BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.9
(421 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 385 e-105
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 358 2e-97
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi... 350 4e-95
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 341 2e-92
emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa (japonica cultivar... 332 1e-89
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 332 1e-89
ref|XP_469384.1| putative polyprotein [Oryza sativa (japonica cu... 330 5e-89
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (j... 330 5e-89
gb|AAL66756.1| putative prpol [Zea mays] 329 9e-89
gb|AAL76007.1| prpol [Zea mays] 327 4e-88
gb|AAQ56400.1| putative polyprotein [Oryza sativa (japonica cult... 326 7e-88
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 325 1e-87
emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar... 325 1e-87
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 325 1e-87
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 325 2e-87
emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa (japonica cultiva... 325 2e-87
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 325 2e-87
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 325 2e-87
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 325 2e-87
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 325 2e-87
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 385 bits (989), Expect = e-105
Identities = 180/326 (55%), Positives = 240/326 (73%), Gaps = 2/326 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICLALNPGIE--PVTQTRRQMGD 151
G + +D + L +N DLFAW+ DMPG+ + I L+ E P+ Q +R++G+
Sbjct: 852 GTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLSVYTEARPIAQKKRKLGE 911
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+ KA +E +KL+ A FI++ Y TW+ NVVMVKK NGKWRMCVDYTDLNKACPK+SYP
Sbjct: 912 ERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRMCVDYTDLNKACPKDSYP 971
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP+ID+LVDGA+G++++S +DAYSGY+QI+M+ D +KTAF T N+ Y+ MPFGLKNA
Sbjct: 972 LPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRTDSDNFFYEVMPFGLKNA 1031
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GATYQRLMD VF +GRN+EVYVDD++VKS H DL + F LR++ MRLNPEKC
Sbjct: 1032 GATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKEVFQALRQYRMRLNPEKC 1091
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
+FG++GGKFLGFM+T RGIE N +KCKAI EM+SP +KE+Q L+ R+ +LSRF+P +
Sbjct: 1092 AFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKEIQRLVSRLTSLSRFVPKLAE 1151
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAFK 417
++ P K LKK + FEW ECE+ F+
Sbjct: 1152 RTRPIIKLLKKTSKFEWTDECEQNFQ 1177
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 358 bits (919), Expect = 2e-97
Identities = 174/326 (53%), Positives = 231/326 (70%), Gaps = 2/326 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICLALN--PGIEPVTQTRRQMGD 151
GAEI + LL N FAWS +DM GIDP LN P +PV Q RR++G
Sbjct: 775 GAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGP 834
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+ +A+++EV KLL A I E+KYP W+ N V+VKK NGKWR+CVDYTDLNKACPK+SYP
Sbjct: 835 ERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYP 894
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID+LV+ SGN L+S +DA+SGY+QI MH D++KT+F+T R YCY+ M FGLKNA
Sbjct: 895 LPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNA 954
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GATYQR ++++ Q+GR +EVY+DDM+VKS+ H E L+K F L + M+LNP KC
Sbjct: 955 GATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKC 1014
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
+FG+ G+FLG+++T RGIE N + +AI E+ SP + +EVQ L GRIAAL+RF+ S D
Sbjct: 1015 TFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTD 1074
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAFK 417
K PF+ LK+ A F+W+ + EEAF+
Sbjct: 1075 KCLPFYNLLKRRAQFDWDKDSEEAFE 1100
>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411637|pir||F84528 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1787
Score = 350 bits (899), Expect = 4e-95
Identities = 169/343 (49%), Positives = 236/343 (68%), Gaps = 8/343 (2%)
Query: 80 RGTSQQAHADRGDQGA------EIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICL 133
+GT Q + D D ++ E + L +N FAWS +DMPGID C
Sbjct: 713 KGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCH 772
Query: 134 ALN--PGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGK 191
LN P +P+ Q RR++G + K +++EV KLL A I E++YP W+ N V+VKK NGK
Sbjct: 773 ELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGK 832
Query: 192 WRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTA 251
WR+C+D+TDLNKACPK+S+PLP ID+LV+ +GNEL+S +DA+SGY+QI MH +D +KT
Sbjct: 833 WRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTV 892
Query: 252 FMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHED 311
F+T + YCY+ MPFGLKNAGATY RL++++F Q+ +MEVY+DDM+VKS+ H
Sbjct: 893 FITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITH 952
Query: 312 LTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKE 371
L + F L ++NM+LNP KC+FG+ G+FLG+++T RGIE N + AI ++ SP + +E
Sbjct: 953 LRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTRE 1012
Query: 372 VQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEE 414
VQ LIGRIAAL+RF+ S DK PF++ L+ N FEW+ +CEE
Sbjct: 1013 VQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCEE 1055
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 341 bits (875), Expect = 2e-92
Identities = 162/308 (52%), Positives = 221/308 (71%), Gaps = 2/308 (0%)
Query: 111 ENLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAAD 168
EN+ +FAWS ++ G+D + I LA+ G +P Q R+M +++A E+ KLL A
Sbjct: 976 ENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAK 1035
Query: 169 FIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELM 228
IRE+ +P W+ N V+VKKANGKWRMC+D+TDLNKACPK+ +PLP ID+LVD +G ELM
Sbjct: 1036 VIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELM 1095
Query: 229 SLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVG 288
S +DAYSGYHQ+ M DE+KT+F+T YC+ MPFGLKNAGAT+ RL+ +V Q+G
Sbjct: 1096 SFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLG 1155
Query: 289 RNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTR 348
RN+E Y+DD++VKS +H +DL + F LRK +++LNPEKC FG++ GK LGF+++ R
Sbjct: 1156 RNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKR 1215
Query: 349 GIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEW 408
GIE N DK AI +M+ P + +EVQ L GR+A+LSRFL S +K PFFK L+ FEW
Sbjct: 1216 GIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEW 1275
Query: 409 NSECEEAF 416
+EC++AF
Sbjct: 1276 TAECQQAF 1283
>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa (japonica cultivar-group)]
Length = 1154
Score = 332 bits (851), Expect = 1e-89
Identities = 162/325 (49%), Positives = 222/325 (67%), Gaps = 2/325 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGD 151
G ++ + ++ +L +N+D+FAW ++ G+ + I LA+ P +P Q R+M
Sbjct: 474 GGDMGEREAENILEVLKKNIDIFAWGPDEVGGVSADLIMHYLAVKPDAKPRKQKLRKMSV 533
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+++A EV KLL I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ +P
Sbjct: 534 DRQEAAKAEVQKLLKTGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFP 593
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID+LVD +G ELMS +DAYSGYHQI M+P+ KTAF+T +C+ MPFGL+NA
Sbjct: 594 LPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPAHIPKTAFITPFGTFCHLRMPFGLRNA 653
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GAT+ RL+ +V Q+GRN+E YVDD++VKS H DL + F LR M+LNPEKC
Sbjct: 654 GATFARLVYKVLYKQLGRNVEAYVDDIVVKSRKAFDHVSDLQETFDNLRVAGMKLNPEKC 713
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GK LGF+++ RGIE N +K AIQ+MK P SV+EVQ L G+IAALSRFL + +
Sbjct: 714 VFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLAGQIAALSRFLSKAAE 773
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAF 416
+ PFFK L+ F W EC+ AF
Sbjct: 774 RGLPFFKTLRGAGKFSWTPECQAAF 798
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1587
Score = 332 bits (851), Expect = 1e-89
Identities = 164/319 (51%), Positives = 220/319 (68%), Gaps = 2/319 (0%)
Query: 100 EDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGDVKEKAI 157
+D ++L +N+D+FAWS ++ G+ + I LA+ P I+P Q R+M +++A
Sbjct: 773 DDADPTKLVLKKNIDIFAWSPDEVGGVPADLIMHDLAVKPDIKPRKQKLRKMSADRQEAA 832
Query: 158 HQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDK 217
EV KLL A I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ + LP ID+
Sbjct: 833 KAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFSLPRIDQ 892
Query: 218 LVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQR 277
LVD +G ELMS DAYSGYHQI M+P D KT+F+T +C+ MPFGL+NAGAT+ R
Sbjct: 893 LVDSTAGCELMSFQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFAR 952
Query: 278 LMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQG 337
L+ +V Q+GRN+E YVDD++VKS H DL + F LR ++LNPEKC FG+
Sbjct: 953 LVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGIKLNPEKCVFGVCI 1012
Query: 338 GKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFF 397
GK LGF+++ RGIE+N +K AIQ+MK P SV EVQ L GRIAALSRFL + +++ PFF
Sbjct: 1013 GKLLGFLVSERGIEVNPEKINAIQQMKPPSSVHEVQKLAGRIAALSRFLSKAAERALPFF 1072
Query: 398 KCLKKNAAFEWNSECEEAF 416
K L+ F W EC+ AF
Sbjct: 1073 KTLRGTGKFNWTPECQAAF 1091
>ref|XP_469384.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27552545|gb|AAO19368.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 777
Score = 330 bits (846), Expect = 5e-89
Identities = 161/311 (51%), Positives = 214/311 (68%), Gaps = 2/311 (0%)
Query: 108 LLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLL 165
+L +N+D+FAW ++ G+ + I LA+ P +P Q +M +++A EV KLL
Sbjct: 12 VLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLHKMSANRQEAAKAEVKKLL 71
Query: 166 AADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGN 225
A I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ +PLP ID+LVD G
Sbjct: 72 KAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTVGC 131
Query: 226 ELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEG 285
ELMS +DAYSGYHQI+M+P+D KTAF+T +C+ MPFGLKNAGAT+ RL+ +V
Sbjct: 132 ELMSFLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLKNAGATFARLVYKVLYK 191
Query: 286 QVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMI 345
Q+GRN+E YVDD++VKS H DL + F L M+LNPEKC FG++ GK LGF++
Sbjct: 192 QLGRNVEAYVDDIVVKSRKAFDHASDLQETFDNLCAAGMKLNPEKCVFGVRTGKLLGFLV 251
Query: 346 TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAA 405
+ RGIE N +K AIQ+MK P SV+EVQ L GRIA LSRFL + ++ PFFK L+
Sbjct: 252 SERGIEANPEKIDAIQQMKPPSSVREVQKLTGRIAVLSRFLSKAAERGLPFFKTLRGAGK 311
Query: 406 FEWNSECEEAF 416
F W EC+ F
Sbjct: 312 FNWTPECQAVF 322
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1168
Score = 330 bits (846), Expect = 5e-89
Identities = 161/325 (49%), Positives = 223/325 (68%), Gaps = 2/325 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGD 151
G ++ E+ ++ +L +N+D+FAW ++ G+ + I LA+ P +P Q +M
Sbjct: 555 GGDMGEEEAKNILEVLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLCKMSA 614
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+++A EV KLL A I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ +P
Sbjct: 615 DRQEAAKAEVQKLLKAGVIQEIDHPEWLANSVLVRKSNGKWRMCVDFTDLNKACPKDDFP 674
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID+LVD +G ELMS +DAYSGYHQI+M+P+D KTAF+T +C+ MPFGL+NA
Sbjct: 675 LPRIDRLVDSTAGCELMSFLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLRNA 734
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GAT+ RL+ +V Q+G+N+E YVDD++VKS H DL + F L M+LNPEKC
Sbjct: 735 GATFARLVYKVLYKQLGQNVEAYVDDIVVKSRKAFDHASDLQETFDNLHAAGMKLNPEKC 794
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GK LGF+++ RGIE N +K AIQ++K P SV+EVQ L GRIAALSRFL + +
Sbjct: 795 VFGVRAGKLLGFLVSERGIEANPEKIDAIQQIKPPSSVREVQKLAGRIAALSRFLSKAAE 854
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAF 416
+ FFK L+ F W EC+ AF
Sbjct: 855 RGLLFFKTLRGAGKFNWTPECQAAF 879
>gb|AAL66756.1| putative prpol [Zea mays]
Length = 969
Score = 329 bits (844), Expect = 9e-89
Identities = 160/326 (49%), Positives = 218/326 (66%), Gaps = 2/326 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGI--DPNFICLALNPGIEPVTQTRRQMGD 151
G+++ E + L N D+FAWS D+ G+ D N L ++P P Q R+M D
Sbjct: 457 GSQLTEEQEKTLTRFLFNNKDVFAWSANDLCGVNRDVNEHSLNVDPSFRPRKQRLRKMSD 516
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
K K EV +LL+A IRE+KYP W+ N VMVKKANGKWRMC+D+TDLNKACPK+ +P
Sbjct: 517 DKAKGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFP 576
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
L ID LVD A+ +ELMSL+D YSGYHQI M DE KT+F+T YCY MP GLKNA
Sbjct: 577 LSRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNA 636
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
G ++ R+ +V Q+GRN+ YVDD+IVKS+ +H DL + FA R+ ++LNPEKC
Sbjct: 637 GGSFSRMTAKVLHSQIGRNVLTYVDDIIVKSMKQENHIADLQETFANFRQAVLKLNPEKC 696
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GKFLG +++T+GIE N +K +AI M+ P + K Q L GR+A+L+RF+ S +
Sbjct: 697 VFGVKKGKFLGCLVSTKGIEANPNKIEAILRMEPPSTKKGAQRLTGRLASLNRFISGSAE 756
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAFK 417
++ PFF+ LK F+W S ++AF+
Sbjct: 757 RNLPFFEVLKSTEVFQWGSAQQKAFE 782
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 327 bits (838), Expect = 4e-88
Identities = 159/326 (48%), Positives = 218/326 (66%), Gaps = 2/326 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICLALN--PGIEPVTQTRRQMGD 151
G+++ E + L N D+FAWS D+ G++ + I +LN P P Q R+M D
Sbjct: 263 GSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQRLRKMSD 322
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
K + EV +LL+A IRE+KYP W+ N VMVKKANGKWRMC+D+TDLNKACPK+ +P
Sbjct: 323 DKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFP 382
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID LVD A+ +ELMSL+D YSGYHQI M DE KT+F+T YCY MP GLKNA
Sbjct: 383 LPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNA 442
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
G ++ R+ +V + Q+GRN+ YVDD+IVKS +H DL + FA R+ ++LNPEKC
Sbjct: 443 GGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKC 502
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GKFLG +++T+GIE N K +AI M+ P + K Q L GR+A+L+RF+ S +
Sbjct: 503 VFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSAE 562
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAFK 417
++ PFF+ LK F+W ++AF+
Sbjct: 563 RNLPFFEVLKSAEVFQWGPIQQKAFE 588
>gb|AAQ56400.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34015181|gb|AAQ56376.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1197
Score = 326 bits (836), Expect = 7e-88
Identities = 161/327 (49%), Positives = 218/327 (66%), Gaps = 2/327 (0%)
Query: 92 DQGAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQM 149
D+ +I +D ++L +N+D+FAW ++ G+ + + LA P +P Q R+M
Sbjct: 132 DKIIKIQIDDADPTKLVLKKNIDIFAWGPDEVGGVSTDLVMHHLAAKPDAKPRKQKLRKM 191
Query: 150 GDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNS 209
++A EV KLL A I+EI +P W+ N V+V+K+ GKWRMCVD+TDLNKACPK+
Sbjct: 192 SADCQEAAKVEVQKLLKAGVIKEIDHPEWLANPVLVRKSKGKWRMCVDFTDLNKACPKDD 251
Query: 210 YPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLK 269
+PLP ID+LVD +G ELMS +DAYSGYHQI M+P+D KTAF+T +C+ MPFGL+
Sbjct: 252 FPLPRIDQLVDSTAGYELMSFLDAYSGYHQIHMNPADIPKTAFITPFGTFCHLRMPFGLR 311
Query: 270 NAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPE 329
NA AT+ RL+ +V Q+GRN+E YVDD++VKS H DL + F LR M+LNPE
Sbjct: 312 NARATFARLVYKVLYKQLGRNVEAYVDDIVVKSRKAFDHTSDLQETFDNLRVVGMKLNPE 371
Query: 330 KCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHS 389
KC FG+ GK LGF++ RG+E N +K AIQ+M+ P SV+EVQ L GRIA LSRFL +
Sbjct: 372 KCVFGVCAGKLLGFLVYERGVEANPEKIDAIQQMRPPSSVREVQKLAGRIATLSRFLSKA 431
Query: 390 GDKSAPFFKCLKKNAAFEWNSECEEAF 416
++ PFFK L+ F W EC+ AF
Sbjct: 432 AERGLPFFKTLRGAGKFTWTPECQAAF 458
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 325 bits (834), Expect = 1e-87
Identities = 158/311 (50%), Positives = 212/311 (67%), Gaps = 2/311 (0%)
Query: 109 LGENLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLA 166
L N D+FAW DMPGI I L + +P+ Q R+ ++ AI +E+ KLLA
Sbjct: 941 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1000
Query: 167 ADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNE 226
A FI+E+ +P W+ N V+V+K G+WRMCVDYTDLNK+CPK+ + LP ID++VD +G E
Sbjct: 1001 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1060
Query: 227 LMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQ 286
L+S +D YSGYHQI++ SD KT+F+T YCY TMPFGLKNAGATYQR++ R F Q
Sbjct: 1061 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1120
Query: 287 VGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMIT 346
+GRN+E YVDD++VK+ DL + FA +R M+LNPEKC+FG+ GK LGFM++
Sbjct: 1121 IGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1180
Query: 347 TRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAF 406
RGI+ N +K AI MK P + K+VQ L G +AALSRF+ G++ PFFK LKK F
Sbjct: 1181 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1240
Query: 407 EWNSECEEAFK 417
+W E ++AF+
Sbjct: 1241 QWGPEAQKAFE 1251
>emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar-group)]
gi|50922621|ref|XP_471671.1| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
gi|38343986|emb|CAD40452.2| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2074
Score = 325 bits (834), Expect = 1e-87
Identities = 162/325 (49%), Positives = 221/325 (67%), Gaps = 2/325 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGD 151
G ++ E+ + +L +N+D+FAWS ++ G+ + I LA+ P I+P Q R+M
Sbjct: 1651 GGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRKMSA 1710
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+++A EV KLL A I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ +P
Sbjct: 1711 DRQEATKTEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKHDFP 1770
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID+LVD +G ELMS +DAYSGYHQI M+P D KT+F+T +C+ MPFGL+NA
Sbjct: 1771 LPRIDQLVDLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNA 1830
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GAT+ RL+ +V Q+GRN+E YVDD++VKS H DL + F L ++LNPEKC
Sbjct: 1831 GATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDNLCVAGIKLNPEKC 1890
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
F ++ GK LGF+++ GIE N +K AIQ+MK P S+ EVQ L GRIAALSRFL + +
Sbjct: 1891 VFSVRVGKLLGFLVSETGIEANPEKIDAIQQMKPPSSIHEVQKLAGRIAALSRFLSKAVE 1950
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAF 416
+ PFFK L+ F W EC+ AF
Sbjct: 1951 RGLPFFKTLRDARKFNWTPECQAAF 1975
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 325 bits (834), Expect = 1e-87
Identities = 158/311 (50%), Positives = 212/311 (67%), Gaps = 2/311 (0%)
Query: 109 LGENLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLA 166
L N D+FAW DMPGI I L + +P+ Q R+ ++ AI +E+ KLLA
Sbjct: 941 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1000
Query: 167 ADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNE 226
A FI+E+ +P W+ N V+V+K G+WRMCVDYTDLNK+CPK+ + LP ID++VD +G E
Sbjct: 1001 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1060
Query: 227 LMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQ 286
L+S +D YSGYHQI++ SD KT+F+T YCY TMPFGLKNAGATYQR++ R F Q
Sbjct: 1061 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1120
Query: 287 VGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMIT 346
+GRN+E YVDD++VK+ DL + FA +R M+LNPEKC+FG+ GK LGFM++
Sbjct: 1121 IGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1180
Query: 347 TRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAF 406
RGI+ N +K AI MK P + K+VQ L G +AALSRF+ G++ PFFK LKK F
Sbjct: 1181 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1240
Query: 407 EWNSECEEAFK 417
+W E ++AF+
Sbjct: 1241 QWGPEAQKAFE 1251
>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411562|pir||G84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1466
Score = 325 bits (833), Expect = 2e-87
Identities = 152/291 (52%), Positives = 211/291 (72%)
Query: 126 IDPNFICLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMV 185
+D F+ GI RR++G + KA++ EV+KLL IRE++YP W+ N V+V
Sbjct: 449 VDLIFLSTLERMGISRADVNRRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVV 508
Query: 186 KKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPS 245
KK NGK R+C+D+TDLNKACPK+S+PLP ID+LV+ +GNEL+S +DA+SGY+QI M+P
Sbjct: 509 KKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPE 568
Query: 246 DEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLG 305
D++KT F+T R YCY+ MPFGL+NAGATY RL++++F VG+ MEVY+DDM++KS+
Sbjct: 569 DQEKTLFITDRGIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKK 628
Query: 306 SSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKS 365
H + L + FA L ++ M+LNP KC+FG+ G+FLG+++T RGIE N ++ A M S
Sbjct: 629 EDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPS 688
Query: 366 PGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEEAF 416
P + KEVQ L GRIAAL+RF+ S DKS PF++ LK N F W+ +CEEAF
Sbjct: 689 PKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAF 739
>emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa (japonica cultivar-group)]
gi|50928329|ref|XP_473692.1| OSJNBb0016D16.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1748
Score = 325 bits (833), Expect = 2e-87
Identities = 157/308 (50%), Positives = 211/308 (67%), Gaps = 2/308 (0%)
Query: 112 NLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADF 169
N D+FAW DMPGI I L + +P+ Q R+ ++ AI +E+ KLLAA F
Sbjct: 975 NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGF 1034
Query: 170 IREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMS 229
I+E+ +P W+ N V+V+K G+WRMCVDYTDLNK+CPK+ + LP ID++VD +G EL+S
Sbjct: 1035 IKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLS 1094
Query: 230 LIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGR 289
+D YSGYHQI++ SD KT+F+T YCY TMPFGLKNAGATYQR++ R F Q+GR
Sbjct: 1095 FLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGR 1154
Query: 290 NMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRG 349
N+E YVDD++VK+ DL + FA +R M+LNPEKC+FG+ GK LGFM++ RG
Sbjct: 1155 NVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRG 1214
Query: 350 IEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWN 409
I+ N +K AI MK P + K+VQ L G +AALSRF+ G++ PFFK LKK F+W
Sbjct: 1215 IQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWG 1274
Query: 410 SECEEAFK 417
E ++AF+
Sbjct: 1275 PEAQKAFE 1282
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 325 bits (833), Expect = 2e-87
Identities = 157/308 (50%), Positives = 211/308 (67%), Gaps = 2/308 (0%)
Query: 112 NLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADF 169
N D+FAW DMPGI I L + +P+ Q R+ ++ AI +E+ KLLAA F
Sbjct: 975 NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGF 1034
Query: 170 IREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMS 229
I+E+ +P W+ N V+V+K G+WRMCVDYTDLNK+CPK+ + LP ID++VD +G EL+S
Sbjct: 1035 IKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLS 1094
Query: 230 LIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGR 289
+D YSGYHQI++ SD KT+F+T YCY TMPFGLKNAGATYQR++ R F Q+GR
Sbjct: 1095 FLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGR 1154
Query: 290 NMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRG 349
N+E YVDD++VK+ DL + FA +R M+LNPEKC+FG+ GK LGFM++ RG
Sbjct: 1155 NVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRG 1214
Query: 350 IEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWN 409
I+ N +K AI MK P + K+VQ L G +AALSRF+ G++ PFFK LKK F+W
Sbjct: 1215 IQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWG 1274
Query: 410 SECEEAFK 417
E ++AF+
Sbjct: 1275 PEAQKAFE 1282
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 325 bits (833), Expect = 2e-87
Identities = 158/326 (48%), Positives = 217/326 (66%), Gaps = 2/326 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICLALN--PGIEPVTQTRRQMGD 151
G+++ E + L N D+FAWS D+ G++ + I +LN P P Q R+M D
Sbjct: 263 GSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQRLRKMSD 322
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
K + EV +LL+A IRE+KYP W+ N VMVKKANGKWRMC+D+TDLNKACPK+ +P
Sbjct: 323 DKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFP 382
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID LVD + +ELMSL+D YSGYHQI M DE KT+F+T YCY MP GLKNA
Sbjct: 383 LPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYCYLRMPEGLKNA 442
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
G ++ R+ +V + Q+GRN+ YVDD+IVKS +H DL + FA R+ ++LNPEKC
Sbjct: 443 GGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKC 502
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GKFLG +++T+GIE N K +AI M+ P + K Q L GR+A+L+RF+ S +
Sbjct: 503 VFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSAE 562
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAFK 417
++ PFF+ LK F+W ++AF+
Sbjct: 563 RNLPFFEVLKSAEVFQWGPIQQKAFE 588
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 325 bits (832), Expect = 2e-87
Identities = 161/325 (49%), Positives = 220/325 (67%), Gaps = 2/325 (0%)
Query: 94 GAEIWREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFIC--LALNPGIEPVTQTRRQMGD 151
G ++ +E+ + + +N+D+FAWS ++ G+ I LA+ P +P Q R+M
Sbjct: 719 GGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMSA 778
Query: 152 VKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYP 211
+++A EV KLL A I+EI +P W+ N V+V+K+NGKWRMCVD+TDLNKACPK+ +P
Sbjct: 779 DRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNKACPKDDFP 838
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
LP ID+LVD +G ELMS ++AYSGYHQI M+P D KT+F+T +C+ MPFGL+NA
Sbjct: 839 LPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLRMPFGLRNA 898
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
GAT+ RL+ +V Q+GRN+E YVDD++VK H DL + F LR ++LNPEKC
Sbjct: 899 GATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAGIKLNPEKC 958
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
FG++ GK LGF+++ RGIE N +K AIQ+MK P SV EVQ L GRI ALSRFL + +
Sbjct: 959 VFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSRAAE 1018
Query: 392 KSAPFFKCLKKNAAFEWNSECEEAF 416
+ PFFK L+ F W EC+ AF
Sbjct: 1019 RGLPFFKTLRGAGKFNWTPECQVAF 1043
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 325 bits (832), Expect = 2e-87
Identities = 157/308 (50%), Positives = 211/308 (67%), Gaps = 2/308 (0%)
Query: 112 NLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADF 169
N D+FAW DMPGI I L + +P+ Q R+ ++ AI +E+ KLLAA F
Sbjct: 908 NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGF 967
Query: 170 IREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMS 229
I+E+ +P W+ N V+V+K G+WRMCVDYTDLNK+CPK+ + LP ID++VD +G EL+S
Sbjct: 968 IKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLS 1027
Query: 230 LIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGR 289
+D YSGYHQI++ SD KT+F+T YCY TMPFGLKNAGATYQR++ R F Q+GR
Sbjct: 1028 FLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGR 1087
Query: 290 NMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRG 349
N+E YVDD++VK+ DL + FA +R M+LNPEKC+FG+ GK LGFM++ RG
Sbjct: 1088 NVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRG 1147
Query: 350 IEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWN 409
I+ N +K AI MK P + K+VQ L G +AALSRF+ G++ PFFK LKK F+W
Sbjct: 1148 IQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWG 1207
Query: 410 SECEEAFK 417
E ++AF+
Sbjct: 1208 PEAQKAFE 1215
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 756,145,185
Number of Sequences: 2540612
Number of extensions: 32525694
Number of successful extensions: 95466
Number of sequences better than 10.0: 34756
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 32527
Number of HSP's that attempted gapping in prelim test: 90049
Number of HSP's gapped (non-prelim): 35298
length of query: 421
length of database: 863,360,394
effective HSP length: 131
effective length of query: 290
effective length of database: 530,540,222
effective search space: 153856664380
effective search space used: 153856664380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0383.9