BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.2
(141 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA07234.1| histone H2A [Cicer arietinum] gi|15214035|sp|O65... 254 4e-67
gb|AAM62890.1| histone H2A, putative [Arabidopsis thaliana] gi|2... 249 8e-66
gb|AAM16236.1| At1g08880/F7G19_24 [Arabidopsis thaliana] gi|1522... 247 4e-65
emb|CAA48030.1| histone H2A [Picea abies] gi|30024112|emb|CAC846... 245 2e-64
gb|AAM65474.1| putative histone H2A [Arabidopsis thaliana] 243 9e-64
gb|AAM47301.1| unknown protein [Oryza sativa (japonica cultivar-... 226 9e-59
emb|CAB79578.1| histone H2A-like protein [Arabidopsis thaliana] ... 202 1e-51
gb|AAB31111.1| histone H2A homolog [Phaseolus vulgaris, Great No... 202 1e-51
pir||JQ0796 histone H2A.IV - Volvox carteri gi|121985|sp|P16866|... 202 2e-51
pir||S59126 histone H2A (clones CH-II and CH-III) - Chlamydomona... 201 2e-51
pir||JQ0794 histone H2A.III - Volvox carteri gi|121981|sp|P16865... 201 2e-51
gb|AAM65801.1| histone H2A [Arabidopsis thaliana] gi|9758956|dbj... 201 4e-51
gb|AAM67032.1| histone H2A-like protein [Arabidopsis thaliana] 199 9e-51
pir||S59590 histone H2A (clone CH-IV) - Chlamydomonas reinhardti... 199 9e-51
ref|XP_482492.1| putative histone H2A [Oryza sativa (japonica cu... 199 2e-50
ref|XP_478632.1| histone H2A [Oryza sativa (japonica cultivar-gr... 198 2e-50
dbj|BAA07280.1| protein H2A [Triticum aestivum] gi|536892|dbj|BA... 198 2e-50
ref|XP_478633.1| putative histone H2A [Oryza sativa (japonica cu... 197 4e-50
gb|AAM62543.1| histone H2A, putative [Arabidopsis thaliana] gi|1... 197 4e-50
gb|AAL33777.1| putative histone H2A protein [Arabidopsis thalian... 197 6e-50
>emb|CAA07234.1| histone H2A [Cicer arietinum] gi|15214035|sp|O65759|H2A_CICAR
Histone H2A
Length = 139
Score = 254 bits (648), Expect = 4e-67
Identities = 133/141 (94%), Positives = 134/141 (94%), Gaps = 2/141 (1%)
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSST TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 1 MSSTA--TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 58
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 59 VLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 118
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKK GKGKGEIGSASQEF
Sbjct: 119 TLLPKKVGKGKGEIGSASQEF 139
>gb|AAM62890.1| histone H2A, putative [Arabidopsis thaliana]
gi|20334846|gb|AAM16179.1| At1g54690/T22H22_12
[Arabidopsis thaliana] gi|15221875|ref|NP_175868.1|
histone H2A, putative [Arabidopsis thaliana]
gi|15724172|gb|AAL06478.1| At1g54690/T22H22_12
[Arabidopsis thaliana] gi|3776566|gb|AAC64883.1| Strong
similarity to histone H2A gb|AJ006768 from Cicer
arietinum. [Arabidopsis thaliana]
gi|25294264|pir||A96589 hypothetical protein T22H22.12
[imported] - Arabidopsis thaliana
Length = 142
Score = 249 bits (637), Expect = 8e-66
Identities = 128/140 (91%), Positives = 129/140 (91%)
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
S G TKGGRGKPKA KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 3 SGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 62
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 63 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 122
Query: 122 LLPKKAGKGKGEIGSASQEF 141
LLP K GK KG+IGSASQEF
Sbjct: 123 LLPSKVGKNKGDIGSASQEF 142
>gb|AAM16236.1| At1g08880/F7G19_24 [Arabidopsis thaliana]
gi|15223948|ref|NP_172363.1| histone H2A, putative
[Arabidopsis thaliana] gi|15724304|gb|AAL06545.1|
At1g08880/F7G19_24 [Arabidopsis thaliana]
gi|1922944|gb|AAB70416.1| Strong similarity to Picea
histone H2A (gb|X67819). ESTs
gb|ATTS3874,gb|T46627,gb|T14194 come from this gene.
[Arabidopsis thaliana] gi|25294265|pir||E86220
hypothetical protein [imported] - Arabidopsis thaliana
Length = 142
Score = 247 bits (631), Expect = 4e-65
Identities = 126/140 (90%), Positives = 129/140 (92%)
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
+ G TKGGRGKPKA KSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAV
Sbjct: 3 TGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV 62
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 63 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 122
Query: 122 LLPKKAGKGKGEIGSASQEF 141
LLP K GK KG+IGSASQEF
Sbjct: 123 LLPSKVGKNKGDIGSASQEF 142
>emb|CAA48030.1| histone H2A [Picea abies] gi|30024112|emb|CAC84681.1| putative
histone H2B [Pinus pinaster] gi|419741|pir||S30155
histone H2A - Norway spruce
gi|462234|sp|P35063|H2A_PICAB Histone H2A
Length = 138
Score = 245 bits (625), Expect = 2e-64
Identities = 128/141 (90%), Positives = 133/141 (93%), Gaps = 3/141 (2%)
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSS+G KGGRGK K+ KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+A
Sbjct: 1 MSSSGA---KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAA 57
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ
Sbjct: 58 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQ 117
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
LLPKK+GK KGEIGSASQEF
Sbjct: 118 VLLPKKSGKDKGEIGSASQEF 138
>gb|AAM65474.1| putative histone H2A [Arabidopsis thaliana]
Length = 143
Score = 243 bits (619), Expect = 9e-64
Identities = 126/141 (89%), Positives = 129/141 (91%), Gaps = 1/141 (0%)
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIA-RFLKAGKYAERVGAGAPVYLSA 60
+ G TKGGRGKPKA KSVSRS KAGLQFPVGRIA RFLK+GKYAERVGAGAPVYLSA
Sbjct: 3 TGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIALRFLKSGKYAERVGAGAPVYLSA 62
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 63 VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLP K GK KG+IGSASQEF
Sbjct: 123 TLLPSKVGKNKGDIGSASQEF 143
>gb|AAM47301.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|50540696|gb|AAT77853.1| putative histone H2A [Oryza
sativa (japonica cultivar-group)]
gi|62733581|gb|AAX95698.1| Core histone H2A/H2B/H3/H4,
putative [Oryza sativa (japonica cultivar-group)]
Length = 137
Score = 226 bits (576), Expect = 9e-59
Identities = 121/140 (86%), Positives = 126/140 (89%), Gaps = 5/140 (3%)
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
SS GG GGRGK K K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 3 SSQGG----GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 58
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q
Sbjct: 59 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 118
Query: 122 LLPKKAGKGKGEIGSASQEF 141
LLPKK G GKG+IGSASQEF
Sbjct: 119 LLPKKGG-GKGDIGSASQEF 137
>emb|CAB79578.1| histone H2A-like protein [Arabidopsis thaliana]
gi|3269284|emb|CAA19717.1| histone H2A-like protein
[Arabidopsis thaliana] gi|29824201|gb|AAP04061.1|
putative histone H2A [Arabidopsis thaliana]
gi|28973733|gb|AAO64183.1| putative histone H2A
[Arabidopsis thaliana] gi|15237024|ref|NP_194453.1|
histone H2A, putative [Arabidopsis thaliana]
gi|7439708|pir||T05747 histone H2A.M4I22.40 -
Arabidopsis thaliana
Length = 131
Score = 202 bits (515), Expect = 1e-51
Identities = 107/124 (86%), Positives = 109/124 (87%), Gaps = 4/124 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GSSK 126
>gb|AAB31111.1| histone H2A homolog [Phaseolus vulgaris, Great Northern, immature
embryos, Peptide Partial, 146 aa]
Length = 146
Score = 202 bits (515), Expect = 1e-51
Identities = 107/137 (78%), Positives = 120/137 (87%), Gaps = 3/137 (2%)
Query: 1 MSSTGGNNT--KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
MSST T KGGRGKPK KSVSRS KAGLQFPVGRIAR+LKAG+YA+RVG+G+PVYL
Sbjct: 1 MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP-N 117
SAVLEYLAAEVLELAG AARDNKK+RI+PRHIQLAVRNDEELSKL+GSVTIA+GGVLP N
Sbjct: 61 SAVLEYLAAEVLELAGIAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKN 120
Query: 118 IHQTLLPKKAGKGKGEI 134
+ P+K GKG+GE+
Sbjct: 121 SSKICCPRKTGKGEGEV 137
>pir||JQ0796 histone H2A.IV - Volvox carteri gi|121985|sp|P16866|H2A4_VOLCA
Histone H2A-IV gi|170658|gb|AAA34249.1| histone H2A-IV
Length = 129
Score = 202 bits (513), Expect = 2e-51
Identities = 101/122 (82%), Positives = 109/122 (88%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK+ GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>pir||S59126 histone H2A (clones CH-II and CH-III) - Chlamydomonas reinhardtii
gi|790703|gb|AAA99968.1| histone H2A
gi|571478|gb|AAA98451.1| histone H2A
gi|571473|gb|AAA98447.1| histone H2A
gi|1708102|sp|P50567|H2A_CHLRE Histone H2A
Length = 129
Score = 201 bits (512), Expect = 2e-51
Identities = 101/122 (82%), Positives = 108/122 (87%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>pir||JQ0794 histone H2A.III - Volvox carteri gi|121981|sp|P16865|H2A3_VOLCA
Histone H2A-III gi|170655|gb|AAA34247.1| histone H2A-III
Length = 129
Score = 201 bits (512), Expect = 2e-51
Identities = 101/122 (82%), Positives = 109/122 (88%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK+ GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>gb|AAM65801.1| histone H2A [Arabidopsis thaliana] gi|9758956|dbj|BAB09343.1|
histone H2A [Arabidopsis thaliana]
gi|28827756|gb|AAO50722.1| putative histone H2A protein
[Arabidopsis thaliana] gi|28393261|gb|AAO42059.1|
putative histone H2A protein [Arabidopsis thaliana]
gi|7595339|gb|AAF64419.1| histone H2A [Arabidopsis
thaliana] gi|7595337|gb|AAF64418.1| histone H2A
[Arabidopsis thaliana] gi|15239697|ref|NP_200275.1|
histone H2A [Arabidopsis thaliana]
Length = 130
Score = 201 bits (510), Expect = 4e-51
Identities = 106/124 (85%), Positives = 109/124 (87%), Gaps = 4/124 (3%)
Query: 12 GRGKPK----AAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GASK 126
>gb|AAM67032.1| histone H2A-like protein [Arabidopsis thaliana]
Length = 131
Score = 199 bits (507), Expect = 9e-51
Identities = 106/124 (85%), Positives = 108/124 (86%), Gaps = 4/124 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLL VTIANGGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLEDVTIANGGVMPNIHNLLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GSSK 126
>pir||S59590 histone H2A (clone CH-IV) - Chlamydomonas reinhardtii
gi|571481|gb|AAA98453.1| histone H2A
Length = 130
Score = 199 bits (507), Expect = 9e-51
Identities = 100/121 (82%), Positives = 107/121 (87%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGK 124
Query: 132 G 132
G
Sbjct: 125 G 125
>ref|XP_482492.1| putative histone H2A [Oryza sativa (japonica cultivar-group)]
gi|29837243|dbj|BAC75621.1| putative histone H2A [Oryza
sativa (japonica cultivar-group)]
gi|38175493|dbj|BAD01189.1| putative histone H2A [Oryza
sativa (japonica cultivar-group)]
Length = 134
Score = 199 bits (505), Expect = 2e-50
Identities = 104/121 (85%), Positives = 109/121 (89%), Gaps = 4/121 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
Query: 128 G 128
G
Sbjct: 123 G 123
>ref|XP_478632.1| histone H2A [Oryza sativa (japonica cultivar-group)]
gi|34393263|dbj|BAC83133.1| histone H2A [Oryza sativa
(japonica cultivar-group)]
Length = 135
Score = 198 bits (504), Expect = 2e-50
Identities = 104/124 (83%), Positives = 109/124 (87%), Gaps = 4/124 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GSSK 126
>dbj|BAA07280.1| protein H2A [Triticum aestivum] gi|536892|dbj|BAA07278.1| protein
H2A [Triticum aestivum] gi|2130105|pir||S53521 histone
H2A.4 - wheat
Length = 134
Score = 198 bits (504), Expect = 2e-50
Identities = 104/124 (83%), Positives = 110/124 (87%), Gaps = 4/124 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GGSK 126
>ref|XP_478633.1| putative histone H2A [Oryza sativa (japonica cultivar-group)]
gi|34393264|dbj|BAC83134.1| putative histone H2A [Oryza
sativa (japonica cultivar-group)]
Length = 135
Score = 197 bits (501), Expect = 4e-50
Identities = 103/121 (85%), Positives = 110/121 (90%), Gaps = 4/121 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
Query: 128 G 128
G
Sbjct: 123 G 123
>gb|AAM62543.1| histone H2A, putative [Arabidopsis thaliana]
gi|19310641|gb|AAL85051.1| putative histone H2A protein
[Arabidopsis thaliana] gi|15028329|gb|AAK76641.1|
putative histone H2A protein [Arabidopsis thaliana]
gi|9294346|dbj|BAB02243.1| histone H2A-like protein
[Arabidopsis thaliana] gi|15232330|ref|NP_188703.1|
histone H2A, putative [Arabidopsis thaliana]
Length = 132
Score = 197 bits (501), Expect = 4e-50
Identities = 105/124 (84%), Positives = 107/124 (85%), Gaps = 4/124 (3%)
Query: 12 GRGKPK----AAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122
Query: 128 GKGK 131
G K
Sbjct: 123 GASK 126
>gb|AAL33777.1| putative histone H2A protein [Arabidopsis thaliana]
gi|13877851|gb|AAK44003.1| putative histone H2A protein
[Arabidopsis thaliana] gi|15223708|ref|NP_175517.1|
histone H2A, putative [Arabidopsis thaliana]
gi|12320785|gb|AAG50540.1| histone H2A, putative
[Arabidopsis thaliana] gi|25294262|pir||G96547 probable
histone H2A [imported] - Arabidopsis thaliana
Length = 132
Score = 197 bits (500), Expect = 6e-50
Identities = 103/124 (83%), Positives = 107/124 (86%), Gaps = 4/124 (3%)
Query: 12 GRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
GRGK A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3 GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKK
Sbjct: 63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122
Query: 128 GKGK 131
G K
Sbjct: 123 GASK 126
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.312 0.132 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,135,345
Number of Sequences: 2540612
Number of extensions: 9084479
Number of successful extensions: 18068
Number of sequences better than 10.0: 651
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 17250
Number of HSP's gapped (non-prelim): 673
length of query: 141
length of database: 863,360,394
effective HSP length: 117
effective length of query: 24
effective length of database: 566,108,790
effective search space: 13586610960
effective search space used: 13586610960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0544.2