BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.2
(264 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG01117.1| BAC19.2 [Lycopersicon esculentum] 38 0.25
gb|AAX24269.1| unknown [Schistosoma japonicum] 35 1.6
gb|AAG52189.1| hypothetical protein; 59299-58097 [Arabidopsis th... 35 2.8
emb|CAB62450.1| putative protein [Arabidopsis thaliana] gi|67633... 35 2.8
gb|AAT77350.1| hypothetical protein [Oryza sativa (japonica cult... 34 3.6
dbj|BAC24274.1| plsB [Wigglesworthia glossinidia endosymbiont of... 33 6.2
ref|NP_613378.1| Predicted ABC-class ATPase, RNase L inhibitor h... 33 8.1
gb|AAN60755.1| polyketide synthase [Cryptosporidium parvum] 33 8.1
gb|EAK87820.1| cryptosporidium polyketide synthase [Cryptosporid... 33 8.1
>gb|AAG01117.1| BAC19.2 [Lycopersicon esculentum]
Length = 358
Score = 38.1 bits (87), Expect = 0.25
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Query: 76 DGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLR-WKKVLRLLICNPVTSSWAPLRTRCG 134
D + GVP F N + I SS NGL+ R R KV ICNP T W L
Sbjct: 85 DANSCGVPDPFLNFLPEPVDIKSSSNGLLCCRGREGDKV--YYICNPFTKQWKELPKSNA 142
Query: 135 EYDANANVNIIIIPATAPTRNDYRLLSVTRQNKIFPPYVLKEYNQIADQWQVLNPDMNLG 194
+ ++ + ++ P+ +Y+++ Y W++ +M G
Sbjct: 143 YHGSDPAIVLLFEPSLLNFVAEYKIICAFPSTDFDKATEFDIYYSREGCWKIAE-EMCFG 201
Query: 195 DRKLNISKPAIVNEWIYFMS 214
R + VN +Y+M+
Sbjct: 202 SRTIFPKSGIHVNGVVYWMT 221
>gb|AAX24269.1| unknown [Schistosoma japonicum]
Length = 217
Score = 35.4 bits (80), Expect = 1.6
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 165 QNKIFPPYVLKEYNQIADQWQVLNPDMNLGDRKLNISKPAIVNEWIYFMSDNYHYMNFID 224
+NK++ LK++ + + + L + L D L+++ P +++ Y SD+Y+ +D
Sbjct: 64 ENKLYSTDHLKKFTSLKQKSKRLEKHVTLSDEILDVNLPPLLHHHHYIKSDDYYNKFNVD 123
Query: 225 DA--TLMPYIMAYSHTDHTSVRLDLPNNALEYLFHGSYG 261
D + ++ H S +P+ + + + SYG
Sbjct: 124 DVDKKISKNVINSEHNYPLSCNPTIPHMSTDKISTTSYG 162
>gb|AAG52189.1| hypothetical protein; 59299-58097 [Arabidopsis thaliana]
Length = 400
Score = 34.7 bits (78), Expect = 2.8
Identities = 45/182 (24%), Positives = 77/182 (41%), Gaps = 36/182 (19%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKRVDYTRIPR-------FCEEQA--DHML----SVGDL 52
D++ + R+PA RF+CV D+ + R F + + H+L + G
Sbjct: 38 DLMVEILSRVPAKSAARFRCVSN--DWNSLLRSPYLTNLFLKRSSARPHLLITFQAEGKW 95
Query: 53 HIFTSP---VSDYHQVTGVGLHNLLEDGPAAGVPTDF-FNVVARSGKILSSWNGLIVVRL 108
F+SP +SD + NL+ VP D+ F V ++ + N ++ R
Sbjct: 96 SFFSSPEYLISDQNS-------NLVVVDNHMDVPKDYSFGVCVPVCGLMCTSNEWVLSR- 147
Query: 109 RWKKVLRLLICNPVTSSWAPL-RTRCGEYDANANVNIIIIPATAPTRNDYRLLSVTRQNK 167
K+ R++ICNP T + L + R + N+I P Y++L +T + K
Sbjct: 148 --KRDARMMICNPSTGQFKSLPKVR------SCRGNVITYIGYNPIEKQYKVLCMTIREK 199
Query: 168 IF 169
F
Sbjct: 200 PF 201
>emb|CAB62450.1| putative protein [Arabidopsis thaliana] gi|67633684|gb|AAY78766.1|
F-box family protein [Arabidopsis thaliana]
gi|15229145|ref|NP_190514.1| F-box family protein
[Arabidopsis thaliana] gi|11281322|pir||T46223
hypothetical protein T9C5.50 - Arabidopsis thaliana
Length = 397
Score = 34.7 bits (78), Expect = 2.8
Identities = 45/182 (24%), Positives = 77/182 (41%), Gaps = 36/182 (19%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKRVDYTRIPR-------FCEEQA--DHML----SVGDL 52
D++ + R+PA RF+CV D+ + R F + + H+L + G
Sbjct: 35 DLMVEILSRVPAKSAARFRCVSN--DWNSLLRSPYLTNLFLKRSSARPHLLITFQAEGKW 92
Query: 53 HIFTSP---VSDYHQVTGVGLHNLLEDGPAAGVPTDF-FNVVARSGKILSSWNGLIVVRL 108
F+SP +SD + NL+ VP D+ F V ++ + N ++ R
Sbjct: 93 SFFSSPEYLISDQNS-------NLVVVDNHMDVPKDYSFGVCVPVCGLMCTSNEWVLSR- 144
Query: 109 RWKKVLRLLICNPVTSSWAPL-RTRCGEYDANANVNIIIIPATAPTRNDYRLLSVTRQNK 167
K+ R++ICNP T + L + R + N+I P Y++L +T + K
Sbjct: 145 --KRDARMMICNPSTGQFKSLPKVR------SCRGNVITYIGYNPIEKQYKVLCMTIREK 196
Query: 168 IF 169
F
Sbjct: 197 PF 198
>gb|AAT77350.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 428
Score = 34.3 bits (77), Expect = 3.6
Identities = 33/128 (25%), Positives = 52/128 (39%), Gaps = 14/128 (10%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKRVDYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQV 65
D+L + R+P +CR KCV +R R DH + H+ + V ++
Sbjct: 24 DLLVEILSRVPYKSLCRSKCVSRRW------RRVISHPDHRHLLPRYHLGDAIVGFFYSD 77
Query: 66 TGVGLHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLRWK----KVLRLLICNP 121
T N+ +G P+ F +L S NGL++ R W+ + L+ NP
Sbjct: 78 T---FTNVTGEGRPFVDPSLPFLPKCEFLNVLDSCNGLLLCRC-WRLADPRRFDYLVVNP 133
Query: 122 VTSSWAPL 129
T W L
Sbjct: 134 ATEQWVIL 141
>dbj|BAC24274.1| plsB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis] gi|32490877|ref|NP_871131.1| hypothetical
protein WGLp128 [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
Length = 794
Score = 33.5 bits (75), Expect = 6.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 140 ANVNIIIIPATAPTRNDYRLLSVTRQNKIFPPYVLKEYNQIADQWQVLNPDMNLGDRKLN 199
+N++I+IIP N ++ + K + K+ N I Q +N NLG +N
Sbjct: 413 SNLSIVIIPTYIGYEN---IIEIKSYEKEILGFKKKKENMI-QILQGINKLNNLGSVCIN 468
Query: 200 ISKPAIVNEWIYFMSDNYHYMNFID 224
P I+N W + N HY+ + D
Sbjct: 469 FGCPIILNNW---LKKNKHYIKYFD 490
>ref|NP_613378.1| Predicted ABC-class ATPase, RNase L inhibitor homolog [Methanopyrus
kandleri AV19] gi|19886372|gb|AAM01308.1| Predicted
ABC-class ATPase, RNase L inhibitor homolog
[Methanopyrus kandleri AV19]
Length = 599
Score = 33.1 bits (74), Expect = 8.1
Identities = 19/65 (29%), Positives = 28/65 (42%)
Query: 20 VCRFKCVGKRVDYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQVTGVGLHNLLEDGPA 79
+C KC + R+P EE+ H G ++ PV +VTGV N + A
Sbjct: 61 ICAQKCPFDAIKVVRLPEELEEECVHKYEEGGFRLYRLPVPKPGKVTGVIGRNAIGKTTA 120
Query: 80 AGVPT 84
A + T
Sbjct: 121 AKILT 125
>gb|AAN60755.1| polyketide synthase [Cryptosporidium parvum]
Length = 13414
Score = 33.1 bits (74), Expect = 8.1
Identities = 18/84 (21%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Query: 87 FNVVARSGKILSSWNGL--IVVRLRWKKVLRLLICNPVTSSWAPLRTRCGEYDANANVNI 144
FN + + I+ WN + + + + ++L+L+ N + W + EY+ +
Sbjct: 3718 FNQLGKISLIIVDWNSISNLKINKNFCQILKLIYNNVINKKWFEKEYQLLEYNNEIKIKT 3777
Query: 145 IIIPATAPTRNDYRLLSVTRQNKI 168
I I + N+Y L +T + I
Sbjct: 3778 IKIKESISPYNNYMALKLTNRGAI 3801
>gb|EAK87820.1| cryptosporidium polyketide synthase [Cryptosporidium parvum]
gi|66357394|ref|XP_625875.1| cryptosporidium polyketide
synthase [Cryptosporidium parvum]
Length = 13413
Score = 33.1 bits (74), Expect = 8.1
Identities = 18/84 (21%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Query: 87 FNVVARSGKILSSWNGL--IVVRLRWKKVLRLLICNPVTSSWAPLRTRCGEYDANANVNI 144
FN + + I+ WN + + + + ++L+L+ N + W + EY+ +
Sbjct: 3718 FNQLGKISLIIVDWNSISNLKINKNFCQILKLIYNNVINKKWFEKEYQLLEYNNEIKIKT 3777
Query: 145 IIIPATAPTRNDYRLLSVTRQNKI 168
I I + N+Y L +T + I
Sbjct: 3778 IKIKESISPYNNYMALKLTNRGAI 3801
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,378,375
Number of Sequences: 2540612
Number of extensions: 20442831
Number of successful extensions: 48323
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 48317
Number of HSP's gapped (non-prelim): 10
length of query: 264
length of database: 863,360,394
effective HSP length: 126
effective length of query: 138
effective length of database: 543,243,282
effective search space: 74967572916
effective search space used: 74967572916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0476b.2