BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0381.3
(253 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 238 2e-61
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 210 3e-53
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 197 2e-49
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 186 7e-46
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 181 1e-44
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 181 2e-44
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 181 2e-44
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 180 4e-44
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 175 1e-42
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 175 1e-42
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 174 2e-42
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 174 3e-42
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 172 8e-42
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 168 1e-40
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 167 2e-40
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 165 1e-39
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 165 1e-39
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 160 2e-38
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 160 2e-38
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 160 4e-38
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 238 bits (606), Expect = 2e-61
Identities = 116/248 (46%), Positives = 165/248 (65%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI+L QE +H++ +K +G + +K+DLEKAYDRV WDFL+ TL G IM
Sbjct: 412 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
GV P +S+LWN + SF P RGLRQGDPLSPYLFVLC+ERL I+ V + WKP+
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
++ G +SH+ FADD++LF +AS Q++++ L+ FCEASG KV+L+KS++ FS V
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ +S +GI +LGKYLG+P+L+ R+ K F ++ ++S+RL WK L+ AG
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 652 RITLTKAV 659
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 210 bits (534), Expect = 3e-53
Identities = 108/248 (43%), Positives = 157/248 (62%), Gaps = 17/248 (6%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ WDFL TL G + IM
Sbjct: 364 DNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIME 423
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
V P++S+LWN K SF P+RGLRQGDP+SPYLFVLC+ERL QI+ V +G WK +
Sbjct: 424 CVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSIS 483
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
I++ G +SH+ FADD++LF +AS Q KV+L+KS++ FS V
Sbjct: 484 ISQGGPKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVS 526
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ ++ GI +LGKYLG+P+L+ R+ K F ++ ++SSRL+ WK+ L+ AG
Sbjct: 527 RDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAG 586
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 587 RITLTKAV 594
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 197 bits (501), Expect = 2e-49
Identities = 104/248 (41%), Positives = 149/248 (59%), Gaps = 18/248 (7%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI+L QE +H++ +K +G + +K+DLEKAYDR+ W+FL+ TL G IM
Sbjct: 262 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMA 321
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
GV P +S+LWN K SF P RGLRQGDPLSPYLFVLC+ERL I+ V WKP+
Sbjct: 322 GVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPMA 381
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
++ C+AS Q+ ++ L++FCEASG V+L+KS+++FS V
Sbjct: 382 LS------------------CEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVS 423
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ +S +GI +LGKYLG+P+L+ R+ K ++ +SS L WK+ L+ A
Sbjct: 424 RDMERLISGESGIGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGWKSRSLSLAW 483
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 484 RITLTKAV 491
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 186 bits (471), Expect = 7e-46
Identities = 95/248 (38%), Positives = 146/248 (58%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++A E++H++HT+K + VA K+D+ KA+D++ W F+ A + GF + + IM
Sbjct: 4 DNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMT 63
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
+ SIL N + P+RG+RQGDP+SPYL++LC E L+ IQ + +
Sbjct: 64 CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK 123
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
+++G ISHL FA D L+FC+A+ E+ + N LK + +ASG VN KS +LF K +D
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLD 183
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
R LS + GI + G+YLG+P GR F+ + M ++ +W N LL+ AG
Sbjct: 184 FRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAG 243
Query: 246 RVCLAKSV 253
+ L KS+
Sbjct: 244 KEVLIKSI 251
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 181 bits (460), Expect = 1e-44
Identities = 105/235 (44%), Positives = 138/235 (58%), Gaps = 15/235 (6%)
Query: 21 QKKG-RGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMWGVKCPKLSILWNCS 79
+KKG +G + +K+DLEKAYDR+ WDFL TL GF V IM V P +S+LWN
Sbjct: 3 RKKGSKGWMLLKLDLEKAYDRIRWDFLSDTLVAAGFSEVWVTWIMQCVSGPDMSLLWNGE 62
Query: 80 KLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVRITKDGVGISHLFFA 139
K F P RGLRQGD LSPYLFVLCMERL I+ + WKP+ +++ G +SH+ FA
Sbjct: 63 KTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHICFA 122
Query: 140 DDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQINLSHIAGIS 199
DD++LF +AS EQ+Q+V L+ FC ASG KV+L+KS++ FSK V +S +GI
Sbjct: 123 DDLILFAEASVEQVQIVRRVLEAFCTASGQKVSLEKSKIFFSKNVSRELGKLISDESGIQ 182
Query: 200 RASDLGKYLGIPLLKG--------------RVTKAHFASLIGKMSSRLTSWKNNL 240
D GK L+K R K+ +LI K+ RL KN+L
Sbjct: 183 STCDWGKKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 237
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 181 bits (459), Expect = 2e-44
Identities = 99/249 (39%), Positives = 143/249 (56%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 910 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 969
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 970 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1029
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1030 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1089
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1090 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1149
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 1150 GKEIMLKSV 1158
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 181 bits (459), Expect = 2e-44
Identities = 99/249 (39%), Positives = 143/249 (56%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 930 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 989
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 990 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1049
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1109
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1110 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1169
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 1170 GKEIMLKSV 1178
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 180 bits (456), Expect = 4e-44
Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E++H++ ++++ + G VA+K D+ KAYDRV W+FL + GF PR V IM
Sbjct: 910 DNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIM 969
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V +L N S P RG+RQGDPLSPYLF+ C E L+ ++ +
Sbjct: 970 TCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGM 1029
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+ITKD + ISHL FADD L FC+AS + ++ + K++ EASG K+N KS ++F + +
Sbjct: 1030 KITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKI 1089
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
R+ L + GI GKYLG+P GR F ++ K+ R W N L+ A
Sbjct: 1090 PTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPA 1149
Query: 245 GRVCLAKSV 253
G+ + K++
Sbjct: 1150 GKEIVIKAI 1158
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 175 bits (443), Expect = 1e-42
Identities = 99/249 (39%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 930 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 990 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 1049
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 1109
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 1110 YGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 1169
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 1170 GKEIMLKSV 1178
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 175 bits (443), Expect = 1e-42
Identities = 99/249 (39%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 704 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 763
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 764 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 823
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 824 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 883
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 884 YGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 943
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 944 GKEIMLKSV 952
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 174 bits (442), Expect = 2e-42
Identities = 99/249 (39%), Positives = 138/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E+MH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 169 DNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S +P RG+RQGDPLSPYLF+LC + L+ I+ + G + V
Sbjct: 229 AAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGV 288
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 289 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRV 348
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L + I GKYLG+P GR K F +I ++ R SW L+ A
Sbjct: 349 YGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPA 408
Query: 245 GRVCLAKSV 253
G+ L KSV
Sbjct: 409 GKEILLKSV 417
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 174 bits (440), Expect = 3e-42
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGRG-LVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++AQE+ H + T + +AIK D+ KAYD+V W+F+ A L GF + + IM
Sbjct: 332 DNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIM 391
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
W + + +L N P+RGLRQGDPLSPYLF+LC E L I+ Q +
Sbjct: 392 WCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGI 451
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
++ +SHL FADD L FC+A+KEQ ++ LK++ SG ++N KS + F V
Sbjct: 452 KVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKV 511
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
+ + ++ I GI +G YLG+P G F+ + ++ SR+ W L++
Sbjct: 512 EDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKG 571
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 572 GKEVMIKSV 580
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 172 bits (436), Expect = 8e-42
Identities = 95/249 (38%), Positives = 140/249 (56%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLV-AIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN +LA E H+I KK A K+DL KAYDRV W FL L GF R V IM
Sbjct: 1188 DNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIM 1247
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V + S+ +N + L SFAP RGLRQG+PLSP+LF+ + L++ ++ V Q + P+
Sbjct: 1248 LCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPL 1307
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+I + GIS+L FADD LLF +A K++ ++V L + + +G +N K +LF +A
Sbjct: 1308 KICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEAS 1367
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
++ + + R + +YLG P +GR+ K F SL K++ R+ W N L+
Sbjct: 1368 PSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSG 1427
Query: 245 GRVCLAKSV 253
G+ L K+V
Sbjct: 1428 GKEILIKAV 1436
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 168 bits (426), Expect = 1e-40
Identities = 93/248 (37%), Positives = 143/248 (57%), Gaps = 1/248 (0%)
Query: 7 NIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
N++LA E+ H ++ +KKG+ G+ AIK+D+ KAYDRV WDFLR + GF + V+L+M
Sbjct: 897 NVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMK 956
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
V I N PQRGLRQGDPLSPYLF++C E L+ +Q G + ++
Sbjct: 957 CVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIK 1016
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
+ +D I+HLFFADD L+ +A + Q + L + ASG +N DKS +LFS
Sbjct: 1017 VCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTL 1076
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
++ + I++ + +YLG+P+ G+ + F + K+ R+ W+ LL++AG
Sbjct: 1077 QSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAG 1136
Query: 246 RVCLAKSV 253
+ L K+V
Sbjct: 1137 KEILVKAV 1144
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 167 bits (424), Expect = 2e-40
Identities = 94/249 (37%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E+ H + ++ G+ G A K+D+ KAYDRV W FL + GF V+LIM
Sbjct: 749 DNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIM 808
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V I N SF+P+RGLRQGDPLSPYLF+LC E + + +G +
Sbjct: 809 KCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGI 868
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI + +SHL FADD L+ C+A+ + Q + L+ + E SG +N DKS ++FS
Sbjct: 869 RICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNT 928
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
+ + + R + KYLG+P+ GR F+ L ++ R+ WK LL+RA
Sbjct: 929 SSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRA 988
Query: 245 GRVCLAKSV 253
G+ L K+V
Sbjct: 989 GKEILIKAV 997
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 165 bits (418), Expect = 1e-39
Identities = 84/252 (33%), Positives = 139/252 (54%), Gaps = 1/252 (0%)
Query: 3 ATRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVD 61
A+ DN+++ E +H + + + R +A+K ++ KAYDR+ WDF++ + + GF +
Sbjct: 371 ASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWIS 430
Query: 62 LIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTW 121
I+ + S L N S + P+RGLRQGDPLSP+LF++C E L+ + G+
Sbjct: 431 WILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSL 490
Query: 122 KPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFS 181
+R++K ++HL FADD + FC++ + + LK++ EASG +N KS + FS
Sbjct: 491 LGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFS 550
Query: 182 KAVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLL 241
+ + I GI LGKYLG+P + GR + F ++ ++ R SW + L
Sbjct: 551 RKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFL 610
Query: 242 NRAGRVCLAKSV 253
+ AG+ + KSV
Sbjct: 611 STAGKTTMLKSV 622
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 165 bits (418), Expect = 1e-39
Identities = 87/249 (34%), Positives = 132/249 (52%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGRG-LVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++AQE+ H + T +G +AIK D+ KAYDRV W+F+ L GF + + IM
Sbjct: 398 DNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIM 457
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
W + + +L N P+RGLRQGDPLSPYLF+LC E L I+ + +
Sbjct: 458 WCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGI 517
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
++ +SHL FA+D L FC+A+KEQ ++ LK++ SG +N KS + F V
Sbjct: 518 KVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKV 577
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
+ + GI +G YLG+P G F+ + ++ +R+ W L++
Sbjct: 578 GDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKG 637
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 638 GKEVMIKSV 646
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 160 bits (406), Expect = 2e-38
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E++H + + K +AIK D+ KAYDRV W FL + GF + LIM
Sbjct: 548 DNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIM 607
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK + +L N + P RGLRQGDPLSPYLFV+C E L +Q+ + +
Sbjct: 608 ECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGL 667
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
++ + ISHL FADD + +C+ + E L + ++E+ ASG +VN KS + F K +
Sbjct: 668 KVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
R+ + GI R G YLG+P A + L ++ ++ W++N L+
Sbjct: 728 SEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPG 787
Query: 245 GRVCLAKSV 253
G+ L K+V
Sbjct: 788 GKEILLKAV 796
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 160 bits (406), Expect = 2e-38
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 3 ATRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVD 61
A DN+++ E++H + K +AIK D+ KAYDR+ W+FL+ L GF + +
Sbjct: 486 AIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIR 545
Query: 62 LIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTW 121
+M V S L N S S P RGLRQGDPLSPYLF+LC E L+ + +G
Sbjct: 546 WVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVM 605
Query: 122 KPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFS 181
+R+ + ++HL FADD + FC+ + ++N LK++ ASG +NL KS + FS
Sbjct: 606 VGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFS 665
Query: 182 KAV--DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNN 239
D +R++ LS I +GKYLG+P GR + F+S++ ++ R SW
Sbjct: 666 SKTPQDIKRRVKLS--LRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIR 723
Query: 240 LLNRAGRVCLAKSV 253
L+ AG+ L K+V
Sbjct: 724 FLSSAGKQILLKAV 737
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 160 bits (404), Expect = 4e-38
Identities = 89/256 (34%), Positives = 138/256 (53%), Gaps = 4/256 (1%)
Query: 1 FLATR---DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFP 56
F+A R DNI++A EV+H + T K +G +AIK ++ KA+DRV W+++RA L GF
Sbjct: 542 FVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFH 601
Query: 57 PRIVDLIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLV 116
+ V IM+ + S+L N + P RGLRQGDPLSP+LFVLC E L +
Sbjct: 602 QKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSEGLTHLMNRAE 661
Query: 117 TQGTWKPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKS 176
QG +R +++G I HL FADD L C+A KE++ ++ + K + + +G ++N DKS
Sbjct: 662 RQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDKS 721
Query: 177 RMLFSKAVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSW 236
+ VD ++ + GI+ YLG+P + ++ +RL+ W
Sbjct: 722 SITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYIKDRLKTRLSGW 781
Query: 237 KNNLLNRAGRVCLAKS 252
L+ G+ L K+
Sbjct: 782 FARTLSMGGKETLLKA 797
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,806,322
Number of Sequences: 2540612
Number of extensions: 16455830
Number of successful extensions: 43641
Number of sequences better than 10.0: 923
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 42079
Number of HSP's gapped (non-prelim): 989
length of query: 253
length of database: 863,360,394
effective HSP length: 125
effective length of query: 128
effective length of database: 545,783,894
effective search space: 69860338432
effective search space used: 69860338432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0381.3