BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0587.1
(134 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF76444.1| Contains similarity to DINP protein from Homo sap... 158 2e-38
ref|NP_175420.2| UMUC-like DNA repair family protein [Arabidopsi... 158 2e-38
gb|AAS91582.1| DNA-directed polymerase kappa; AtPOLK [Arabidopsi... 158 2e-38
gb|AAT81654.1| putative DNA-directed polymerase, having alternat... 145 3e-34
gb|AAT81653.1| putative DNA-directed polymerase, having alternat... 145 3e-34
ref|XP_608781.1| PREDICTED: similar to polymerase (DNA directed)... 123 8e-28
ref|XP_615107.1| PREDICTED: similar to polymerase (DNA directed)... 123 8e-28
gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens] gi... 120 7e-27
gb|AAH50718.1| POLK protein [Homo sapiens] 120 7e-27
gb|AAH14955.1| POLK protein [Homo sapiens] 120 7e-27
ref|XP_536321.1| PREDICTED: similar to polymerase (DNA directed)... 120 7e-27
gb|AAN15780.1| DNA polymerase kappa [Homo sapiens] 120 7e-27
dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sa... 120 7e-27
gb|AAF23270.1| DINP protein [Homo sapiens] 120 7e-27
gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens] 120 7e-27
gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens] 120 7e-27
pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of H... 120 7e-27
dbj|BAB58976.1| DINB1 [Homo sapiens] 120 7e-27
dbj|BAC03714.1| unnamed protein product [Homo sapiens] 120 9e-27
gb|AAV80829.1| polymerase kappa isoform 3 [Homo sapiens] 120 9e-27
>gb|AAF76444.1| Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain. [Arabidopsis
thaliana] gi|25405346|pir||C96536 hypothetical protein
F2J10.13 [imported] - Arabidopsis thaliana
Length = 435
Score = 158 bits (400), Expect = 2e-38
Identities = 82/127 (64%), Positives = 99/127 (77%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
+RILELEA+RDLS WL +MD FYAAVETLS+P+ GK MAVG +SMIST++++ARKFG
Sbjct: 90 KRILELEATRDLSRIWLHVDMDAFYAAVETLSDPSIKGKPMAVGGLSMISTANYEARKFG 149
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA K CP+LIFVP DF K+ S L V + YDP+FIAGSLD AYLD
Sbjct: 150 VRAAMPGFIARKLCPDLIFVPVDFTKYTHYSD---LTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 128 TEVCKER 134
TEVC+ER
Sbjct: 207 TEVCRER 213
>ref|NP_175420.2| UMUC-like DNA repair family protein [Arabidopsis thaliana]
Length = 785
Score = 158 bits (400), Expect = 2e-38
Identities = 82/127 (64%), Positives = 99/127 (77%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
+RILELEA+RDLS WL +MD FYAAVETLS+P+ GK MAVG +SMIST++++ARKFG
Sbjct: 90 KRILELEATRDLSRIWLHVDMDAFYAAVETLSDPSIKGKPMAVGGLSMISTANYEARKFG 149
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA K CP+LIFVP DF K+ S L V + YDP+FIAGSLD AYLD
Sbjct: 150 VRAAMPGFIARKLCPDLIFVPVDFTKYTHYSD---LTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 128 TEVCKER 134
TEVC+ER
Sbjct: 207 TEVCRER 213
>gb|AAS91582.1| DNA-directed polymerase kappa; AtPOLK [Arabidopsis thaliana]
Length = 671
Score = 158 bits (400), Expect = 2e-38
Identities = 82/127 (64%), Positives = 99/127 (77%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
+RILELEA+RDLS WL +MD FYAAVETLS+P+ GK MAVG +SMIST++++ARKFG
Sbjct: 90 KRILELEATRDLSRIWLHVDMDAFYAAVETLSDPSIKGKPMAVGGLSMISTANYEARKFG 149
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA K CP+LIFVP DF K+ S L V + YDP+FIAGSLD AYLD
Sbjct: 150 VRAAMPGFIARKLCPDLIFVPVDFTKYTHYSD---LTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 128 TEVCKER 134
TEVC+ER
Sbjct: 207 TEVCRER 213
>gb|AAT81654.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 145 bits (365), Expect = 3e-34
Identities = 75/126 (59%), Positives = 94/126 (74%), Gaps = 3/126 (2%)
Query: 9 RILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGV 68
+ILELEASRDLS WL +MD FYA VE L NP+ GK +AVGSMSMI+T+S++ARKFGV
Sbjct: 89 KILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVGSMSMIATASYEARKFGV 148
Query: 69 RSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDKT 128
R+A+P FI K CPEL+FV +F+++ S L V QRYDPNF+A SLD AYL+ T
Sbjct: 149 RAAMPGFIGCKLCPELVFVRPNFERYTYYSE---LTRKVFQRYDPNFVATSLDEAYLNIT 205
Query: 129 EVCKER 134
+VC +R
Sbjct: 206 KVCFDR 211
>gb|AAT81653.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa (japonica cultivar-group)]
Length = 616
Score = 145 bits (365), Expect = 3e-34
Identities = 75/126 (59%), Positives = 94/126 (74%), Gaps = 3/126 (2%)
Query: 9 RILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGV 68
+ILELEASRDLS WL +MD FYA VE L NP+ GK +AVGSMSMI+T+S++ARKFGV
Sbjct: 43 KILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVGSMSMIATASYEARKFGV 102
Query: 69 RSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDKT 128
R+A+P FI K CPEL+FV +F+++ S L V QRYDPNF+A SLD AYL+ T
Sbjct: 103 RAAMPGFIGCKLCPELVFVRPNFERYTYYSE---LTRKVFQRYDPNFVATSLDEAYLNIT 159
Query: 129 EVCKER 134
+VC +R
Sbjct: 160 KVCFDR 165
>ref|XP_608781.1| PREDICTED: similar to polymerase (DNA directed) kappa, partial [Bos
taurus]
Length = 186
Score = 123 bits (309), Expect = 8e-28
Identities = 67/127 (52%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SRDL+S + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 43 RFAVELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 102
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +SR + +L YDPNF+A SLD AYL+
Sbjct: 103 VRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREV---KEILTDYDPNFMAMSLDEAYLNI 159
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 160 TKHLEER 166
>ref|XP_615107.1| PREDICTED: similar to polymerase (DNA directed) kappa, partial [Bos
taurus]
Length = 439
Score = 123 bits (309), Expect = 8e-28
Identities = 67/127 (52%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SRDL+S + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 98 RFAVELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 157
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +SR + +L YDPNF+A SLD AYL+
Sbjct: 158 VRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREV---KEILTDYDPNFMAMSLDEAYLNI 214
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 215 TKHLEER 221
>gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens]
gi|7705344|ref|NP_057302.1| polymerase (DNA directed)
kappa [Homo sapiens] gi|6049286|gb|AAF02540.1| DINB
protein [Homo sapiens] gi|59798438|sp|Q9UBT6|POLK_HUMAN
DNA polymerase kappa (DINB protein) (DINP)
gi|6463740|dbj|BAA86943.1| DINB1 [Homo sapiens]
Length = 870
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>gb|AAH50718.1| POLK protein [Homo sapiens]
Length = 472
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>gb|AAH14955.1| POLK protein [Homo sapiens]
Length = 313
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>ref|XP_536321.1| PREDICTED: similar to polymerase (DNA directed) kappa [Canis
familiaris]
Length = 850
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SRDL++ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEV---KEILADYDPNFLAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLQER 211
>gb|AAN15780.1| DNA polymerase kappa [Homo sapiens]
Length = 672
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sapiens]
Length = 790
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 8 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 67
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 68 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 124
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 125 TKHLEER 131
>gb|AAF23270.1| DINP protein [Homo sapiens]
Length = 870
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens]
Length = 461
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens]
Length = 489
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 88 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 147
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 148 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 204
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 205 TKHLEER 211
>pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa gi|52695703|pdb|1T94|A Chain A, Crystal
Structure Of The Catalytic Core Of Human Dna Polymerase
Kappa
Length = 459
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 21 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 80
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 81 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 137
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 138 TKHLEER 144
>dbj|BAB58976.1| DINB1 [Homo sapiens]
Length = 146
Score = 120 bits (301), Expect = 7e-27
Identities = 65/127 (51%), Positives = 89/127 (69%), Gaps = 3/127 (2%)
Query: 8 RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
R +ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FG
Sbjct: 3 RFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFG 62
Query: 68 VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
VR+A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+
Sbjct: 63 VRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNI 119
Query: 128 TEVCKER 134
T+ +ER
Sbjct: 120 TKHLEER 126
>dbj|BAC03714.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 120 bits (300), Expect = 9e-27
Identities = 64/124 (51%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 11 LELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGVRS 70
+ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FGVR+
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 71 AIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDKTEV 130
A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+ T+
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNITKH 117
Query: 131 CKER 134
+ER
Sbjct: 118 LEER 121
>gb|AAV80829.1| polymerase kappa isoform 3 [Homo sapiens]
Length = 371
Score = 120 bits (300), Expect = 9e-27
Identities = 64/124 (51%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 11 LELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGVRS 70
+ELE SR+LS+ + +MD FYAAVE NP K +AVGSMSM+STS++ AR+FGVR+
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 71 AIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDKTEV 130
A+P FIA + CP+LI VP +F K+ +S+ + +L YDPNF+A SLD AYL+ T+
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEV---KEILADYDPNFMAMSLDEAYLNITKH 117
Query: 131 CKER 134
+ER
Sbjct: 118 LEER 121
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,588,679
Number of Sequences: 2540612
Number of extensions: 6065308
Number of successful extensions: 17578
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 16795
Number of HSP's gapped (non-prelim): 415
length of query: 134
length of database: 863,360,394
effective HSP length: 110
effective length of query: 24
effective length of database: 583,893,074
effective search space: 14013433776
effective search space used: 14013433776
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0587.1