BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476a.5
(268 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU93581.1| putative F-box protein [Solanum demissum] 111 2e-23
gb|AAT38719.1| putative F-Box protein [Solanum demissum] 107 3e-22
gb|AAT39293.1| putative F-box-like protein [Solanum demissum] 106 6e-22
gb|AAT38695.1| putative F-box protein [Solanum demissum] 106 8e-22
gb|AAP37713.1| At3g23880 [Arabidopsis thaliana] gi|9294656|dbj|B... 100 6e-20
gb|AAT38689.1| putative S haplotype-specific F-box protein [Sola... 99 2e-19
dbj|BAB01261.1| unnamed protein product [Arabidopsis thaliana] g... 97 5e-19
gb|AAT38720.1| putative F-Box protein [Solanum demissum] 97 6e-19
emb|CAB78299.1| putative protein [Arabidopsis thaliana] gi|47259... 87 4e-16
ref|NP_192993.2| F-box family protein [Arabidopsis thaliana] 87 4e-16
dbj|BAB01455.1| unnamed protein product [Arabidopsis thaliana] g... 80 8e-14
emb|CAB79194.1| putative protein [Arabidopsis thaliana] gi|57383... 77 7e-13
gb|AAT38692.1| putative S haplotype-specific F-box protein [Sola... 75 2e-12
dbj|BAD08320.1| S-locus F-Box protein 1 [Prunus mume] 74 4e-12
dbj|BAC66622.1| F-box [Prunus mume] 74 4e-12
dbj|BAB02037.1| unnamed protein product [Arabidopsis thaliana] 72 1e-11
ref|NP_188375.1| F-box family protein [Arabidopsis thaliana] 72 1e-11
gb|AAM15177.1| hypothetical protein [Arabidopsis thaliana] gi|38... 72 2e-11
ref|NP_176417.1| F-box family protein [Arabidopsis thaliana] 72 2e-11
gb|AAT72121.1| SFB3 [Prunus avium] 72 2e-11
>gb|AAU93581.1| putative F-box protein [Solanum demissum]
Length = 383
Score = 111 bits (278), Expect = 2e-23
Identities = 90/274 (32%), Positives = 135/274 (48%), Gaps = 31/274 (11%)
Query: 4 LTLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLL 59
L LP ELI EILLRLP++SL +F CV KSW LIS P F K H L A HRL+
Sbjct: 9 LLLPDELITEILLRLPIKSLSKFMCVSKSWLQLISSPAFVKKHIKLTANDKGYIYHRLIF 68
Query: 60 R------CLFDLDSLGDNSAVV--TLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQR-V 110
R L L N ++ L++ P + S + +GS G + +A+ QR
Sbjct: 69 RNTNNDFKFCPLPPLFTNQQLIEEILHIDSP-IERTTLSTHIVGSVNGLICVAHVRQREA 127
Query: 111 IVWNPSTGFHKQILTSCDFII--GSLYGFGYDNSTDDYFLVLI---VLASMNAKIHAYSV 165
+WNP+ K++ S + G GFGYD S DDY +V I + + ++ YS+
Sbjct: 128 YIWNPAITKSKELPKSTSNLCSDGIKCGFGYDESRDDYKVVFIDYPIRHNHRTVVNIYSL 187
Query: 166 KTNSWDYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQV--VIAYDLSETSLSEI 223
+TNSW H + + L HG F+N L+W + + + +V + ++DL++ + +
Sbjct: 188 RTNSWTTLHDQLQGIFL--LNLHGRFVNGKLYWTSSTCINNYKVCNITSFDLADGTWGSL 245
Query: 224 PLLPELAEPVLKAECMPTFYQVRVLGGCLSLCYT 257
LP + ++ V V+G LSL YT
Sbjct: 246 E-LPSCGKD-------NSYINVGVVGSDLSLLYT 271
>gb|AAT38719.1| putative F-Box protein [Solanum demissum]
Length = 327
Score = 107 bits (267), Expect = 3e-22
Identities = 93/293 (31%), Positives = 137/293 (46%), Gaps = 39/293 (13%)
Query: 4 LTLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLL 59
L LP ELI EILL+LP++SLL+F CV KSW LIS P F K+H L A HRL+
Sbjct: 10 LLLPDELITEILLKLPIKSLLKFMCVSKSWLQLISSPAFVKNHIKLTADDKGYIYHRLIF 69
Query: 60 RCLFD------LDSLGDNSAVV--TLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQR-V 110
R D L L ++ ++ P + S + +GS G + A+ QR
Sbjct: 70 RNTNDDFKFCPLPPLFTQQQLIKELYHIDSP-IERTTLSTHIVGSVNGLICAAHVRQREA 128
Query: 111 IVWNPSTGFHKQILTSCDFII--GSLYGFGYDNSTDDYFLVLIVLA----SMNAKIHAYS 164
+WNP+ K++ S + G GFGYD S DDY +V I + ++ YS
Sbjct: 129 YIWNPTITKSKELPKSRSNLCSDGIKCGFGYDESRDDYKVVFIDYPIHRHNHRTVVNIYS 188
Query: 165 VKTNSWDYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQV--VIAYDLSETSLSE 222
++T SW H + L HG F+N L+W S + + +V + ++DL++ +
Sbjct: 189 LRTKSWTTLHDQLQGFFL--LNLHGRFVNGKLYWTSSSCINNYKVCNITSFDLADGTWER 246
Query: 223 IPLLPELAEPVLKAECMPTFYQVRVLGGCLSLCYTGSR-------WDMGHERI 268
+ LP + ++ V V+G LSL YT R W M H +
Sbjct: 247 LE-LPSCGKD-------NSYINVGVVGSDLSLLYTCQRGAATSDVWIMKHSGV 291
>gb|AAT39293.1| putative F-box-like protein [Solanum demissum]
Length = 384
Score = 106 bits (265), Expect = 6e-22
Identities = 93/295 (31%), Positives = 140/295 (46%), Gaps = 44/295 (14%)
Query: 4 LTLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLL 59
L LP ELI EILLRLP++SL +F CV KSW LIS P F K+H L A HRL+
Sbjct: 10 LLLPDELITEILLRLPIKSLSKFMCVSKSWLQLISSPAFVKNHIKLTANGKGYIYHRLIF 69
Query: 60 RCLFD------LDSLGDNSAVV--TLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQR-V 110
R D L SL ++ ++ P + S + +GS G + A+ QR
Sbjct: 70 RNTNDDFKFCPLPSLFTKQQLIEELFDIVSP-IERTTLSTHIVGSVNGLICAAHVRQREA 128
Query: 111 IVWNPSTGFHKQILTSCDFII--GSLYGFGYDNSTDDYFLVLIVLASMN---AKIHAYSV 165
+WNP+ K++ S + G GFGYD S DDY +V I S + + ++ YS+
Sbjct: 129 YIWNPTITKSKELPKSRSNLCSDGIKCGFGYDESHDDYKVVFINYPSHHNHRSVVNIYSL 188
Query: 166 KTNSWDYNHVH---VLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQV--VIAYDLSETSL 220
+TNSW H + ++L C F+ L+W + + + +V + ++DL++ +
Sbjct: 189 RTNSWTTLHDQLQGIFLLNLHCR-----FVKEKLYWTSSTCINNYKVCNITSFDLADGTW 243
Query: 221 SEIPLLPELAEPVLKAECMPTFYQVRVLGGCLSLCYTGSR-------WDMGHERI 268
+ LP + ++ V V+G LSL YT R W M H +
Sbjct: 244 ESLE-LPSCGKD-------NSYINVGVVGSDLSLLYTCQRGAANSDVWIMKHSGV 290
>gb|AAT38695.1| putative F-box protein [Solanum demissum]
Length = 427
Score = 106 bits (264), Expect = 8e-22
Identities = 89/303 (29%), Positives = 135/303 (44%), Gaps = 58/303 (19%)
Query: 4 LTLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLL 59
L LP ELI EILL+LPV+SL +F CV KSW LIS P F K+H L A HRL+
Sbjct: 51 LLLPDELITEILLKLPVKSLSKFMCVSKSWLQLISSPTFVKNHIKLTADDKGYIHHRLIF 110
Query: 60 RCLFDLDSLGDNSAVVTLNLPPPCMSCIQN----------------SLYFLGSCRGFMLL 103
R ++ N +L PP + Q+ S + +GS G + +
Sbjct: 111 R------NIDGNFKFCSL---PPLFTKQQHTEELFHIDSPIERSTLSTHIVGSVNGLICV 161
Query: 104 ANEYQRVIVWNPSTGFHKQI--LTSCDFIIGSLYGFGYDNSTDDYFLVLI-------VLA 154
+ + +WNP+ K++ TS YGFGYD S DDY +V I +
Sbjct: 162 VHGQKEAYIWNPTITKSKELPKFTSNMCSSSIKYGFGYDESRDDYKVVFIHYPYNHSSSS 221
Query: 155 SMNAKIHAYSVKTNSWDYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQV--VIA 212
+M +H YS++ NSW + + +G F+N L+W + + +V + +
Sbjct: 222 NMTTVVHIYSLRNNSWTTFRDQLQCFLVN---HYGRFVNGKLYWTSSTCINKYKVCNITS 278
Query: 213 YDLSETSLSEIPLLPELAEPVLKAECMPTFYQVRVLGGCLSLCYTGSR-------WDMGH 265
+DL++ + + L P+ + + V+G LSL YT R W M H
Sbjct: 279 FDLADGTWGSLDL------PICGKDNFD--INLGVVGSDLSLLYTCQRGAATSDVWIMKH 330
Query: 266 ERI 268
+
Sbjct: 331 SAV 333
>gb|AAP37713.1| At3g23880 [Arabidopsis thaliana] gi|9294656|dbj|BAB03005.1| unnamed
protein product [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana] gi|15229536|ref|NP_189030.1| F-box family
protein [Arabidopsis thaliana]
Length = 364
Score = 100 bits (248), Expect = 6e-20
Identities = 76/247 (30%), Positives = 112/247 (44%), Gaps = 39/247 (15%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLFDL 65
LP E++ EILLRLPV+SL RFKCVC SW LIS+ FA H L+L
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALK---------HALILETSKAT 64
Query: 66 DSLGDNSAVVTLNLPPPCMSCIQNSLY---------------------FLGSCRGFMLLA 104
S V+T + SC +SLY +G+C G +
Sbjct: 65 TSTKSPYGVITTS-RYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFH 123
Query: 105 NEYQR-VIVWNPSTGFHKQI----LTSCDFIIGSLYGFGYDNSTDDYFLVLIVLASMNAK 159
+Y + + +WNP+ +++ L + D YGFGYD S DDY +V ++ K
Sbjct: 124 VDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVK 183
Query: 160 IHA--YSVKTNSWDYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQVVIAYDLSE 217
I YS + W N + + R G+++N +L+W S +S +I+YD+S
Sbjct: 184 IETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSS-SSSWTIISYDMSR 242
Query: 218 TSLSEIP 224
E+P
Sbjct: 243 DEFKELP 249
>gb|AAT38689.1| putative S haplotype-specific F-box protein [Solanum demissum]
Length = 240
Score = 98.6 bits (244), Expect = 2e-19
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 39/209 (18%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLLR- 60
LPHE+I EILL LP +SLL+F+CV KSW LIS +F K+H A HR++ +
Sbjct: 9 LPHEIIKEILLNLPPKSLLKFRCVSKSWLELISSAKFIKNHLKQTANDKEYSHHRIIFQE 68
Query: 61 --------CLFDLDSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIV 112
CL + + ++ + + P M + +GS G + L ++ + ++
Sbjct: 69 SACNFKVCCLRSMLNKEQSTELFDIGSP---MENPSIYTWIVGSVNGLICLYSKIEETVL 125
Query: 113 WNPSTGFHKQILT-------SCDFIIGSLYGFGYDNSTDDYFLVLIVLASMNAKIHAYSV 165
WNP+ K++ T C + + YGFGYD + DDY V+++M ++ YS+
Sbjct: 126 WNPAVKKSKKLPTLGAKLRNGCSYYL--KYGFGYDETRDDY----KVMSNMRIVVNIYSL 179
Query: 166 KTNSWDYNHVHVLYMHLGCDYRHGVFLNN 194
+T+SW H D HG+F+ N
Sbjct: 180 RTDSWTTLH----------DQLHGIFIIN 198
>dbj|BAB01261.1| unnamed protein product [Arabidopsis thaliana]
gi|15233315|ref|NP_188242.1| F-box family protein
[Arabidopsis thaliana]
Length = 360
Score = 97.1 bits (240), Expect = 5e-19
Identities = 63/220 (28%), Positives = 108/220 (48%), Gaps = 3/220 (1%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLFDL 65
LP EL EIL+RL ++ L RF+CVCK+W LI+DP F +++ D++ A + + L
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64
Query: 66 DSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWNPSTGFHKQILT 125
D G + + P S I S L C G + + + ++VWNP + K +
Sbjct: 65 DVEGKHPVITNKLDFPLDQSMIDESTCVL-HCDGTLCVTLKNHTLMVWNPFSKQFKIVPN 123
Query: 126 SCDFIIGSLYGFGYDNSTDDYFLVLIVLASMNAKIHAYSVKTNSWDYNHVHVLYMHLGCD 185
+ ++ GFGYD DDY +V + + H + +T SW + + Y
Sbjct: 124 PGIYQDSNILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWG-ESLRISYPDWHYR 182
Query: 186 YRHGVFLNNSLHWLVISKVTSLQVVIAYDLSETSLSEIPL 225
R G FL+ L+W+ + ++ + ++ ++LS ++PL
Sbjct: 183 DRRGTFLDQYLYWIAY-RSSADRFILCFNLSTHEYRKLPL 221
>gb|AAT38720.1| putative F-Box protein [Solanum demissum]
Length = 372
Score = 96.7 bits (239), Expect = 6e-19
Identities = 70/246 (28%), Positives = 123/246 (49%), Gaps = 33/246 (13%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPT----HRLLLR- 60
LPHE+I EILL++P +SLL+F CV K+W LIS +F K+H +L A HR++ +
Sbjct: 9 LPHEIIIEILLKVPPKSLLKFMCVSKTWLELISSAKFIKTHLELIANDKEYSHHRIIFQE 68
Query: 61 --CLFDL----DSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWN 114
C F + L + ++ P M + +GS G + L ++ + ++WN
Sbjct: 69 SACNFKVCCLPSMLNKERSTELFDIGSP-MENPTIYTWIVGSVNGLICLYSKIEETVLWN 127
Query: 115 PSTGFHKQILT-------SCDFIIGSLYGFGYDNSTDDYFLVLIVL-----ASMNAKIHA 162
P+ K++ T C + + YGFGYD + DDY +V+I S ++ ++
Sbjct: 128 PAVKKSKKLPTLGAKLRNGCSYYL--KYGFGYDETRDDYKVVVIQCIYEDSGSCDSVVNI 185
Query: 163 YSVKTNSW-DYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQV--VIAYDLSETS 219
YS+K +SW N ++ G F+N ++W + + V + + +I+ DL++ +
Sbjct: 186 YSLKADSWRTINKFQGNFL----VNSPGKFVNGKIYWALSADVDTFNMCNIISLDLADET 241
Query: 220 LSEIPL 225
+ L
Sbjct: 242 WRRLEL 247
>emb|CAB78299.1| putative protein [Arabidopsis thaliana] gi|4725955|emb|CAB41726.1|
putative protein [Arabidopsis thaliana]
gi|7487230|pir||T07648 hypothetical protein T1P17.150 -
Arabidopsis thaliana
Length = 408
Score = 87.4 bits (215), Expect = 4e-16
Identities = 77/279 (27%), Positives = 130/279 (45%), Gaps = 36/279 (12%)
Query: 5 TLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFD--LNAAPTHRLLLRCL 62
T+P +++ +I LRLP ++L+R + + K ++LI+DP F +SH L +LLR
Sbjct: 3 TIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 63 FDLDSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWNPST-GFHK 121
L S+ +S ++ P ++ GS G + L+N + V+NPST H+
Sbjct: 63 LRLYSVDLDSLDSVSDVEHPMKRGGPTEVF--GSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 122 QILTSCDFIIGS------LYGFGYDNSTDDYFLVLIVLASMNA----------KIHAYSV 165
+S D GS YG GYD+ +DDY +V +V +++ ++ +S+
Sbjct: 121 LPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSL 180
Query: 166 KTNSW--------DYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISK--VTSLQVVIAYDL 215
K NSW + Y HL +GV NSLHW++ + + + +++ +DL
Sbjct: 181 KKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDL 240
Query: 216 SETSLSEIPLLPELAEPVLKAECMPTFYQVRVLGGCLSL 254
+ EI PE + + + VL GCL L
Sbjct: 241 ALEEF-EIVRFPE----AVANGNVDIQMDIGVLDGCLCL 274
>ref|NP_192993.2| F-box family protein [Arabidopsis thaliana]
Length = 413
Score = 87.4 bits (215), Expect = 4e-16
Identities = 77/279 (27%), Positives = 130/279 (45%), Gaps = 36/279 (12%)
Query: 5 TLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFD--LNAAPTHRLLLRCL 62
T+P +++ +I LRLP ++L+R + + K ++LI+DP F +SH L +LLR
Sbjct: 3 TIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 63 FDLDSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWNPST-GFHK 121
L S+ +S ++ P ++ GS G + L+N + V+NPST H+
Sbjct: 63 LRLYSVDLDSLDSVSDVEHPMKRGGPTEVF--GSSNGLIGLSNSPTDLAVFNPSTRQIHR 120
Query: 122 QILTSCDFIIGS------LYGFGYDNSTDDYFLVLIVLASMNA----------KIHAYSV 165
+S D GS YG GYD+ +DDY +V +V +++ ++ +S+
Sbjct: 121 LPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSL 180
Query: 166 KTNSW--------DYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISK--VTSLQVVIAYDL 215
K NSW + Y HL +GV NSLHW++ + + + +++ +DL
Sbjct: 181 KKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDL 240
Query: 216 SETSLSEIPLLPELAEPVLKAECMPTFYQVRVLGGCLSL 254
+ EI PE + + + VL GCL L
Sbjct: 241 ALEEF-EIVRFPE----AVANGNVDIQMDIGVLDGCLCL 274
>dbj|BAB01455.1| unnamed protein product [Arabidopsis thaliana]
gi|15232463|ref|NP_188749.1| F-box family protein
[Arabidopsis thaliana]
Length = 367
Score = 79.7 bits (195), Expect = 8e-14
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 21/240 (8%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLF-- 63
LP +L+ EIL ++P SL RF+ C+ W L+ D FAK H+ +++ F
Sbjct: 3 LPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGSFAKKHYAYGPRQYPIVIMLIEFRV 62
Query: 64 -----DLDSLGDNSAVVTLNL-------PPPCMSCIQNSLYFLGSCRGFMLLANEYQRVI 111
DL + +N+ + L P S + + C G +L + +R++
Sbjct: 63 YLVSIDLHGINNNNGAPSAKLTGQFSLKDPLSNSSEEVDIRNAFHCDGLLLCCTKDRRLV 122
Query: 112 VWNPSTGFHKQILTSCDFIIGSLYGFGYDNSTDDYFLVLI--VLASMNAKIHAYSVKTNS 169
VWNP +G K I + LY GYDN + Y ++ + V + + Y ++S
Sbjct: 123 VWNPCSGETKWIQPRNSYKESDLYALGYDNRSSSYKILRMHPVGNPFHIESEVYDFASHS 182
Query: 170 WDYNHVHVLYMHLGCDYRHGVFLNNSLHWLVISK----VTSLQVVIAYDLSETSLSEIPL 225
W V + H+ + +G+ + + +W +SK + ++++D S +PL
Sbjct: 183 WRSVGVTTDF-HIQTNESYGMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRERFQCLPL 241
>emb|CAB79194.1| putative protein [Arabidopsis thaliana] gi|5738370|emb|CAB52813.1|
putative protein [Arabidopsis thaliana]
gi|15235636|ref|NP_193970.1| F-box family
protein-related [Arabidopsis thaliana]
gi|25407584|pir||D85256 hypothetical protein AT4g22390
[imported] - Arabidopsis thaliana
Length = 394
Score = 76.6 bits (187), Expect = 7e-13
Identities = 75/279 (26%), Positives = 124/279 (43%), Gaps = 39/279 (13%)
Query: 7 PHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHF--DLNAAPTHRLLLRCLFD 64
P +LI E+ LRL +L++ + + K F LI P+F SH L +LLR
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRL 64
Query: 65 LDSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWNPST-GFHKQI 123
L ++ +S ++P P + ++ GS G + L N + ++NPST H+
Sbjct: 65 LRTVELDSPENVSDIPHPLQAGGFTEVF--GSFNGVIGLCNSPVDLAIFNPSTRKIHRLP 122
Query: 124 LTSCDFIIGSL------YGFGYDNSTDDYFLVLIVLASMN---------AKIHAYSVKTN 168
+ DF + YG GYD+ DD+ +V IV + ++ +S+K N
Sbjct: 123 IEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKN 182
Query: 169 SW-------DYNHVHV-LYMHLGCDYRHGVFLNNSLHWLVISK--VTSLQVVIAYDLSET 218
SW ++ + + Y HL +GV +NN LHW++ + V + +I YDL+
Sbjct: 183 SWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASD 242
Query: 219 SLSEIPLLPELAEPVLKAECMPTFYQVRVLGGCLSL-CY 256
+ + EL + + VL GC+ L CY
Sbjct: 243 DIGVLSFPQEL--------YIEDNMDIGVLDGCVCLMCY 273
>gb|AAT38692.1| putative S haplotype-specific F-box protein [Solanum demissum]
Length = 319
Score = 75.1 bits (183), Expect = 2e-12
Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 28/186 (15%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLFDL 65
LPHE+I EILL LP +SLL+F CV KSW LIS +F K+H A R +F
Sbjct: 9 LPHEIIKEILLNLPPKSLLKFMCVSKSWLELISSAKFIKNHLKQTANDKEYSHHRIIFQ- 67
Query: 66 DSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWNPSTGFHKQILT 125
DS + VV+L PC++ + Y ++WNP+ K++ T
Sbjct: 68 DSAHNLRYVVSL----PCLTKNEAPSYLT-------------LETVLWNPAINKSKKLPT 110
Query: 126 -----SCDFIIGSLYGFGYDNSTDDY----FLVLIVLASMNAKIHAYSVKTNSWDYNHVH 176
F YGFGYD + DDY FLV + +N K++ +++ + +N +
Sbjct: 111 LGAKLRNGFSYYLKYGFGYDETRDDYKVGNFLVNSLGKFVNGKLY-WALSADVDTFNMCN 169
Query: 177 VLYMHL 182
++ + L
Sbjct: 170 IISLDL 175
>dbj|BAD08320.1| S-locus F-Box protein 1 [Prunus mume]
Length = 375
Score = 73.9 bits (180), Expect = 4e-12
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 9 ELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLFDLD-- 66
E++ +IL+RLP +SL+RF C CKSW LI F ++H D N + L CL +
Sbjct: 9 EILIDILVRLPAKSLVRFLCTCKSWSDLIGSSSFVRTHLDRNVTKHAHVYLLCLHHPNFE 68
Query: 67 ----------------SLGDNSAVVTLN-LPPPCMSCIQNSLYFLGSCRGFMLLANEYQR 109
SL N + L P S +Y GS G + +++E
Sbjct: 69 CAIDPNDPYIEEEVQWSLFSNETFEQCSKLSHPLGSTEHYVIY--GSSNGLVCISDEILN 126
Query: 110 ----VIVWNPSTGFHKQILTSCDFIIGS---LYGFGYDNSTDDYFLVLIVLASMNA-KIH 161
+ +WNPS K S + I + FG+ +DY V ++ + NA +
Sbjct: 127 FDSPIHIWNPSARKLKTPPISTNINIKFSCVVLQFGFHPGVNDYKAVRMMRTNKNALAVE 186
Query: 162 AYSVKTNSWDYNHVHVLYMHLGCDYRH--GVFLNNSLHWLV 200
YS++TNSW + + L C ++H G+F N + ++
Sbjct: 187 VYSLRTNSW--KMIEAIPPWLKCTWQHHKGIFFNGVAYHII 225
>dbj|BAC66622.1| F-box [Prunus mume]
Length = 376
Score = 73.9 bits (180), Expect = 4e-12
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 9 ELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCLFDLD-- 66
E++ +IL+RLP +SL+RF C CKSW LI F ++H D N + L CL +
Sbjct: 9 EILIDILVRLPAKSLVRFLCTCKSWSDLIGSSSFVRTHLDRNVTKHAHVYLLCLHHPNFE 68
Query: 67 ----------------SLGDNSAVVTLN-LPPPCMSCIQNSLYFLGSCRGFMLLANEYQR 109
SL N + L P S +Y GS G + +++E
Sbjct: 69 CAIDPNDPYIEEEVQWSLFSNETFEQCSKLSHPLGSTEHYVIY--GSSNGLVCISDEILN 126
Query: 110 ----VIVWNPSTGFHKQILTSCDFIIGS---LYGFGYDNSTDDYFLVLIVLASMNA-KIH 161
+ +WNPS K S + I + FG+ +DY V ++ + NA +
Sbjct: 127 FDSPIHIWNPSARKLKTPPISTNINIKFSCVVLQFGFHPGVNDYKAVRMMRTNKNALAVE 186
Query: 162 AYSVKTNSWDYNHVHVLYMHLGCDYRH--GVFLNNSLHWLV 200
YS++TNSW + + L C ++H G+F N + ++
Sbjct: 187 VYSLRTNSW--KMIEAIPPWLKCTWQHHKGIFFNGVAYHII 225
>dbj|BAB02037.1| unnamed protein product [Arabidopsis thaliana]
Length = 374
Score = 72.4 bits (176), Expect = 1e-11
Identities = 58/211 (27%), Positives = 95/211 (44%), Gaps = 19/211 (9%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCL--- 62
L +L+ +IL R+P SL+R + CK W +++D +F K HFD +LLR L
Sbjct: 12 LTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTAEKEYLDMLLRSLRVS 71
Query: 63 ---FDLDSLGDN-----SAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWN 114
+L L DN LNL + + + + C G +L N ++VWN
Sbjct: 72 SMSVNLHGLHDNIDPSIELKRELNLKGLLCNSGKVESFEVFHCNGLLLFTNT-STIVVWN 130
Query: 115 PSTGFHKQILTSCDFIIGSLYGFGYDNST--DDYFLVLIVLASMNAKIHAYSVKTNSWD- 171
P TG K I T Y GY+N DY ++ + N ++ Y ++SW
Sbjct: 131 PCTGQTKWIQTESANTRYHKYALGYENKNLCRDYKILRFLDDGTNFELEIYEFNSSSWRV 190
Query: 172 YNHVHVLY-MHLGCDYRHGVFLNNSLHWLVI 201
+ V + + + +G G+ + + +W+VI
Sbjct: 191 LDSVEIDFELDIG---SQGMSVKGNTYWIVI 218
>ref|NP_188375.1| F-box family protein [Arabidopsis thaliana]
Length = 373
Score = 72.4 bits (176), Expect = 1e-11
Identities = 58/211 (27%), Positives = 95/211 (44%), Gaps = 19/211 (9%)
Query: 6 LPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCL--- 62
L +L+ +IL R+P SL+R + CK W +++D +F K HFD +LLR L
Sbjct: 11 LTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTAEKEYLDMLLRSLRVS 70
Query: 63 ---FDLDSLGDN-----SAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVWN 114
+L L DN LNL + + + + C G +L N ++VWN
Sbjct: 71 SMSVNLHGLHDNIDPSIELKRELNLKGLLCNSGKVESFEVFHCNGLLLFTNT-STIVVWN 129
Query: 115 PSTGFHKQILTSCDFIIGSLYGFGYDNST--DDYFLVLIVLASMNAKIHAYSVKTNSWD- 171
P TG K I T Y GY+N DY ++ + N ++ Y ++SW
Sbjct: 130 PCTGQTKWIQTESANTRYHKYALGYENKNLCRDYKILRFLDDGTNFELEIYEFNSSSWRV 189
Query: 172 YNHVHVLY-MHLGCDYRHGVFLNNSLHWLVI 201
+ V + + + +G G+ + + +W+VI
Sbjct: 190 LDSVEIDFELDIG---SQGMSVKGNTYWIVI 217
>gb|AAM15177.1| hypothetical protein [Arabidopsis thaliana]
gi|3860278|gb|AAC73046.1| hypothetical protein
[Arabidopsis thaliana] gi|18401449|ref|NP_565653.1|
F-box family protein [Arabidopsis thaliana]
gi|25345718|pir||H84673 hypothetical protein At2g27520
[imported] - Arabidopsis thaliana
Length = 347
Score = 72.0 bits (175), Expect = 2e-11
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 1 MEKLTLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLR 60
M +L LP +L+ EIL RLP SL R + CK W L DP+F F AA +L+
Sbjct: 1 MVRLDLPWDLVDEILSRLPATSLGRLRFTCKRWNALFKDPEFITKQFH-KAAKQDLVLML 59
Query: 61 CLFDLDSLGDNSAVVTLNLPPPCMSCIQNSLYFLGSCRGFMLLANE---YQRVIVWNPST 117
F + S+ N + N+ + + C G +L + E +++V NP T
Sbjct: 60 SNFGVYSMSTNLKEIPNNI----------EIAQVFHCNGLLLCSTEEGNKTKLVVVNPCT 109
Query: 118 GFHKQILTSCDFIIGSLYGFGYDN-----STDDYFLVLIVLASMNAKIHAYSVKTNSWDY 172
G + I D+ GY N S D Y ++ I +I + +K+NSW
Sbjct: 110 GQTRWIEPRTDYNYNHDIALGYGNNSTKKSYDSYKILRITYGCKLVEI--FELKSNSW-- 165
Query: 173 NHVHVLYMHLGCDYRHGVFLNNSLHWLVISKVTSLQVVIAYDLSETSLSEIPL 225
+ ++ ++ Y GV + +WL +K ++++D + + +PL
Sbjct: 166 RVLSKVHPNVEKHYYGGVSFKGNTYWLSYTKFN----ILSFDFTTETFRSVPL 214
>ref|NP_176417.1| F-box family protein [Arabidopsis thaliana]
Length = 383
Score = 72.0 bits (175), Expect = 2e-11
Identities = 62/211 (29%), Positives = 89/211 (41%), Gaps = 14/211 (6%)
Query: 5 TLPHELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLR---- 60
+LP +L+ +IL R+P SL R + CK W +L +D F K HFD L+LR
Sbjct: 11 SLPWDLVEDILARVPATSLKRLRSTCKQWNFLFNDQIFTKMHFDKAEKQFLVLILRLYTV 70
Query: 61 CLFDLDSLG-----DNSAVV--TLNLPPPCMSCIQNSLYFLGSCRGFMLLANEYQRVIVW 113
C LD G D S V L+L P S + + + C G +LL ++VW
Sbjct: 71 CSMSLDLRGLHDNIDPSIEVKGELSLIDPHCSSRKTFVSKVFHCNG-LLLCTTMTGLVVW 129
Query: 114 NPSTGFHKQILTSCDFIIGSLYGFGYDNSTDDY-FLVLIVLASMNAKIHAYSVKTNSWDY 172
NP T + I T Y GY N Y + ++ L + + Y V +NSW
Sbjct: 130 NPCTDQTRWIKTEVPHNRNDKYALGYGNYKSCYNYKIMKFLDLESFDLEIYEVNSNSWRV 189
Query: 173 NHVHVLYMHLGCDYRHGVFLNNSLHWLVISK 203
+ D GV L + +W+ K
Sbjct: 190 LGTVTPDFTIPLD-AEGVSLRGNSYWIASHK 219
>gb|AAT72121.1| SFB3 [Prunus avium]
Length = 376
Score = 71.6 bits (174), Expect = 2e-11
Identities = 57/224 (25%), Positives = 101/224 (44%), Gaps = 37/224 (16%)
Query: 8 HELIFEILLRLPVRSLLRFKCVCKSWFYLISDPQFAKSHFDLNAAPTHRLLLRCL----- 62
+E++ +IL+RLP +SL+RF C CKSW LI F ++H N + L CL
Sbjct: 8 NEILIDILVRLPAKSLIRFLCTCKSWSDLIGSSSFVRTHLHRNVTKHAHVYLLCLHHPQF 67
Query: 63 ---------FDLDSL-----GDNSAVVTLNLPPPCMSCIQNSLYF--LGSCRGFMLLANE 106
+D++ L + NL P ++N+ +F GS G + +++E
Sbjct: 68 ERQNDNDDPYDIEELQWSLFSNEKFEQFSNLSHP----LENTEHFRIYGSSNGLVCMSDE 123
Query: 107 Y----QRVIVWNPSTGFHKQILTSCDFIIGSLY---GFGYDNSTDDYFLVLIVLASMNA- 158
+ +WNPS + + S + + + FG+ +DY V ++ + A
Sbjct: 124 ILNFDSPIQIWNPSVRKFRTLPMSTNINMKFSHVSLQFGFHPGVNDYKAVRMMHTNKGAL 183
Query: 159 KIHAYSVKTNSWDYNHVHVLYMHLGCDYRH--GVFLNNSLHWLV 200
+ YS+KT+ W + V+ L C ++H G F N + ++
Sbjct: 184 AVEVYSLKTDCW--KMIEVIPPWLKCTWKHHKGTFFNGVAYHII 225
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.142 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,247,850
Number of Sequences: 2540612
Number of extensions: 19403999
Number of successful extensions: 49530
Number of sequences better than 10.0: 524
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 48814
Number of HSP's gapped (non-prelim): 623
length of query: 268
length of database: 863,360,394
effective HSP length: 126
effective length of query: 142
effective length of database: 543,243,282
effective search space: 77140546044
effective search space used: 77140546044
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0476a.5