BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0371b.8
(310 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 117 6e-25
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 113 8e-24
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 110 4e-23
gb|AAP54205.1| putative gag-pol precursor [Oryza sativa (japonic... 99 1e-19
gb|AAP52640.1| putative gag-pol precursor [Oryza sativa (japonic... 97 6e-19
ref|XP_468685.1| putative retrotransposon gag protein [Oryza sat... 97 6e-19
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 96 1e-18
ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japon... 95 2e-18
emb|CAE05337.1| OSJNBa0079M09.7 [Oryza sativa (japonica cultivar... 95 2e-18
gb|AAP55192.1| putative gypsy-type retrotransposon gag-pol precu... 94 4e-18
gb|AAT75246.1| putative gag-pol precursor [Oryza sativa (japonic... 94 4e-18
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 94 5e-18
ref|XP_472501.1| OSJNBb0049I21.2 [Oryza sativa (japonica cultiva... 94 5e-18
emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa (japonica cultivar... 94 5e-18
ref|XP_462843.1| putative gypsy-type retrotransposon RIRE2 [Oryz... 94 7e-18
ref|XP_471691.1| OSJNBa0035B13.13 [Oryza sativa (japonica cultiv... 94 7e-18
emb|CAE03068.2| OSJNBa0089E12.6 [Oryza sativa (japonica cultivar... 94 7e-18
gb|AAV43881.1| putative polyprotein [Oryza sativa (japonica cult... 94 7e-18
gb|AAP52743.1| putative gag-pol precursor [Oryza sativa (japonic... 93 9e-18
ref|XP_475673.1| hypothetical protein [Oryza sativa (japonica cu... 93 9e-18
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 117 bits (292), Expect = 6e-25
Identities = 52/174 (29%), Positives = 96/174 (54%)
Query: 105 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 164
PF++D+ + +PD + L ++ Y G +DP +HL F T+M + V C++FP++ +
Sbjct: 211 PFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLRE 270
Query: 165 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 224
+ WF+ LP SI++F KF Q++ ++ + L N++Q+ GESL+ +M R+S
Sbjct: 271 GPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFS 330
Query: 225 AASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYILDEE 278
+ + P + +LPG L ++P +M+E+R RA+ ++ EE
Sbjct: 331 KVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEE 384
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 113 bits (282), Expect = 8e-24
Identities = 84/286 (29%), Positives = 129/286 (44%), Gaps = 12/286 (4%)
Query: 1 RPHRVVLDSPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQEQ 60
R R + RT G P PS P + S+ L + + + ++P +
Sbjct: 51 RGARRIRQQEARTRGRWIPPLSPSAPASGGMHARSEPRRLRAEAKQTFSRGERPIGSHRN 110
Query: 61 WRNLMRSIGNIQQRNEHLQAQLDFYRRE----QRD-DGSRKADSVAEFRPFSEDVESVAI 115
R + N+ + +RE RD DG+ + D + PF+ + + I
Sbjct: 111 --GTYRPFPGMDNNNQQFINMVTELKREVQALNRDRDGTAEEDEMGS--PFAPHILAPEI 166
Query: 116 PDNMKTLVLDSYSGDS---DPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTT 172
P +M+ Y+GD DP+DH+ F M I++ D C +F ST A AWF+
Sbjct: 167 PVSMRLSNPVVYTGDRNARDPRDHINQFLAVMDILSTPDHALCWIFRSTLTGRAQAWFSQ 226
Query: 173 LPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASDKVED 232
LPRGSI +F + F+ QF+ N+ P TI L + + EGESL+EYM R++ V
Sbjct: 227 LPRGSIRSFDELRELFVRQFACNRRYPKTIGHLMTMVEAEGESLREYMRRFANTVIDVRH 286
Query: 233 EEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYILDEE 278
P + G + L +PARS+EE+ RA Y+L E+
Sbjct: 287 VGPHILSEFVAQGTRSVEFANSLVGRPARSLEELMHRAERYMLQED 332
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 110 bits (276), Expect = 4e-23
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 105 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 164
PF + + P +Y G SDP DH++++ M + +DA+ C++FP++ +
Sbjct: 5 PFCSHIINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQG 64
Query: 165 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 224
A++WF LP S+ NFRD S F+ Q+ + I+ L NI+ Q+ ESL+E++ R+
Sbjct: 65 QALSWFHRLPPNSVGNFRDLSEAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRFG 124
Query: 225 AASDKVEDEEPRACALAFKNGLLPG-GLNSKLARKPARSMEEMRARASTYILDEED 279
A +VE A FK + PG LA+KP +M+++ RA+ Y + E+D
Sbjct: 125 QAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKPPTTMDDLFRRANKYSMLEDD 180
>gb|AAP54205.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37535232|ref|NP_921918.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|13489188|gb|AAK27822.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1720
Score = 99.4 bits (246), Expect = 1e-19
Identities = 67/260 (25%), Positives = 110/260 (41%), Gaps = 6/260 (2%)
Query: 19 PSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQEQWRNLMRSIGNIQQRNEHL 78
P+ PS + S G ERS + P ++ V + + R + N+H
Sbjct: 220 PANSPSLSITGTGSSRRSRGHDERSVHSPPERHRERRVERPRSPPHQRPVDLRDMINQHR 279
Query: 79 QAQLDFYRREQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLL 138
A R R +R D V F+ D+ V P K ++ Y+G ++P+ L
Sbjct: 280 AA------RGHRHSPNRYDDDVDRVATFTNDLRRVDWPVGFKPTGIEKYNGTTNPESWLT 333
Query: 139 YFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQ 198
+ + P +A +W LPR +I ++ + F+ F +
Sbjct: 334 VYGIAIRAAGGDSKAMANYLPVALADSARSWLHGLPRRTIGSWAELRDHFIANFQGTFER 393
Query: 199 PVTINDLYNIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARK 258
P T DLYNI Q+ GESL++Y+ R+S +K+ D AF G+ L K RK
Sbjct: 394 PGTQFDLYNIVQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEDLVGKFGRK 453
Query: 259 PARSMEEMRARASTYILDEE 278
P R++++M +A+ Y E+
Sbjct: 454 PPRTVKQMFEKANEYAKAED 473
>gb|AAP52640.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37532102|ref|NP_920353.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22795280|gb|AAN08252.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 792
Score = 97.1 bits (240), Expect = 6e-19
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 5/209 (2%)
Query: 70 NIQQRNEHLQAQLDFYRREQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSG 129
N +++H +A YR R D D VA F ++D+ V P K ++ Y G
Sbjct: 294 NELNQSDHRRAARGHYRSPDRHDDD--LDGVAAF---TDDLRRVDWPAGFKPTGIEKYDG 348
Query: 130 DSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFL 189
++P+ L + + + P +A +W LPRG+I ++ + F+
Sbjct: 349 TTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFI 408
Query: 190 VQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPG 249
F +P T DLYN+ Q+ GESL++Y+ R+S +K+ D AF G+
Sbjct: 409 ANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHE 468
Query: 250 GLNSKLARKPARSMEEMRARASTYILDEE 278
L K RKP R+++ M +A+ Y E+
Sbjct: 469 ELVGKFGRKPPRTVKLMFEKANEYAKAED 497
>ref|XP_468685.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)] gi|41469123|gb|AAS07074.1| putative
retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 776
Score = 97.1 bits (240), Expect = 6e-19
Identities = 71/276 (25%), Positives = 116/276 (41%), Gaps = 8/276 (2%)
Query: 10 PVRTTGVQSPSPPPSPPVP-----PPPPSPSQVGSLERSPENSPAPEQQPAVTQEQWRNL 64
PV + V++P+ P + PP S VGS RS + P + R +
Sbjct: 184 PVNSGSVRTPTGSQVPHLRSHDYHPPSLSIVGVGSSRRSRGHDERSIHSPPERHRE-RRV 242
Query: 65 MRSIGNIQQRNEHLQAQLDFYR--REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTL 122
R +QR L+ ++ R R R R D V F+ D+ V P K
Sbjct: 243 ERPRSPPRQRPVDLRDTINQRRAARGHRHSPDRYDDDVDGVAAFTNDLRQVDWPAGFKPT 302
Query: 123 VLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFR 182
++ Y G ++P+ L + + P +A +W LPRG+I ++
Sbjct: 303 GIEKYDGTTNPESWLTVYGLAIRTAGGDSKAMANYLPVALADSARSWLHGLPRGTIGSWA 362
Query: 183 DFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASDKVEDEEPRACALAF 242
+ F+ F +P T DLYN+ Q+ ESL++Y+ R+S +K+ D AF
Sbjct: 363 ELRDHFIANFQGTFERPGTQFDLYNVVQKSEESLRDYIRRFSEQRNKISDITDDVIIAAF 422
Query: 243 KNGLLPGGLNSKLARKPARSMEEMRARASTYILDEE 278
G+ L K RKP + +++M +A+ Y E+
Sbjct: 423 TKGIRHEDLVGKFGRKPPKMVKQMFEKANEYAKAED 458
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 96.3 bits (238), Expect = 1e-18
Identities = 69/294 (23%), Positives = 127/294 (42%), Gaps = 18/294 (6%)
Query: 1 RPHRVVLDSPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPE-NSPAPEQQPAVTQE 59
+PH + + P RT Q+ +P P P + + + + N+ A + V Q
Sbjct: 228 QPHILQSNIP-RTQPPQNDTPQIQVPQTQIPQIQTSLPNFTHTQSTNTQAAQNHHQVPQG 286
Query: 60 ------QWRNLMRSIGNIQQRNEHLQ-------AQLDFYRREQRDDGSRKADSVAEFRPF 106
Q +M G I Q H+Q F + +R D+ P
Sbjct: 287 FSLFHMQQPEMMFEQGYIPQMANHIQYAGQIPNQAFQFQPTQPYFQPTRAIDTK---NPL 343
Query: 107 SEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTA 166
S++++ P N K + Y GD+DP ++L + T + D K ++ P+ + A
Sbjct: 344 SQNLQMAPWPINFKLSNITKYKGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVA 403
Query: 167 MAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAA 226
++W+TT+P +I ++ F F +P +DLY ++Q GE+L+ ++ ++S
Sbjct: 404 LSWYTTIPPMTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRV 463
Query: 227 SDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYILDEEDD 280
++ + A K LLPG L LAR ++ +++ R ++ EED+
Sbjct: 464 RCQIRHVDDEMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERMESFARGEEDE 517
>ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|27764661|gb|AAO23086.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 971
Score = 95.1 bits (235), Expect = 2e-18
Identities = 57/203 (28%), Positives = 93/203 (45%)
Query: 77 HLQAQLDFYRREQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDH 136
H QA + + G+ + P S +++ IP K L + YSG++DPK+
Sbjct: 329 HAQAVISPFATPYPQQGTAGRAGGEKGLPLSGGIKNRPIPPQFKFLPVPRYSGETDPKEF 388
Query: 137 LLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANK 196
L + + + + K ++ A +W+ LP SI ++ F++ F
Sbjct: 389 LSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFRGTY 448
Query: 197 NQPVTINDLYNIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLA 256
+P T L IRQ+ GES++EYM R+S A +VED + A GLL G L K+A
Sbjct: 449 EEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVEDITEASVINAASAGLLEGELTRKIA 508
Query: 257 RKPARSMEEMRARASTYILDEED 279
K +++E + + EED
Sbjct: 509 NKEPQTLEHLVRIIDGFAKSEED 531
>emb|CAE05337.1| OSJNBa0079M09.7 [Oryza sativa (japonica cultivar-group)]
gi|50922707|ref|XP_471714.1| OSJNBa0079M09.7 [Oryza
sativa (japonica cultivar-group)]
Length = 877
Score = 95.1 bits (235), Expect = 2e-18
Identities = 51/187 (27%), Positives = 85/187 (45%)
Query: 87 REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVI 146
R R R D V F+ D+ V P K ++ Y G ++P+ L + +
Sbjct: 314 RGHRHSPDRYDDDVDRVAAFTNDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRA 373
Query: 147 IAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLY 206
P +A +W LPRG+I ++ + F+ F +P T DLY
Sbjct: 374 AGGDSKAMANYLPVALADSAWSWLHGLPRGTIGSWAELRDHFITNFQGTFERPGTQFDLY 433
Query: 207 NIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEM 266
N+ Q+ GESL++Y+ R+S +K+ D +AF G+ L K RKP +++++M
Sbjct: 434 NVIQKSGESLRDYIRRFSEQRNKISDITDDVIIVAFTKGIRHEDLVGKFGRKPPKTVKQM 493
Query: 267 RARASTY 273
+A+ Y
Sbjct: 494 FEKANEY 500
>gb|AAP55192.1| putative gypsy-type retrotransposon gag-pol precursor [Oryza sativa
(japonica cultivar-group)] gi|37537206|ref|NP_922906.1|
putative gypsy-type retrotransposon gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|12039388|gb|AAG46174.1| putative gypsy-type
retrotransposon GAG-POL precursor [Oryza sativa]
Length = 785
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/187 (27%), Positives = 85/187 (44%)
Query: 87 REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVI 146
R R +R D V F+ D+ V P K ++ Y G ++P+ L + +
Sbjct: 255 RGHRHSPNRYDDDVDGVAAFTNDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRA 314
Query: 147 IAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLY 206
P ++A +W LPRG+I ++ + F+ F +P T DLY
Sbjct: 315 AGGDSKAMANYLPVALANSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLY 374
Query: 207 NIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEM 266
N+ Q+ GESL++Y+ R+S +K+ D AF G+ L K RKP R++++M
Sbjct: 375 NVVQKSGESLRDYIRRFSEQRNKISDITDDIIIAAFTKGIRHEDLVGKFGRKPPRTVKQM 434
Query: 267 RARASTY 273
+A Y
Sbjct: 435 FEKAHEY 441
>gb|AAT75246.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1512
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/192 (27%), Positives = 87/192 (45%)
Query: 87 REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVI 146
R R +R D V F+ D+ V P + K ++ Y G ++P+ L + +
Sbjct: 353 RGHRHSPNRYDDDVDGVAAFTNDLRRVDWPASFKPTGIEKYDGTTNPESWLTVYGLAIRA 412
Query: 147 IAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLY 206
P +A +W LPRG+I ++ + F+ F +P T DLY
Sbjct: 413 AGGDSKAMANYLPVALADSAQSWLNGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLY 472
Query: 207 NIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEM 266
N+ Q+ GESL++Y+ R+S +K+ D AF G+ L K KP R++++M
Sbjct: 473 NVVQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEDLVGKFGCKPPRTVKQM 532
Query: 267 RARASTYILDEE 278
+A+ Y E+
Sbjct: 533 FEKANEYAKAED 544
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza
sativa (japonica cultivar-group)]
Length = 2008
Score = 94.0 bits (232), Expect = 5e-18
Identities = 51/185 (27%), Positives = 86/185 (45%)
Query: 94 SRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAV 153
+R D + E F++D+ V P K ++ Y G ++P L + + +
Sbjct: 409 NRHDDDLDEVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPGSWLTVYGLAIRAAGGDNKA 468
Query: 154 KCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEG 213
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ G
Sbjct: 469 MANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSG 528
Query: 214 ESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTY 273
ESL++Y+ R+S +K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 529 ESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY 588
Query: 274 ILDEE 278
E+
Sbjct: 589 AKAED 593
>ref|XP_472501.1| OSJNBb0049I21.2 [Oryza sativa (japonica cultivar-group)]
gi|38346966|emb|CAE02263.2| OSJNBb0049I21.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1843
Score = 94.0 bits (232), Expect = 5e-18
Identities = 51/184 (27%), Positives = 85/184 (45%)
Query: 95 RKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 154
R D + F++D+ V P K ++ Y G ++P+ L + +
Sbjct: 416 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAM 475
Query: 155 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 214
P +A +W LPRG+I ++ + +F+ F +P T DLYN+ Q+ GE
Sbjct: 476 ANYLPVALADSARSWLHGLPRGTIGSWAELRDRFIANFQGTFERPGTQYDLYNVIQKSGE 535
Query: 215 SLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYI 274
SL+EY+ R+S +K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 536 SLREYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA 595
Query: 275 LDEE 278
E+
Sbjct: 596 KAED 599
>emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa (japonica cultivar-group)]
gi|50922823|ref|XP_471772.1| OSJNBb0054B09.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1992
Score = 94.0 bits (232), Expect = 5e-18
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 95 RKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 154
R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 409 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAVGGDSKAM 468
Query: 155 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 214
P + +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 469 ANYLPVALEDSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 528
Query: 215 SLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYI 274
SL++Y+ R+S +K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 529 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA 588
Query: 275 LDEE 278
E+
Sbjct: 589 KAED 592
>ref|XP_462843.1| putative gypsy-type retrotransposon RIRE2 [Oryza sativa (japonica
cultivar-group)] gi|11967913|dbj|BAB19768.1| putative
gypsy-type retrotransposon RIRE2 [Oryza sativa (japonica
cultivar-group)]
Length = 983
Score = 93.6 bits (231), Expect = 7e-18
Identities = 51/192 (26%), Positives = 87/192 (44%)
Query: 87 REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVI 146
R R +R D + F+ D+ V P K ++ Y G ++P+ L + +
Sbjct: 406 RGHRHSPNRYDDDMDGVAAFTNDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIHA 465
Query: 147 IAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLY 206
P +A +W LPRG+I ++ + F+ F +P T DLY
Sbjct: 466 AGGDSKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLY 525
Query: 207 NIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEM 266
N+ Q+ GESL++Y+ R+S +K+ D AF G+ L K RKP +++++M
Sbjct: 526 NVVQKSGESLRDYIRRFSKQRNKISDITDDVIIAAFTKGIRHEDLVGKFGRKPPKTVKQM 585
Query: 267 RARASTYILDEE 278
+A+ Y E+
Sbjct: 586 FEKANEYAKAED 597
>ref|XP_471691.1| OSJNBa0035B13.13 [Oryza sativa (japonica cultivar-group)]
gi|38344319|emb|CAD40440.2| OSJNBa0035B13.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1736
Score = 93.6 bits (231), Expect = 7e-18
Identities = 50/184 (27%), Positives = 87/184 (47%)
Query: 95 RKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 154
R+ D++ F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 315 RRDDNLDGVAAFTDDLRRVDWPAGFKPTRIEKYDGTTNPESWLTVYGLAIRAAGGDNKAM 374
Query: 155 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 214
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 375 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 434
Query: 215 SLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYI 274
SL++Y+ R+S +K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 435 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA 494
Query: 275 LDEE 278
E+
Sbjct: 495 KAED 498
>emb|CAE03068.2| OSJNBa0089E12.6 [Oryza sativa (japonica cultivar-group)]
Length = 1939
Score = 93.6 bits (231), Expect = 7e-18
Identities = 52/192 (27%), Positives = 88/192 (45%)
Query: 87 REQRDDGSRKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVI 146
R + R D + F++D+ V P + K ++ Y G ++P+ L + +
Sbjct: 407 RGRHHSPDRYDDDLDGVAAFTDDLRRVDWPASFKPTGIEKYDGTTNPESWLTVYGLAIRA 466
Query: 147 IAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLY 206
+ P +A +W LPRG+I ++ + F+ F +P T DLY
Sbjct: 467 AGGDNKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLY 526
Query: 207 NIRQQEGESLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEM 266
N+ Q+ GESL+EY+ R+S +K+ D AF G+ L K RKP R+++ M
Sbjct: 527 NVIQKSGESLREYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLM 586
Query: 267 RARASTYILDEE 278
+A+ Y E+
Sbjct: 587 FEKANEYAKAED 598
>gb|AAV43881.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1551
Score = 93.6 bits (231), Expect = 7e-18
Identities = 51/184 (27%), Positives = 84/184 (44%)
Query: 95 RKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 154
R D V F+ D+ V P K ++ Y G ++P+ L + +
Sbjct: 396 RYDDDVDGVAAFTSDLRRVDWPAGFKPTGIEKYEGTTNPESWLTAYGLAIRAAGGDSKAM 455
Query: 155 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 214
P +A +W LPRG+I ++ + F+ F +P T DLYNI Q+ GE
Sbjct: 456 ANYLPVALADSAQSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNIIQKSGE 515
Query: 215 SLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYI 274
SL++Y+ R+S +K+ D AF G+ L K RKP +++++M +A+ Y
Sbjct: 516 SLRDYIRRFSEQRNKISDITDNVIIAAFTKGIRHEDLVGKFGRKPPKTVKQMFEKANEYA 575
Query: 275 LDEE 278
E+
Sbjct: 576 KAED 579
>gb|AAP52743.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37532308|ref|NP_920456.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|20270061|gb|AAM18149.1| Putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|18958679|gb|AAL82662.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1964
Score = 93.2 bits (230), Expect = 9e-18
Identities = 51/184 (27%), Positives = 85/184 (45%)
Query: 95 RKADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 154
R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 410 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAM 469
Query: 155 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 214
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 470 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 529
Query: 215 SLKEYMARYSAASDKVEDEEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYI 274
SL+EY+ R+S +K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 530 SLREYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA 589
Query: 275 LDEE 278
E+
Sbjct: 590 KAED 593
>ref|XP_475673.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48475198|gb|AAT44267.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1315
Score = 93.2 bits (230), Expect = 9e-18
Identities = 77/286 (26%), Positives = 123/286 (42%), Gaps = 26/286 (9%)
Query: 10 PVRTTGVQSPSPPPSPPVPPPP---PSPSQVGS--LERSPENSPAPEQQPAVTQEQWRNL 64
PV + V++P+ PP+ PS S VG+ RS ++ P + R
Sbjct: 153 PVNSASVRTPTGSRVPPLQSQDYHQPSLSVVGAGTSRRSRDHDEQSVHSPPDRHRERRAE 212
Query: 65 MRSIGNIQQRNEHLQAQLDF-----YRREQRD-----DGSRKADSVAEFRPFSEDVESVA 114
R+ H + +D RR R R D V F+ D+ V
Sbjct: 213 C-------PRSPHRRRPIDLRETINQRRAARGYIPHHSPDRYDDDVDGVAAFTSDLRRVD 265
Query: 115 IPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKC--RMFPSTFKSTAMAWFTT 172
P K ++ Y G ++P+ L ++ + I AA +K P +A +W
Sbjct: 266 WPAGFKPTGIEKYDGTTNPETWLTVYS--LAIRAAGGDIKAMANYLPVALADSARSWLHG 323
Query: 173 LPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASDKVED 232
LPRG+I ++ + F+ F +P T DLYNI Q+ GESL++Y+ R+S +K+ D
Sbjct: 324 LPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNIVQKSGESLRDYIRRFSEQRNKISD 383
Query: 233 EEPRACALAFKNGLLPGGLNSKLARKPARSMEEMRARASTYILDEE 278
AF G+ L K RKP R++++M +A+ Y E+
Sbjct: 384 ITDDVIIAAFTKGIHHDLLVGKFGRKPPRTVKQMFEKANEYAKAED 429
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,516,701
Number of Sequences: 2540612
Number of extensions: 26323089
Number of successful extensions: 468008
Number of sequences better than 10.0: 5141
Number of HSP's better than 10.0 without gapping: 2764
Number of HSP's successfully gapped in prelim test: 2606
Number of HSP's that attempted gapping in prelim test: 355855
Number of HSP's gapped (non-prelim): 44726
length of query: 310
length of database: 863,360,394
effective HSP length: 127
effective length of query: 183
effective length of database: 540,702,670
effective search space: 98948588610
effective search space used: 98948588610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0371b.8