BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.5
(1806 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 744 0.0
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 734 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 714 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 713 0.0
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 704 0.0
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 700 0.0
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 696 0.0
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 694 0.0
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 691 0.0
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 687 0.0
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 678 0.0
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 661 0.0
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 643 0.0
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 642 0.0
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 637 e-180
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 630 e-178
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 629 e-178
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 620 e-175
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 602 e-170
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 581 e-164
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 744 bits (1920), Expect = 0.0
Identities = 424/1188 (35%), Positives = 639/1188 (53%), Gaps = 40/1188 (3%)
Query: 440 KMISW--NCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHSIGV 497
K+++W NCRGLG+ VG LR L+ RP LVFL ET+ + + + G S V
Sbjct: 5 KLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAV 64
Query: 498 DCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQK 557
C G GGLA +W+++ V++ +S+ I + V+T + + + +YG P+ +
Sbjct: 65 SCEG----LSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEELPPWRI-SFVYGEPKRELR 119
Query: 558 WRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMG 617
W L+++L PWLC GDFNEVL E G + Q F+ +D CGL D+G
Sbjct: 120 HFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLG 179
Query: 618 FSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKA 677
F G +FTWSN + + + RLDRA+ N ++ ++ V ++ +SDH Y I +
Sbjct: 180 FVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDH---YAISIDL 236
Query: 678 KRQKKKKIRL-----YRFEEMWLQEEDCRHVIHHSWPR------GGRNITSKLGNVGANL 726
R+ + R+ +RFE WL+ ED R V+ +SW G R + S L V +L
Sbjct: 237 SRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSL 296
Query: 727 TEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRS 786
+W++A+FG+++++I +K ++ + + +++ K E++L L + EEI QRS
Sbjct: 297 KDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRS 356
Query: 787 RATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKAT 846
R WL GDRNT+FFH +AS R+ N I + D G +E I+ + ++E+LF +
Sbjct: 357 RVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSE 416
Query: 847 SPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFW 906
D E V + + ++ + + + +T EE++ AL +M TKA G DG PALF+Q W
Sbjct: 417 PCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHW 476
Query: 907 SIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKT 966
I+ + V L + +++ LIPK+ S +RPISL NV++K+ +K
Sbjct: 477 GILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKV 536
Query: 967 IANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKA 1026
+ANRLK FL DIV E QSAFVPGRLITD+A++A+EC H +R K ALK DM KA
Sbjct: 537 LANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKA 595
Query: 1027 YDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLS 1086
YDRVEW +L L ++GF+Q W N +M CVS+V + V +NG+ + P RG+RQGDP+S
Sbjct: 596 YDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPIS 655
Query: 1087 PYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLH 1146
PYLF+LC E S ++ K AG L GIK P ISHL FADDSI A+A L
Sbjct: 656 PYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALK 715
Query: 1147 DIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRS 1206
+ ++ Y + SGQ+IN KS + + P ++ L V YLG+PT +G +
Sbjct: 716 NTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLA 775
Query: 1207 KTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVER 1266
T F F+ ERIWK++ GW ++ LSR+G E ++K++AQAIP+YVM F +P ++C +++
Sbjct: 776 TTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKT 835
Query: 1267 MINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSL 1326
I +WG +K++W W L+TPK +GG+GFR F +FN+A+L +Q WRL+ +SL
Sbjct: 836 CIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSL 895
Query: 1327 MVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWL 1386
+V+K RY+P S+ EA + + S+ W+S+ RE++ KG W VG G+ I I++D W+
Sbjct: 896 CSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWI 955
Query: 1387 PNSSSGRVTT----PRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRG 1442
P VTT P +A V L+ W+ LI++ F A +ILQIP+
Sbjct: 956 PGFRPQLVTTLSPFPTDAT-----VSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISR 1010
Query: 1443 THAKDQLIWKDSGVGQYSVKAGYRIQRS------QNNTHPATGPSGTNHSNLWKKVWKVK 1496
D W +G YSV++ Y + RS Q+N+ WK +WK+
Sbjct: 1011 HGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKIN 1070
Query: 1497 TLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLW-- 1554
+ +WRA L L+RR + C C D+T H L C ++W
Sbjct: 1071 APGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEE 1129
Query: 1555 FASHLNLHLNEELPDNFAGWLEQVLELPNEETMADLFNLIWVIWKRRN 1602
+ L W+ L+ + L W IW+ RN
Sbjct: 1130 IKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARN 1177
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 734 bits (1896), Expect = 0.0
Identities = 400/1136 (35%), Positives = 616/1136 (54%), Gaps = 18/1136 (1%)
Query: 427 SGEDCGAVPPRA---MKMISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQ 483
+G+D A P A M ++WNCRGLG V LR LI LVFL ETR+ ++
Sbjct: 621 NGKDMEATSPGAAGAMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMS 680
Query: 484 KTKMPSGLVHSIGVDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKM 543
+ + +GV + EGKS GGLA YW S+ V++ ++ +I V + + +
Sbjct: 681 RLRRKLAFRGFVGV--SSEGKS--GGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQW 736
Query: 544 VVTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQA 603
+T +YG P + R W L++ + +PW+ +GDFNE L E NP Q
Sbjct: 737 HITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQN 796
Query: 604 FQEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRF 663
F++A+ C L+D+GF G T+ N R ++ RLDRA+ ++ W + +P VSHL
Sbjct: 797 FRDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSP 856
Query: 664 NSDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGG-----RNITSK 718
SDH+PI + F+ K + + + +E +W +E + VI +W G +I
Sbjct: 857 CSDHSPILLEFI-VKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIA 915
Query: 719 LGNVGANLTEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLE 778
LG V + L W++ N+ K ++ ++ + A+ +++ +A + +L E
Sbjct: 916 LGRVMSALRSWSKTKVKNVGKELEKARKKLEDLIASNAARSSIR---QATDHMNEMLYRE 972
Query: 779 EIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKY 838
E+ W QRSR WL GDRNT FFH +A R +N I+++ D+ G + +E + T+Y
Sbjct: 973 EMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEY 1032
Query: 839 FEDLFKATSPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTP 898
F+ ++KA + E VT L ++T+ E + + F EEE+ +A+ ++ P K+ DG P
Sbjct: 1033 FQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFP 1092
Query: 899 ALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NV 958
A F+Q+ W + D+ V + G +N T I LIPK +P KDYRPISL NV
Sbjct: 1093 ARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNV 1152
Query: 959 IFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMA 1018
++K+V+K + NRL+ L D+V + QSAF+ GR+ITDNA++A ECFH +++ + A
Sbjct: 1153 VYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACA 1212
Query: 1019 LKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERG 1078
K D+SKAYDRV+W FL+ L ++GF RW + IM CV+TV + V NG RSF P RG
Sbjct: 1213 YKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRG 1272
Query: 1079 LRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARAT 1138
LRQG+PLSP+LF+ A+ S ++K KVA L +KI +AP IS+L FADD++L +A
Sbjct: 1273 LRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAE 1332
Query: 1139 KEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLG 1198
K+EA V+ +++ Y +GQ IN K + PS+ ++ L V+ +YLG
Sbjct: 1333 KKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLG 1392
Query: 1199 LPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPS 1258
PT GR F ++ +I K++ W E LS G+E+LIK++ QAIP YVMGLF P
Sbjct: 1393 FPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPD 1452
Query: 1259 TLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWR 1318
++ +++ +M +F+WG R+ +W WD+L K GGLGFR + FN+ALL +Q WR
Sbjct: 1453 SVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWR 1512
Query: 1319 LINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKI 1378
LI NSL QV+KA+Y+P + + N+S W + ++++KG IW++G G +
Sbjct: 1513 LIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSV 1572
Query: 1379 HIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQI 1438
IW D W+P S R + + AN + V +LI A G W+ + I F DA I +I
Sbjct: 1573 RIWRDPWIPRDLSRRPVSSK-ANCRLKWVSDLI-AEDGTWDSAKINQYFLKIDADIIQKI 1630
Query: 1439 PLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSNLWKKVWKVKTL 1498
+ +D + W G++SV++ Y++ + + + S + + W+ +WK
Sbjct: 1631 CISARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVP 1690
Query: 1499 PRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLW 1554
+ WR L N K+R ++ C C E E HAL C LW
Sbjct: 1691 QKVRIFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLW 1746
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 714 bits (1843), Expect = 0.0
Identities = 399/1194 (33%), Positives = 632/1194 (52%), Gaps = 47/1194 (3%)
Query: 439 MKMISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGL--VHSIG 496
M+++SWNC+G+G V LR++ + P+++FL ET+K+ ++ G +H++
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTV- 59
Query: 497 VDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQ 556
E + GGLA W S+ + + L S+ ++ D + +T IYG P +
Sbjct: 60 -----EPIGKSGGLALMWKDSVQIKV--LQSDKRLIDALLIWQDKEFYLTCIYGEPVQAE 112
Query: 557 KWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDM 616
+ WE + +L PW+ GDFNE++ SEK GG F++ ++ CGL ++
Sbjct: 113 RGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEV 172
Query: 617 GFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLK 676
SG+QF+W R +Q RLDR + N+ W E +P ++L + SDH+P+ +
Sbjct: 173 NHSGYQFSWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVG 231
Query: 677 AKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGRNITS----KLGNVGANLTEWAEA 732
+K +++++ W+Q E + ++ + W + + K+ + +++W
Sbjct: 232 ---DNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRV 288
Query: 733 TFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLA 792
+ + RI+ K A +Q + ++ +KEL EE W ++SR W+
Sbjct: 289 SKPSSAVRIQELQ--FKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMR 346
Query: 793 HGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKAT----SP 848
+GDRNT +FH R+ +N I ++ D+ GR WT +ED+ V YF+ LF + +
Sbjct: 347 NGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTV 406
Query: 849 DDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSI 908
++ E +T LV ++ N + P T+EEV+ A ++P K G DG +Q+FW
Sbjct: 407 EELENLTPLVSDQMNNN----LLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWET 462
Query: 909 VGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIA 968
+G +T V + G+ +N+T I LIPKI K D+RPISL NVI+K++ K +A
Sbjct: 463 MGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMA 522
Query: 969 NRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYD 1028
NRLK L ++ ETQ+AFV GRLI+DN +IAHE H + + + +A+KTD+SKAYD
Sbjct: 523 NRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYD 582
Query: 1029 RVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPY 1088
RVEW FL+ + +GF W LIM CV +V +QVL+NG P P RGLRQGDPLSPY
Sbjct: 583 RVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPY 642
Query: 1089 LFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDI 1148
LF++C E+ M+++ + G+K+ AP ISHL FADDS+ + E + I
Sbjct: 643 LFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRI 702
Query: 1149 IKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKT 1208
I+ Y SGQR+N+ KS + +++ R +++ LG++ G YLGLP SK
Sbjct: 703 IEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKV 762
Query: 1209 QVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMI 1268
S++++R+ KK+ GW+ LS G+E+L+K++A A+P+Y M F +P T+C Q+E ++
Sbjct: 763 ATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVM 822
Query: 1269 NSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMV 1328
F+W + R L+W W L+ PK +GGLGF+ +FN ALL KQ WR+I ++SLM
Sbjct: 823 AEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMA 882
Query: 1329 QVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWL-- 1386
+V K+RY+ KS PL A G+ S+ WKS++ A+ +I++G +G GE I++W D W+
Sbjct: 883 KVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGA 942
Query: 1387 -PNSSSGRV----TTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLR 1441
P ++ V + A V +L+L WN +L+ F IL +
Sbjct: 943 KPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPG 1002
Query: 1442 GTHAKDQLIWKDSGVGQYSVKAGY----RIQRSQNNTHPATGPSGTNHSNLWKKVWKVKT 1497
G +D+ W+ S G YSVK+GY I +NN PS +++++WK+
Sbjct: 1003 GKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPS---LDPIFQQIWKLDV 1059
Query: 1498 LPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFAS 1557
P+ + +WR L V NL R + + C C ET H L C R W S
Sbjct: 1060 PPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAIS 1119
Query: 1558 HLNLHLNEELPDNFAGWLEQVLEL----PNEETMADLFN-LIWVIWKRRNAWIF 1606
L E ++ + VL + P E L ++W +WK RN +F
Sbjct: 1120 PLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVF 1173
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 713 bits (1840), Expect = 0.0
Identities = 394/1116 (35%), Positives = 595/1116 (53%), Gaps = 21/1116 (1%)
Query: 500 NGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKWR 559
+ EG S GGLA YW S+ V++ ++ +I V + + + VT +YG P + R
Sbjct: 789 SSEGMS--GGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHR 846
Query: 560 TWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFS 619
W L++ + +PW +GDFNE + E P Q F++ + C L D+GF
Sbjct: 847 MWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFK 906
Query: 620 GFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKR 679
G T+ N R ++ RLDR + ++ W + + V HL SDH PI ++ L K
Sbjct: 907 GVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPI-LLNLVVKD 965
Query: 680 QKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGR-----NITSKLGNVGANLTEWAEATF 734
+ + + +E +W +E + VI +W G +I L V L W+ A
Sbjct: 966 PHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKV 1025
Query: 735 GNIQKRIKSQLGIIKRIQAAEQTEENLKKG--KEAEKELENLLKLEEIKWSQRSRATWLA 792
N+ + ++ R + AE E N + + A + LL EE+ W QRSR WL
Sbjct: 1026 KNVGRELEKA-----RKKLAELIESNADRTVIRNATDHMNELLYREEMLWLQRSRVNWLK 1080
Query: 793 HGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCE 852
DRNT FFH +A R +N I+++ D + +E + T+YF+D++ A + E
Sbjct: 1081 DEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPE 1140
Query: 853 IVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYD 912
VT L+ ++T+ E + E FTE+E+ +A+ ++ P K+ G DG PA F+Q+ W + D
Sbjct: 1141 TVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKAD 1200
Query: 913 VTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLK 972
+ V G +N T I LIPK ++P +D+RPISL NV++K+V+K + NRL+
Sbjct: 1201 IIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLR 1260
Query: 973 SFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEW 1032
L D+V QSAFV GR+ITDNA++A ECFH M++ + A K D+SKAYDRV+W
Sbjct: 1261 PILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDW 1320
Query: 1033 NFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFIL 1092
FL+ + ++GF +RW N IM CV++V + V NG +SF P RGLRQGDPL P+LF+
Sbjct: 1321 RFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLF 1380
Query: 1093 CAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGY 1152
A+ S ++K KVA L K+ AP ISHL FADD++L +A + EA V+ +++ Y
Sbjct: 1381 VADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSY 1440
Query: 1153 EAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFS 1212
+GQ IN K + + ++L V+ +YLG PT GR F
Sbjct: 1441 AMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQ 1500
Query: 1213 FVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFY 1272
++ +IWK++ W E LS G+EVLIK++ QAIP YVMG+F LP ++ + + ++ +F+
Sbjct: 1501 SLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFW 1560
Query: 1273 WGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIK 1332
W RK +W WD+L PK++GGLGFR + FN+ALLA+Q WRLI +SL +V+K
Sbjct: 1561 WDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLK 1620
Query: 1333 ARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSG 1392
A+Y+P + ++ + G+NSS W+S+ ++++KG IW+VG G I IW D WLP S
Sbjct: 1621 AKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1680
Query: 1393 RVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWK 1452
R T + AN + V +LI G W+ I F DA IL I + +D + W
Sbjct: 1681 RPITGK-ANCRLKWVSDLITED-GSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWH 1738
Query: 1453 DSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSN-LWKKVWKVKTLPRCNEIIWRACKG 1511
G +SV++ YR+ N ++ SGTN+ N W+ +WK K + WR
Sbjct: 1739 PDKNGMFSVRSAYRLAAQLVNIEESSS-SGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 1797
Query: 1512 VLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNF 1571
L +N K+R ++ C C E+E HAL C +LW H + ++ ++ +
Sbjct: 1798 CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASV 1857
Query: 1572 AG--WLEQVLELPNEETMADLFNLIWVIWKRRNAWI 1605
G WL LE E A +W W RN I
Sbjct: 1858 LGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELI 1893
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 704 bits (1818), Expect = 0.0
Identities = 400/1199 (33%), Positives = 625/1199 (51%), Gaps = 70/1199 (5%)
Query: 441 MISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSG--LVHSIGVD 498
+ISWNC+GL P + L+++ PD++FLMET+ + K G +H++
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTV--- 58
Query: 499 CNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKW 558
E + R GGLA +W S L++ + N + ++V++ + ++ +YG P +
Sbjct: 59 ---EPEGRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSR--NKVWFISCVYGLPVTHMRP 113
Query: 559 RTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGF 618
+ WE + + W +GDFN++ + EK GG + Q F+ + C + ++G
Sbjct: 114 KLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGS 173
Query: 619 SGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAK 678
+G FTW R +Q +LDR N W +P+ H L++F SDH P+ V F
Sbjct: 174 TGNSFTWGGNR-NDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDN 232
Query: 679 RQKKKKIRLYRFEEMWLQEEDCRHVIHHSW----PRGGRNITSKLGNVGANLTEWAEATF 734
+ + +R+++ + C VIH SW +G + L ++ W ++
Sbjct: 233 ELFRGQ---FRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSD 289
Query: 735 GNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELE-----------NLLKL----EE 779
N Q RIK L+K +AEK ++ + L L EE
Sbjct: 290 TNAQSRIK-----------------RLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEE 332
Query: 780 IKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYF 839
+ W Q+SR WLA GD+NT FFH + +N ++ + D+ + +T D ++ + +F
Sbjct: 333 LFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFF 392
Query: 840 EDLFKATSPDDCEIVTNLVH-----GRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGA 894
E+LF +T I+T+ H ++T+E + + TE EV A+ ++ A G
Sbjct: 393 ENLFTSTY-----ILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGP 447
Query: 895 DGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPIS 954
DG ALFFQ+ W +V + + ++ G N T I LIPKI P D RPIS
Sbjct: 448 DGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPIS 507
Query: 955 L*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVK 1014
L +V++K+++K + RLK L IV TQSAFVP RLI+DN ++AHE H +R R K
Sbjct: 508 LCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISK 567
Query: 1015 GVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFK 1074
MA KTDMSKAYDRVEW FL++ + +GF +W + IMNCV++VS+ VL+NGQP
Sbjct: 568 EHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHII 627
Query: 1075 PERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILL 1134
P RG+RQGDPLSP LF+LC E ++ AG + GI+ + ++HL FADD++L+
Sbjct: 628 PTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLM 687
Query: 1135 ARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHG 1194
+ATK+E L + Y SGQ IN +KS ++ +NV ++ G+ G
Sbjct: 688 CKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTG 747
Query: 1195 KYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLF 1254
KYLGLP + SK +F F++E++ +L GW K LS+ G+EVL+KSIA A+P YVM F
Sbjct: 748 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 807
Query: 1255 LLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAK 1314
LP LC ++ ++ F+W RK++W+ W L PK+ GG GF+ FN+ALLAK
Sbjct: 808 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 867
Query: 1315 QWWRLINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGT 1374
Q WR++ + SL +V ++RY+ S L A RG+ SY W+S+ RE++ +G +G
Sbjct: 868 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGN 927
Query: 1375 GEKIHIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASK 1434
G+K +W D+WL + S+ R R +V +LI WN ++++ F D
Sbjct: 928 GQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEI 987
Query: 1435 IL-QIPLRGTHAKDQLIWKDSGVGQYSVKAGYR-IQRSQNNTHPATGPSGTNHSNLWKKV 1492
IL Q PL +D W S G YSVK GY + + ++ + ++L+ K+
Sbjct: 988 ILKQRPL--FFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKI 1045
Query: 1493 WKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRR 1552
W + T P+ +W+A G +PV L+ RG+ D C C E+ET H L C R+
Sbjct: 1046 WNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQ 1105
Query: 1553 LWFASHLNLHLNEELPDNFAGWLEQVLELPNEETMADLFN-----LIWVIWKRRNAWIF 1606
+W +HL+ E ++ + ++++L + + ++W +WK RNA +F
Sbjct: 1106 VWAITHLS-SAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLF 1163
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 700 bits (1807), Expect = 0.0
Identities = 405/1071 (37%), Positives = 565/1071 (51%), Gaps = 122/1071 (11%)
Query: 548 IYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEA 607
+YG + K RTW ++ L +P PWL GDFNE+L S EK G F+ A
Sbjct: 396 LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHA 455
Query: 608 MDFCGLRDMGFSGFQFTWSN-MRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSD 666
+ CGL D+GF G FTW N I+E LDRA+ N W +P V + D +SD
Sbjct: 456 LTDCGLDDLGFEGDAFTWRNHSHSQEGYIREWLDRAVANPEWRAMFPAARVINGDPRHSD 515
Query: 667 HNPIYVIFLKAKRQK---KKKIRLYRFEEMWLQEEDCRHVIHHSWPRG----GRNITSKL 719
H P+ +I L+ K + + +RFE WL+EE + V+ +W G + + L
Sbjct: 516 HRPV-IIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLLVHASL 574
Query: 720 GNVGANLTEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEE 779
V A L+ W+ G+++KR+ K+ +KELE +
Sbjct: 575 AGVAAGLSSWSSNVLGDLEKRL-----------------------KKVKKELETCRR--- 608
Query: 780 IKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYF 839
Q R+ + R EEVL
Sbjct: 609 ---------------------------QPISRDQVVR---------------EEVLRYRL 626
Query: 840 EDLFKATSPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPA 899
E L + + + ++V +++ E + FT EEV+EAL + KA G DG PA
Sbjct: 627 EKL-------EQQNLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPA 679
Query: 900 LFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVI 959
F++ W +VG VT +VL +L GA N T I LIPK+
Sbjct: 680 GFYKACWDVVGEKVTVEVLEVLRGGAIPEGWNDTTIVLIPKV------------------ 721
Query: 960 FKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMAL 1019
+ANRLK L D++ QSAFVPGRLI+DN +IA+E HYMR K G G A
Sbjct: 722 -------LANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAF 774
Query: 1020 KTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGL 1079
K DMSKAYDRVEW+FL + ++GF W NLIM CVSTV++++ +NG+ SF PERGL
Sbjct: 775 KLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGL 834
Query: 1080 RQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATK 1139
RQGDPLSPYLF+LCAE FS+++ G LHGI+I AP +SHL FADDS++L RA
Sbjct: 835 RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 894
Query: 1140 EEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGL 1199
EA L I++ YE SGQ IN DKS + S N S + L ++ + KYLGL
Sbjct: 895 GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGL 954
Query: 1200 PTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPST 1259
P VGRS+T++FS+++ERIW++++GWKEK LSR+G+E+LIK++AQ IP++ MG F L
Sbjct: 955 PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKD 1014
Query: 1260 LCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRL 1319
LC+Q+ +MI ++W K++W+ W+ L PKNMGGLGFR + FN A+LAKQ WRL
Sbjct: 1015 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1074
Query: 1320 INRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIH 1379
I +SL +V++A+Y+P + +N SY W+S+ V+Q G IW+VG G KI+
Sbjct: 1075 IQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKIN 1134
Query: 1380 IWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIP 1439
IW D W+P S + TPR AN +V ELI G W+E L+ TF D + I IP
Sbjct: 1135 IWADPWIPRGWSRKPMTPRGANL-VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIP 1193
Query: 1440 LRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNH-----SNLWKKVWK 1494
+ +D L W G ++VK+ Y++QR G G ++ + WKK+WK
Sbjct: 1194 VH-VEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWK 1252
Query: 1495 VKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLW 1554
+ + +WR C L +R NL RGMD+DT+C CG +E H C ++++W
Sbjct: 1253 LGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW 1312
Query: 1555 FASHLNLHLNEELPDNFAG--WLEQVLELP-NEETMADLFNLIWVIWKRRN 1602
A +L L L +G L+ + P NE T A + +W WK RN
Sbjct: 1313 QALNLE-ELRSMLEQQTSGKNVLQSIYCRPENERTSAIV--CLWQWWKERN 1360
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 696 bits (1797), Expect = 0.0
Identities = 391/1166 (33%), Positives = 596/1166 (50%), Gaps = 76/1166 (6%)
Query: 435 PPRAMKMISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHS 494
P AM +SWNCRG+G V L L+ VFL ETR+ +I++ + GL
Sbjct: 430 PSGAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGF 489
Query: 495 IGVDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEA 554
GV +G GGLA +W S+ V I++ + I + + D T +YG P
Sbjct: 490 AGVSSDG----MSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRV 545
Query: 555 PQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLR 614
+ + W L+ + + WL +GDFNE L E P + QAF++ +D C L
Sbjct: 546 ENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELH 605
Query: 615 DMGFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIF 674
D+G SG T+ N R N ++ RLDRAL ++ W + + V HL S+H PI
Sbjct: 606 DLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIV--- 662
Query: 675 LKAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGRNITSKLGNVGANLTEWAEATF 734
++L+ V SW + K N+G L +
Sbjct: 663 ----------LKLHG------------SVPDQSWSK------KKYKNIGRELEK------ 688
Query: 735 GNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLAHG 794
+K++ + L A QT + + + LL EE+ W QRSR WL G
Sbjct: 689 --TRKKLSNLLEAGTDKAAIRQTSDYMNE----------LLYREEMLWLQRSRVNWLKEG 736
Query: 795 DRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIV 854
DRNT FFH + + R +N I ++ D G + +E++ T+YF+D+F A D V
Sbjct: 737 DRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTADPNLDHSPV 796
Query: 855 TNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVT 914
T L+ ++T E + F+E+E+ AL ++ P KA G DG A F+Q+ W + D+
Sbjct: 797 TRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDIV 856
Query: 915 AQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSF 974
V + G +N T I LIPKI++P +D+RPISL NVI+K+++K + NRL+ F
Sbjct: 857 RAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPF 916
Query: 975 LQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNF 1034
L +++ + QSAFVP R+ITDNA++A ECFH+++R A K D+SKAYDRV+W F
Sbjct: 917 LDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRF 976
Query: 1035 LKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCA 1094
L+ ++ + GF+ W + +M C+STV ++G R P+LF+ A
Sbjct: 977 LEQSMYKWGFSHCWVSWVMTCISTVC---------------DKGTR----CDPFLFLFVA 1017
Query: 1095 EVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEA 1154
+ S +++ KV G + I++ +AP ISHL FADD++L +A ++ + ++ Y
Sbjct: 1018 DGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYAT 1077
Query: 1155 FSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFV 1214
+GQ IN K + ++P + L + + E KYLGLPT GR F +
Sbjct: 1078 STGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSL 1137
Query: 1215 RERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWG 1274
RERIWKK+ W E LS G+EVLIK++ QAIP YVMG+F LP ++C + + +F+WG
Sbjct: 1138 RERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWG 1197
Query: 1275 GSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKAR 1334
RK +W W +L K++GGLGF+ FN+ALLA+Q WRLI+ +SL +V+KA+
Sbjct: 1198 AEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAK 1257
Query: 1335 YYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRV 1394
YYP + ++ + G N+S W+++ E+++KG IW++G G + +W D WLP S R
Sbjct: 1258 YYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRP 1317
Query: 1395 TTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWKDS 1454
TP+N N + V +L+L GMW+ + I F D IL++ +D + W
Sbjct: 1318 ITPKN-NCRIKWVADLML-DNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPD 1375
Query: 1455 GVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLP 1514
+G +SV+ YR+ + ++ S N W+ +WK + WRA LP
Sbjct: 1376 KLGNFSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLP 1435
Query: 1515 VRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNFAG- 1573
N K+R +++ C CG E E T HAL C + LW A + L+ + D+ G
Sbjct: 1436 TWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGP 1495
Query: 1574 -WLEQVLELPNEETMADLFNLIWVIW 1598
WL L L + ++W IW
Sbjct: 1496 SWLFNRLALLPDHEQPMFLMVLWRIW 1521
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 694 bits (1791), Expect = 0.0
Identities = 407/1206 (33%), Positives = 631/1206 (51%), Gaps = 61/1206 (5%)
Query: 425 IGSGEDCGAVPPRAMKMISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQK 484
I G D GA P G+G P L +L M D++FL+ET + ++ K
Sbjct: 379 IHDGRDGGAGGP-----------GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCK 427
Query: 485 TKMPSGLVHSIGVDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMV 544
G + I NG R GGLA W +++ +++IS I VT +
Sbjct: 428 LAYDLGFPNVITQPPNG----RSGGLALMWKNNVSLSLISQDERLIDSHVTFN--NKSFY 481
Query: 545 VTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAF 604
++ +YGHP ++ + W+ ++ ++ + WL +GDFNE+L ++EK GG + F
Sbjct: 482 LSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNF 541
Query: 605 QEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFN 664
+ + C + DM G +F+W R T +T++ LDR +N WT +P+ + LD
Sbjct: 542 RNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFINSAWTATFPYAEIEFLDFTG 600
Query: 665 SDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGRN-----ITSKL 719
SDH P+ V F ++ ++ K L+RF+ + + ++ SW R RN IT ++
Sbjct: 601 SDHKPVLVHFNESFPRRSK---LFRFDNRLIDIPTFKRIVQTSW-RTNRNSRSTPITERI 656
Query: 720 GNVGANLTEWAEATFGNIQKRIKS-QLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLE 778
+ + A+ N ++RIK Q + + +++ + + L + ++ L E
Sbjct: 657 SSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIP--QLQESLAKAFSDE 714
Query: 779 EIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKY 838
EI W Q+SR W+ GD+NT +FH R +N + I DD+GR +T +++I +
Sbjct: 715 EIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDF 774
Query: 839 FEDLFKAT----SPDDC----EIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTK 890
F ++F SP D VTN V+ +T E F++ E+ +A+ ++ K
Sbjct: 775 FTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKE--------FSDTEIYDAICQIGDDK 826
Query: 891 AHGADGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDY 950
A G DG A F++ W IVGYDV +V IN T I +IPKI P+ DY
Sbjct: 827 APGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDY 886
Query: 951 RPISL*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKT 1010
RPI+L NV++K+++K + NRLKS L IV ++Q+AF+PGR+I DN +IAHE H ++ +
Sbjct: 887 RPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRK 946
Query: 1011 RGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPC 1070
R K MA+KTD+SKAYDRVEW+FL++T+ GF +W IM V +V + VL+NG P
Sbjct: 947 RVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPH 1006
Query: 1071 RSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADD 1130
P RG+RQGDPLSPYLFILC ++ S +I + ++G L G++I AP I+HL FADD
Sbjct: 1007 GYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADD 1066
Query: 1131 SILLARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAV 1190
S+ +A L D+ YE +SGQ+IN KS ++ V + L+Q+L +
Sbjct: 1067 SLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQ 1126
Query: 1191 EKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYV 1250
GKYLGLP GR K ++F ++ +R+ K+ W + LS +G+E+++KS+A A+P Y
Sbjct: 1127 GGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYA 1186
Query: 1251 MGLFLLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKA 1310
M F LP + +++E ++ +F+W +++ R + W+ W L K GGLGFR FN A
Sbjct: 1187 MSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDA 1246
Query: 1311 LLAKQWWRLINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIW 1370
LLAKQ WRLI NSL +V+KARY+ + L+A SY W S+ +++KG+
Sbjct: 1247 LLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRH 1306
Query: 1371 KVGTGEKIHIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRG----MWNESLIKAT 1426
+G G+ I I L N P N E + + L R W++S I
Sbjct: 1307 LIGDGQNIRI----GLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQF 1362
Query: 1427 FSGYDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTH-PATGPSGTNH 1485
D I +I L + D++IW + G+Y+V++GY + +T+ PA P
Sbjct: 1363 VDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPP-HGS 1421
Query: 1486 SNLWKKVWKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALL 1545
+L ++W + +P+ +WRA L L RGM +D CP C E+E+ HAL
Sbjct: 1422 IDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALF 1481
Query: 1546 TCSSIRRLWFASHLNLHLNEELPDNFAGWLEQVLELPNEETMADLFN-----LIWVIWKR 1600
TC W S +L N+ + ++F + +L + TM+D LIW IWK
Sbjct: 1482 TCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKA 1541
Query: 1601 RNAWIF 1606
RN +F
Sbjct: 1542 RNNVVF 1547
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 691 bits (1784), Expect = 0.0
Identities = 388/1183 (32%), Positives = 606/1183 (50%), Gaps = 53/1183 (4%)
Query: 439 MKMISWNCRGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHSIGVD 498
M++ WNC+GLG P V L ++ + D++FL+ET+++ + + G
Sbjct: 363 MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDM---- 418
Query: 499 CNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKW 558
C + GGL YW L + +IS + + V + ++ IYGHP ++
Sbjct: 419 CIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYK--NFNFYLSCIYGHPIPSERH 476
Query: 559 RTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGF 618
WE +++++ PW+ GDFNE+L +EK GG + Q F ++ C ++D+
Sbjct: 477 HLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKS 536
Query: 619 SGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAK 678
G ++W R TI+ LDR +N W +P L SDH P+ + +
Sbjct: 537 KGNPYSWVGKRQN-ETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEV 595
Query: 679 RQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGRN----ITSKLGNVGANLTEWAEATF 734
K+ + +R++ Q ED + W RG + KL L +W T
Sbjct: 596 CTKRGQ---FRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTK 652
Query: 735 GNIQKRIKSQLGIIKRIQAAEQTEENLKKG-KEAEKELENLLKLEEIKWSQRSRATWLAH 793
N ++I++ + R+ AAE+ + ++L + EE+ W +SR W+
Sbjct: 653 TNTAEKIET---LKYRVDAAERDHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLL 709
Query: 794 GDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEI 853
GDRNT FF+ RK RN I ITD +G ++ I +V YF DLF T D E
Sbjct: 710 GDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEE 769
Query: 854 VTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDV 913
+ + + ++T + + + T++EVR+A+ + +A G DG A F+ W ++G DV
Sbjct: 770 IISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDV 829
Query: 914 TAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKS 973
V INQT I LIPKI P DYRPISL +K+++K + RLK
Sbjct: 830 CLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQ 889
Query: 974 FLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWN 1033
L D++ ++Q+AFVPG+ I+DN ++AHE H ++ + G +A+KTD+SKAYDRVEWN
Sbjct: 890 CLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWN 949
Query: 1034 FLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILC 1093
FL+ + Q+GF RW IM CV++VS++VL+NG P P RG+RQGDPLSPYLF+ C
Sbjct: 950 FLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFC 1009
Query: 1094 AEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYE 1153
AEV S+M++ +HG+KIT ISHL FADDS+ RA+ + L I K YE
Sbjct: 1010 AEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYE 1069
Query: 1154 AFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSF 1213
SGQ+IN+ KS + + +P+ R L +LLG+ V GKYLGLP +GR K ++F +
Sbjct: 1070 EASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEY 1129
Query: 1214 VRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYW 1273
+ ++ ++ +GW LS +G+E++IK+IA A+P Y M FLLP+ +CN++ +I +F+W
Sbjct: 1130 IVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWW 1189
Query: 1274 GGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKA 1333
G +N G LGF+ H FN+ALLAKQ WR++ SL+ ++ K
Sbjct: 1190 G------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKG 1231
Query: 1334 RYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGR 1393
YYP +T L AN+G ++SY W S+ + ++Q+G ++G G+ IW D WLP
Sbjct: 1232 LYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLP------ 1285
Query: 1394 VTTPRNANEGP-----QRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQ 1448
T P GP +V +L + W+ + + + D + L A+D
Sbjct: 1286 -TLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDS 1344
Query: 1449 LIWKDSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRA 1508
W + QY+V++GY + N T L +++W++K P+ IWR
Sbjct: 1345 YKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRC 1404
Query: 1509 CKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELP 1568
G L L+ R + D C C DET H + TCS + +W +++ +
Sbjct: 1405 LSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFT 1464
Query: 1569 DNFAGWLEQVLELPNEETMADL-----FNLIWVIWKRRNAWIF 1606
DN + +L+ + + L F ++W +WK RN ++F
Sbjct: 1465 DNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLF 1507
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 687 bits (1772), Expect = 0.0
Identities = 391/1173 (33%), Positives = 610/1173 (51%), Gaps = 70/1173 (5%)
Query: 467 PDLVFLMETRKKAFEIQKTKMPSG--LVHSIGVDCNGEGKSRGGGLACYWSSSLDVNIIS 524
PD++FLMET+ + K G +H++ E + R GGLA +W S L++ +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTV------EPEGRSGGLAIFWKSHLEIEFLY 60
Query: 525 LSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEV 584
N + ++V++ + ++ +YG P + + WE + + W +GDFN++
Sbjct: 61 ADKNLMDLQVSSR--NKVWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDI 118
Query: 585 LKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDRALV 644
+ EK GG + Q F+ + C + ++G +G FTW R +Q +LDR
Sbjct: 119 RSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNR-NDQWVQCKLDRCFG 177
Query: 645 NECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCRHVI 704
N W +P+ H L++F SDH P+ V F + + +R+++ + C VI
Sbjct: 178 NPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ---FRYDKRLDDDPYCIEVI 234
Query: 705 HHSW----PRGGRNITSKLGNVGANLTEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEEN 760
H SW +G + L ++ W ++ N Q RIK
Sbjct: 235 HRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIK-----------------R 277
Query: 761 LKKGKEAEKELE-----------NLLKL----EEIKWSQRSRATWLAHGDRNTSFFHKKA 805
L+K +AEK ++ + L L EE+ W Q+SR WLA GD+NT FFH
Sbjct: 278 LRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATV 337
Query: 806 SQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLVH-----G 860
+ +N ++ + D+ + +T D ++ + +FE+LF +T I+T+ H
Sbjct: 338 HSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTY-----ILTHNNHLEGLQA 392
Query: 861 RITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVLSI 920
++T+E + + TE EV A+ ++ A G DG ALFFQ+ W +V + + ++
Sbjct: 393 KVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGF 452
Query: 921 LNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDIVE 980
G N T I LIPKI P D RPISL +V++K+++K + RLK L IV
Sbjct: 453 FETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVS 512
Query: 981 ETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKSTLE 1040
TQSAFVP RLI+DN ++AHE H +R R K MA KTDMSKAYDRVEW FL++ +
Sbjct: 513 TTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMT 572
Query: 1041 QMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFSSM 1100
+GF +W + IMNCV++VS+ VL+NGQP P RG+RQGDPLSP LF+LC E +
Sbjct: 573 ALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHI 632
Query: 1101 IKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQRI 1160
+ AG + GI+ + ++HL FADD++L+ +ATK+E L + Y SGQ I
Sbjct: 633 LNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMI 692
Query: 1161 NFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERIWK 1220
N +KS ++ +NV ++ G+ GKYLGLP + SK +F F++E++
Sbjct: 693 NLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQS 752
Query: 1221 KLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSADSR 1280
+L GW K LS+ G+EVL+KSIA A+P YVM F LP LC ++ ++ F+W R
Sbjct: 753 RLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKR 812
Query: 1281 KLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPKST 1340
K++W+ W L PK+ GG GF+ FN+ALLAKQ WR++ + SL +V ++RY+ S
Sbjct: 813 KIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSD 872
Query: 1341 PLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPRNA 1400
L A RG+ SY W+S+ RE++ +G +G G+K +W D+WL + S+ R R
Sbjct: 873 FLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRF 932
Query: 1401 NEGPQRVCELILAGRGMWNESLIKATFSGYDASKIL-QIPLRGTHAKDQLIWKDSGVGQY 1459
+V +LI WN ++++ F D IL Q PL +D W S G Y
Sbjct: 933 INVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPL--FFKEDSFCWLHSHNGLY 990
Query: 1460 SVKAGYR-IQRSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPVRMN 1518
SVK GY + + ++ + ++L+ K+W + T P+ +W+A G +PV
Sbjct: 991 SVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDR 1050
Query: 1519 LKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNFAGWLEQV 1578
L+ RG+ D C C E+ET H L C R++W +HL+ E ++ + ++
Sbjct: 1051 LRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLS-SAGSEFSNSVYTNMSRL 1109
Query: 1579 LELPNEETMADLFN-----LIWVIWKRRNAWIF 1606
++L + + ++W +WK RNA +F
Sbjct: 1110 IDLTQQNDLPHHLRFVSPWILWFLWKNRNALLF 1142
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 678 bits (1750), Expect = 0.0
Identities = 392/1158 (33%), Positives = 613/1158 (52%), Gaps = 50/1158 (4%)
Query: 473 METRKKAFEIQKTKMPSGLVHSIGVDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQM 532
+ET + ++ K G + I NG R GGLA W +++ +++IS I
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNG----RSGGLALMWKNNVSLSLISQDERLIDS 245
Query: 533 EVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTG 592
VT + ++ +YGHP ++ + W+ ++ ++ + WL +GDFNE+L ++EK G
Sbjct: 246 HVTFN--NKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIG 303
Query: 593 GNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHW 652
G + F+ + C + DM G +F+W R T +T++ LDR +N WT +
Sbjct: 304 GPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFINSAWTATF 362
Query: 653 PHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGG 712
P+ LD SDH P+ V F ++ ++ K L+RF+ + + ++ SW R
Sbjct: 363 PYAETEFLDFTGSDHKPVLVHFNESFPRRSK---LFRFDNRLIDIPTFKRIVQTSW-RTN 418
Query: 713 RN-----ITSKLGNVGANLTEWAEATFGNIQKRIKS-QLGIIKRIQAAEQTEENLKKGKE 766
RN IT ++ + + A+ N ++RIK Q + + +++ + + L +
Sbjct: 419 RNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIP--Q 476
Query: 767 AEKELENLLKLEEIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWT 826
++ L EEI W Q+SR W+ GD+NT +FH R +N + I DD+GR +T
Sbjct: 477 LQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFT 536
Query: 827 EEEDIEEVLTKYFEDLFKAT----SPDDC----EIVTNLVHGRITNEHKEIMEEPFTEEE 878
+++I +F ++F SP D VTN V+ +T E F++ E
Sbjct: 537 GDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKE--------FSDTE 588
Query: 879 VREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALI 938
+ +A+ ++ KA G DG A F++ W IVGYDV +V IN T I +I
Sbjct: 589 IYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMI 648
Query: 939 PKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAII 998
PKI P+ DYRPI+L NV++K+++K + NRLKS L IV ++Q+AF+PGR+I DN +I
Sbjct: 649 PKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMI 708
Query: 999 AHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVST 1058
AHE H ++ + R K MA+KTD+SKAYDRVEW+FL++T+ GF +W IM V +
Sbjct: 709 AHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKS 768
Query: 1059 VSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPR 1118
V + VL+NG P P RG+RQGDPLSPYLFILC ++ S +I + ++G L G++I
Sbjct: 769 VHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNG 828
Query: 1119 APMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRV 1178
AP I+HL FADDS+ +A L D+ YE +SGQ+IN KS ++ V +
Sbjct: 829 APAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQ 888
Query: 1179 HELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVL 1238
+L+Q+L + GKYLGLP GR K ++F ++ +R+ K+ W + LS +G+E++
Sbjct: 889 SKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIM 948
Query: 1239 IKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGG 1298
+KS+A A+P Y M F LP + +++E ++ +F+W +++ R + W+ W L K GG
Sbjct: 949 LKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGG 1008
Query: 1299 LGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVH 1358
LGFR FN ALLAKQ WRLI NSL +V+KARY+ + L+A SY W S+
Sbjct: 1009 LGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLL 1068
Query: 1359 AAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRG-- 1416
+++KG+ +G G+ I I L N P N E + + L R
Sbjct: 1069 DGIALLKKGTRHLIGDGQNIRI----GLDNIVDSHPPRPLNTEETYKEMTINNLFERKGS 1124
Query: 1417 --MWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNT 1474
W++S I D I +I L + D++IW + G+Y+V++GY + +T
Sbjct: 1125 YYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPST 1184
Query: 1475 H-PATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCC 1533
+ PA P +L ++W + +P+ +WRA L L RGM +D CP C
Sbjct: 1185 NIPAINPP-HGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRC 1243
Query: 1534 GEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNFAGWLEQVLELPNEETMADLFN- 1592
E+E+ HAL TC W+ S +L N+ + ++F + +L + TM+D
Sbjct: 1244 HRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKL 1303
Query: 1593 ----LIWVIWKRRNAWIF 1606
LIW IWK RN +F
Sbjct: 1304 LPVWLIWRIWKARNNVVF 1321
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 661 bits (1706), Expect = 0.0
Identities = 367/961 (38%), Positives = 546/961 (56%), Gaps = 40/961 (4%)
Query: 665 SDHNPIYVIFL-KAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWP-----RGGRNITSK 718
SDH+P+ K R K+ +RF++ W+ ++ I W R G+ + K
Sbjct: 4 SDHSPVIATIADKIPRGKQN----FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFV-EK 58
Query: 719 LGNVGANLTEWAEAT--FGNIQ-KRIKSQLGIIKRI--QAAEQTEENLKKGKEAEKELEN 773
L N +++W ++ FG + +K++L + +R ++ E+ E + KEA ++
Sbjct: 59 LTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTLRLKEAYRD--- 115
Query: 774 LLKLEEIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEE 833
EE W Q+SR+ W+ GD N+ FFH QR+ RN I + D+ G E++DI+
Sbjct: 116 ----EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQN 171
Query: 834 VLTKYFEDLFKATSPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHG 893
+ YF++LF +P + V IT+ +++ TE EVR AL +HP KA G
Sbjct: 172 IAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPG 231
Query: 894 ADGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPI 953
DG ALFFQK W+I+ D+ + V S L +G +N T I LIPK ++P+ + RPI
Sbjct: 232 PDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPI 291
Query: 954 SL*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGV 1013
SL NV +K+++K + RLK+ L +++ ETQSAFV GRLI+DN +IA E FH +R +
Sbjct: 292 SLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCK 351
Query: 1014 KGVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSF 1073
MA+KTDMSKAYD+VEWNF+++ L +MGF ++W + IM C++TV ++VL+NGQP
Sbjct: 352 DKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLI 411
Query: 1074 KPERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSIL 1133
PERGLRQGDPLSPYLFILC EV + I+ ++ GIK+ +P +SHL FADDS+
Sbjct: 412 IPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLF 471
Query: 1134 LARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKH 1193
+A KE+ ++ +I+K YE+ SGQ+INF KS + V + +++ +LG+ +
Sbjct: 472 FCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGM 531
Query: 1194 GKYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGL 1253
G YLGLP +G SKT+VFSFVR+R+ ++ GW K LS+ G+EV+IKS+A +P YVM
Sbjct: 532 GSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSC 591
Query: 1254 FLLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLA 1313
F LP + +++ + F+W + DSR ++W+ WD L + K+ GGLGFR+ FN ALLA
Sbjct: 592 FRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLA 651
Query: 1314 KQWWRLINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVG 1373
KQ WRLI +SL +V K RY+ KS PL++ + + SY W+S+ +AR ++ KG I +VG
Sbjct: 652 KQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVG 711
Query: 1374 TGEKIHIWNDQWLPNSSSGRVTTPRNANEGPQ------RVCELILAGRGMWNESLIKATF 1427
+G I +WND W+P PR A G +V LI + WN L+K F
Sbjct: 712 SGASISVWNDPWIP------AQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELF 765
Query: 1428 SGYDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSN 1487
D I +P+ + +D L W + G Y+VK+GY R N T G + +
Sbjct: 766 DPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLN--EGTTLIGPDLTT 823
Query: 1488 LWKKVWKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTC 1547
L +WKV+ P+ +W+ G +PV NL++RG+ D C CG +E+ H L C
Sbjct: 824 LKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQC 883
Query: 1548 SSIRRLWFASHLNLHLNEELPDN--FAGWLEQVLELPNEETMADLFNLIWVIWKRRNAWI 1605
R++W S + P N F +P+ A +IW IWK RN +
Sbjct: 884 HPARQIWALSQIPT-APGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEKV 942
Query: 1606 F 1606
F
Sbjct: 943 F 943
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 643 bits (1659), Expect = 0.0
Identities = 384/1183 (32%), Positives = 592/1183 (49%), Gaps = 31/1183 (2%)
Query: 439 MKMISWNCRGLGTPR--AVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHSIG 496
M ++SWNC+GLG + + L ++ P+++FLMET+ + + + G
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 497 VDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQ 556
V+ G GGLA +W +D+ I N I ++ + V+ +YG+P
Sbjct: 61 VNPIG----LSGGLALFWKKGVDIVIKYADKNLIDFQIQFG--SHEFYVSCVYGNPAFSD 114
Query: 557 KWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDM 616
K WE I ++ + + PW LGDFN +L + EK GG F + +D C + ++
Sbjct: 115 KHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLEL 174
Query: 617 GFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLK 676
G FTW + IQ RLDR N+ W +P ++ LD+ SDH P+ V K
Sbjct: 175 PSIGNPFTWGG-KTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTK 233
Query: 677 AKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRGGRN----ITSKLGNVGANLTEWAEA 732
K + + +RF++ + + + I +W RN + KL + + L+ W +
Sbjct: 234 TKEEYRGN---FRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKE 290
Query: 733 TFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLA 792
N RI ++ Q++ +L + +L EE+ WSQ+SRA W+
Sbjct: 291 NNINSSTRITQARAALELEQSSGFPRADLVFS--LKNDLCKANHDEEVFWSQKSRAKWMH 348
Query: 793 HGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCE 852
GD+NTSFFH + + I ++ D G +E + + YF DLFK+T P
Sbjct: 349 SGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFV 408
Query: 853 IVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYD 912
+ R+T + ++ E+REA+ + + A G DG FFQK+WSI+
Sbjct: 409 DLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQ 468
Query: 913 VTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLK 972
VT ++ + G N T + L+PK KKP D RPISL +V++K+++K + RL+
Sbjct: 469 VTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQ 528
Query: 973 SFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEW 1032
FL D+V QSAFV RLI DN +IAHE H +R KG +A+K++MSKA+DRVEW
Sbjct: 529 PFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEW 588
Query: 1033 NFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFIL 1092
N++++ L+ +GF Q+W IM +S+VS+ VL+N + + P RGLRQGDPLSP+LF+L
Sbjct: 589 NYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVL 648
Query: 1093 CAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGY 1152
C+E + ++ G+L GI+ + P I HL FADDS+ + +A KEE V+ I K Y
Sbjct: 649 CSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVY 708
Query: 1153 EAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFS 1212
+GQRIN+DKS ++ V ++ LG+ YLGLP SK Q+
Sbjct: 709 GDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLD 768
Query: 1213 FVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFY 1272
++++R+ +L GW + LS G+E L+K+ A A+ Y M F L T C + ++ F+
Sbjct: 769 YIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFW 828
Query: 1273 WGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIK 1332
W RK +W+ + + K GGLGFR SFN+ALLAKQ WRL+ NSL + K
Sbjct: 829 WNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFK 888
Query: 1333 ARYYPKSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSG 1392
+RYY + L+A SY W+S+ R+++ KG KVG G +W D W+ ++
Sbjct: 889 SRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPR 948
Query: 1393 RVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSGYDASKIL-QIPLRGTHAKDQLIW 1451
+ RV +LI ++ F D I+ + P+ D +W
Sbjct: 949 LPLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPV--VSMDDFWVW 1006
Query: 1452 KDSGVGQYSVKAGYRIQRSQNN---THPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRA 1508
S G+YSVK+GY + N A TN L +K+W T P+ +WR
Sbjct: 1007 LHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTN--GLKEKIWSTLTSPKIKLFLWRI 1064
Query: 1509 CKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELP 1568
LPV + RRGM +D +C CGEE E+ H L TCS R++W S +
Sbjct: 1065 LSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQN 1124
Query: 1569 DNFAGWLEQVLELPNEETMADLFN-----LIWVIWKRRNAWIF 1606
+ ++ +LEL + + + ++W +WK R+ F
Sbjct: 1125 SSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFF 1167
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 642 bits (1657), Expect = 0.0
Identities = 362/1031 (35%), Positives = 559/1031 (54%), Gaps = 59/1031 (5%)
Query: 572 EVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSNMRPT 631
E PWL +GDFN+ + E + + F+E + C L+D+GF +T+ N + +
Sbjct: 153 EDPWLMIGDFNDAMWQIEHRSRVKHSERQMRDFREVLVECDLQDIGFQCVPWTYDNNQAS 212
Query: 632 PNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRLYRFE 691
PN ++ RLDRA+ + W + ++ HL SDH P+ ++ Q++++ ++ FE
Sbjct: 213 PNNVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVPL-LLEKGGNMQQRRRSKINCFE 271
Query: 692 EMWLQEEDCRHVIHHSWPRGGR-----NITSKLGNVGANLTEWAEATFGNIQKRIKSQLG 746
+W + + + H SW GG ++ +KL NL W+ GNI+K I+
Sbjct: 272 AVWERVKSFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIKKSIERCRR 331
Query: 747 IIK--RIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNTSFFHKK 804
++ R++ E +E ++ + K L+ LL EEI W QRSR TWL GDRNT +FH K
Sbjct: 332 ELEEMRMRGREDSEPDVHRLKIF---LQELLHREEIWWKQRSRITWLKEGDRNTRYFHLK 388
Query: 805 ASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLVHGRITN 864
AS R +N I ++ ++++ +LTK
Sbjct: 389 ASWRARKNLIKKLR-------RSDDEMNGMLTK--------------------------- 414
Query: 865 EHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVLSILNDG 924
PFT+EE+ +AL ++ P KA G DG PA FFQ+ W ++ DV V G
Sbjct: 415 --------PFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFETG 466
Query: 925 ADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDIVEETQS 984
+N T+I +IPK P KD+RP+SL NVI+K+V K + NRL+ LQ+I+ ETQS
Sbjct: 467 EWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQS 526
Query: 985 AFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGF 1044
AFVPGR+ITDNA++A ECFH + + TR + ALK D+SKAYDRV+W FL L+++GF
Sbjct: 527 AFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGF 586
Query: 1045 TQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAK 1104
W IM+CV++V + V LNG F P RGLR+GDPL+PYLF+ A+ S++++ +
Sbjct: 587 GNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRR 646
Query: 1105 VAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQRINFDK 1164
+ +K+ AP +SHL FADDS+L +A +A + + + YE +GQ IN +
Sbjct: 647 RDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKE 706
Query: 1165 SELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKG 1224
L S P R ++ +L V+ K LGLPT GR K + F ++ER K+L
Sbjct: 707 CSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTD 766
Query: 1225 WKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSADSRKLNW 1284
W E+ LS +G+E LIKS+AQA+P+Y MG+F +P C + E+++ +F+WG +K++W
Sbjct: 767 WSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHW 826
Query: 1285 IRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPKSTPLEA 1344
I W+ L +PK +GGLGFR FN+ALLA+Q WRLI +SL +V+KA+YYP T +
Sbjct: 827 IAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDT 886
Query: 1345 NRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPRNANEGP 1404
+ SS WK + E+++KG IW++G G K IW + W+ + + ++ + N
Sbjct: 887 AFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWNR-V 945
Query: 1405 QRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAG 1464
V ELI+ WNE LI+ DA +IL+I + +D W G +SV++
Sbjct: 946 IYVRELIVTDTKTWNEPLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSV 1005
Query: 1465 YRIQ---RSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPVRMNLKR 1521
YR+ + + ++ G + +W VWK P+ W+ + L N K+
Sbjct: 1006 YRLAWNLARKTSEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKK 1065
Query: 1522 RGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNFAG--WLEQVL 1579
R +++ CP CG+++ET HA + C+ + L + + L +E + G WL +L
Sbjct: 1066 RKIEMFGTCPICGQKEETGFHATVECTLAKALRASLREHWTLPDESLFSMTGPDWLLVLL 1125
Query: 1580 ELPNEETMADL 1590
+ + E A L
Sbjct: 1126 DRLSSEKKAQL 1136
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 637 bits (1643), Expect = e-180
Identities = 374/1142 (32%), Positives = 590/1142 (50%), Gaps = 58/1142 (5%)
Query: 473 METRKKAFEIQKTKMPSGLVHSIGVDCNGEGKSRGGGLACYWSSSLDVNIISLSSNHIQM 532
MET+ + I KT G H + G GGLA YW +++V I+ + N
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEG----LSGGLALYWKENVEVEILEAAPN---- 52
Query: 533 EVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLCLGDFNEVLKSSEKTG 592
ID++ V W+ I L WL GDFN++L +SEK G
Sbjct: 53 -----FIDNRSVF---------------WDKISSLGAQRSSAWLLTGDFNDILDNSEKQG 92
Query: 593 GNPINFVGA-QAFQEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDRALVNECWTEH 651
G P+ + G AF+ + GL D+ +G +W R + + I+ RLDRAL N W+E
Sbjct: 93 G-PLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYS-HFIKSRLDRALGNCSWSEL 150
Query: 652 WPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCRHVIHHSWPRG 711
+P + +L SDH P+ F ++ K +RF+ ++E+ R ++ W
Sbjct: 151 FPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSKP---FRFDRRLREKEEIRALVKEVWELA 207
Query: 712 GRN-ITSKLGNVGANLTEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEENLKKGKEAEKE 770
++ + K+ ++ +W + N K IK ++ +A+ + +L +E
Sbjct: 208 RQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGS--ITQE 265
Query: 771 LENLLKLEEIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDDRGRAWTEEED 830
LE + EE+ W Q SR WL GDRN +FH R+ N+++ I D G+ + EEE
Sbjct: 266 LEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQ 325
Query: 831 IEEVLTKYFEDLFKATSPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVREALKKMHPTK 890
I ++ YF+++F ++ D ++V + I++ E + + + E++EAL + K
Sbjct: 326 IASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADK 385
Query: 891 AHGADGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPKIKKPSMAKDY 950
A G DG A FF +W I+ DV+ + S D + +N+T + LIPKI P DY
Sbjct: 386 APGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDY 445
Query: 951 RPISL*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAHECFHYMRRKT 1010
RPI+L NV +K+V K + RL+ +L +++ QSAFVPGR I DN +I HE H++R
Sbjct: 446 RPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSG 505
Query: 1011 RGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPC 1070
MA+KTDMSKAYDR++WNFL+ L ++GF +W +M CV TVS+ L+NG P
Sbjct: 506 AKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQ 565
Query: 1071 RSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAPMISHLFFADD 1130
S P RGLRQGDPLSPYLFILC EV S + + GV+ GI++ +P ++HL FADD
Sbjct: 566 GSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADD 625
Query: 1131 SILLARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHELEQLLGVKAV 1190
++ + L +I+K YE SGQ IN KS ++ S P ++ L +
Sbjct: 626 TMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNE 685
Query: 1191 EKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIKSIAQAIPSYV 1250
GKYLGLP GR K +FS + +RI ++ W + LS +G+++L+K++ ++PSY
Sbjct: 686 GGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYA 745
Query: 1251 MGLFLLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKA 1310
M F LP++LC Q++ ++ F+W D RK+ W+ WD L P N GGLGFR
Sbjct: 746 MMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE----- 800
Query: 1311 LLAKQWWRLINRENSLMVQVIKARYYPKSTPLEANRGTN-SSYLWKSVHAAREVIQKGSI 1369
AK WR++ +SL+ +V+ +Y S+ ++ + + +S+ W+ + A R++++KG
Sbjct: 801 --AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLG 858
Query: 1370 WKVGTGEKIHIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRGMWNESLIKATFSG 1429
W +G G+ I++W + WL SS P V +LI WN I+
Sbjct: 859 WSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQ 918
Query: 1430 YDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTHPATGPSGTNHSNLW 1489
Y+ +I +I + +D L+W G+Y+ K GY + ++ N+ PA+ N
Sbjct: 919 YE-DQIRKITINALPLQDSLVWLPVKSGEYTTKTGYAL--AKLNSFPAS----QLDFNWQ 971
Query: 1490 KKVWKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSS 1549
K +WK+ T P+ +W+A KG LPV L RR ++ + C CG + E++ H +L C
Sbjct: 972 KNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPY 1030
Query: 1550 IRRLWFASHLNLHLNEELPDNFAGWLEQVLEL----PNEETMADLFN-LIWVIWKRRNAW 1604
+++W + + + +E + A L + P A L+ L+W +WK RN
Sbjct: 1031 AKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRL 1090
Query: 1605 IF 1606
IF
Sbjct: 1091 IF 1092
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 630 bits (1626), Expect = e-178
Identities = 380/1121 (33%), Positives = 596/1121 (52%), Gaps = 67/1121 (5%)
Query: 508 GGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKKL 567
GGLA W SS+ V++ + N + +V ++ V+ +YG P+ ++ + WE I ++
Sbjct: 29 GGLALLWKSSVQVDLKFVDKNLMDAQVQFGAVN--FCVSCVYGDPDRSKRSQAWERISRI 86
Query: 568 TPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSN 627
W GDFN++L + EK GG + + +AF E + C L +M G FTW+
Sbjct: 87 GVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAG 146
Query: 628 MRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRL 687
R + IQ RLDRA N+ W +P ++ + LD SDH P+ + + ++ + +
Sbjct: 147 RRGD-HWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ--- 202
Query: 688 YRFEEMWLQEEDCRHVIHHSWPRG--GRNIT--SKLGNVGANLTEWAEATFGNIQKRIKS 743
+RF++ +L +ED + I +W RG G NI+ +L +L+ W + Q + S
Sbjct: 203 FRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKK------QNNLNS 256
Query: 744 QLGIIKRIQAAEQTEENL-----KKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNT 798
L I +++AA + E++L ++ +K+L + EE W Q+SR WL G+RN+
Sbjct: 257 -LDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNS 315
Query: 799 SFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLV 858
+FH Q + R I ++ D G T E EV YF +LFK+++P + +
Sbjct: 316 KYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGL 375
Query: 859 HGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVL 918
R++ E + + +E++EA+ + P A G DG ALFFQ +WS VG VT++V
Sbjct: 376 VPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVK 435
Query: 919 SILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDI 978
DG N T + LIPK + P+ D RPISL +V++K+++K +A RL+ +L +I
Sbjct: 436 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEI 495
Query: 979 VEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKST 1038
V +TQSAFV RLITDN ++AHE H ++ R MA+K+DMSKAYDRVEW++L+S
Sbjct: 496 VSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSL 555
Query: 1039 LEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFS 1098
L +GF +W N IM CVS+V++ VL+N P +RGLRQGDPLSP+LF+LC E +
Sbjct: 556 LLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLT 615
Query: 1099 SMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQ 1158
++ G L GI+ + PM+ HL FADDS+ L +A++E+++VL I+K Y +GQ
Sbjct: 616 HLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQ 675
Query: 1159 RINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERI 1218
IN +KS ++ V + LG+ G YLGLP SK + ++++R+
Sbjct: 676 TINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRL 735
Query: 1219 WKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSAD 1278
+KL W + LS+ G+EVL+KS+A A+P + M F LP T C +E + SF+W
Sbjct: 736 KEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDH 795
Query: 1279 SRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPK 1338
SRK++W W+ L PK+ GGLGFR SFN+ALLAKQ WRL++ + L+ +++K+RY+
Sbjct: 796 SRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDA 855
Query: 1339 STPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPR 1398
+ L+A S+ W+S+ RE++ KG +VG G + +W D W+ ++
Sbjct: 856 TDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKN 915
Query: 1399 NANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWKDSGVGQ 1458
+ +V L+ G W+E ++ F D +I I + A D +WK + G
Sbjct: 916 LIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFFVWKLNKSGD 974
Query: 1459 YSVKAGYRI---QRSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPV 1515
+SVK+ Y + +SQN + T L +VW ++T P+ +W+
Sbjct: 975 FSVKSAYWLAYQTKSQNLRSEVSMQPST--LGLKTQVWNLQTDPKIKIFLWKV------- 1025
Query: 1516 RMNLKRRGMDLDTKCPCCGEEDETTTHALLTCSSIRRLWFASHLNLHLNEELPDNFAGW- 1574
CGE E+T H L C R++W S PD F+
Sbjct: 1026 -----------------CGELGESTNHTLFLCPLSRQIWALSDYPFP-----PDGFSNGS 1063
Query: 1575 ----LEQVLE-LPNEETMADLFN----LIWVIWKRRNAWIF 1606
+ +LE N+E +L ++W IWK RN++IF
Sbjct: 1064 IYSNINHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIF 1104
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 629 bits (1621), Expect = e-178
Identities = 363/1031 (35%), Positives = 568/1031 (54%), Gaps = 28/1031 (2%)
Query: 508 GGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKKL 567
GGLA W SS+ V++ + N + +V ++ V+ +YG P+ ++ + WE I ++
Sbjct: 32 GGLALLWKSSVQVDLKFVDKNLMDAQVQFGAVN--FCVSCVYGDPDRSKRSQAWERISRI 89
Query: 568 TPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSN 627
W GDFN++L + EK GG + + +AF E + C L +M G FTW+
Sbjct: 90 GVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAG 149
Query: 628 MRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRL 687
R + IQ RLDRA N+ W +P ++ + LD SDH P+ + + ++ + +
Sbjct: 150 RRGD-HWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ--- 205
Query: 688 YRFEEMWLQEEDCRHVIHHSWPRG--GRNIT--SKLGNVGANLTEWAEATFGNIQKRIKS 743
+RF++ +L +ED + I +W RG G NI+ +L +L+ W + Q + S
Sbjct: 206 FRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKK------QNNLNS 259
Query: 744 QLGIIKRIQAAEQTEENL-----KKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNT 798
L I +++AA + E++L ++ +K+L + EE W Q+SR WL G+RN+
Sbjct: 260 -LDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNS 318
Query: 799 SFFHKKASQRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLV 858
+FH Q + R I ++ D G T E EV YF +LFK+++P + +
Sbjct: 319 KYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGL 378
Query: 859 HGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVL 918
R++ E + + +E++EA+ + P A G DG ALFFQ +WS VG VT++V
Sbjct: 379 VPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVK 438
Query: 919 SILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDI 978
DG N T + LIPK + P+ D RPISL +V++K+++K +A RL+ +L +I
Sbjct: 439 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEI 498
Query: 979 VEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKST 1038
V +TQSAFV RLITDN ++AHE H ++ R MA+K+DMSKAYDRVEW++L+S
Sbjct: 499 VSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSL 558
Query: 1039 LEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFS 1098
L +GF +W N IM CVS+V++ VL+N P +RGLRQGDPLSP+LF+LC E +
Sbjct: 559 LLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLT 618
Query: 1099 SMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQ 1158
++ G L GI+ + PM+ HL FADDS+ L +A++E+++VL I+K Y +GQ
Sbjct: 619 HLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQ 678
Query: 1159 RINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERI 1218
IN +KS ++ V + LG+ G YLGLP SK + ++++R+
Sbjct: 679 TINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRL 738
Query: 1219 WKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSAD 1278
+KL W + LS+ G+EVL+KS+A A+P + M F LP T C +E + SF+W
Sbjct: 739 KEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDH 798
Query: 1279 SRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPK 1338
SRK++W W+ L PK+ GGLGFR SFN+ALLAKQ WRL++ + L+ +++K+RY+
Sbjct: 799 SRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDA 858
Query: 1339 STPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPR 1398
+ L+A S+ W+S+ RE++ KG +VG G + +W D W+ ++
Sbjct: 859 TDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKN 918
Query: 1399 NANEGPQRVCELILAGRGMWNESLIKATFSGYDASKILQIPLRGTHAKDQLIWKDSGVGQ 1458
+ +V L+ G W+E ++ F D +I I + A D +WK + G
Sbjct: 919 LIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFFVWKLNKSGD 977
Query: 1459 YSVKAGYRI---QRSQNNTHPATGPSGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPV 1515
+SVK+ Y + +SQN + T L +VW ++T P+ +W+ G+LPV
Sbjct: 978 FSVKSAYWLAYQTKSQNLRSEVSMQPST--LGLKTQVWNLQTDPKIKIFLWKVLSGILPV 1035
Query: 1516 RMNLKRRGMDL 1526
NL RGM L
Sbjct: 1036 AENLNGRGMSL 1046
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 620 bits (1599), Expect = e-175
Identities = 337/917 (36%), Positives = 521/917 (56%), Gaps = 28/917 (3%)
Query: 402 ERLRDE---HSYSHGNRGLPCVSESQIGSGEDCGAVPPRAMKMISWNCRGLGTPRAVGAL 458
+RL D+ H++ ++ C QI S C + MK+I+WNCRGLG V L
Sbjct: 409 QRLMDQINWHAHEPQDKLWTCTGVKQI-SQASCFCINKYPMKIIAWNCRGLGNGPTVRGL 467
Query: 459 RKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHSIGVDCNGEGKSRGGGLACYWSSSL 518
L + PD++FL T+ ++Q + G+ + + DC G + GGLA +W +
Sbjct: 468 LNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKDCQG----KSGGLAVFWKKEI 523
Query: 519 DVNIISLSSNHIQMEVTTTIIDSKMV-VTGIYGHPEAPQKWRTWELIKKLTPDPEVPWLC 577
++ + ++S + M+V D TG+YG P + +K TW+ ++ L WLC
Sbjct: 524 NLRLRTVS--RLFMDVDVMEDDGFWWRFTGVYGEPRSDKKDLTWKALRTLNATKGELWLC 581
Query: 578 LGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTW-SNMRPTPNTIQ 636
+GDFNEVL S EK G+ F++ +D C L ++GF+G FTW +N I+
Sbjct: 582 VGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTWRNNWCVRDGYIR 641
Query: 637 ERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYV-----IFLKAKRQKKKKIRLYRFE 691
ERLDRA+ + W +P V D +SDH+P+ V + R K +RFE
Sbjct: 642 ERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGRSKPG----FRFE 697
Query: 692 EMWLQEEDCRHVIHHSW-----PRGGRNITSKLGNVGANLTEWAEATFGNIQKRIKSQLG 746
W +EE C ++ ++W PRGG+ + + V ANL +W++ G+++KRIK
Sbjct: 698 AGWAREEHCAPIVENAWKLSVGPRGGK-VMDAIREVAANLWDWSKNFLGDLEKRIKKAKQ 756
Query: 747 IIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNTSFFHKKAS 806
++ + + + + + L+ L + E+ W QR+ WL GDRNT FFH+ AS
Sbjct: 757 ALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHECAS 816
Query: 807 QRKDRNSIARITDDRGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLVHGRITNEH 866
+RK RN I ++ D G T+E +++++++ LF A P + + + V R+T+
Sbjct: 817 ERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTSTM 876
Query: 867 KEIMEEPFTEEEVREALKKMHPTKAH-GADGTPALFFQKFWSIVGYDVTAQVLSILNDGA 925
+ + + T EE+++AL + KA G+DG PALF+++FW VG D+ +V L G
Sbjct: 877 NDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGE 936
Query: 926 DATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDIVEETQSA 985
N T++ LIPK+ P KD RPISL NV++K+ +K +ANRLK L +I+ Q A
Sbjct: 937 MPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIA 996
Query: 986 FVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGFT 1045
FVP R+ITDN ++A+E H+++ K RG G A+K MSKAYDRVEW FL+ + ++GF
Sbjct: 997 FVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFD 1056
Query: 1046 QRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAKV 1105
+ W ++M CV++V++++ +NG+ P GLRQGDP+SPYLF +CAE FS+++ A
Sbjct: 1057 RNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGFSTLLNAAE 1116
Query: 1106 AAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQRINFDKS 1165
G L IK+ AP I+HL FADDS+LL + + A L +++ YE SG+ IN +KS
Sbjct: 1117 ERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKS 1176
Query: 1166 ELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKGW 1225
+ SRN+ L + + KYLGLP +GRSK + S+++ER+WKK++GW
Sbjct: 1177 SIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGW 1236
Query: 1226 KEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSADSRKLNWI 1285
KEK LSR+G++VLIK++AQAIP++ M F L LC+++ +I F+W K++WI
Sbjct: 1237 KEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFFWAQQERENKMHWI 1296
Query: 1286 RWDTLATPKNMGGLGFR 1302
W+ L + K GG FR
Sbjct: 1297 AWEHLCSRKEKGGFFFR 1313
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 602 bits (1552), Expect = e-170
Identities = 330/974 (33%), Positives = 513/974 (51%), Gaps = 15/974 (1%)
Query: 582 NEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWSNMRPTPNTIQERLDR 641
NE+L +SEK GG P + F+ + GL D+ +SG F+W MR +++RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMR-YDWFVRQRLDR 94
Query: 642 ALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIRLYRFEEMWLQEEDCR 701
A+ N W E +P +L SDH P+ V+F+ R K++ +RF+ +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPL-VVFVDEARVKRRG--QFRFDNRLRDNDVVN 151
Query: 702 HVIHHSWPRGG-RNITSKLGNVGANLTEWAEATFGNIQKRIKSQLGIIKRIQAAEQTEEN 760
+I +W G ++ +K+ + W N + I+ ++ A+
Sbjct: 152 ALIQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPNPT 211
Query: 761 LKKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNTSFFHKKASQRKDRNSIARITDD 820
A LE+ KLEE W QRSR WL GDRNT +FH R+ +N + + D
Sbjct: 212 TIGALTAT--LEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDI 269
Query: 821 RGRAWTEEEDIEEVLTKYFEDLFKATSPDDCEIVTNLVHGRITNEHKEIMEEPFTEEEVR 880
G A EE I ++++ YF+ +F + S D +V + ++ + + +EEV+
Sbjct: 270 NGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVK 329
Query: 881 EALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQVLSILNDGADATHINQTLIALIPK 940
+A+ ++ +KA G DG A F+ +W I+ DV ++ +N+T I LIPK
Sbjct: 330 DAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPK 389
Query: 941 IKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQDIVEETQSAFVPGRLITDNAIIAH 1000
P DYRPI+L N+ +K+V K + R++ L ++ E QSAFVPGR+I+DN +I H
Sbjct: 390 DLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITH 449
Query: 1001 ECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKSTLEQMGFTQRWTNLIMNCVSTVS 1060
E H++R + MA+KTDMSKAYDRVEW+FLK L++ GF W + ++ CV++VS
Sbjct: 450 EVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVS 509
Query: 1061 FQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVFSSMIKAKVAAGVLHGIKITPRAP 1120
+ L+NG P P RGLRQGDPLSP LFILC EV S + L G++++ P
Sbjct: 510 YSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGP 569
Query: 1121 MISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSGQRINFDKSELSTSRNVPSTRVHE 1180
++HL FADD++ +++ E L +I+ Y SGQ INF KS ++ S P + +
Sbjct: 570 RVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQ 629
Query: 1181 LEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRERIWKKLKGWKEKALSRSGREVLIK 1240
++++L ++ GKYLGLP GR K +F + ++I +K W + LS++G++V++K
Sbjct: 630 VKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLK 689
Query: 1241 SIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSADSRKLNWIRWDTLATPKNMGGLG 1300
++ ++P Y M F LPS LC +++ ++ F+W D RK +W+ W L PKN GGLG
Sbjct: 690 AVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLG 749
Query: 1301 FRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYPKSTPLEANRGTNSSYLWKSVHAA 1360
FR N +LLAK WRL+N SL+ +++ +Y S+ +E + S+ W+S+ A
Sbjct: 750 FRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAG 809
Query: 1361 REVIQKGSIWKVGTGEKIHIWNDQWLPNSSSGRVTTPRNANEGPQRVCELILAGRGMWNE 1420
RE++++G W + GEK+ IWND WL S P RV LI W+
Sbjct: 810 REILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDW 869
Query: 1421 SLIKATFSGYDASKILQIPLRGTHAKDQLIWKDSGVGQYSVKAGYRIQRSQNNTHPATGP 1480
+ I Y+ + I Q+P + D+L W GQY+ ++GY I A+ P
Sbjct: 870 NKIAVILPNYE-NLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGI------ASVASIP 922
Query: 1481 SGTNHSNLWKKVWKVKTLPRCNEIIWRACKGVLPVRMNLKRRGMDLDTKCPCCGEEDETT 1540
N +WK++TLP+ ++W+A LPV + L RR + C CG E+T
Sbjct: 923 IPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCG-APEST 981
Query: 1541 THALLTCSSIRRLW 1554
TH C ++W
Sbjct: 982 THLFFHCEFAAQVW 995
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 581 bits (1497), Expect = e-164
Identities = 324/941 (34%), Positives = 518/941 (54%), Gaps = 25/941 (2%)
Query: 447 RGLGTPRAVGALRKLITMERPDLVFLMETRKKAFEIQKTKMPSGLVHSIGVDCNGEGKSR 506
+G+G P L L + + D++FL+ET K I G + I G
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHS--- 426
Query: 507 GGGLACYWSSSLDVNIISLSSNHIQMEVTTTIIDSKMVVTGIYGHPEAPQKWRTWELIKK 566
GGLA W S+ ++ + HI + ++ I+ ++ +YGHP ++ W +
Sbjct: 427 -GGLALLWKDSVRLSNLYQDDRHIDVHISINNIN--FYLSRVYGHPCQSERHSLWTHFEN 483
Query: 567 LTPDPEVPWLCLGDFNEVLKSSEKTGGNPINFVGAQAFQEAMDFCGLRDMGFSGFQFTWS 626
L+ PW+ +GDFNE+L ++EK GG + + F+ + C L+D+ G +F+W
Sbjct: 484 LSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV 543
Query: 627 NMRPTPNTIQERLDRALVNECWTEHWPHTHVSHLDRFNSDHNPIYVIFLKAKRQKKKKIR 686
R + +T++ LDRA +N +P + L+ SDH P+ FL ++ + +K+R
Sbjct: 544 GERHS-HTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPL---FLSLEKTETRKMR 599
Query: 687 LYRFEEMWLQEEDCRHVIHHSWPRG----GRNITSKLGNVGANLTEWAEATFGNIQKRIK 742
+RF++ L+ + + W + +++ ++ + + + N + RI
Sbjct: 600 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRIN 659
Query: 743 S-QLGIIKRIQAAEQTEENLKKGKEAEKELENLLKLEEIKWSQRSRATWLAHGDRNTSFF 801
Q + K + + +TE + ++EL + EE W Q+SR W+ GDRNT FF
Sbjct: 660 QLQAALDKAMSSVNRTER--RTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFF 717
Query: 802 HKKASQRKDRNSIARITDDRGRAWTEEEDI----EEVLTKYFEDLFKATSPDDCEIVTNL 857
H R N + I D+ G + +++I +E TK +E + S D +
Sbjct: 718 HACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPI 777
Query: 858 VHGRITNEHKEIMEEPFTEEEVREALKKMHPTKAHGADGTPALFFQKFWSIVGYDVTAQV 917
V +I ++ + + ++ E+ A+ + KA G DG A F++ W IVG DV +V
Sbjct: 778 VTEQINDD----LTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEV 833
Query: 918 LSILNDGADATHINQTLIALIPKIKKPSMAKDYRPISL*NVIFKLVTKTIANRLKSFLQD 977
IN T I +IPKI P DYRPI+L NV++K+++K + RLK L
Sbjct: 834 KIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDA 893
Query: 978 IVEETQSAFVPGRLITDNAIIAHECFHYMRRKTRGVKGVMALKTDMSKAYDRVEWNFLKS 1037
IV ++Q+AF+PGRL+ DN +IAHE H ++ + R + MA+KTD+SKAYDRVEWNFL++
Sbjct: 894 IVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLET 953
Query: 1038 TLEQMGFTQRWTNLIMNCVSTVSFQVLLNGQPCRSFKPERGLRQGDPLSPYLFILCAEVF 1097
T+ GF++ W IM V +V++ VL+NG P + +P+RG+RQGDPLSPYLFILCA++
Sbjct: 954 TMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADIL 1013
Query: 1098 SSMIKAKVAAGVLHGIKITPRAPMISHLFFADDSILLARATKEEAMVLHDIIKGYEAFSG 1157
+ +IK +VA G + GI+I P ++HL FADDS+ ++ L D+ YE +SG
Sbjct: 1014 NHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSG 1073
Query: 1158 QRINFDKSELSTSRNVPSTRVHELEQLLGVKAVEKHGKYLGLPTIVGRSKTQVFSFVRER 1217
Q+IN KS ++ V T + L+ +LG+++ GKYLGLP GR K +F+++ ER
Sbjct: 1074 QKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIER 1133
Query: 1218 IWKKLKGWKEKALSRSGREVLIKSIAQAIPSYVMGLFLLPSTLCNQVERMINSFYWGGSA 1277
+ K+ W K LS +G+E+++KS+A ++P Y M F LP + +++E ++ +F+W +A
Sbjct: 1134 VKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNA 1193
Query: 1278 DSRKLNWIRWDTLATPKNMGGLGFRSFHSFNKALLAKQWWRLINRENSLMVQVIKARYYP 1337
R++ WI W L K GGLGFR FN ALLAKQ WR+IN NSL +++KARY+
Sbjct: 1194 KKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFR 1253
Query: 1338 KSTPLEANRGTNSSYLWKSVHAAREVIQKGSIWKVGTGEKI 1378
+ + L+A R SY W S+ A +VI+KGS + VG G+ +
Sbjct: 1254 EDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.144 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,159,053,708
Number of Sequences: 2540612
Number of extensions: 136375063
Number of successful extensions: 342536
Number of sequences better than 10.0: 1308
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 338332
Number of HSP's gapped (non-prelim): 2170
length of query: 1806
length of database: 863,360,394
effective HSP length: 143
effective length of query: 1663
effective length of database: 500,052,878
effective search space: 831587936114
effective search space used: 831587936114
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0383.5