+ E + C
Sbjct: 288 IKDLAAQLISLEVVLVPRADNSQADALSKLASSTLQDLNRTVMVEVMEQRSIDKAERINC 347
Query: 583 VSRGRTWMDPIISI-LEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPE 641
V+ + W D I L G + + K +R++ Y + G LY+R S PLL+C
Sbjct: 348 VTAQKEWYDDIQEYKLTGKLPDDQTIAKAVKRDSHWYIIYQGQLYKRSDSYPLLRCTSES 407
Query: 642 KYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKA 701
+ M E EG+C +HIGG++L+ +V+R G YWPT+ KDC+ +VK+C +CQ FA +
Sbjct: 408 EKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKCQKFAPVMNQ 467
Query: 702 PPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIV 761
P +L + P PFA WG+D++GPF TA K+++VAVDYFTKWIEAEP I + ++
Sbjct: 468 PANDLCPILNPIPFAQWGMDILGPFTTASGGRKYLIVAVDYFTKWIEAEPTKFIKARQVR 527
Query: 762 NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANR 821
+F WK I+ RFGIP+ IV D+GTQF +++C E I+ A+V HPQ+NGQ E+AN+
Sbjct: 528 SFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANK 587
Query: 822 VILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTW 881
IL L+++L E KG W D +P VLW+ TTE+ T ++PF + +G +A++P+E+ ++
Sbjct: 588 QILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSF 647
Query: 882 RTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLK 941
R + E N+ M LD L E R +A ++ A K R++ +N RVR R + GDLVL+
Sbjct: 648 RVQHYDPEVNEQLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLR 707
Query: 942 WRSGAPG-----NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
R+ A G K T NWEGPY+I + + G+Y L ++G L SFN L+ ++
Sbjct: 708 -RTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNSFNADVLKKYF 763
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 426 bits (1096), Expect = e-117
Identities = 219/537 (40%), Positives = 334/537 (61%), Gaps = 8/537 (1%)
Query: 464 VAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLER 523
+ KA+NN+AEYEA IAG+K+ + + ++TDSQLV +Q++G ++ ++P + KYL+
Sbjct: 228 IKFKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQM 287
Query: 524 VRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE-GELMAC 582
++ L + V VPRA+N +ADAL+KLAS+ N++V+ E + SI+ E + C
Sbjct: 288 IKDLAAQLISLEVVLVPRADNSQADALSKLASSTLQDLNRTVMVEVMEQRSIDKAERINC 347
Query: 583 VSRGRTWMDPIISI-LEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPE 641
V+ + W D I L G + + K +R++ Y + G LY+R S PLL+C
Sbjct: 348 VTAQKEWYDDIQEYKLTGKLPDDQTIAKAVKRDSHWYIIYQGQLYKRSDSYPLLRCTSES 407
Query: 642 KYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKA 701
+ M E EG+C +HIGG++L+ +V+R G YWPT+ KDC+ +VK+C +CQ FA +
Sbjct: 408 EKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKCQKFAPVMNQ 467
Query: 702 PPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIV 761
P +L + P PFA WG+D++GPF TA K+++VAVDYFTKWIEAEP I + ++
Sbjct: 468 PANDLCPILNPIPFAQWGMDILGPFTTASGGRKYLIVAVDYFTKWIEAEPTKFIKARQVR 527
Query: 762 NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANR 821
+F WK I+ RFGIP+ IV D+GTQF +++C E I+ A+V HPQ+NGQ E+AN+
Sbjct: 528 SFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANK 587
Query: 822 VILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTW 881
IL L+++L E KG W D +P VLW+ TTE+ T ++PF + +G +A++P+E+ ++
Sbjct: 588 QILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSF 647
Query: 882 RTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLK 941
R + E N+ M LD L E R +A ++ A K R++ +N RVR R + GDLVL+
Sbjct: 648 RVQHYDPEVNEQLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLR 707
Query: 942 WRSGAPG-----NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
R+ A G K T NWEGPY+I + + G+Y L ++G L SFN L+ ++
Sbjct: 708 -RTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNSFNADVLKKYF 763
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 424 bits (1090), Expect = e-117
Identities = 219/544 (40%), Positives = 330/544 (60%), Gaps = 8/544 (1%)
Query: 453 IKEIVKASGAMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQV 512
+K+ +K S +V +TNN AEYE ++ ++ AR + R L+++TDS+LV +F+
Sbjct: 1462 MKQTLKYSVQLV-FPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEA 1520
Query: 513 KDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAY 572
K+ + KYLE R F + V+ + R EN AD LAK A+T +P N + +
Sbjct: 1521 KEETMAKYLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFF--DIITQ 1578
Query: 573 PSIEGELMACVSRGRTWMDPIISIL-EGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFS 631
PS E + +AC+ R W +PI+ L E E+ K Q + Y +++G LY+ G +
Sbjct: 1579 PSYEKKEVACIQREGDWREPILKYLVSAQLPEKEEEAKRIQLMSKKYKVVEGQLYKSGVT 1638
Query: 632 TPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKE 691
PLLKCV E+ ++ E+HEG+C +H S+A KV+R G YWPT+ KD ++K CK
Sbjct: 1639 APLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEKYIKTCKA 1698
Query: 692 CQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEP 751
CQ F ++KAPPKEL + WPF WG+D+VGP P A+ ++F++VA++YF++WIEAE
Sbjct: 1699 CQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEA 1758
Query: 752 LAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQ 811
+A+ITSA + F WK I+CRFGIP+ IV DNG QF S + ++ CK + +Q+ FASV HPQ
Sbjct: 1759 VARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQINFASVGHPQ 1818
Query: 812 TNGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDA 870
TNG VE AN I+ +++RL AKG W ++L +VLW+ TT +T TPFR+ YG +A
Sbjct: 1819 TNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEA 1878
Query: 871 MLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRV 930
M P E+ + R F+++++ + L++L E R EA + + + + +N +V+
Sbjct: 1879 MTPSEVGAHS--PRMIFDQKDEEGREITLEMLDEIRVEALEKMASYTEGTKSYYNQKVKT 1936
Query: 931 REMQVGDLVL-KWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSL 989
R ++ GDLVL K + KL WEGP+ + K GA+ L LDG L ++N +SL
Sbjct: 1937 RPIEEGDLVLKKVLNEVAVGKLESKWEGPFIVKKKTETGAFKLAYLDGEELKHTWNAVSL 1996
Query: 990 RYFY 993
+ FY
Sbjct: 1997 KKFY 2000
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 415 bits (1067), Expect = e-114
Identities = 220/545 (40%), Positives = 325/545 (59%), Gaps = 9/545 (1%)
Query: 453 IKEIVKASGAMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQV 512
+K+ +K S A + +TNN AEYE ++ ++ +R + R L+I+TDS+LV TF+
Sbjct: 919 MKQTLKYS-ARLNFPSTNNTAEYEGVLLAMRKSRALGARRLIIKTDSKLVAGHFSKTFEA 977
Query: 513 KDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAY 572
++ + KYLE R F + V+ + R EN AD L K A+ +P N E L +
Sbjct: 978 REEIMTKYLEEARLNERHFLGITVKAITREENGEADELTKAAAAGQPLENSFF--EILEH 1035
Query: 573 PSIEGELMACVSR-GRTWMDPIISILEGDPA-EVEQCTKEQQREASHYTLIDGHLYRRGF 630
PS + + + C+ G W DPI+ L + E E+ + Q A Y +IDG LY+ G
Sbjct: 1036 PSYDKKEVICIQEEGLDWRDPILKFLVSNKLPEKEEEARRVQLMARKYKVIDGQLYKSGV 1095
Query: 631 STPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCK 690
+ PLLKCV E+ ++ E+HEG+C +H RS+A KV+R G YWPT+ KD ++K C+
Sbjct: 1096 TAPLLKCVTKEEGMQMVVEIHEGICGAHQAPRSVASKVIRQGIYWPTIMKDTEQYIKTCR 1155
Query: 691 ECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAE 750
CQ SKAPPKEL + WPF WG+D+VGP P A+ ++F++VA++YF++WIEAE
Sbjct: 1156 ACQKVGSSSKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAE 1215
Query: 751 PLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHP 810
+A+ITSA + F WK I+CRFGIP+ IV DNG QF S + ++ C+ + +++ FASV HP
Sbjct: 1216 AVARITSAAMQKFVWKNIICRFGIPKEIVCDNGKQFESEKFKDLCQGLHLKINFASVGHP 1275
Query: 811 QTNGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVD 869
QTNG VE AN ++ +++RL +KG W ++L +VLW+ TT T TPFR+ YG +
Sbjct: 1276 QTNGAVERANGKVVEAIKKRLEGSSKGKWPEDLLSVLWALRTTVVWATGMTPFRLVYGDE 1335
Query: 870 AMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVR 929
M P E+ R F +E++ V L++L E R EA + A + ++N +VR
Sbjct: 1336 PMTPSEVG--VNSPRVIFYQEDEQGRKVSLEMLDEIRVEALQKMEAYTEGTRKQYNKKVR 1393
Query: 930 VREMQVGDLVL-KWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLS 988
R ++ GDLVL K + KL WEGP+ + K + GAY L LDG L ++N +S
Sbjct: 1394 PRNIEEGDLVLKKVLNEVAVGKLESKWEGPFIVRKKMEIGAYKLAHLDGEELNHTWNAIS 1453
Query: 989 LRYFY 993
L+ FY
Sbjct: 1454 LKKFY 1458
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 403 bits (1036), Expect = e-110
Identities = 217/533 (40%), Positives = 308/533 (57%), Gaps = 9/533 (1%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
KATNN AEYE LI GL A+ ++L+I+TDSQ+V QV+ + +P L +YL VR
Sbjct: 1347 KATNNIAEYEGLILGLNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPELARYLAVVRG 1406
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRKP---GNNKSVIQETLAYPSIEGELMACV 583
L F+ ++Y+PRAEN AD LAK A+ P G ++ + +
Sbjct: 1407 LERRFKGFTLQYIPRAENYEADELAKAAANNTPLPEGTFHQIVTTPATETLPKAFRSVLL 1466
Query: 584 SRGRTWMDPIISILEGDPAEVEQCT-KEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEK 642
+ W I L+G ++ T K + A +YT IDG LY++G PLLKC+ +
Sbjct: 1467 TESEDWRQAIADCLKGKTTVDDEATAKRMEARARNYTSIDGILYKKGVVQPLLKCISQSE 1526
Query: 643 YEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAP 702
++ E+H G+C SHIG R+L+ K LR GFYWPT +D + VK CK CQ F+ + P
Sbjct: 1527 GRELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGP 1586
Query: 703 PKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVN 762
+ A WP WG+DLVGP PTA+ KF +VA++YFT+WIEA+PL ITS I
Sbjct: 1587 SALTQLIPASWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPLTTITSETIRK 1646
Query: 763 FYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRV 822
F+W+ IVCRFG+PR + DNG QF S +EFC +G ++ FASV HP++NG VE ANR
Sbjct: 1647 FFWQNIVCRFGVPRLLTVDNGKQFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANRT 1706
Query: 823 ILRGLRRRLAE-AKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTW 881
I + + L KG W++ELP V+WS+NTT T TPF++ YG +AMLP EI + +
Sbjct: 1707 IFSAISKTLLNLRKGKWVEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLPEEIKHQSL 1766
Query: 882 RTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLK 941
R+ E++ + L R EA T +Q + +V +++Q GDLVL+
Sbjct: 1767 RSMKQQLAEDEEYCK---ETLESIRLEAVENITRYQQETKNWRDRKVVRKDIQNGDLVLR 1823
Query: 942 WRSGAP-GNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
+ P KL P WEGPY I+ +G+++L++L+GR ++N +LR FY
Sbjct: 1824 KKGDHPNAGKLQPKWEGPYTAIQAGRSGSFYLKDLEGRTSTHTWNVDNLRRFY 1876
>gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 986
Score = 394 bits (1012), Expect = e-108
Identities = 214/543 (39%), Positives = 309/543 (56%), Gaps = 15/543 (2%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEA++ GL+ A+ + +R LLIRTDS+LV V +F+ K+ + +YL
Sbjct: 447 ARLQFNTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEKGMKRYL 506
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSI---EGE 578
E VR + F + VE++PR +N ADAL K A+ P ++ + E L PS+ E
Sbjct: 507 EAVRSMEKCFTGITVEHLPRDQNDEADALVKSAACGGP-HSLGIFFEVLHAPSVPMDSSE 565
Query: 579 LMACVSR-----GRTWMDPIISILEGDPAEVEQC-TKEQQREASHYTLIDGHLYRRGFST 632
+M W P + LE V++ K Q A+ Y ++ G LYR G
Sbjct: 566 VMTIDQEKLGEDSYDWRTPFVKHLETGWLPVDEAEAKRLQLRATKYKMVSGQLYRSGVLQ 625
Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
PL+ C+ + E + E+H+G+C +H R++A KV R G YWPT+ K C++ +K+C+ C
Sbjct: 626 PLVCCISFAEGEEMAKEIHQGLCGAHQAARTMASKVFRQGLYWPTVMKVCVEQIKKCESC 685
Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
Q AP +L ++ WPFA WG+D++GPFP AR KF++VAV+YF++WIEAEPL
Sbjct: 686 QRHGRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPL 745
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
ITSA + F WK I+C FG+P+ ++DNG QF S + RE C+ + +++RFASV HPQ+
Sbjct: 746 GAITSAAVQKFVWKNIICHFGVPKEFITDNGKQFDSDKFREMCEALNLEIRFASVAHPQS 805
Query: 813 NGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
NG E N IL L++RL AKG W +EL +VLW+ TT T+ +PF + YG DAM
Sbjct: 806 NGAAERTNGKILEALKKRLEGAAKGKWPEELLSVLWALRTTPIRPTKFSPFMLLYGDDAM 865
Query: 872 LPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 931
+P E+ + R EE + V L+LL R EA +A +N +VR
Sbjct: 866 IPAELGANSPRVMFSGGEEGR---EVSLELLEAVRVEALEHMHKYATSTSATYNKKVRPT 922
Query: 932 EMQVGDLVLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLR 990
E+ G LVL+ ++ KL WEGPY I G++ L L+G S+N SL+
Sbjct: 923 ELMPGHLVLRKKANPLAVGKLESKWEGPYIIKHKSRTGSFRLATLEGEEFDHSWNAASLK 982
Query: 991 YFY 993
FY
Sbjct: 983 RFY 985
>gb|AAP44597.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34896552|ref|NP_909620.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1862
Score = 389 bits (998), Expect = e-106
Identities = 214/542 (39%), Positives = 309/542 (56%), Gaps = 14/542 (2%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEA++ GL+ A+ + +R LLIRTDS+LV V +F+ K+ + KYL
Sbjct: 1324 ARLQFDTTNNVAEYEAVLLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKKYL 1383
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE---GE 578
E VR + F + V+++PR +N+ ADALAK A+ P ++ + E L PS+ E
Sbjct: 1384 EAVRSMEKCFTGITVKHLPRDQNEEADALAKSAACGGP-HSPGIFFEVLHAPSVPMDCSE 1442
Query: 579 LMACVSRGR-----TWMDPIISILEGDPAEVEQC-TKEQQREASHYTLIDGHLYRRGFST 632
+MA R W P + LE V++ K Q A+ Y ++ G LYR G
Sbjct: 1443 VMAIDREKRGEDPHDWRTPFVKHLETGWLPVDEAEAKRLQLRATKYKMVSGQLYRTGVLQ 1502
Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
PLL+C+ E + E+H+G+C +H R++A KV R G YWPT+ K C++ +K+C+
Sbjct: 1503 PLLRCISFADGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLKVCVEQIKKCESS 1562
Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
Q + AP +L ++ WPFA WG+D++GPFP AR KF +VAV+YF++WIEAEPL
Sbjct: 1563 QRHSRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPL 1622
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
ITSA + F WK IVCRFG+P+ ++DNG QF + RE C+ + +++ FASV HPQ+
Sbjct: 1623 GAITSAAVQKFVWKNIVCRFGVPKEFITDNGKQFDFVKFREMCEGLNLEINFASVAHPQS 1682
Query: 813 NGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
NG E N IL L++RL AKG W +EL +VLW+ TT T+ +PF + YG +AM
Sbjct: 1683 NGAAERTNGKILEALKKRLEGAAKGKWPEELLSVLWALRTTPTRPTKFSPFMLLYGDEAM 1742
Query: 872 LPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 931
P E+ + R EE + L+LL R +A +A +N +VR
Sbjct: 1743 TPAELGAKSPRVMFSGGEEGS---ELSLELLEGVRVKALEHMHKYATSTSATYNKKVRPT 1799
Query: 932 EMQVGDLVLKWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRY 991
E G LVL+ ++ KL WEGPY I + G++ L L+G S+N SL+
Sbjct: 1800 EHIPGHLVLRKKANPVVGKLESKWEGPYLIKRKSRTGSFRLATLEGEEFDHSWNAASLKR 1859
Query: 992 FY 993
FY
Sbjct: 1860 FY 1861
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 385 bits (990), Expect = e-105
Identities = 214/536 (39%), Positives = 307/536 (56%), Gaps = 15/536 (2%)
Query: 469 TNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLM 528
TNN AEYEA++ GL+ A+ + R LLIRTDS+LV V +F+ K+ + +YLE VR +
Sbjct: 1190 TNNAAEYEAILLGLRKAKALGFRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAVRSME 1249
Query: 529 TLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSI---EGELMAC--V 583
F + VE++PR +N+ AD LAK A+ P ++ + E L PS+ E+MA V
Sbjct: 1250 KCFTGITVEHLPRGQNEEADTLAKSAAYGGP-HSPGIFFEVLHAPSVPTDSSEIMAIDQV 1308
Query: 584 SRGRT---WMDPIISILE-GDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVP 639
G W P + LE G E E K Q A+ Y ++ G LYR G PLL+ +
Sbjct: 1309 KLGEDPYDWRTPFVKHLETGWLPEDEAEAKRLQLRATKYKMVSGQLYRSGVLQPLLRYIS 1368
Query: 640 PEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLS 699
+ E + E+H+G+C +H R++A KV R YWPT+ K C++ +K+C+ CQ
Sbjct: 1369 FAEGEEMAKEIHQGLCGAHQAARTVASKVFRQEVYWPTVLKVCVEQIKKCESCQHHGRSQ 1428
Query: 700 KAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAK 759
AP +L ++ WPFA WG+D++GPFP AR KF++VAV+YF++WIEAEPL ITSA
Sbjct: 1429 TAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAITSAA 1488
Query: 760 IVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESA 819
+ F WK IVCRFG+P+ ++DNG QF S++ RE C+ + ++++F SV HPQ+NG E
Sbjct: 1489 VQKFVWKNIVCRFGVPKEFITDNGKQFDSNKFREMCEGLNLEIKFVSVAHPQSNGAAERT 1548
Query: 820 NRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDN 878
N IL L++RL AKG W +E+ +VLW+ T T+ +PF + YG +AM P E+
Sbjct: 1549 NGKILEALKKRLEGPAKGKWPEEMLSVLWALRTNPTRPTKFSPFMLLYGDEAMTPAELGT 1608
Query: 879 FTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDL 938
+ R EE + V L+LL R EA +A +N +VR E+ G L
Sbjct: 1609 NSPRVMFSGGEEGR---EVSLELLEGVRVEALEHMHKYATSTSATYNKKVRPTELMPGHL 1665
Query: 939 VLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
VL+ ++ KL WEGPY I G++ L L+G S+N SL FY
Sbjct: 1666 VLRKKANPIAVGKLESKWEGPYLIKHKSRTGSFRLATLEGDEFDHSWNAASLERFY 1721
>ref|XP_476165.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48843847|gb|AAT47106.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1136
Score = 384 bits (986), Expect = e-105
Identities = 213/544 (39%), Positives = 310/544 (56%), Gaps = 17/544 (3%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEA+ GL+ A+ + +R LLIR DS+LV V +F+ K+ + +YL
Sbjct: 597 ARLQFDTTNNAAEYEAVFLGLRKAKALGVRRLLIRIDSKLVAGHVDNSFEAKEEGMKRYL 656
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE---GE 578
E VR++ F + VE++PR++N+ ADALAK A+ P ++ + E L PS+ E
Sbjct: 657 EAVRFMEKYFTGITVEHLPRSQNEEADALAKSAACGGP-HSPGIFFEVLHAPSVSMDSSE 715
Query: 579 LMACVSRGR-----TWMDPIISILEGDPAEVEQC-TKEQQREASHYTLIDGHLYRRGFST 632
+MA W P + LE V++ K Q A+ Y ++ G LYR G
Sbjct: 716 VMAIDQEKLGEDPYDWRTPFVKHLETGWLPVDEAKAKRLQLRATKYKMVSGQLYRSGVLQ 775
Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
PLL C+ + E + E+H+G+C +H R++A KV R G YWPT+ K C++ +K+C+ C
Sbjct: 776 PLLCCISFAEGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLKVCVEQIKKCESC 835
Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
Q AP +L ++ WPFA WG+D++GPFP AR KF +VAV+YF++WIEAEPL
Sbjct: 836 QRHGRSQTAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFTIVAVEYFSRWIEAEPL 895
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
ITSA + F WK IVCRFG+P+ +++N QF S + RE C+ + +++RFASV HPQ+
Sbjct: 896 GAITSAAVQKFVWKNIVCRFGVPKEFITNNDKQFDSDKFREMCEGLNLEIRFASVAHPQS 955
Query: 813 NGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
NG + N IL L+++L AKG W +EL +VLW+ TT +T+ +PF + YG +AM
Sbjct: 956 NGAAKRTNGKILEALKKKLEGAAKGKWPEELLSVLWALRTTPTRSTKFSPFMLLYGDEAM 1015
Query: 872 LPVEID-NFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRV 930
P E+ N G EE + V L+LL R E +A +N +VR
Sbjct: 1016 TPAELGANSPSVIFSGGEEGRE----VSLELLEGVRVEVLEHMHKYATSTSATYNKKVRP 1071
Query: 931 REMQVGDLVLKWR-SGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSL 989
E+ G LVL+ + + KL WEGPY I G++ L L+G S+N SL
Sbjct: 1072 TELMPGYLVLRKKVNPVAVGKLESKWEGPYLIKHKSRTGSFRLATLEGEEFDYSWNAASL 1131
Query: 990 RYFY 993
+ FY
Sbjct: 1132 KRFY 1135
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 383 bits (984), Expect = e-104
Identities = 209/541 (38%), Positives = 316/541 (57%), Gaps = 12/541 (2%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEAL+ GL+ + + IR +++TDSQ+V + + + KDP L KYL
Sbjct: 779 AKLDFNCTNNIAEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAKDPKLEKYL 838
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMA 581
+ VR + F+ V+ +PR +N+ AD LAK A+ P + V ET+ PS+E A
Sbjct: 839 DMVRRIEASFEGFSVKNIPRGQNEHADLLAKSAAQGLPLPS-DVFFETIKAPSVELLERA 897
Query: 582 CVSRG----RTWMDPIISILEGD-PAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLK 636
++ W IIS L+G ++ E K + A Y +I+G LY+ G PLLK
Sbjct: 898 VLNISPVFSEDWRTEIISYLQGKFLSDDEAYNKRIEARARPYVMIEGELYKHGVCAPLLK 957
Query: 637 CVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFA 696
C+ + +M E+H G+C SHIG R L KV R GFYWP D + V++C+ CQ A
Sbjct: 958 CLSRTEGIELMKEIHAGLCGSHIGSRPLLGKVFRQGFYWPKAASDAAELVQKCEGCQKCA 1017
Query: 697 DLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKIT 756
K P + WP WG+DL+GP P A+ +++++VAV+YF+KWIEA+PLA IT
Sbjct: 1018 RDQKQPSSLTQLIQPTWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATIT 1077
Query: 757 SAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQV 816
SA + F+W+ IVCRFG+P+AI DNGTQF S R+FC ++G ++ FASV HP++NG V
Sbjct: 1078 SATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLV 1137
Query: 817 ESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVE 875
E AN +I+ G+ + + + +G W D+L V+WS+NTT +T TPF++ +G +A+ P +
Sbjct: 1138 ERANGIIMTGIMKLIFNQPRGKWPDQLIKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEK 1197
Query: 876 IDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSR-VRVREMQ 934
+ R E +++A ++E D L R +A + Q K+ R VR++ ++
Sbjct: 1198 AKAGSIRIVASAESDSEAAYSIEKDALEGIRLQA-VENINKYQAETVKWRDRKVRLKNIE 1256
Query: 935 VGDLVLKWRSGAPG--NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYF 992
G LVL+ R P KL W+GP+ + G+Y L++++G +PRS+N LR +
Sbjct: 1257 PGHLVLR-RVANPETVGKLQLKWDGPFLVASSSRPGSYRLKDMNGSDIPRSWNADELRRY 1315
Query: 993 Y 993
Y
Sbjct: 1316 Y 1316
>gb|AAT93843.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1723
Score = 382 bits (982), Expect = e-104
Identities = 205/553 (37%), Positives = 317/553 (57%), Gaps = 28/553 (5%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AG++ + ++ L+++ DS+LV NQV ++ P L YL VR
Sbjct: 1172 RATNNTAEYEGLLAGIRATVALGVKRLIVKGDSELVANQVHKDYKCSSPKLSNYLAEVRK 1231
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSI------EGELM 580
L F + V +V R ++ D LA+ AS R+P + + + L PS+ + +
Sbjct: 1232 LEKRFDGIEVRHVYRKDDIEPDDLARRASRREPLEPGTFL-DILTKPSVKEANDKDSPVT 1290
Query: 581 ACVSRGRT--------------WMDPIISILEGDPAEVEQCTKEQ-QREASHYTLIDGHL 625
+S G T W P I + D + E+ R+A Y +I L
Sbjct: 1291 PDISSGATEAECAVADIETTDDWRTPHIKFISSDELPEDDAEAEKITRQAKIYCMIGNDL 1350
Query: 626 YRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDF 685
Y++ + LLKCV + + ++ ++HEGVC S GR+L K R F+WPT KD D
Sbjct: 1351 YKKAPNGVLLKCVSSDDGKHLLVDIHEGVCGSDAAGRTLVGKAFRQEFFWPTALKDTCDM 1410
Query: 686 VKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTK 745
V++C+ CQ + +K P + L T+ WPF+ WG+D++GPFP + KF+ VA+D FTK
Sbjct: 1411 VQRCEACQFHSKHTKLPAQALQTIPLTWPFSCWGLDILGPFPRGQGDYKFLFVAIDKFTK 1470
Query: 746 WIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFA 805
WIEA P+ +I + + F +RI CR+G+P I++DN +QF SS ++C E+G+++ FA
Sbjct: 1471 WIEATPMGEIKADNAIKFI-RRIFCRYGLPHRIITDNDSQFISSDFHDYCIELGVKICFA 1529
Query: 806 SVEHPQTNGQVESANRVILRGLRR----RLAEAKGAWLDELPAVLWSYNTTEQSTTRETP 861
SV HPQ+NGQVE AN ++L+G++ RL W++ELP+VLW+ TT ++ +ETP
Sbjct: 1530 SVSHPQSNGQVERANSIVLQGIKTRVYDRLMSHDKKWVEELPSVLWAVRTTPTTSNKETP 1589
Query: 862 FRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVA 921
F + YG +AMLP E+ + + R + +E+ + +++LL E R+ +R + +Q +
Sbjct: 1590 FFLVYGSEAMLPTELRHQSTRVQKYSDEDQEEQRNDDVNLLEEHRERVAVRAASYQQALR 1649
Query: 922 AKFNSRVRVREMQVGDLVL-KWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRL 980
R+R R + +GD VL + +S A NKL+P WEGPY I +VL GA+ + DGR L
Sbjct: 1650 RYHEKRIRARTLSIGDYVLRRVQSQAGRNKLSPKWEGPYMITQVLRPGAFKIANGDGREL 1709
Query: 981 PRSFNGLSLRYFY 993
S+N LR FY
Sbjct: 1710 ANSWNIDQLRKFY 1722
>gb|AAP53022.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532866|ref|NP_920735.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22655740|gb|AAN04157.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905207|gb|AAL31077.1| putative polyprotein [Oryza
sativa]
Length = 1265
Score = 375 bits (964), Expect = e-102
Identities = 211/543 (38%), Positives = 303/543 (54%), Gaps = 15/543 (2%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEA++ GL+ A+ + +R LLIRTDS+LV V +F+ K+ + +YL
Sbjct: 726 ARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEKGMKRYL 785
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSI---EGE 578
E VR + F + VE++PR +N+ ADAL K A+ P ++ + E L PS+ E
Sbjct: 786 EAVRSMEKCFTGITVEHLPRDQNEEADALTKSAACGGP-HSPGIFFEVLHAPSVPMDSSE 844
Query: 579 LMACVSRGR-----TWMDPIISILEGDPAEVEQC-TKEQQREASHYTLIDGHLYRRGFST 632
+MA W P LE V++ K Q A Y ++ G LY G
Sbjct: 845 VMAIDQEKLGEDPCDWRTPFAKHLETSWLPVDEAEAKRLQLRAMKYKMVSGQLYCSGVLQ 904
Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
PL +C+ + E + +E+H+G+C +H R++A KV R G YWPT+ K C+ +K+C+ C
Sbjct: 905 PLFRCISFAEGEEMANEIHQGLCGAHQATRTVASKVFRQGVYWPTVLKVCVKQIKKCESC 964
Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
Q AP +L ++ WPFA WG+D++ PFP AR KF +VA++YF++WIEAEPL
Sbjct: 965 QHHGRSQAAPQYDLQPIAPIWPFARWGLDIIEPFPVARNGYKFAIVAMEYFSRWIEAEPL 1024
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
ITSA + F WK IVCRF +P+ ++DNG QF S ++RE C+ + +++RFASV HPQ+
Sbjct: 1025 GAITSAIVQKFVWKNIVCRFRVPKEFITDNGKQFDSDKSREMCEGLNLEIRFASVAHPQS 1084
Query: 813 NGQVESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
NG E N IL L++RL AKG W +EL +VLW+ TT T+ +PF + YG +AM
Sbjct: 1085 NGAAERTNGKILEALKKRLEGAAKGKWPEELLSVLWALRTTPTRPTKFSPFMLLYGDEAM 1144
Query: 872 LPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 931
P E+ + R EE + V L LL R EA +A +N +VR
Sbjct: 1145 TPAELGANSPRVMFSGGEEGR---EVSLKLLEGVRVEALEHMHKYATSTSATYNKKVRPM 1201
Query: 932 EMQVGDLVLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLR 990
E+ G LVL+ ++ L WEGPY I G++ L L G S+N SL+
Sbjct: 1202 ELMPGHLVLRKKANPVAVGMLESKWEGPYLIKHKSRTGSFCLTTLKGEEFDHSWNATSLK 1261
Query: 991 YFY 993
FY
Sbjct: 1262 RFY 1264
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 375 bits (963), Expect = e-102
Identities = 205/541 (37%), Positives = 311/541 (56%), Gaps = 12/541 (2%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEAL+ GL+ + + IR +++TDSQ+V + + + KDP L KYL
Sbjct: 779 AKLDFSCTNNIAEYEALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKSCKAKDPKLEKYL 838
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMA 581
+ VR + F+ V+ +PR +N+ AD LAK A+ P + V ET+ PS+E A
Sbjct: 839 DMVRRVEASFEGFSVKNIPRGQNEHADLLAKSAAQGLPLPS-DVFFETIKAPSVELLERA 897
Query: 582 CVS----RGRTWMDPIISILEGD-PAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLK 636
++ W IIS L+G ++ E + + A Y +I+G LY+ G PLLK
Sbjct: 898 VLNISPVYSEDWRTEIISYLQGKFLSDDEAYNRRIEARARPYVMIEGELYKHGVCAPLLK 957
Query: 637 CVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFA 696
C+ + +M E+H G+C SHIG R L K+ R GFYWP D + V++C+ CQ A
Sbjct: 958 CLSRTEGIELMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAASDAAELVQKCEGCQKCA 1017
Query: 697 DLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKIT 756
K P + WP WG+DL+GP P A+ +++++VAV+YF+KWIEA+PLA IT
Sbjct: 1018 RDQKQPSSLTQLIQPIWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATIT 1077
Query: 757 SAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQV 816
SA + F+W+ IVCRFG+P+AI DNGTQF S R+FC ++G ++ FASV HP++NG V
Sbjct: 1078 SATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLV 1137
Query: 817 ESANRVILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVE 875
E AN +I+ G+ + + + +G W D+L V+WS+NTT +T TPF++ +G +A+ P E
Sbjct: 1138 ERANGIIMTGIMKSIFNQPRGKWPDQLTKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEE 1197
Query: 876 IDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSR-VRVREMQ 934
+ R ++A+ +VE D L R +A + Q K+ R VR++ ++
Sbjct: 1198 AKTGSIRVVASAASGSEADYSVEKDALEGIRLQA-VENINKYQAETIKWRDRKVRLKNIE 1256
Query: 935 VGDLVLKWRSGAPG--NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYF 992
+ R P KL W+GP+ + G+Y L+++DG +PRS+N LR +
Sbjct: 1257 PDTWCFR-RVANPETVGKLQLKWDGPFLVASSSRPGSYRLKDMDGNDIPRSWNADELRRY 1315
Query: 993 Y 993
Y
Sbjct: 1316 Y 1316
>emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultivar-group)]
gi|50921873|ref|XP_471297.1| OSJNBa0061A09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 2030
Score = 373 bits (958), Expect = e-101
Identities = 215/556 (38%), Positives = 311/556 (55%), Gaps = 30/556 (5%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AGL++A + IR LL+ DSQLV NQV ++ DP + Y+ +VR
Sbjct: 1475 RATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRR 1534
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRK---PGNNKSVIQETLAYPSIEGE----- 578
+ F + + +VPR +N AD L++LAS+R PG + + + A P GE
Sbjct: 1535 MERHFDGIELRHVPRRDNMMADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPD 1594
Query: 579 -------LMACVSRGR--------TWMDPIISILEGDPAEVEQCTKEQQREAS-HYTLID 622
+ A +G TW+ I + L ++ E+ R S Y L++
Sbjct: 1595 RPPRPVGVQASGPKGSAPSSLRLITWIAEIQAYLTDKTLPEDREGSERVRRISKRYVLVE 1654
Query: 623 GHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDC 682
G LYRR + LLKC+P E+ +++++HEG C +H R+L K R GFYWPT D
Sbjct: 1655 GTLYRRAANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDA 1714
Query: 683 MDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDY 742
+D V++C+ CQ A P + L T+ WPFA+WG+D++GPF A +++ VA+D
Sbjct: 1715 VDLVRRCRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDK 1774
Query: 743 FTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQM 802
FTKW EA P+ KI + F K I RFG+P I++DNGTQF+S ++C++MGI++
Sbjct: 1775 FTKWPEAYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKL 1833
Query: 803 RFASVEHPQTNGQVESANRVILRGLRRR----LAEAKGAWLDELPAVLWSYNTTEQSTTR 858
FAS HP++NGQVE AN IL+GL+ + L + +W++ELPAVLW+ TT T
Sbjct: 1834 CFASPAHPESNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1893
Query: 859 ETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ 918
ETPF + YG +A+LP E+ + R E + +LD L E R A +R +Q
Sbjct: 1894 ETPFFLVYGAEAVLPSELTLKSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1953
Query: 919 RVAAKFNSRVRVREMQVGDLVLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDG 977
+ VR R + V DLVL+ G +KL+P WEGPYR++ V G+ L+ DG
Sbjct: 1954 SLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSPMWEGPYRVVGVPRPGSIRLDTGDG 2013
Query: 978 RRLPRSFNGLSLRYFY 993
LP +N LR FY
Sbjct: 2014 TELPNPWNIEHLRRFY 2029
>gb|AAP05806.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|50399970|gb|AAT76358.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 964
Score = 373 bits (957), Expect = e-101
Identities = 198/553 (35%), Positives = 320/553 (57%), Gaps = 28/553 (5%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AG++ A + + L+++ DS+L+ NQV ++ +P L KYL VR
Sbjct: 413 RATNNTAEYEGLLAGIRAAAALGAKRLIVKGDSELIANQVHKDYKCTNPELSKYLAEVRK 472
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE---GEL---- 579
L F + V +V R +N D LA+ AS R+P + + + L PS++ GE+
Sbjct: 473 LEKRFDGIEVRHVYRKDNIEPDDLARRASRREPLEPGTFL-DVLTKPSVKEVSGEVGPST 531
Query: 580 -------------MACVSRGRTWMDPIISILEGDPAEVEQCTKEQ-QREASHYTLIDGHL 625
+A + W P+I + + + E+ R+A Y ++ L
Sbjct: 532 PDISLEVTEAERAVADIETTDDWRIPLIKFISSEELPEDDTEAEKITRKAKIYCMVGNDL 591
Query: 626 YRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDF 685
Y++ + LLKCV + ++ ++HEG+C SH GR+L K R GF+WPT KD D
Sbjct: 592 YKKAPNGILLKCVSTDDGRQLLLDIHEGICGSHAAGRTLVGKAFRQGFFWPTDLKDACDI 651
Query: 686 VKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTK 745
V++C+ CQ + +K P + L T+ WPF+ WG+D++GPFP + +F+ VA+D FTK
Sbjct: 652 VQRCEACQFHSKHTKLPAQALQTIPLTWPFSCWGLDILGPFPRGQGGYRFLFVAIDKFTK 711
Query: 746 WIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFA 805
WIEA P +I + + F + I+CR+G+P I+++NG QF S+ +++C +G+++ FA
Sbjct: 712 WIEAVPTGEIKADNAIKFI-RGILCRYGLPHRIITNNGPQFISADFQDYCIGLGVKICFA 770
Query: 806 SVEHPQTNGQVESANRVILRGLRR----RLAEAKGAWLDELPAVLWSYNTTEQSTTRETP 861
SV HPQ+NGQVE AN ++L+G++ RL W++ELP+VLW+ +TT ++ +ETP
Sbjct: 771 SVSHPQSNGQVERANGIVLQGIKTRVYDRLMSHDKKWVEELPSVLWAMHTTLTTSNKETP 830
Query: 862 FRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVA 921
F + YG +AM P E+ + + R + +E + ++++LL E R+ +R + +Q +
Sbjct: 831 FFLVYGSEAMFPGELRHQSTRVQKHSDENQEKQRDIDVNLLEEHRERVAVRAASYQQALR 890
Query: 922 AKFNSRVRVREMQVGDLVL-KWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRL 980
R+R + +GD VL + ++ A NKL+P WEGPY I +VL GA+ + + D R L
Sbjct: 891 RYHEKRIRACILSIGDYVLRRVQTQAGQNKLSPKWEGPYTITQVLRPGAFKIADGDDREL 950
Query: 981 PRSFNGLSLRYFY 993
S+N LR FY
Sbjct: 951 ANSWNIDQLRKFY 963
>ref|XP_471225.1| OSJNBb0016B03.14 [Oryza sativa (japonica cultivar-group)]
gi|38347558|emb|CAD39384.2| OSJNBb0016B03.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1323
Score = 372 bits (954), Expect = e-101
Identities = 205/504 (40%), Positives = 296/504 (58%), Gaps = 23/504 (4%)
Query: 462 AMVAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYL 521
A + TNN AEYEA++ GL+ A+ + +R LLIRTDS+LV V +F+ K+ + +YL
Sbjct: 833 ARLQFNTTNNAAEYEAILLGLRRAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYL 892
Query: 522 ERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMA 581
E VR F + VE++PR +N+ ADALAK A+ P ++ + E L PS+ + +
Sbjct: 893 EAVRSTEKCFTGITVEHLPRGQNEEADALAKSAACGGP-HSPGIFFEVLHAPSVPMDSLE 951
Query: 582 CVSRGRTWMDPIISILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPE 641
++ I L D AE K Q A+ Y ++ G LYR G PLL+C+
Sbjct: 952 IMA---------IDQLPEDEAEA----KRLQLGATKYKMVSGQLYRSGVLQPLLRCISFA 998
Query: 642 KYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKA 701
+ + + E+H+G+C H R++A KV R G YWPT+ K C++ +K+C+ CQ A
Sbjct: 999 EGKEMAKEIHQGLCGVHQAARTVASKVFRQGVYWPTVLKVCVEQIKKCESCQRHGRSQTA 1058
Query: 702 PPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIV 761
P +L ++ W FA WG+D++GPFP AR KF +VAV+YF++WIEAEPL ITSA +
Sbjct: 1059 PQYDLQPIAPVWLFASWGLDIIGPFPVARNGYKFTIVAVEYFSRWIEAEPLGAITSATVQ 1118
Query: 762 NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANR 821
F WK IVCRFG+P+ ++DNG QF S + RE C+ + +++RFASV HPQ+NG E N
Sbjct: 1119 KFVWKNIVCRFGVPKEFITDNGKQFDSDKFREMCEGLNLEIRFASVAHPQSNGAAERTNG 1178
Query: 822 VILRGLRRRL-AEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFT 880
IL L++RL AKG W +E+ +VLW+ TT T+ +PF + YG +AM P E+ +
Sbjct: 1179 KILEALKKRLEGAAKGKWPEEMLSVLWALRTTPTRPTKFSPFMLFYGDEAMTPAELGANS 1238
Query: 881 WRTRPGFEEENQANMAVELDLLSETRDEA--HIRETAMKQRVAAKFNSRVRVREMQVGDL 938
R EE + V L+LL R EA H+R+ A +A +N +VR E+ G L
Sbjct: 1239 PRVMFSRREEGR---EVSLELLEGVRVEALEHMRKYATS--TSATYNKKVRPTELMPGHL 1293
Query: 939 VLKWRSGAPG-NKLTPNWEGPYRI 961
VL+ ++ KL WEGPY I
Sbjct: 1294 VLRNKANPIAVGKLESKWEGPYLI 1317
>gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1869
Score = 372 bits (954), Expect = e-101
Identities = 208/532 (39%), Positives = 305/532 (57%), Gaps = 16/532 (3%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AGL++A + IR LL+ DSQLV NQV ++ DP + Y+ +VR
Sbjct: 1348 RATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRR 1407
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSRG 586
+ F + + +VPR +N AD L++LAS+R +E LA PS L+A ++
Sbjct: 1408 MERHFDGIELRHVPRRDNMMADELSRLASSRAQ-TPPGAFEERLAQPSA---LIAWIAEI 1463
Query: 587 RTWMDPIISILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAI 646
+ ++ + E + ++ R + Y L++G LYRR + LLKC+P E+ +
Sbjct: 1464 QAYLT------DKTLPEDREGSERVHRISKRYVLVEGTLYRRAANGILLKCIPREQGVVL 1517
Query: 647 MSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKEL 706
++++HEG C +H R+L K R GFYWPT D +D V++C+ CQ A P + L
Sbjct: 1518 LADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQAL 1577
Query: 707 VTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWK 766
T+ WPFA+WG+ ++GPF A +++ VA+D FTKW EA P+ KI + F K
Sbjct: 1578 QTIPLSWPFAVWGLHILGPFRRAPGGFEYLYVAIDKFTKWPEAYPVVKIDKHSALKFI-K 1636
Query: 767 RIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRG 826
I RFG+P I++DNGTQF+S ++C++MGI++ FAS HP++NGQVE AN IL+G
Sbjct: 1637 GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKG 1696
Query: 827 LRRR----LAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWR 882
L+ + L + +W++ELPAVLW+ TT T ETPF + YG +A+LP E+ + R
Sbjct: 1697 LKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLKSPR 1756
Query: 883 TRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKW 942
E + +LD L E R A +R +Q + VR R + V DLVL+
Sbjct: 1757 ATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQCHVRARSLCVDDLVLRR 1816
Query: 943 RSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
G +KL+P WEGPYR++ V G+ L DG LP +N LR FY
Sbjct: 1817 VQTRAGLSKLSPMWEGPYRVVGVPRPGSIRLATGDGTELPNPWNIEHLRRFY 1868
>gb|AAU90124.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1796
Score = 372 bits (954), Expect = e-101
Identities = 218/556 (39%), Positives = 312/556 (55%), Gaps = 30/556 (5%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AGL++A + IR LL+ DSQLV NQV+ +Q DP + Y+ +VR
Sbjct: 1241 RATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVRKEYQCSDPQMDAYVRQVRR 1300
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRK---PGNNKSVIQETLAYPSIEGE----- 578
+ F + + +VPR +N AD L++LAS+R PG + + + A P GE
Sbjct: 1301 MERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPE 1360
Query: 579 -------LMACVSRGRTWMDP-IISILEGDPAEVEQCTKEQQREASH--------YTLID 622
+ A G P +I+ + A + T + RE S Y L++
Sbjct: 1361 RPPRPVGVQASGPEGSAPSSPRLIAWITEIQAYLANKTLPEDREGSERVRRIFKRYVLVE 1420
Query: 623 GHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDC 682
G LYRR + LLKC+P E+ ++++VHEG C +H R+L K R GFYWPT D
Sbjct: 1421 GTLYRRAANGVLLKCIPREQGVELLADVHEGECGAHSASRTLVGKAFRQGFYWPTALNDA 1480
Query: 683 MDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDY 742
+D V++C+ CQ A + P + L T+ WPFA+WG+D++GPF A +++ VAVD
Sbjct: 1481 VDLVRRCRACQFHARQTHQPAQALQTIPLSWPFAVWGLDILGPFRWAPGGFEYLYVAVDK 1540
Query: 743 FTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQM 802
FTKW EA P+ KI + F + I RFG+P I++DNGTQF+S ++C++MGI++
Sbjct: 1541 FTKWPEAYPVIKIDKHSALKFI-RGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKL 1599
Query: 803 RFASVEHPQTNGQVESANRVILRGLRRR----LAEAKGAWLDELPAVLWSYNTTEQSTTR 858
FAS +P++NGQVE AN IL+GL+ + L + +W++ELPAVLW+ TT T
Sbjct: 1600 CFASPAYPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1659
Query: 859 ETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ 918
ETPF + YGV+A+LP E+ + R E + +LD L E R A +R +Q
Sbjct: 1660 ETPFFLVYGVEAVLPSELTLRSPRVTMYCEADQDQLRRDDLDYLEEQRRRAALRAARYQQ 1719
Query: 919 RVAAKFNSRVRVREMQVGDLVLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELDG 977
+ VR R + V DLVL+ G +KL+P WEGPYR+I V G+ L DG
Sbjct: 1720 SLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDG 1779
Query: 978 RRLPRSFNGLSLRYFY 993
LP +N LR FY
Sbjct: 1780 TELPNPWNIEHLRRFY 1795
>gb|AAO66539.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|50920193|ref|XP_470457.1|
putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 370 bits (951), Expect = e-100
Identities = 217/557 (38%), Positives = 308/557 (54%), Gaps = 32/557 (5%)
Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
+ATNN AEYE L+AGL++A + IR LL+ DSQLV NQV ++ DP + Y+ +VR
Sbjct: 1472 RATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRR 1531
Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRK---PGNNKSVIQETLAYPSIEGELMACV 583
+ F + + +VPR +N AD L++LAS+R PG + + + A P GE A
Sbjct: 1532 MERHFDGIELRHVPRRDNMIADELSRLASSRAQTPPGAFEERLTQPSARPDPLGETDAPD 1591
Query: 584 SRGR--------------------TWMDPIISILEGDPAEVEQC--TKEQQREASHYTLI 621
R W+ I + L D E C ++ QR + Y L+
Sbjct: 1592 RPPRPVGVQASGPEGSAPSSLRLIAWISEIQTYLT-DKTLPEDCEGSERVQRISKRYVLV 1650
Query: 622 DGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKD 681
+G LYRR + LLKC+P E+ +++++HEG C +H R+L K R GFYWPT D
Sbjct: 1651 EGTLYRRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALND 1710
Query: 682 CMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVD 741
+D V++C+ CQ A P + L + WPFA+WG+D++GPF A +++ VAVD
Sbjct: 1711 AVDLVRRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAVD 1770
Query: 742 YFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQ 801
FTKW EA P+ KI + F K I RFG+P I++DNGTQF+S ++C++MGI+
Sbjct: 1771 KFTKWPEAYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIK 1829
Query: 802 MRFASVEHPQTNGQVESANRVILRGLRRR----LAEAKGAWLDELPAVLWSYNTTEQSTT 857
+ FAS HP++NGQVE AN IL+GL+ + L + +W++ELPAVLW+ TT T
Sbjct: 1830 LCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRAT 1889
Query: 858 RETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMK 917
ETPF + YG +A+LP E+ + R E + +LD L E R A +R +
Sbjct: 1890 GETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQ 1949
Query: 918 QRVAAKFNSRVRVREMQVGDLVLKWRSGAPG-NKLTPNWEGPYRIIKVLGNGAYHLEELD 976
Q + VR R + V DLVL+ G +KL+P WEGPYR+I V G+ L D
Sbjct: 1950 QSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGD 2009
Query: 977 GRRLPRSFNGLSLRYFY 993
G LP +N LR FY
Sbjct: 2010 GTELPNPWNIEHLRRFY 2026
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.336 0.143 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,545,947,482
Number of Sequences: 2540612
Number of extensions: 60831379
Number of successful extensions: 230682
Number of sequences better than 10.0: 4461
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 1239
Number of HSP's that attempted gapping in prelim test: 220216
Number of HSP's gapped (non-prelim): 6254
length of query: 993
length of database: 863,360,394
effective HSP length: 138
effective length of query: 855
effective length of database: 512,755,938
effective search space: 438406326990
effective search space used: 438406326990
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0590c.10