BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.5
(58 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 87 9e-17
gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] 70 2e-11
gb|AAX95246.1| retrotransposon protein, putative, Ty3-gypsy sub-... 69 3e-11
gb|AAP52174.1| putative polyprotein [Oryza sativa (japonica cult... 68 7e-11
ref|XP_474078.1| OSJNBa0063C18.15 [Oryza sativa (japonica cultiv... 68 7e-11
emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar... 68 7e-11
gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [... 67 1e-10
gb|AAP53894.1| putative gag-pol protein [Oryza sativa (japonica ... 67 1e-10
emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultiva... 67 1e-10
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 67 1e-10
gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cult... 67 1e-10
ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cu... 67 1e-10
ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultiv... 67 1e-10
ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultiva... 67 1e-10
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 67 1e-10
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 67 1e-10
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 67 1e-10
emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa (japonica cultiva... 67 1e-10
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 67 1e-10
emb|CAE04051.2| OSJNBb0062B06.9 [Oryza sativa (japonica cultivar... 67 1e-10
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 87.4 bits (215), Expect = 9e-17
Identities = 40/54 (74%), Positives = 45/54 (83%)
Query: 1 KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
K IL+E HKS+LSIHPG TKMYQDL+ ++W PGMKK V EYV TCLT QKAKVE
Sbjct: 327 KTILEEAHKSKLSIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVE 380
>gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum]
Length = 1622
Score = 69.7 bits (169), Expect = 2e-11
Identities = 29/54 (53%), Positives = 40/54 (73%)
Query: 1 KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
+LIL EGH+SR SIHPG TKMY+DL+ H+W GM++ + ++V CL Q+ K E
Sbjct: 1324 QLILSEGHESRYSIHPGTTKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAE 1377
>gb|AAX95246.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1311
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/54 (55%), Positives = 37/54 (67%)
Query: 1 KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
KLIL E H+SR SIHPG TKMYQDL+ W P M++ + EYV+ C Q+ K E
Sbjct: 903 KLILSEAHESRYSIHPGTTKMYQDLRNRLWWPSMRREIAEYVVLCDVCQRVKAE 956
>gb|AAP52174.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531170|ref|NP_919887.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725924|gb|AAN04934.1| Putative polyprotein [Oryza
sativa] gi|20177629|gb|AAM14684.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1569
Score = 67.8 bits (164), Expect = 7e-11
Identities = 32/53 (60%), Positives = 35/53 (65%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E HKS S+HPG TKMYQDLK +W P MK+ V EYV C QK K E
Sbjct: 1147 LILKEAHKSAYSLHPGSTKMYQDLKEGYWWPNMKRDVAEYVALCDVCQKVKAE 1199
>ref|XP_474078.1| OSJNBa0063C18.15 [Oryza sativa (japonica cultivar-group)]
gi|38347324|emb|CAE05974.2| OSJNBa0063C18.15 [Oryza
sativa (japonica cultivar-group)]
gi|38344877|emb|CAE01541.2| OSJNBa0033G05.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1764
Score = 67.8 bits (164), Expect = 7e-11
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1388 LILKEAHESAYSIHPGSTKMYQDIKAYFWWTGMKRDVAEYVALCDVCQRVKAE 1440
>emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar-group)]
gi|50927889|ref|XP_473472.1| OSJNBa0065O17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 67.8 bits (164), Expect = 7e-11
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1431 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDVCQRVKAE 1483
>gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37537082|ref|NP_922843.1|
putative gypsy-type retrotransposon polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|12643059|gb|AAK00448.1| putative gypsy-type
retrotransposon polyprotein [Oryza sativa]
Length = 762
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 460 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 512
>gb|AAP53894.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534610|ref|NP_921607.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1829
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1431 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1483
>emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultivar-group)]
gi|50930413|ref|XP_474734.1| OSJNBb0013J13.17 [Oryza
sativa (japonica cultivar-group)]
Length = 864
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 594 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 646
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1341 LILKEAHESAYSIHPGSTKMYQDIKAYFWWTGMKRDVAEYVALCDICQRVKAE 1393
>gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50931465|ref|XP_475260.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46391139|gb|AAS90666.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1649
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1228 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1280
>ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47900493|gb|AAT39250.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1688
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1268 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1320
>ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultivar-group)]
gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1431 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1483
>ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultivar-group)]
gi|32489382|emb|CAE04228.1| OSJNBa0011F23.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1787
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1367 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1419
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1431 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1483
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 594 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 646
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1152 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1204
>emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa (japonica cultivar-group)]
gi|50926837|ref|XP_473332.1| OSJNBa0091D06.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1831
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1433 LILKEAHESAYSIHPGSTKMYQDIKAYFWWSGMKRDVAEYVALCDICQRVKAE 1485
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1342 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAE 1394
>emb|CAE04051.2| OSJNBb0062B06.9 [Oryza sativa (japonica cultivar-group)]
gi|50923239|ref|XP_471980.1| OSJNBb0062B06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 2 LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVE 54
LIL E H+S SIHPG TKMYQD+K +FW GMK+ V EYV C Q+ K E
Sbjct: 1398 LILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVTEYVALCDICQRVKAE 1450
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,960,354
Number of Sequences: 2540612
Number of extensions: 2468568
Number of successful extensions: 4995
Number of sequences better than 10.0: 572
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4417
Number of HSP's gapped (non-prelim): 578
length of query: 58
length of database: 863,360,394
effective HSP length: 34
effective length of query: 24
effective length of database: 776,979,586
effective search space: 18647510064
effective search space used: 18647510064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0476b.5