BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.9
(139 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium prat... 234 3e-61
emb|CAA65231.1| PSII polypeptide [Lycopersicon esculentum] gi|39... 227 4e-59
emb|CAA28450.1| ST-LS1 protein [Solanum tuberosum] gi|131399|sp|... 227 4e-59
emb|CAA27989.1| unnamed protein product [Solanum tuberosum] 224 3e-58
pir||S00409 photosystem II 10K protein precursor - spinach gi|13... 219 1e-56
emb|CAA49693.1| NtpII10 [Nicotiana tabacum] gi|322764|pir||S3202... 219 1e-56
emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon e... 214 3e-55
gb|AAN60205.1| photosystem II 10 kDa protein [Xerophyta humilis] 213 8e-55
gb|AAM20194.1| putative photosystem II polypeptide [Arabidopsis ... 209 2e-53
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 207 6e-53
gb|AAO32060.1| photosystem II 10kDa polypeptide [Brassica rapa s... 206 7e-53
ref|XP_480562.1| putative photosystem II 10K protein [Oryza sati... 184 5e-46
gb|AAB46718.1| photosystem II 10 kDa polypeptide [Oryza sativa] ... 181 4e-45
ref|XP_476620.1| putative Photosystem II 10 kDa polypeptide, chl... 165 2e-40
ref|XP_476619.1| putative photosystem II 10 kD polypeptide [Oryz... 163 9e-40
emb|CAA66373.1| 10kD PSII protein [Hordeum vulgare] gi|7443193|p... 162 2e-39
gb|AAP72269.1| photosystem II polypeptide [Triticum aestivum] 142 2e-33
gb|AAF78511.1| polypeptide precursor of photosystem II [Pyrus py... 120 9e-27
dbj|BAA78585.1| hypothetical protein [Chlamydomonas sp. HS-5] 87 7e-17
gb|AAP79212.1| photosystem II protein PSII10 [Bigelowiella natans] 84 7e-16
>gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium pratense]
Length = 136
Score = 234 bits (598), Expect = 3e-61
Identities = 119/139 (85%), Positives = 126/139 (90%), Gaps = 3/139 (2%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASVSLKP F +EKSSVRGLP+LSR FRVVASG KKIKTDTPYGTGGGM+L
Sbjct: 1 MASSVMASVSLKPTPFMVEKSSVRGLPNLSRP---FRVVASGVKKIKTDTPYGTGGGMDL 57
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
NG+DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 58 PNGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTL 117
Query: 121 LGLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 118 AGLLAGGALLVYNTSALSQ 136
>emb|CAA65231.1| PSII polypeptide [Lycopersicon esculentum]
gi|3914471|sp|Q40163|PSBR_LYCES Photosystem II 10 kDa
polypeptide, chloroplast precursor
Length = 138
Score = 227 bits (579), Expect = 4e-59
Identities = 112/139 (80%), Positives = 128/139 (91%), Gaps = 1/139 (0%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MAS+VM+S+SLKP F+LEK SV+GLPSL+RSS+SF+VVASG KK+KTD PYG G M L
Sbjct: 1 MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 59
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+GVDASGRKP+GKGVYQYVDKYGANVDGYSPIY+T +WSP+GDVY GGTTGLAIWAVTL
Sbjct: 60 RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
Query: 121 LGLLAGGALLVYNTSALSQ 139
LG+LAGGALLVYNTSAL+Q
Sbjct: 120 LGILAGGALLVYNTSALAQ 138
>emb|CAA28450.1| ST-LS1 protein [Solanum tuberosum] gi|131399|sp|P06183|PSBR_SOLTU
Photosystem II 10 kDa polypeptide, chloroplast precursor
(Light inducible tissue-specific ST-LS1 protein)
gi|82277|pir||S00411 photosystem II 10K protein
precursor - potato
Length = 138
Score = 227 bits (579), Expect = 4e-59
Identities = 111/139 (79%), Positives = 129/139 (91%), Gaps = 1/139 (0%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MAS+VM+S+SLKP F+LEK+SV+GLPSL+RSS+SF+VVASG KK+KTD PYG G M L
Sbjct: 1 MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 59
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+GVDASGRKP+GKGVYQYVDKYGANVDGYSPIY+T +WSP+GDVY GGTTGLAIWAVTL
Sbjct: 60 RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
Query: 121 LGLLAGGALLVYNTSALSQ 139
+G+LAGGALLVYNTSAL+Q
Sbjct: 120 VGILAGGALLVYNTSALAQ 138
>emb|CAA27989.1| unnamed protein product [Solanum tuberosum]
Length = 138
Score = 224 bits (571), Expect = 3e-58
Identities = 109/139 (78%), Positives = 128/139 (91%), Gaps = 1/139 (0%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MAS+VM+S+SLKP F+LEK+SV+GLPSL+RSS+ F+VVASG KK+KTD PYG G M L
Sbjct: 1 MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSPFKVVASGVKKLKTDKPYGINGSMAL 59
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+G+DASGRKP+GKGVYQYVDKYGANVDGYSPIY+T +WSP+GDVY GGTTGLAIWAVTL
Sbjct: 60 RDGLDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
Query: 121 LGLLAGGALLVYNTSALSQ 139
+G+LAGGALLVYNTSAL+Q
Sbjct: 120 VGILAGGALLVYNTSALAQ 138
>pir||S00409 photosystem II 10K protein precursor - spinach
gi|131400|sp|P10690|PSBR_SPIOL Photosystem II 10 kDa
polypeptide, chloroplast precursor
gi|170127|gb|AAA34037.1| 10kd polypeptide precursor
Length = 140
Score = 219 bits (558), Expect = 1e-56
Identities = 109/140 (77%), Positives = 125/140 (88%), Gaps = 1/140 (0%)
Query: 1 MASSVMASVSLKPAGFSLE-KSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
MA+SVM+S+SLKP+ F ++ KS+V+GLPSLSRSSASF V ASG KKIK D P G GGGM
Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60
Query: 60 LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
LR+GVD+SGRKP GKGVYQ+VDKYGANVDGYSPIY+ ++W+PTGDVYAGGTTGL IWAVT
Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
Query: 120 LLGLLAGGALLVYNTSALSQ 139
L GLLAGGALLVYNTSAL+Q
Sbjct: 121 LAGLLAGGALLVYNTSALAQ 140
>emb|CAA49693.1| NtpII10 [Nicotiana tabacum] gi|322764|pir||S32021 photosystem II
10K protein - common tobacco
gi|3914472|sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa
polypeptide, chloroplast precursor (PII10)
Length = 136
Score = 219 bits (558), Expect = 1e-56
Identities = 108/139 (77%), Positives = 126/139 (89%), Gaps = 3/139 (2%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MAS+VM SLKPA FS+EK++V+GLPSL+RSS+SFRV ASG KK+KTD PYG G M+L
Sbjct: 1 MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSL 57
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+GVDASGRK +GKGVYQ+VDKYGANVDGYSPIY+T DWSP+GDVY GGTTGLAIWAVTL
Sbjct: 58 RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 117
Query: 121 LGLLAGGALLVYNTSALSQ 139
+G+LAGGALLV+NTSAL+Q
Sbjct: 118 VGILAGGALLVFNTSALAQ 136
>emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon esculentum]
Length = 130
Score = 214 bits (546), Expect = 3e-55
Identities = 105/131 (80%), Positives = 119/131 (90%), Gaps = 1/131 (0%)
Query: 9 VSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASG 68
+SLKP F+LEK SV+GLPSL+RSS+SF+VVA G KK+KTD PYG G M LR+GVDASG
Sbjct: 1 LSLKPT-FTLEKISVKGLPSLTRSSSSFKVVARGVKKLKTDKPYGINGSMALRDGVDASG 59
Query: 69 RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGA 128
RKP+GKGVYQYVDKYGANVDGYSPIY+T +WSP+GDVY GGTTGLAIWAVTLLG+LAGGA
Sbjct: 60 RKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGA 119
Query: 129 LLVYNTSALSQ 139
LLVYNTSAL+Q
Sbjct: 120 LLVYNTSALAQ 130
>gb|AAN60205.1| photosystem II 10 kDa protein [Xerophyta humilis]
Length = 139
Score = 213 bits (542), Expect = 8e-55
Identities = 103/139 (74%), Positives = 121/139 (86%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MA+S+M+S++LKPA E+SSV+GLPSL RSS+SF+V ASGGKKIKT TPYG GGGMNL
Sbjct: 1 MAASMMSSLALKPATPVFERSSVKGLPSLVRSSSSFKVQASGGKKIKTATPYGPGGGMNL 60
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
G+DASGRK +GKGVYQ+VDKYGANVDGYSPIY +WSP+GDVY GGTTGL +WA+TL
Sbjct: 61 PAGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYSPDEWSPSGDVYVGGTTGLIVWAITL 120
Query: 121 LGLLAGGALLVYNTSALSQ 139
GLL GGALLVY+TSAL+Q
Sbjct: 121 AGLLGGGALLVYSTSALAQ 139
>gb|AAM20194.1| putative photosystem II polypeptide [Arabidopsis thaliana]
gi|17979203|gb|AAL49840.1| putative photosystem II
polypeptide protein [Arabidopsis thaliana]
gi|21536748|gb|AAM61080.1| photosystem II polypeptide,
putative [Arabidopsis thaliana]
gi|15219268|ref|NP_178025.1| photosystem II 10 kDa
polypeptide [Arabidopsis thaliana]
gi|16447|emb|CAA39441.1| photosystem II 10 kDa
polypeptide [Arabidopsis thaliana]
gi|131398|sp|P27202|PSBR_ARATH Photosystem II 10 kDa
polypeptide, chloroplast precursor
gi|3152571|gb|AAC17052.1| Match to photosystem II 10kDa
polypeptide gb|X55970. ESTs gb|Z17693, gb|N37616,
gb|T41858, gb|T88021, gb|R37531, gb|T04679, gb|N37520,
gb|N64965, gb|Z17592 and gb|N65338, gb|N37466 and
gb|T45400 come from this gene. [Arabidopsis thaliana]
Length = 140
Score = 209 bits (531), Expect = 2e-53
Identities = 102/140 (72%), Positives = 123/140 (87%), Gaps = 1/140 (0%)
Query: 1 MASSVM-ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
MA+SVM +SV+LKPAGF++EK++ RGLPSL+R+ SF++VASG KKIKTD P+G G M+
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60
Query: 60 LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
LR+GVDASGRK +G GVY+YVDKYGANVDGYSPIY+ +WS +GDVY GG TGLAIWAVT
Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120
Query: 120 LLGLLAGGALLVYNTSALSQ 139
L G+LAGGALLVYNTSAL+Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplast precursor
gi|967968|gb|AAA74957.1| photosystem II 10kDa
polypeptide
Length = 141
Score = 207 bits (526), Expect = 6e-53
Identities = 104/141 (73%), Positives = 124/141 (87%), Gaps = 2/141 (1%)
Query: 1 MASSVM-ASVSLKPAGFSLEKSSVRGLPSLSRSS-ASFRVVASGGKKIKTDTPYGTGGGM 58
MA+SVM +SV+LKPAGF++EK S RGLPSL+R+S +SFR+VASG KKIKTD P+G G M
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60
Query: 59 NLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAV 118
+LR+GVDASGRK +G GVY++VDKYGANVDGYSPIY+ +WS +GDVY GG TGLAIWAV
Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120
Query: 119 TLLGLLAGGALLVYNTSALSQ 139
TL G+LAGGALLVYNTSAL+Q
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141
>gb|AAO32060.1| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]
Length = 137
Score = 206 bits (525), Expect = 7e-53
Identities = 98/137 (71%), Positives = 121/137 (87%)
Query: 3 SSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRN 62
S +++SV+LKPAGF++EK SVRGLPSL+R+ +SF++VASG KKIKTD P+G G M+LR+
Sbjct: 1 SVMLSSVTLKPAGFTVEKMSVRGLPSLTRAPSSFKIVASGVKKIKTDKPFGVNGSMDLRD 60
Query: 63 GVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLG 122
G+DASGRK +G GVY++VDKYGANVDGYSPIY+ +WS +GDVY GG TGLAIWAVTL G
Sbjct: 61 GLDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAG 120
Query: 123 LLAGGALLVYNTSALSQ 139
+LAGGALLVYNTSAL+Q
Sbjct: 121 ILAGGALLVYNTSALAQ 137
>ref|XP_480562.1| putative photosystem II 10K protein [Oryza sativa (japonica
cultivar-group)] gi|51964758|ref|XP_507163.1| PREDICTED
P0556A11.19 gene product [Oryza sativa (japonica
cultivar-group)] gi|38636958|dbj|BAD03219.1| putative
photosystem II 10K protein [Oryza sativa (japonica
cultivar-group)]
Length = 130
Score = 184 bits (466), Expect = 5e-46
Identities = 92/138 (66%), Positives = 107/138 (76%), Gaps = 9/138 (6%)
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MA+S++ S + PA +GLPS+SR +SF +V SGGKKIKTD PYG GGGM++
Sbjct: 1 MATSMITSPLVAPA-------RAKGLPSISRRGSSFAIVCSGGKKIKTDKPYGIGGGMSV 53
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
+DASGRK GKGVYQ+VDKYGANVDGYSPIY ++WSPTGD Y GGTTGL IWAVTL
Sbjct: 54 --DIDASGRKSTGKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTL 111
Query: 121 LGLLAGGALLVYNTSALS 138
GLL GGALLVYNTSAL+
Sbjct: 112 AGLLGGGALLVYNTSALA 129
>gb|AAB46718.1| photosystem II 10 kDa polypeptide [Oryza sativa]
gi|7443194|pir||T04177 photosystem II 10K protein - rice
Length = 126
Score = 181 bits (458), Expect = 4e-45
Identities = 86/115 (74%), Positives = 97/115 (83%), Gaps = 2/115 (1%)
Query: 24 RGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKY 83
+GLPS+SR +SF +V SGGKKIKTD PYG GGGM++ +DASGRK GKGVYQ+VDKY
Sbjct: 13 KGLPSISRRGSSFAIVCSGGKKIKTDKPYGIGGGMSV--DIDASGRKSTGKGVYQFVDKY 70
Query: 84 GANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALS 138
GANVDGYSPIY ++WSPTGD Y GGTTGL IWAVTL GLL GGALLVYNTSAL+
Sbjct: 71 GANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125
>ref|XP_476620.1| putative Photosystem II 10 kDa polypeptide, chloroplast precursor
[Oryza sativa (japonica cultivar-group)]
gi|34393640|dbj|BAC83336.1| putative Photosystem II 10
kDa polypeptide, chloroplast precursor [Oryza sativa
(japonica cultivar-group)]
Length = 134
Score = 165 bits (417), Expect = 2e-40
Identities = 83/134 (61%), Positives = 103/134 (75%), Gaps = 2/134 (1%)
Query: 6 MASVSLKPAGFS-LEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGV 64
MAS +LKP+ LE++ +R + SR S FRV+A KKI+T P+G GGG NL++GV
Sbjct: 1 MASCALKPSPSPFLEQTRIRAIQPSSRPSL-FRVMAKKAKKIQTSQPFGPGGGPNLKDGV 59
Query: 65 DASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLL 124
DASGR +GKGVYQ+ KYGANVDGYSPIY+ ++WSP+GDVY GG TGL +WAVTL G+L
Sbjct: 60 DASGRPIKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTLSGIL 119
Query: 125 AGGALLVYNTSALS 138
GALLVYNTSAL+
Sbjct: 120 LAGALLVYNTSALA 133
>ref|XP_476619.1| putative photosystem II 10 kD polypeptide [Oryza sativa (japonica
cultivar-group)] gi|22831113|dbj|BAC15975.1| putative
photosystem II 10 kD polypeptide [Oryza sativa (japonica
cultivar-group)] gi|50509251|dbj|BAD30534.1| putative
photosystem II 10 kD polypeptide [Oryza sativa (japonica
cultivar-group)]
Length = 137
Score = 163 bits (412), Expect = 9e-40
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 1 MASSVMASVSLKPAGFSL-EKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
MA+SVMAS++LKP+ L E+S +RG +++R S +VA KKI+T PYG GG+
Sbjct: 1 MAASVMASLALKPSASPLLERSKLRGKGTMARPSLI--IVAKKAKKIQTSQPYGPAGGVV 58
Query: 60 LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
+ GVDASGR +GKG+YQ+ +KYGANVDGYSPIY ++WS TGDVY GG GL +WA+T
Sbjct: 59 FKEGVDASGRVAKGKGLYQFSNKYGANVDGYSPIYTPEEWSSTGDVYVGGKAGLLLWAIT 118
Query: 120 LLGLLAGGALLVYNTSALS 138
L G+L GGA+LVYNTSAL+
Sbjct: 119 LAGILVGGAILVYNTSALA 137
>emb|CAA66373.1| 10kD PSII protein [Hordeum vulgare] gi|7443193|pir||T06173
photosystem II 10K protein precursor - barley
gi|3914470|sp|Q40070|PSBR_HORVU Photosystem II 10 kDa
polypeptide, chloroplast precursor
Length = 138
Score = 162 bits (410), Expect = 2e-39
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 1 MASSVMASVSLKPAGFSL-EKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
M++ VMAS++LKP+ L ++S + G+ +R S +VA KK++T PYG GGG+
Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLV--IVAKKAKKVQTAQPYGPGGGVA 58
Query: 60 LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
+ GVDASGR +GKGVYQ+ DKYGANVDGYSPIY ++WSP+GDVY GG TGL +WAVT
Sbjct: 59 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
Query: 120 LLGLLAGGALLVYNTSALS 138
L G+L GGALLVY+TSAL+
Sbjct: 119 LAGILLGGALLVYSTSALA 137
>gb|AAP72269.1| photosystem II polypeptide [Triticum aestivum]
Length = 99
Score = 142 bits (358), Expect = 2e-33
Identities = 69/97 (71%), Positives = 78/97 (80%), Gaps = 2/97 (2%)
Query: 42 GGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSP 101
GGKKIK D P G GGG+ + +DA+GRK KGVYQ+VDKYGANVDGYSPIY ++WS
Sbjct: 4 GGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSE 61
Query: 102 TGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALS 138
+GD YAGGTTGL IWAVTL GLL GG LLVYNTSAL+
Sbjct: 62 SGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98
>gb|AAF78511.1| polypeptide precursor of photosystem II [Pyrus pyrifolia]
Length = 82
Score = 120 bits (300), Expect = 9e-27
Identities = 61/82 (74%), Positives = 74/82 (89%), Gaps = 1/82 (1%)
Query: 1 MASSVM-ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
MA+SVM +SVSLKP+ F+++K +VRGLPSLSRSSASF+V ASGGKKI+T TPYG GGM+
Sbjct: 1 MAASVMTSSVSLKPSPFTVDKPAVRGLPSLSRSSASFKVQASGGKKIRTATPYGINGGMD 60
Query: 60 LRNGVDASGRKPRGKGVYQYVD 81
LR+GVDASGRK +GKGVYQ+VD
Sbjct: 61 LRDGVDASGRKGKGKGVYQFVD 82
>dbj|BAA78585.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 128
Score = 87.4 bits (215), Expect = 7e-17
Identities = 54/122 (44%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 30 SRSSASFRVVASGGKKIKT--------DTPY------GTGGGMNLRNGVDASGRKPRGKG 75
+R S + VASGG K+ D P G M +N VD GRK +G G
Sbjct: 5 ARVRKSLKPVASGGGKVDITKAGLEGIDDPTVQQNLKGRSRYMKDKNWVDPQGRKGKGYG 64
Query: 76 VYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTS 135
VY++ DKYGANVDGYSPIY W+ +G Y GT GL WA +L LL G LV +TS
Sbjct: 65 VYRFEDKYGANVDGYSPIYTADQWTESGASYKLGTKGLIAWAGLVLVLLGVGVNLVISTS 124
Query: 136 AL 137
L
Sbjct: 125 QL 126
>gb|AAP79212.1| photosystem II protein PSII10 [Bigelowiella natans]
Length = 197
Score = 84.0 bits (206), Expect = 7e-16
Identities = 43/85 (50%), Positives = 53/85 (61%)
Query: 53 GTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTG 112
G M+ +N VD GRK RG GVY++ KYGANVDGYSPIY WS +G+ Y GT
Sbjct: 113 GRSRAMSDKNWVDPQGRKGRGYGVYRFQKKYGANVDGYSPIYTPDIWSESGNSYKLGTNA 172
Query: 113 LAIWAVTLLGLLAGGALLVYNTSAL 137
L W V ++ LL GA L+ +TS L
Sbjct: 173 LIAWLVLVVTLLGIGANLIISTSQL 197
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.312 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,686,578
Number of Sequences: 2540612
Number of extensions: 12469125
Number of successful extensions: 30441
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 30385
Number of HSP's gapped (non-prelim): 65
length of query: 139
length of database: 863,360,394
effective HSP length: 115
effective length of query: 24
effective length of database: 571,190,014
effective search space: 13708560336
effective search space used: 13708560336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0403.9