BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.8
(117 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 79 3e-14
gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Ar... 75 4e-13
ref|NP_174828.1| AT hook motif-containing protein-related [Arabi... 75 4e-13
gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultiva... 75 4e-13
gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-... 75 4e-13
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 75 4e-13
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 75 4e-13
ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana] gi|... 74 8e-13
emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar... 74 8e-13
ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana] 74 8e-13
emb|CAB81576.1| putative protein [Arabidopsis thaliana] gi|15229... 74 1e-12
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 73 1e-12
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 73 1e-12
gb|AAF06079.1| F28J9.3 [Arabidopsis thaliana] gi|25403499|pir||F... 73 1e-12
ref|NP_680269.1| hypothetical protein [Arabidopsis thaliana] 72 2e-12
gb|AAD20107.1| putative helicase [Arabidopsis thaliana] gi|25353... 71 5e-12
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 71 5e-12
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 71 5e-12
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 71 5e-12
emb|CAE76063.1| B1340F09.1 [Oryza sativa (japonica cultivar-group)] 71 7e-12
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 79.0 bits (193), Expect = 3e-14
Identities = 38/73 (52%), Positives = 49/73 (67%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
++VT L +I A V G+ G Y+PR+ LT +D +PF+F RRQF V CF MTIN
Sbjct: 1179 LQVTQLGDRVIEAKVLTGSNAGNKVYLPRLVLTPADFRIPFRFQRRQFPVVPCFGMTINK 1238
Query: 105 NQGQSLSHVSLYL 117
+QGQSLSHV +YL
Sbjct: 1239 SQGQSLSHVGIYL 1251
>gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 75.1 bits (183), Expect = 4e-13
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+++G IP ++LT +D+ LPFK RRQF +++ FAMTIN
Sbjct: 606 LQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINK 665
Query: 105 NQGQSLSHVSLYL 117
+QGQSL H+ LYL
Sbjct: 666 SQGQSLEHIGLYL 678
>ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 75.1 bits (183), Expect = 4e-13
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+++G IP ++LT +D+ LPFK RRQF +++ FAMTIN
Sbjct: 1555 LQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINK 1614
Query: 105 NQGQSLSHVSLYL 117
+QGQSL H+ LYL
Sbjct: 1615 SQGQSLEHIGLYL 1627
>gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1634
Score = 75.1 bits (183), Expect = 4e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
M +T L + I A + G +G+ YIPRI +T ++SG PF RRQ+ +++CFAMTIN
Sbjct: 1515 MTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQYPLSVCFAMTINK 1574
Query: 105 NQGQSLSHVSLYL 117
+QGQSL+ V LYL
Sbjct: 1575 SQGQSLNMVGLYL 1587
>gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1525
Score = 75.1 bits (183), Expect = 4e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
M +T L + I A + G +G+ YIPRI +T ++SG PF RRQ+ +++CFAMTIN
Sbjct: 1406 MTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQYPLSVCFAMTINK 1465
Query: 105 NQGQSLSHVSLYL 117
+QGQSL+ V LYL
Sbjct: 1466 SQGQSLNMVGLYL 1478
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 75.1 bits (183), Expect = 4e-13
Identities = 35/73 (47%), Positives = 51/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+++G+ YIP I++T SD+ LPFK RRQF +++ F MTIN
Sbjct: 1306 LQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFVMTINK 1365
Query: 105 NQGQSLSHVSLYL 117
+QGQSL V LYL
Sbjct: 1366 SQGQSLEQVGLYL 1378
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 75.1 bits (183), Expect = 4e-13
Identities = 35/73 (47%), Positives = 51/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+++G+ YIP I++T SD+ LPFK RRQF +++ F MTIN
Sbjct: 1297 LQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFVMTINK 1356
Query: 105 NQGQSLSHVSLYL 117
+QGQSL V LYL
Sbjct: 1357 SQGQSLEQVGLYL 1369
>ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana]
gi|12324645|gb|AAG52281.1| hypothetical protein;
100703-104276 [Arabidopsis thaliana]
Length = 996
Score = 73.9 bits (180), Expect = 8e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
++VT + +I A GN++GK IPR+ +T SD+ LPFK RRQF +++ FAMTIN
Sbjct: 898 LQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRRQFPLSVAFAMTINK 957
Query: 105 NQGQSLSHVSLYL 117
+QGQ+L V LYL
Sbjct: 958 SQGQTLESVGLYL 970
>emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar-group)]
Length = 2052
Score = 73.9 bits (180), Expect = 8e-13
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 58 TVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQGQSLSHVSLYL 117
T+ G+K+G+ ++PRISL +++S PF RRQF V +C+AMTIN +QGQ+LSHV +YL
Sbjct: 1309 TILTGSKIGEIVFVPRISLNTTNSKWPFTLQRRQFPVRVCYAMTINKSQGQTLSHVGVYL 1368
>ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana]
Length = 1231
Score = 73.9 bits (180), Expect = 8e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
++VT + +I A GN++GK IPR+ +T SD+ LPFK RRQF +++ FAMTIN
Sbjct: 1114 LQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRRQFPLSVAFAMTINK 1173
Query: 105 NQGQSLSHVSLYL 117
+QGQ+L V LYL
Sbjct: 1174 SQGQTLESVGLYL 1186
>emb|CAB81576.1| putative protein [Arabidopsis thaliana]
gi|15229268|ref|NP_189921.1| helicase-related
[Arabidopsis thaliana] gi|11358366|pir||T47377
hypothetical protein T5C2.50 - Arabidopsis thaliana
Length = 830
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/73 (47%), Positives = 50/73 (67%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
++VT + +I A GN++GK IPR+ +T SD+ LPFK R+QF +++ FAMTIN
Sbjct: 616 LQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRKQFALSVAFAMTINK 675
Query: 105 NQGQSLSHVSLYL 117
+QGQ+L V LYL
Sbjct: 676 SQGQTLESVGLYL 688
Score = 71.2 bits (173), Expect = 5e-12
Identities = 34/73 (46%), Positives = 49/73 (66%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
++VT + +I A GN++GK IPR+ +T D+ LPFK R+QF +++ FAMTIN
Sbjct: 732 LQVTQMADTVIQARFITGNRVGKIVLIPRMLITPLDTRLPFKMRRKQFALSVAFAMTINK 791
Query: 105 NQGQSLSHVSLYL 117
+QGQ+L V LYL
Sbjct: 792 SQGQTLESVGLYL 804
Score = 31.6 bits (70), Expect = 4.7
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 98 FAMTINNNQGQSLSHVSLYL 117
FAMTIN +QGQ+L V LYL
Sbjct: 553 FAMTINKSQGQTLESVGLYL 572
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 73.2 bits (178), Expect = 1e-12
Identities = 35/73 (47%), Positives = 50/73 (67%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+ +G IP ++LT +D+ LPFK RRQF +++ FAMTIN
Sbjct: 950 LQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINT 1009
Query: 105 NQGQSLSHVSLYL 117
+QGQSL HV LYL
Sbjct: 1010 SQGQSLEHVGLYL 1022
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 73.2 bits (178), Expect = 1e-12
Identities = 35/73 (47%), Positives = 50/73 (67%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L ++ A V G+ +G IP ++LT +D+ LPFK RRQF +++ FAMTIN
Sbjct: 910 LQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINT 969
Query: 105 NQGQSLSHVSLYL 117
+QGQSL HV LYL
Sbjct: 970 SQGQSLEHVGLYL 982
>gb|AAF06079.1| F28J9.3 [Arabidopsis thaliana] gi|25403499|pir||F86486 protein
F28J9.3 [imported] - Arabidopsis thaliana
Length = 436
Score = 73.2 bits (178), Expect = 1e-12
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++THL ++ A V G+ +G+ I ++LT SD+ LPFK RRQFL+ + FAMTIN
Sbjct: 313 LQITHLCNQIVQARVIIGDTIGEIVLIRTMNLTPSDTKLPFKMRRRQFLLPVAFAMTINK 372
Query: 105 NQGQSLSHVSLYL 117
+QGQSL V LYL
Sbjct: 373 SQGQSLQQVGLYL 385
>ref|NP_680269.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 72.4 bits (176), Expect = 2e-12
Identities = 36/74 (48%), Positives = 49/74 (65%)
Query: 44 PMRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTIN 103
P T LT+ ++ V G+++G+ IP I+LT SD LPFK RRQF +++ FA+TIN
Sbjct: 206 PATKTQLTKQVVQVRVITGDRIGEIVLIPLINLTPSDMKLPFKMRRRQFSLSVAFAITIN 265
Query: 104 NNQGQSLSHVSLYL 117
+QGQSL V LYL
Sbjct: 266 KSQGQSLEQVGLYL 279
>gb|AAD20107.1| putative helicase [Arabidopsis thaliana] gi|25353665|pir||H84515
probable helicase [imported] - Arabidopsis thaliana
Length = 1230
Score = 71.2 bits (173), Expect = 5e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++ L ++ + G ++GK IPR+SLT SD LPFK RR F +++ FAMTIN
Sbjct: 1150 LQIVRLGDKLVQGRILTGTRVGKLVIIPRMSLTPSDRRLPFKMKRRHFPLSVAFAMTINK 1209
Query: 105 NQGQSLSHVSLYL 117
+QGQSL +V +YL
Sbjct: 1210 SQGQSLGNVGMYL 1222
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 71.2 bits (173), Expect = 5e-12
Identities = 35/73 (47%), Positives = 50/73 (67%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++T L + ++ A V +++G IP I+LT SD+ LPFK RRQF +++ FAMTIN
Sbjct: 1629 LQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKMRRRQFPLSVAFAMTINK 1688
Query: 105 NQGQSLSHVSLYL 117
+QGQSL V LYL
Sbjct: 1689 SQGQSLEQVGLYL 1701
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 71.2 bits (173), Expect = 5e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++ L ++ + G ++GK IPR+ LT SD LPFK RRQF +++ FAMTIN
Sbjct: 1547 LQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTINK 1606
Query: 105 NQGQSLSHVSLYL 117
+QGQSL +V +YL
Sbjct: 1607 SQGQSLGNVGIYL 1619
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 71.2 bits (173), Expect = 5e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 45 MRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINN 104
+++ L ++ + G ++GK IPR+ LT SD LPFK RRQF +++ FAMTIN
Sbjct: 1351 LQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTINK 1410
Query: 105 NQGQSLSHVSLYL 117
+QGQSL +V +YL
Sbjct: 1411 SQGQSLGNVGIYL 1423
>emb|CAE76063.1| B1340F09.1 [Oryza sativa (japonica cultivar-group)]
Length = 698
Score = 70.9 bits (172), Expect = 7e-12
Identities = 38/71 (53%), Positives = 45/71 (62%)
Query: 47 VTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQ 106
VT LT +I + G G AYIPRI TS+ S PFK RRQF + L +AMTIN +Q
Sbjct: 291 VTQLTNRVIEGEIITGKAKGTKAYIPRIITTSAQSKWPFKLRRRQFPIRLSYAMTINKSQ 350
Query: 107 GQSLSHVSLYL 117
GQ+LS V LYL
Sbjct: 351 GQTLSIVGLYL 361
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.353 0.153 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,385,033
Number of Sequences: 2540612
Number of extensions: 4520611
Number of successful extensions: 23332
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23239
Number of HSP's gapped (non-prelim): 92
length of query: 117
length of database: 863,360,394
effective HSP length: 93
effective length of query: 24
effective length of database: 627,083,478
effective search space: 15050003472
effective search space used: 15050003472
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0403.8