BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590a.3
(270 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD27877.1| LHCII type III chlorophyll a/b binding protein [V... 517 e-145
emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum] ... 502 e-141
gb|AAF20948.1| chlorophyll a/b-binding protein [Daucus carota] 501 e-141
gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein ... 499 e-140
emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] gi|1157... 498 e-140
dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidops... 497 e-139
emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vu... 474 e-132
ref|XP_478729.1| putative chlorophyll A-B binding protein of LHC... 472 e-132
emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [... 441 e-122
emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein ... 439 e-122
gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nico... 405 e-112
emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein... 384 e-105
sp|P14278|CB24_LYCES Chlorophyll a-b binding protein 4, chloropl... 369 e-101
emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypo... 367 e-100
dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein... 367 e-100
gb|AAC34983.1| light harvesting chlorophyll A/B binding protein ... 366 e-100
gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum] 365 e-100
emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabac... 365 e-100
emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybri... 364 1e-99
emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris s... 364 1e-99
>gb|AAD27877.1| LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 517 bits (1331), Expect = e-145
Identities = 250/270 (92%), Positives = 260/270 (95%), Gaps = 1/270 (0%)
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MAATLMAAT+ S GTV+KP+PFLGQ K SN N LRDVVSMG+GKY+M N+LWYGPDRVKY
Sbjct: 1 MAATLMAATSGS-GTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKY 59
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV
Sbjct: 60 LGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 119
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
LEKW+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRI
Sbjct: 120 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 179
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
NGL GVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 180 NGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 239
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPGS 270
KGPLENLLDHLD+PVANNAWVYATKF PGS
Sbjct: 240 KGPLENLLDHLDNPVANNAWVYATKFAPGS 269
>emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|479406|pir||S33775 chlorophyll a/b-binding protein -
garden pea
Length = 265
Score = 502 bits (1293), Expect = e-141
Identities = 241/265 (90%), Positives = 254/265 (94%), Gaps = 2/265 (0%)
Query: 6 MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFS 65
+ A TASS TV+K +PFLGQ K ++N LRDVV+MGT K+TMGNDLWYGPDRVKYLGPFS
Sbjct: 3 LMAATASSATVVKQTPFLGQRK--SANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFS 60
Query: 66 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL+KWV
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ++LMGLVEGFRINGLP
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPD 180
Query: 186 VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
VGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPGS 270
NLLDHLD+PVANNAWVYATKFVPG+
Sbjct: 241 NLLDHLDNPVANNAWVYATKFVPGA 265
>gb|AAF20948.1| chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 501 bits (1291), Expect = e-141
Identities = 239/263 (90%), Positives = 251/263 (94%)
Query: 8 ATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQ 67
A ASS TV++ +PFLG TK +N+N LRDVVSMG GK+TMG+DLWYGPDRVKYLGPFSAQ
Sbjct: 2 AMAASSSTVVRATPFLGLTKATNANPLRDVVSMGPGKFTMGSDLWYGPDRVKYLGPFSAQ 61
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWV+V
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 121
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
DFKEPVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGLPGVG
Sbjct: 122 DFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLPGVG 181
Query: 188 EGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
EGN+LYPGGQYFDPLGLADDP T AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 182 EGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
Query: 248 LDHLDDPVANNAWVYATKFVPGS 270
LDHLD+PVANNAWVYATKFVPGS
Sbjct: 242 LDHLDNPVANNAWVYATKFVPGS 264
>gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 499 bits (1286), Expect = e-140
Identities = 240/261 (91%), Positives = 252/261 (95%), Gaps = 2/261 (0%)
Query: 10 TASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTP 69
TASS TV+K +PFLGQ K ++N LRDVV+MGT K+TMGNDLWYGPDRVKYLGPFSAQTP
Sbjct: 7 TASSATVVKQTPFLGQRK--SANPLRDVVAMGTPKFTMGNDLWYGPDRVKYLGPFSAQTP 64
Query: 70 SYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDF 129
SYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL+KWVRVDF
Sbjct: 65 SYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDF 124
Query: 130 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEG 189
KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ++LMGLVEGFRINGLP VGEG
Sbjct: 125 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEG 184
Query: 190 NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 249
N+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD
Sbjct: 185 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 244
Query: 250 HLDDPVANNAWVYATKFVPGS 270
HLD+PVANNAWVYATKFVPG+
Sbjct: 245 HLDNPVANNAWVYATKFVPGA 265
>emb|CAA42818.1| LHCII type III [Lycopersicon esculentum]
gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding
protein 13, chloroplast precursor (LHCII type III
CAB-13)
Length = 265
Score = 498 bits (1281), Expect = e-140
Identities = 239/263 (90%), Positives = 252/263 (94%), Gaps = 2/263 (0%)
Query: 8 ATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQ 67
A TASS TV+K +PFLGQTK N+N LRDVV+MG+ ++TM NDLWYGPDRVKYLGPFSAQ
Sbjct: 5 AATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQ 62
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI PEVLEKWV+V
Sbjct: 63 TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKV 122
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
DFKEPVWFKAGSQIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPGVG
Sbjct: 123 DFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 182
Query: 188 EGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
EGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 248 LDHLDDPVANNAWVYATKFVPGS 270
LDHLD+PVANNAWVYATKFVPG+
Sbjct: 243 LDHLDNPVANNAWVYATKFVPGA 265
>dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|4741952|gb|AAD28773.1| Lhcb3 protein [Arabidopsis
thaliana] gi|13605754|gb|AAK32870.1| AT5g54270/MDK4_9
[Arabidopsis thaliana] gi|15239602|ref|NP_200238.1|
chlorophyll A-B binding protein / LHCII type III (LHCB3)
[Arabidopsis thaliana] gi|16323262|gb|AAL15365.1|
AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1| AT5g54270/MDK4_9 [Arabidopsis
thaliana] gi|5002210|gb|AAD37362.1| type III chlorophyll
a/b binding protein [Arabidopsis thaliana]
gi|25299027|pir||T52318 chlorophyll a/b-binding protein
type III [imported] - Arabidopsis thaliana
Length = 265
Score = 497 bits (1280), Expect = e-139
Identities = 237/265 (89%), Positives = 250/265 (93%)
Query: 6 MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFS 65
MA+T SS +V+ P+ FLGQTK S+ N LRDVVS+G+ KYTMGNDLWYGPDRVKYLGPFS
Sbjct: 1 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 66 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KWV
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 186 VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
VGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPGS 270
NLLDHLD+PVANNAW +ATKF PG+
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265
>emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
gi|115793|sp|P27523|CB23_HORVU Chlorophyll a-b binding
protein of LHCII type III, chloroplast precursor (CAB)
Length = 268
Score = 474 bits (1219), Expect = e-132
Identities = 229/271 (84%), Positives = 248/271 (91%), Gaps = 4/271 (1%)
Query: 1 MAATLMAATTASSGTVIKPSPFL-GQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
MA+T+MAA +S V+ +PFL GQ + ++++ LRD+ + G+ TMGNDLWYGPDRVK
Sbjct: 1 MASTIMAA---ASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVK 57
Query: 60 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
YLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+ PE
Sbjct: 58 YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPE 117
Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
VL+KWV V+FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR
Sbjct: 118 VLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177
Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
INGL GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 INGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPGS 270
GKGPLENL DHLDDPVANNAWV+ATKF PGS
Sbjct: 238 GKGPLENLFDHLDDPVANNAWVFATKFAPGS 268
>ref|XP_478729.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa (japonica
cultivar-group)] gi|51978994|ref|XP_507374.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51978992|ref|XP_507373.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51978990|ref|XP_507372.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51978988|ref|XP_507371.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51978986|ref|XP_507370.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51978984|ref|XP_507369.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|51963478|ref|XP_506410.1| PREDICTED
P0406F06.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|34393384|dbj|BAC83393.1| putative
chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa (japonica
cultivar-group)]
Length = 266
Score = 472 bits (1214), Expect = e-132
Identities = 228/270 (84%), Positives = 246/270 (90%), Gaps = 4/270 (1%)
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MA+T+MA T S + +PFLG + SN+ +RD+ + TG+ TM +LWYGPDRVKY
Sbjct: 1 MASTIMAPT---SRVLAAKTPFLGHPRPSNA-PVRDIAAAATGRITMSKELWYGPDRVKY 56
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEV
Sbjct: 57 LGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 116
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
LEKWVRVDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RI
Sbjct: 117 LEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI 176
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
NGLPGVG+GN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 177 NGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPGS 270
KGPLENLLDHL DPVANNAWVYATKF PGS
Sbjct: 237 KGPLENLLDHLADPVANNAWVYATKFTPGS 266
>emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 441 bits (1133), Expect = e-122
Identities = 208/221 (94%), Positives = 215/221 (97%)
Query: 50 DLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAM 109
DLWYGPDRVKYLGPFS QTPSYLTGEFPG+YGWDTAGLSADPEAFAKNRALEVIHGRWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 110 LGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 169
LGA GCITPEVL+KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 120
Query: 170 LLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSM 229
+LMGLVEG RINGL GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 121 ILMGLVEGLRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 180
Query: 230 FGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 270
FGFFVQAIVTGKGPLENLLDHLD+PVANNAW +ATKFVPG+
Sbjct: 181 FGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFVPGA 221
>emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
gi|7443222|pir||T08091 chlorophyll A/b-binding protein
type III Lhcb3.2 precursor - rape
Length = 267
Score = 439 bits (1130), Expect = e-122
Identities = 218/265 (82%), Positives = 233/265 (87%), Gaps = 2/265 (0%)
Query: 6 MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFS 65
MA+T +S +V P+ FLGQTK S+ N LRDVVS+G+ KY MGN LWYGPDRVKYLGPFS
Sbjct: 1 MASTFTNSSSVFCPTTFLGQTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFS 60
Query: 66 AQTPSYLTGEFPGDYGWDTAGLSADPE-AFAKNRALEVIHGRWAMLGALGCITPEVLEKW 124
QTPSY TGEFPGDYGWDTAGLSADPE AFAKN ALEVI+GRWAMLGA GCITPEVL+KW
Sbjct: 61 VQTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKW 120
Query: 125 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLP 184
VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 121 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRFD 180
Query: 185 GVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 244
GVGEGN+LYPGG+YFD L L DD TF ELKVKEIKNG LAMFSMFGFFVQAIVTGK PL
Sbjct: 181 GVGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPL 240
Query: 245 ENLLDHLDDPVAN-NAWVYATKFVP 268
E+LLDHLD+ VAN NAW + TKFVP
Sbjct: 241 ESLLDHLDNFVANINAWAFTTKFVP 265
>gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 405 bits (1041), Expect = e-112
Identities = 193/199 (96%), Positives = 198/199 (98%)
Query: 72 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKE 131
LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV+VDFKE
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 132 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN 191
PVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPGVGEGNN
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 121 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 180
Query: 252 DDPVANNAWVYATKFVPGS 270
D+PVANNAWVYATKFVPG+
Sbjct: 181 DNPVANNAWVYATKFVPGA 199
>emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
gi|7443221|pir||T08089 chlorophyll a/b-binding protein
type III Lhcb3.1 precursor - rape (fragment)
Length = 202
Score = 384 bits (987), Expect = e-105
Identities = 182/202 (90%), Positives = 191/202 (94%)
Query: 6 MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFS 65
MA+T SS +V+ P+PFLGQTKGS N LRD VS+G+ KYTMGNDLWYGPDRVKYLGPFS
Sbjct: 1 MASTFMSSSSVLTPTPFLGQTKGSTFNPLRDAVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 66 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL+KWV
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 186 VGEGNNLYPGGQYFDPLGLADD 207
VGEGN+LYPGGQYFDPLGLADD
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADD 202
Score = 33.1 bits (74), Expect = 8.4
Identities = 15/39 (38%), Positives = 22/39 (55%)
Query: 193 YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 231
+PG +D GL+ DP FA+ + E+ +GR AM G
Sbjct: 71 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 109
>sp|P14278|CB24_LYCES Chlorophyll a-b binding protein 4, chloroplast precursor (LHCII
type I CAB-4) (LHCP) gi|170390|gb|AAA34141.1|
chlorophyll a/b-binding protein precursor
Length = 265
Score = 369 bits (946), Expect = e-101
Identities = 189/262 (72%), Positives = 209/262 (79%), Gaps = 12/262 (4%)
Query: 17 IKPSPFLGQTKGSNSNT-LRDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSAQT 68
I+ S F+GQ G + N +R V + G G+ TM +WYG DR KYLGPFS QT
Sbjct: 6 IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVK 124
Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGE 188
F E VWFKAGSQIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+R+ G P +GE
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGE 183
Query: 189 G-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
G + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 184 GLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 248 LDHLDDPVANNAWVYATKFVPG 269
DH++DPVANNAW YAT FVPG
Sbjct: 243 SDHINDPVANNAWAYATNFVPG 264
>emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
gi|480616|pir||S37099 chlorophyll a/b binding protein -
prince's feather
Length = 264
Score = 367 bits (941), Expect = e-100
Identities = 186/263 (70%), Positives = 207/263 (77%), Gaps = 11/263 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSAQ 67
+ I+ S F+GQT N L V G+++M +WYGPDR KYLGPFS Q
Sbjct: 4 STIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 63
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
TPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGV 122
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
F E VWFKAGSQIF EGGLDYLGNPNL+HAQSILA+ QV+LMGL+EG+R+ G P +G
Sbjct: 123 KFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LG 181
Query: 188 EG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 246
EG + +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 182 EGLDKIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240
Query: 247 LLDHLDDPVANNAWVYATKFVPG 269
L DHL DPVANNAW YAT FVPG
Sbjct: 241 LSDHLADPVANNAWAYATNFVPG 263
>dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 367 bits (941), Expect = e-100
Identities = 187/269 (69%), Positives = 209/269 (77%), Gaps = 4/269 (1%)
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MA++ MA +++ +G +K SP + G+ T+R S K LWYGPDRVKY
Sbjct: 1 MASSTMALSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KPVSSGSLWYGPDRVKY 58
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
L + V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 119 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 177
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
G P + LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 AGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPG 269
KGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWAYATNFVPG 265
>gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 366 bits (939), Expect = e-100
Identities = 190/264 (71%), Positives = 207/264 (77%), Gaps = 12/264 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT SN L R + +G G+ TM +WYGPDR KYLGPFS
Sbjct: 4 SAIQQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
QTPSYLTGEFPGDYGWDTAGLSADPE FAKN LEVIH RWAMLGALGC+ PE+L K
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+R+ G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAM SMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFVQAIVTGKGPVE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL DH+ DPVANNAW YAT FVPG
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPG 264
>gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 365 bits (938), Expect = e-100
Identities = 187/264 (70%), Positives = 210/264 (78%), Gaps = 12/264 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F+GQT + N L R + S G G+ TM +WYG DR KYLGPFS
Sbjct: 4 SAIQQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QV+LMGL+EG+R+ G P +
Sbjct: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL D ++DPVANNAW +AT FVPG
Sbjct: 241 NLFDQINDPVANNAWAFATNFVPG 264
>emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
gi|115802|sp|P27494|CB23_TOBAC Chlorophyll a-b binding
protein 36, chloroplast precursor (LHCII type I CAB-36)
(LHCP)
Length = 265
Score = 365 bits (938), Expect = e-100
Identities = 189/264 (71%), Positives = 208/264 (78%), Gaps = 12/264 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT + N L R + S G+ TM +WYG DR KYLGPFS
Sbjct: 4 SAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAV QV+LMGL+EG+R+ G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL DH+ DPVANNAW YAT FVPG
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPG 264
>emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
gi|115811|sp|P12062|CB26_PETSP Chlorophyll a-b binding
protein 37, chloroplast precursor (LHCII type I CAB-37)
(LHCP)
Length = 265
Score = 364 bits (935), Expect = 1e-99
Identities = 188/264 (71%), Positives = 208/264 (78%), Gaps = 12/264 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT + N L R + S G G+ TM +WYG DR KYLGPFS
Sbjct: 4 SAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+R+ G P +
Sbjct: 123 VTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL DH+ DPVANNAW +AT FVPG
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPG 264
>emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 364 bits (935), Expect = 1e-99
Identities = 186/270 (68%), Positives = 208/270 (76%), Gaps = 8/270 (2%)
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MA + + + + T++KP L + G N SM + +WYGPDR KY
Sbjct: 1 MATSTIQQSAFAGQTILKPQNELVRKFGGNGGR----ASMRRTVKSAPQSIWYGPDRPKY 56
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+
Sbjct: 57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 116
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
L K V F E VWFKAGSQIF EGGLDYLGNPNL+HAQSILA+ QV+LMGL+EG+R+
Sbjct: 117 LSK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRV 175
Query: 181 NGLPGVGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
G P +GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 176 GGGP-LGEGLDKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 233
Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
GKGP+ENL DHL DPVANNAW +AT FVPG
Sbjct: 234 GKGPIENLSDHLADPVANNAWAFATNFVPG 263
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,283,832
Number of Sequences: 2540612
Number of extensions: 24221661
Number of successful extensions: 48308
Number of sequences better than 10.0: 541
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 46198
Number of HSP's gapped (non-prelim): 833
length of query: 270
length of database: 863,360,394
effective HSP length: 126
effective length of query: 144
effective length of database: 543,243,282
effective search space: 78227032608
effective search space used: 78227032608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0590a.3