BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0368c.9
(764 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 423 e-116
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 320 1e-85
gb|AAL76007.1| prpol [Zea mays] 312 2e-83
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 308 4e-82
emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar... 301 7e-80
gb|AAL66756.1| putative prpol [Zea mays] 294 8e-78
gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cult... 287 1e-75
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar... 286 1e-75
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 284 9e-75
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 283 2e-74
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (j... 282 3e-74
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 282 3e-74
gb|AAP52932.1| putative retroelement [Oryza sativa (japonica cul... 269 3e-70
gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonic... 267 1e-69
ref|XP_474681.1| OSJNBa0027O01.10 [Oryza sativa (japonica cultiv... 266 2e-69
gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cult... 266 2e-69
gb|AAP53982.1| putative gag-pol precursor [Oryza sativa (japonic... 265 3e-69
gb|AAU44282.1| putative polyprotein [Oryza sativa (japonica cult... 265 4e-69
gb|AAX95884.1| retrotransposon protein, putative, unclassified [... 265 4e-69
ref|NP_917378.1| P0445H04.33 [Oryza sativa (japonica cultivar-gr... 265 5e-69
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 423 bits (1087), Expect = e-116
Identities = 221/510 (43%), Positives = 321/510 (62%), Gaps = 21/510 (4%)
Query: 18 PKEVGAIAGGFGGGGVTSAARKRYVRAVNAVTEVPFGFLH--PDITISSADFFGVEQHLY 75
P+E+ IAGGF GGG +++ARK+++RA+ +V P P IT + DF ++
Sbjct: 578 PQEINYIAGGFAGGGCSNSARKKHLRAIQSVHSTPTQRRPHIPPITFTDEDFTAIDPSQD 637
Query: 76 DPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWV 135
DP+V+ + I++F + +VL+DQGSS DI+Y + F ++ + E ++ PY +VGF+ E+V
Sbjct: 638 DPMVITVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDT 697
Query: 136 RGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLA 195
+G +DL TTF + K + +RYL++ A SYNI++GR ++NRL A++ST H A+K+
Sbjct: 698 KGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSV 757
Query: 196 SGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNR---- 251
+G I + +DQK AR+CY ++ + T + + R GR +R
Sbjct: 758 NGDIATVHIDQKTARECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLV 817
Query: 252 ---------PTPIEETKE------LKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWS 296
P E E L+ D+ +GT L + + K L +N DLFAW+
Sbjct: 818 ALVDLDPRLDDPRMEAGEDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWT 877
Query: 297 HKDMSGIDPNFICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPT 356
DM G+ + I HRL++ + + Q +R++G+E+ K ++E +KL+ A FI + Y T
Sbjct: 878 AADMPGVKSDVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTT 937
Query: 357 WLANVVMVKKANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGY 416
WLANVVMVKK NGK MCVDYTDLNKACPKDSYPLP+ID+LVDGA+ +++LS +DAYSGY
Sbjct: 938 WLANVVMVKKTNGKWRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGY 997
Query: 417 HQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGD 476
+QI+M+ D++KTAF T N+ Y+ MPFGLKN GATYQRLMD VF D +GRN+EVYV D
Sbjct: 998 NQIQMYHRDREKTAFRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDD 1057
Query: 477 MIVKSVLEANHHEELLEAFGRLRKHNMRLN 506
++VKS H +L E F LR++ MRLN
Sbjct: 1058 IVVKSDSCEQHVSDLKEVFQALRQYRMRLN 1087
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 320 bits (820), Expect = 1e-85
Identities = 197/502 (39%), Positives = 290/502 (57%), Gaps = 29/502 (5%)
Query: 17 MPKEV-GAIAGGFGGGGVTSAARKRYVRAVNAV----TEVPFGFLHPDITISSADFFGVE 71
+PK V AI GG G + RK YVR VN V P + I+ D G+
Sbjct: 710 VPKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAEGIL 769
Query: 72 QHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGE 131
DP+VV + I Q VQRVL+D GSSAD+++ DAF ++ + E LT L GF G+
Sbjct: 770 FPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQ 829
Query: 132 QVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVK 191
QV G + L F + N++ ++ + V+ YN I+GR+T+N A+I + +K
Sbjct: 830 QVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMK 889
Query: 192 YLLASGRIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEG-R 248
G G I+V +Q ARK Y + + H V+ +GE +
Sbjct: 890 L---PGLRGVITVRGEQLAARK--------YELQGTPSVKGVHVVD------QKQGEYIK 932
Query: 249 VNRPTPIEETKELKFGD----KVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGID 304
+ +P P +TK+++ + K + IG L + E+ + K+++EN+ +FAWS ++ G+D
Sbjct: 933 IQKPIPEGKTKKVQLDEHNPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVD 992
Query: 305 PNFICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMV 364
+ I H LA+ G K Q RRM ++++ + E+ KLL A+ I E+ +P WLAN V+V
Sbjct: 993 RSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLV 1052
Query: 365 KKANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSS 424
KKANGK MC+D+TDLNKACPKD +PLP ID+LVD + EL+S +DAYSGYHQ+ M
Sbjct: 1053 KKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKE 1112
Query: 425 DKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLE 484
D++KT+F+T Y + MPFGLKN GAT+ RL+ +V A Q+GRN+E Y+ D++VKS
Sbjct: 1113 DEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQA 1172
Query: 485 ANHHEELLEAFGRLRKHNMRLN 506
H ++L E F LRK +++LN
Sbjct: 1173 FTHGKDLQETFENLRKCSVKLN 1194
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 312 bits (800), Expect = 2e-83
Identities = 191/500 (38%), Positives = 272/500 (54%), Gaps = 12/500 (2%)
Query: 11 RSGKNSMPKEVGAIAGGFGGGGVTSAARKRYVRAVNAV-TEVPF---GFLHPDITISSAD 66
++G S PK V I GG +K R V V + PF + H IT S D
Sbjct: 7 QAGAASDPKLVLPITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQED 66
Query: 67 FFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLV 126
+ D +V+ I F V VL+D GS+ADII+ AF Q+ E + T L
Sbjct: 67 LQLKDYPHNDAMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLC 126
Query: 127 GFAGEQVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTA 186
GF G Q+ G + + TF N + +V + ++ YN IIGR TLN A++ A
Sbjct: 127 GFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPA 186
Query: 187 HTAVKYLLASGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGE 246
+ +K G I I Q+ AR+ N D + C + E S
Sbjct: 187 YLCMKIPSDQGPIA-IHGSQEAARRAEGNWTDSKAIHNIDGAEACEQYKFRREKAAS--- 242
Query: 247 GRVNRPTPIEETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPN 306
++P P+ +++ ++ + +G++L+E QE+ L + L N D+FAWS D+ G++ +
Sbjct: 243 --ADQPKPMLLCEDI--AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRD 298
Query: 307 FICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKK 366
I H L +DP + Q R+M D+K + + EV +LL+A I E+KYP WLAN VMVKK
Sbjct: 299 VIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKK 358
Query: 367 ANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDK 426
ANGK MC+D+TDLNKACPKD +PLP ID LVD A+++EL+SL+D YSGYHQI M D+
Sbjct: 359 ANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDE 418
Query: 427 DKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEAN 486
KT+F+T Y Y MP GLKN G ++ R+ +V Q+GRN+ YV D+IVKS + N
Sbjct: 419 PKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQEN 478
Query: 487 HHEELLEAFGRLRKHNMRLN 506
H +L E F R+ ++LN
Sbjct: 479 HIADLQETFASFRQAGLKLN 498
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 308 bits (789), Expect = 4e-82
Identities = 190/500 (38%), Positives = 270/500 (54%), Gaps = 12/500 (2%)
Query: 11 RSGKNSMPKEVGAIAGGFGGGGVTSAARKRYVRAVNAV-TEVPF---GFLHPDITISSAD 66
++G S PK V I GG +K R V V + PF + H IT S D
Sbjct: 7 QAGAASDPKLVLPITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQED 66
Query: 67 FFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLV 126
+ D +V+ I F V VL+D GS+ADII+ AF Q+ E + T L
Sbjct: 67 LQLKDYPHNDAMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLC 126
Query: 127 GFAGEQVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTA 186
GF G Q+ G + + TF N + +V + ++ YN IIGR TLN A++ A
Sbjct: 127 GFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPA 186
Query: 187 HTAVKYLLASGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGE 246
+ +K G I I Q+ AR+ N D + C E S
Sbjct: 187 YLCMKMPSDQGPIA-IHGSQEAARRAEGNWTDSKAIHNIDGAEACEXYKFRREKAAS--- 242
Query: 247 GRVNRPTPIEETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPN 306
++P P+ +++ ++ + +G++L+E QE+ L + L N D+FAWS D+ G++ +
Sbjct: 243 --ADQPKPMLLCEDI--AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRD 298
Query: 307 FICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKK 366
I H L +DP + Q R+M D+K + + EV +LL+A I E+KYP WLAN VMVKK
Sbjct: 299 VIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKK 358
Query: 367 ANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDK 426
ANGK MC+D+TDLNKACPKD +PLP ID LVD +++EL+SL+D YSGYHQI M D+
Sbjct: 359 ANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDE 418
Query: 427 DKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEAN 486
KT+F+T Y Y MP GLKN G ++ R+ +V Q+GRN+ YV D+IVKS + N
Sbjct: 419 PKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQEN 478
Query: 487 HHEELLEAFGRLRKHNMRLN 506
H +L E F R+ ++LN
Sbjct: 479 HIADLQETFASFRQAGLKLN 498
>emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar-group)]
gi|50922621|ref|XP_471671.1| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
gi|38343986|emb|CAD40452.2| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2074
Score = 301 bits (770), Expect = 7e-80
Identities = 183/481 (38%), Positives = 272/481 (56%), Gaps = 23/481 (4%)
Query: 34 TSAARKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQ 90
T RK +R V+++T G +++ I+ D GV DP+V+ I F V+
Sbjct: 1421 TQRRRKMQIRMVHSITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAEIAGFEVR 1480
Query: 91 RVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCEREN 150
R+L+D GSSAD+IY +A+ ++GL + LTP SL GF+GE V V G L F EN
Sbjct: 1481 RILVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSGEAVQVLGQALLLIAFGSGEN 1540
Query: 151 IKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIAR 210
+ ++ + V+ +YN I GR TLN+L A+ + +K +G I + A
Sbjct: 1541 RREEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGLQPSAAS 1600
Query: 211 KCYCNAIDRYGRKSALTGHRCHEVNV-PEENLDSRGEGRVNRPTPIEETKELKFGD---- 265
KC I+R H V P E +PTP + +++ D
Sbjct: 1601 KCDLAIINR----------AVHNVKTEPHER-----PKHTPKPTPHGKVTKVQINDADPT 1645
Query: 266 KVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTR 325
K++ +G + E + + + ++L++N+D+FAWS ++ G+ + I H LA+ P IK Q
Sbjct: 1646 KLVSLGGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKL 1705
Query: 326 RRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACP 385
R+M ++++ + EV KLL A I EI +P WLAN V+V+K+NGK MCVD+TDLNKACP
Sbjct: 1706 RKMSADRQEATKTEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACP 1765
Query: 386 KDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPF 445
K +PLP ID+LVD + EL+S +DAYSGYHQI M+ D KT+F+T + + MPF
Sbjct: 1766 KHDFPLPRIDQLVDLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPF 1825
Query: 446 GLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRL 505
GL+N GAT+ RL+ +V Q+GRN+E YV D++VKS +H +L E F L ++L
Sbjct: 1826 GLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDNLCVAGIKL 1885
Query: 506 N 506
N
Sbjct: 1886 N 1886
>gb|AAL66756.1| putative prpol [Zea mays]
Length = 969
Score = 294 bits (752), Expect = 8e-78
Identities = 180/460 (39%), Positives = 252/460 (54%), Gaps = 11/460 (2%)
Query: 50 EVPF---GFLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGD 106
+VPF + H IT S D + D +V+ I F V VL+D GS+ADII
Sbjct: 241 QVPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVISCIIKGFLVHNVLVDTGSAADIIVAK 300
Query: 107 AFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGS 166
AF Q+ E + T L GF G Q+ + + TF N + +V + ++
Sbjct: 301 AFRQMQEPEDKIHDSTHPLCGFGGRQIVALDKIMMPVTFGFVNNTRTEQVVFDIVDMEYP 360
Query: 167 YNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIARKCYCNAIDRYGRKSAL 226
YN IIG TLN A++ A+ +K G I I Q+ ARK N D +
Sbjct: 361 YNAIIGHGTLNAFEAILHPAYLYMKIPSDQGPIA-IHGSQEAARKAEGNWTDSKAIHNID 419
Query: 227 TGHRCHEVNVPEENLDSRGEGRVNRPTPIEETKELKFGDKVLKIGTRLTESQEQRLSKLL 286
C + E S + ++ E+ E K + +G++LTE QE+ L++ L
Sbjct: 420 GAEACEQYKYRREKAASTDQPKLM--LLCEDIAEQK-----VLLGSQLTEEQEKTLTRFL 472
Query: 287 EENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAA 346
N D+FAWS D+ G++ + H L +DP + Q R+M D+K K + EV +LL+A
Sbjct: 473 FNNKDVFAWSANDLCGVNRDVNEHSLNVDPSFRPRKQRLRKMSDDKAKGARNEVKRLLSA 532
Query: 347 EFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNEL 406
I E+KYP WLAN VMVKKANGK MC+D+TDLNKACPKD +PL ID LVD A+++EL
Sbjct: 533 GVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLSRIDSLVDAAASSEL 592
Query: 407 LSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQV 466
+SL+D YSGYHQI M D+ KT+F+T Y Y MP GLKN G ++ R+ +V Q+
Sbjct: 593 MSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLHSQI 652
Query: 467 GRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRLN 506
GRN+ YV D+IVKS+ + NH +L E F R+ ++LN
Sbjct: 653 GRNVLTYVDDIIVKSMKQENHIADLQETFANFRQAVLKLN 692
>gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533484|ref|NP_921044.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18057150|gb|AAL58173.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1931
Score = 287 bits (734), Expect = 1e-75
Identities = 171/465 (36%), Positives = 262/465 (55%), Gaps = 10/465 (2%)
Query: 55 FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLD 114
+L+ I+ D GV DP+V+ I F V+R+L+D GSSAD+I+ +A+ +GL
Sbjct: 767 YLNQLISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYATMGLP 826
Query: 115 ERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRN 174
+ LTP SL GF GE V V G L F EN + ++ + V+ +YN I GR
Sbjct: 827 TQSLTPAPTSLHGFGGEAVQVLGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRA 886
Query: 175 TLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEV 234
TLN+ A+ + +K + I + A K I+R A+
Sbjct: 887 TLNKFEAICHHNYLKLKMPGPTWVIVVKGLQPSAASKGDLAIINR-----AVYSVETEPH 941
Query: 235 NVPEENLDSRGEGRVNRPTPIEETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFA 294
P+ G++ + I++ + K++ +G + E + + + ++L++N+D+FA
Sbjct: 942 ERPKHMPKPTRHGKITK-MQIDDADPI----KLVSLGGDMGEEEVESILEVLKKNIDIFA 996
Query: 295 WSHKDMSGIDPNFICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKY 354
WS ++ G+ + I H LA+ P IK Q R+M ++++ + E+ KLL A I EI +
Sbjct: 997 WSPNEVGGVPTDLIMHHLAVKPDIKPRKQKLRKMSADRQEAAKAEIQKLLRAGVIQEIDH 1056
Query: 355 PTWLANVVMVKKANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYS 414
P WLAN V+V+K+NGK MCVD+TDLNKACPKD +PLP ID+LVD + EL+S +DAYS
Sbjct: 1057 PEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLDAYS 1116
Query: 415 GYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYV 474
GYHQI M+ D KT+F+T + + MPFGL+N GAT+ RL+ +V Q+GRNME Y+
Sbjct: 1117 GYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFARLVYKVLGKQLGRNMEAYI 1176
Query: 475 GDMIVKSVLEANHHEELLEAFGRLRKHNMRLNLKSSLLVYKEESL 519
D++VKS +H +L + F LR +RLN + + + + L
Sbjct: 1177 DDIVVKSRKAFDHAIDLQKTFDSLRTAGIRLNPEKCVFGVRADKL 1221
>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar-group)]
gi|50923259|ref|XP_471990.1| OSJNBb0085H11.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1605
Score = 286 bits (733), Expect = 1e-75
Identities = 180/477 (37%), Positives = 266/477 (55%), Gaps = 23/477 (4%)
Query: 38 RKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQRVLL 94
+K +R V+ +T G +L+ I+ S D GV DP+V+ F V+R+L+
Sbjct: 456 KKMRIRTVHNITSAGKGTPQYLNQLISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILV 515
Query: 95 DQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERENIKML 154
+GSSAD+I+ +A+ ++GL + LTP SL GF GE V V G L EN +
Sbjct: 516 GRGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVQVLGQALLLIALGSGENRREE 575
Query: 155 KVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIARKCYC 214
+V + V+ +YN I GR TLN+ A+ + +K +G I + A K
Sbjct: 576 QVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGLTGVIVVKGLQPSAASKGDL 635
Query: 215 NAIDRYGRKSALTGHRCHEV-NVPEENLDSRGEGRVNRPTPIEETKELKFGD----KVLK 269
I+R EV NV E D +PTP + +++ D K++
Sbjct: 636 AIINR-------------EVHNVEAEPYDR--PKHAPKPTPHSKIIKVQIDDANPTKLVS 680
Query: 270 IGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTRRRMG 329
+G + E + + ++L++N+D+FAWS ++ G+ + I H LA+ K Q R+M
Sbjct: 681 LGDDMGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMS 740
Query: 330 DEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACPKDSY 389
++++ ++ EV KLL A I EI +P WLAN V+V+K+ K MCVD+TDLNKACPKD +
Sbjct: 741 ADRQEAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCVDFTDLNKACPKDDF 800
Query: 390 PLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKN 449
PLP ID+LVD + EL+S +DAYSGYHQI M+ D KTAF+T + + MPFGL+N
Sbjct: 801 PLPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMPFGLRN 860
Query: 450 TGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRLN 506
TGAT+ RL+ +V Q+GRN+E YV D++VKS +H L E F LR ++LN
Sbjct: 861 TGATFARLVYKVLCKQLGRNVEAYVDDIVVKSRKAFDHVSNLQETFDNLRAAGIKLN 917
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 284 bits (726), Expect = 9e-75
Identities = 178/476 (37%), Positives = 265/476 (55%), Gaps = 21/476 (4%)
Query: 38 RKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQRVLL 94
+K +R V+++T G +L+ I D GV DP+V+ I F V+R+L+
Sbjct: 493 KKMQIRMVHSITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILV 552
Query: 95 DQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERENIKML 154
D GSSAD+I+ +A+ ++GL + LTP SL GF GE V V G L F EN +
Sbjct: 553 DGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGENRREE 612
Query: 155 KVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIARKCYC 214
+V + V+ +YN I GR TLN + + +K +G I + A K
Sbjct: 613 QVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMPGPTGVIVVKGLQPSAASKGDL 672
Query: 215 NAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPIEETKELKFGD----KVLKI 270
I+R H V V L R + +PTP + +++ D K++ +
Sbjct: 673 AIINR----------AVHNVEV---KLHDRPK-HAPKPTPHGKIIKVQIDDAVPTKLVSL 718
Query: 271 GTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTRRRMGD 330
G + + + + + K+ ++N+D+FAWS ++ G+ I H LA+ P K Q R+M
Sbjct: 719 GGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMSA 778
Query: 331 EKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACPKDSYP 390
++++ + EV KLL A I EI +P WLAN V+V+K+NGK MCVD+TDLNKACPKD +P
Sbjct: 779 DRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNKACPKDDFP 838
Query: 391 LPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNT 450
LP ID+LVD + EL+S ++AYSGYHQI M+ D KT+F+T + + MPFGL+N
Sbjct: 839 LPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLRMPFGLRNA 898
Query: 451 GATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRLN 506
GAT+ RL+ +V Q+GRN+E YV D++VK +H +L E F LR ++LN
Sbjct: 899 GATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAGIKLN 954
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1587
Score = 283 bits (723), Expect = 2e-74
Identities = 179/472 (37%), Positives = 263/472 (54%), Gaps = 30/472 (6%)
Query: 38 RKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNVQRVLL 94
+K R V+++T + G +L+ I+ D GV DP+V+ I F V+R+L+
Sbjct: 558 KKMQTRMVHSITSMGEGAPQYLNQLISFGPEDAEGVMFSHQDPLVISAEIAGFEVRRILV 617
Query: 95 DQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERENIKML 154
D GSSAD+I+ +A+ ++ L + LTP SL GF GE V V G L F EN +
Sbjct: 618 DGGSSADVIFAEAYAKMELPTQTLTPAPASLRGFGGEAVQVLGQALLLIAFGSGENGREE 677
Query: 155 KVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIARKCYC 214
++ + V+ +YN I GR TLN+ AV + +K +G I + A K
Sbjct: 678 QILFDVVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVIVVKGLQSSAASKSDL 737
Query: 215 NAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPIEETKELKFGDKVLKIGTRL 274
I+R V+ E L R + +PTP K+ K+ ++
Sbjct: 738 AIINR-------------AVHSVETELHERPKN-TPKPTP---------HGKITKV--QI 772
Query: 275 TESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTRRRMGDEKEK 334
++ +L +L++N+D+FAWS ++ G+ + I H LA+ P IK Q R+M ++++
Sbjct: 773 DDADPTKL--VLKKNIDIFAWSPDEVGGVPADLIMHDLAVKPDIKPRKQKLRKMSADRQE 830
Query: 335 VIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACPKDSYPLPSI 394
+ EV KLL A I EI +P WLAN V+V+K+NGK MCVD+TDLNKACPKD + LP I
Sbjct: 831 AAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFSLPRI 890
Query: 395 DKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATY 454
D+LVD + EL+S DAYSGYHQI M+ D KT+F+T + + MPFGL+N GAT+
Sbjct: 891 DQLVDSTAGCELMSFQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATF 950
Query: 455 QRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRLN 506
RL+ +V Q+GRN+E YV D++VKS +H +L E F LR ++LN
Sbjct: 951 ARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGIKLN 1002
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1168
Score = 282 bits (722), Expect = 3e-74
Identities = 170/449 (37%), Positives = 253/449 (55%), Gaps = 25/449 (5%)
Query: 66 DFFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSL 125
D GV DP+V+ I F V+R+L+D GSS D+I+ +A+ ++GL + LTP SL
Sbjct: 359 DAEGVTFPHQDPLVISAEIAGFEVRRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSL 418
Query: 126 VGFAGEQVWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVIST 185
GF GE V V G L F EN + +V + V+ +YN I GR TLN+ +
Sbjct: 419 RGFGGEAVQVLGQAQLIVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEVI--- 475
Query: 186 AHTAVKYLLASGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRG 245
+H L SG G I + SA + +N N+++
Sbjct: 476 SHHNYLKLKMSGPAGVIVIKGL--------------HPSAASKGDLAIINKAVHNVEAEP 521
Query: 246 EGR---VNRPTPIEETKELKFGD----KVLKIGTR-LTESQEQRLSKLLEENLDLFAWSH 297
R V +P P + +++ D K++ +G + E + + + ++L++N+D+FAW
Sbjct: 522 HDRAKHVPKPAPHGKIIKMQIDDADPIKLVSLGGGDMGEEEAKNILEVLKKNIDIFAWGP 581
Query: 298 KDMSGIDPNFICHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTW 357
++ G+ + I H LA+ P K Q +M ++++ + EV KLL A I EI +P W
Sbjct: 582 DEVGGVSADLIMHHLAVKPDAKPRKQKLCKMSADRQEAAKAEVQKLLKAGVIQEIDHPEW 641
Query: 358 LANVVMVKKANGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYH 417
LAN V+V+K+NGK MCVD+TDLNKACPKD +PLP ID+LVD + EL+S +DAYSGYH
Sbjct: 642 LANSVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDRLVDSTAGCELMSFLDAYSGYH 701
Query: 418 QIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDM 477
QI+M+ +D KTAF+T + + MPFGL+N GAT+ RL+ +V Q+G+N+E YV D+
Sbjct: 702 QIRMNPADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGQNVEAYVDDI 761
Query: 478 IVKSVLEANHHEELLEAFGRLRKHNMRLN 506
+VKS +H +L E F L M+LN
Sbjct: 762 VVKSRKAFDHASDLQETFDNLHAAGMKLN 790
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 282 bits (721), Expect = 3e-74
Identities = 180/498 (36%), Positives = 256/498 (51%), Gaps = 29/498 (5%)
Query: 24 IAGGFGGGGVTSAARKRYVRAVNAV-----------TEVPFGFLHPDITISSADFFGVEQ 72
IAGG T +K ++R VN V + P F D+ + S
Sbjct: 580 IAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDWSRTPITFTEEDLRLESYPHT---- 635
Query: 73 HLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQ 132
D +V+ + + V R+L+D GSSADII+ FDQ+ L L P L+GF G+Q
Sbjct: 636 ---DALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGKQ 692
Query: 133 VWVRGILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKY 192
+ G + L +F EN + V + V+ YN I GR LN+ A + +K
Sbjct: 693 IHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKI 752
Query: 193 LLASGRIGRISVDQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRP 252
G I + QK AR AI + R HE + P + G+ N
Sbjct: 753 PALHGVI-TVHGSQKEARNIE-KAIYKSFRNINSVDSTQHEASQPPD----MPRGKTNLA 806
Query: 253 TPIEETKELKFG----DKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFI 308
EETK + DK + I L+ +E L +L++N D+FAWS D+ G+ + I
Sbjct: 807 DQ-EETKCIPLQEAVPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQGVSRDII 865
Query: 309 CHRLALDPGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKAN 368
H L +DP ++ Q +R+M +E+ + EV +LL A+ I E+ YP WLANVV+V K N
Sbjct: 866 EHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKKN 925
Query: 369 GK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDK 428
GK MC+D+TDLNKAC KDS+PLP ID VD A+ + SL+D +SGYHQI + D+ K
Sbjct: 926 GKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKKEDEGK 985
Query: 429 TAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHH 488
+F T Y Y MP GLKN GAT+ R+M +V Q+ RN+ YV D++V S + +H
Sbjct: 986 ASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHI 1045
Query: 489 EELLEAFGRLRKHNMRLN 506
++L E F LR ++LN
Sbjct: 1046 KDLQETFVNLRSAGLKLN 1063
>gb|AAP52932.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532686|ref|NP_920645.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725940|gb|AAN04950.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881715|gb|AAM01116.1| Putative retroelement [Oryza
sativa]
Length = 1111
Score = 269 bits (687), Expect = 3e-70
Identities = 170/481 (35%), Positives = 254/481 (52%), Gaps = 24/481 (4%)
Query: 33 VTSAARKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQFNV 89
V+ +K +RAV+ + G +L I+ D GV D + V + F V
Sbjct: 524 VSKRQKKMQLRAVHNIVSAGDGVPRYLSQPISFGLEDTEGVLFPHQDMLFVSAEMAGFEV 583
Query: 90 QRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCERE 149
+ +L+D GSSAD+++ + ++GL L+ SL GF GE V V G + F +E
Sbjct: 584 RCILIDGGSSADVMFAGTYAKMGLPTLALSQAPTSLRGFGGEAVQVLGQALIKVAFGSQE 643
Query: 150 NIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQKIA 209
N + ++ + ++ +YN I R TL + AV +H L G G I V
Sbjct: 644 NRREEEILFDIVDIPYNYNAIFCRGTLTKFEAV---SHHNYLKLKMPGPAGVIVVKGSQP 700
Query: 210 RKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPIEETKELKFGD---- 265
DR EV+ E + + + +PTP + + + D
Sbjct: 701 SAVAATPFDR-------------EVHTLEVEGQEKAKS-IPKPTPHGKVIQRQIDDFDPA 746
Query: 266 KVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQTR 325
KV+ +G L+E + + +L++N+D+FAW D+ G+ P I H LA+ P K Q
Sbjct: 747 KVISLGGDLSEQEVDGILAVLKKNIDIFAWGLDDVGGVSPYLIMHYLAVKPEAKTKKQKL 806
Query: 326 RRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKACP 385
R+M ++++ + EVNKLL A I EI +P WLAN V +KK+NGK MCVD+TDLNK CP
Sbjct: 807 RKMSADRQEAAKVEVNKLLRAGVIQEIDHPEWLANPVPMKKSNGKWRMCVDFTDLNKMCP 866
Query: 386 KDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPF 445
KD +PLP ID+LVD + +L+S +DAYSGYHQI M+ +D TAF+ + + M F
Sbjct: 867 KDDFPLPRIDQLVDSTAGCKLISFLDAYSGYHQIHMNPTDIPMTAFIMPFGTFCHLRMSF 926
Query: 446 GLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNMRL 505
GL+N G T+ RL+ +V Q+GRN+E YV +++VKS +H +L E F LR M+L
Sbjct: 927 GLRNAGVTFTRLVYKVLGLQLGRNVEAYVDEIVVKSCKAFDHASDLQETFNNLRTAGMKL 986
Query: 506 N 506
N
Sbjct: 987 N 987
>gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1631
Score = 267 bits (682), Expect = 1e-69
Identities = 171/483 (35%), Positives = 259/483 (53%), Gaps = 37/483 (7%)
Query: 31 GGVTSAARKRYVRAVNAVTEVPFG---FLHPDITISSADFFGVEQHLYDPIVVLLRINQF 87
G ++ +K +R V+++T G +L+ I+ D GV DP+V+ I F
Sbjct: 502 GQLSKRQKKMQIRMVHSITSAGKGAPQYLNQLISFGPEDAEGVMFPHQDPLVISAEIAGF 561
Query: 88 NVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRGILDLDTTFCE 147
V+R+L+D GSSAD+I+ +A+ ++GL + LTP SL GF GE V V G L F
Sbjct: 562 EVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVRVLGQALLLIAFGS 621
Query: 148 RENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASGRIGRISVDQK 207
EN + ++ + V+ +YN I GR TLN+ A+ + +K +G I +
Sbjct: 622 GENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPAGVIVVKGLQSS 681
Query: 208 IARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPIEETKELKFGD-- 265
A K I+R H N P + TP + +++ D
Sbjct: 682 AASKSDLAIINRAVHCVQTEPHE-RPKNTP-------------KLTPHGKITKVQIDDAD 727
Query: 266 --KVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALDPGIKLVTQ 323
K++ +G + E + + + ++L++N+++FAWS + P IK
Sbjct: 728 PTKLVSLGDDMGEEEVESMLEVLKKNINIFAWSPDE----------------PDIKPRKH 771
Query: 324 TRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCVDYTDLNKA 383
+M ++++ + EV KLL A I EI +P WLAN V+V+K+NGK MCVD+TDLNKA
Sbjct: 772 KLCKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKA 831
Query: 384 CPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTM 443
CPKD +PLP ID+LVD + EL+S +DAYSGYHQI M+ D KT+F+T + + M
Sbjct: 832 CPKDDFPLPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLKM 891
Query: 444 PFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAFGRLRKHNM 503
PFGL+N G T+ RL+ +V Q+GRN+E YV D++VKS +H +L E F LR +
Sbjct: 892 PFGLRNAGTTFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGI 951
Query: 504 RLN 506
+LN
Sbjct: 952 KLN 954
>ref|XP_474681.1| OSJNBa0027O01.10 [Oryza sativa (japonica cultivar-group)]
gi|38346194|emb|CAD39523.2| OSJNBa0027O01.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2020
Score = 266 bits (680), Expect = 2e-69
Identities = 165/431 (38%), Positives = 226/431 (52%), Gaps = 32/431 (7%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV L + + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 613 MVVSLTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRP-SQPIIGVTPGHTWPLG 671
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 672 HIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 728
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C D S G G+ R+ P
Sbjct: 729 PGGPISVHGDLKVALACLEQRADHLAAASKPEG----------------GDERLGASAPA 772
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + GD+V E L L N D+FAW DM G+ I HRLA+
Sbjct: 773 TPRQRMITGDEV----------PEDALVSFLRANADVFAWRPADMVGVPREVIEHRLAVR 822
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG + V Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 823 PGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 882
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI+M D++KTAF+T
Sbjct: 883 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPI 942
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y TMPFGLKN G T+QR +Q+GRN+E YV D++VK+ + +L E F
Sbjct: 943 GTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETF 1002
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 1003 ESLRSARIKLN 1013
>gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 266 bits (679), Expect = 2e-69
Identities = 165/431 (38%), Positives = 225/431 (51%), Gaps = 32/431 (7%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV I + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 613 MVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQP-SQPIIGVTPGHTWPLG 671
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 672 HIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 728
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C DR S G G+ R+ P
Sbjct: 729 PGGPISVRGDLKVALACMEQRADRLAAASKPEG----------------GDERLGPSAPT 772
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + GD+V E L L N D+FAW DM G+ I HRLA+
Sbjct: 773 APRQRMATGDEV----------PEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAVR 822
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG + V Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 823 PGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 882
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI+M D++KTAF+T
Sbjct: 883 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPV 942
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y +MPFGLKN G T+QR Q+GRN+E YV D++VK+ + +L E F
Sbjct: 943 GTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETF 1002
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 1003 ENLRSARIKLN 1013
>gb|AAP53982.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37534786|ref|NP_921695.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1807
Score = 265 bits (678), Expect = 3e-69
Identities = 165/431 (38%), Positives = 224/431 (51%), Gaps = 32/431 (7%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV + + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 565 MVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMILRP-SQPIIGVTPGHTWPLG 623
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 624 HIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 680
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C DR S G G+ R+ P
Sbjct: 681 PNGPISVHGDLKVALACMEQRADRLAVVSKPEG----------------GDERLGTSAPA 724
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + D+V E L L N D+FAW DM G+ I HRLA+
Sbjct: 725 APRQRIVTSDEV----------PEDALGSFLRANADVFAWRPADMPGVPREVIEHRLAVR 774
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG +LV Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 775 PGARLVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 834
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI M D++KTAF+T
Sbjct: 835 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIHMAREDEEKTAFITPI 894
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y TMPFGLKN G T+QR Q+GRN+E YV D++VK+ + +L E F
Sbjct: 895 GTYCYTTMPFGLKNAGPTFQRTTRISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETF 954
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 955 ESLRSARIKLN 965
>gb|AAU44282.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1992
Score = 265 bits (677), Expect = 4e-69
Identities = 165/431 (38%), Positives = 225/431 (51%), Gaps = 32/431 (7%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV I + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 578 MVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRP-SQPIIGVTPGHTWPLG 636
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 637 HIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 693
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C DR S G G+ R+ P
Sbjct: 694 PDGPISVHGDLKVALACMEQRADRLAVVSKPEG----------------GDERLGTSAPA 737
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + GD+V E L L N D+FAW DM G+ I HRLA+
Sbjct: 738 APRQRIVTGDEV----------PEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAVR 787
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG + V Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 788 PGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 847
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI+M D++KTAF+T
Sbjct: 848 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPV 907
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y +MPFGLKN G T+QR Q+GRN+E YV D++VK+ + +L E F
Sbjct: 908 GTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETF 967
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 968 ESLRSARIKLN 978
>gb|AAX95884.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1920
Score = 265 bits (677), Expect = 4e-69
Identities = 165/431 (38%), Positives = 225/431 (51%), Gaps = 32/431 (7%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV + + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 613 MVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRP-SQPIIGVTPGHTWPLG 671
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 672 HIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 728
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C D S G GE R+ P
Sbjct: 729 PGGPISVHGDLKVALACLEQRADHLAATSKPEG----------------GEERLGASAPA 772
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + GD+V E L L N D+FAW DM G+ I HRLA+
Sbjct: 773 TPRQRMITGDEV----------PEDALVSFLRANADVFAWRPTDMPGVPREVIEHRLAVR 822
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG + V Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 823 PGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 882
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI+M D++KTAF+T
Sbjct: 883 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPI 942
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y TMPFGLKN G T+QR +Q+GRN+E YV D++VK+ + +L E F
Sbjct: 943 GTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETF 1002
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 1003 ESLRSARIKLN 1013
>ref|NP_917378.1| P0445H04.33 [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 265 bits (676), Expect = 5e-69
Identities = 164/431 (38%), Positives = 226/431 (52%), Gaps = 29/431 (6%)
Query: 78 IVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTPYTGSLVGFAGEQVWVRG 137
+VV + + RVL+D G++ +I+ AFD + L P + ++G W G
Sbjct: 613 MVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMMLRP-SQPIIGVTPGHTWPLG 671
Query: 138 ILDLDTTFCERENIKMLKVRYLVLRAMGSYNIIIGRNTLNRLCAVISTAHTAVKYLLASG 197
+DL TF N + +V + V YN ++GR L + A + A+ +K G
Sbjct: 672 HIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKM---PG 728
Query: 198 RIGRISV--DQKIARKCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRGEGRVNRPTPI 255
G ISV D K+A C DR S G G+ R++ P
Sbjct: 729 PDGPISVHGDLKVALACMEQRADRLAVVSKPEG----------------GDERLDTSAPA 772
Query: 256 EETKELKFGDKVLKIGTRLTESQEQRLSKLLEENLDLFAWSHKDMSGIDPNFICHRLALD 315
+ + D+V +E L L N D+FAW DM G+ I HRLA+
Sbjct: 773 APKQRIVTSDEV-------PVKEEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAVR 825
Query: 316 PGIKLVTQTRRRMGDEKEKVIQQEVNKLLAAEFI*EIKYPTWLANVVMVKKANGK*PMCV 375
PG + V Q RR E++ I++EV +LL A FI E+ +P WLAN V+V KANGK MC+
Sbjct: 826 PGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 885
Query: 376 DYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMTAR 435
DYTDLNKACPKD YPLP ID++VD + +LL +DAYSGYHQI+M D++KTAF+T
Sbjct: 886 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPI 945
Query: 436 ANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANHHEELLEAF 495
Y Y TMPFGLKN G T+QR Q+GRN+E YV D++VK+ + +L E F
Sbjct: 946 GTYCYTTMPFGLKNAGPTFQRTTRISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETF 1005
Query: 496 GRLRKHNMRLN 506
LR ++LN
Sbjct: 1006 ESLRSARIKLN 1016
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.145 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,103,927,647
Number of Sequences: 2540612
Number of extensions: 43032899
Number of successful extensions: 164782
Number of sequences better than 10.0: 3124
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 1393
Number of HSP's that attempted gapping in prelim test: 160943
Number of HSP's gapped (non-prelim): 4124
length of query: 764
length of database: 863,360,394
effective HSP length: 136
effective length of query: 628
effective length of database: 517,837,162
effective search space: 325201737736
effective search space used: 325201737736
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0368c.9