BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.7
         (109 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61731.1| unknown [Arabidopsis thaliana]                          57  8e-08
dbj|BAC43428.1| unknown protein [Arabidopsis thaliana] gi|289731...    57  8e-08
ref|XP_480771.1| pentatricopeptide (PPR) repeat-containing prote...    56  2e-07
ref|NP_173127.1| pentatricopeptide (PPR) repeat-containing prote...    55  5e-07
ref|XP_599920.1| PREDICTED: similar to hypothetical protein, par...    32  4.9

>gb|AAM61731.1| unknown [Arabidopsis thaliana]
          Length = 161

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 31/44 (70%), Positives = 33/44 (74%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I QDT   IVA LANTV +AE VLRVAATGHDKRL+ KV   LY
Sbjct: 63  ISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLY 106


>dbj|BAC43428.1| unknown protein [Arabidopsis thaliana] gi|28973105|gb|AAO63877.1|
           unknown protein [Arabidopsis thaliana]
           gi|18412164|ref|NP_565194.1| expressed protein
           [Arabidopsis thaliana]
          Length = 164

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 31/44 (70%), Positives = 33/44 (74%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I QDT   IVA LANTV +AE VLRVAATGHDKRL+ KV   LY
Sbjct: 66  ISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLY 109


>ref|XP_480771.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa (japonica cultivar-group)]
           gi|38637178|dbj|BAD03430.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa (japonica
           cultivar-group)]
          Length = 135

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY*ILTHF 62
           I Q+   +IVA LANT+ +AESVLRVAATGHDK+L+FK  P L+ ++  F
Sbjct: 84  ISQEMANSIVASLANTIGAAESVLRVAATGHDKKLFFK--PELFDMIAIF 131


>ref|NP_173127.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 738

 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 29/40 (72%), Positives = 32/40 (79%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVS 52
           I QDT   IVA LANTV +AESVLRVAATGHDKRL+ K +
Sbjct: 66  ISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKAT 105


>ref|XP_599920.1| PREDICTED: similar to hypothetical protein, partial [Bos taurus]
          Length = 111

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 6  CGSSGVAIYQDTVKAI-VACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
          CGSSG+  YQ  V  I  AC+  TV+ AE + R+A+ G+   +  K+    Y
Sbjct: 42 CGSSGIQEYQKGVPKIPTACI--TVEDAEMMSRMASRGNRIVVQLKMGAKSY 91


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.366    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,427,646
Number of Sequences: 2540612
Number of extensions: 3783682
Number of successful extensions: 30136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30132
Number of HSP's gapped (non-prelim): 5
length of query: 109
length of database: 863,360,394
effective HSP length: 85
effective length of query: 24
effective length of database: 647,408,374
effective search space: 15537800976
effective search space used: 15537800976
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 68 (30.8 bits)