BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0359.2
(453 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 532 e-150
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 531 e-149
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 529 e-149
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 528 e-148
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 528 e-148
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 526 e-148
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 524 e-147
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 523 e-147
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 523 e-147
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 522 e-146
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 521 e-146
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 521 e-146
gb|AAL66759.1| putative pol protein [Zea mays] 521 e-146
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 520 e-146
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 519 e-146
gb|AAD09019.1| copia protein [Zea mays] 518 e-145
gb|AAL75483.1| putative pol protein [Zea mays] 517 e-145
gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cult... 516 e-145
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 516 e-145
gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza s... 512 e-143
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 532 bits (1371), Expect = e-150
Identities = 264/431 (61%), Positives = 330/431 (76%), Gaps = 2/431 (0%)
Query: 24 NVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLISF 83
N +V+GTKWVFRNK +E G V RNK RLVA+GYSQ EG+D+ ET+APVARLE+I +L+++
Sbjct: 1287 NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAY 1346
Query: 84 SLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAW 143
+ H L+QMDVKSAFLNG I +EVYV QPPGFED + P+HV+KL K+LYGLKQAPRAW
Sbjct: 1347 ATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPRAW 1406
Query: 144 YERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMMQA 203
YE L FL+ N F GK D TLF KT ++D+ + +IYVDDIIFGS N+S C+EFS++M
Sbjct: 1407 YECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQ 1466
Query: 204 EFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEK 263
+FEMSMMGELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+
Sbjct: 1467 KFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDL 1526
Query: 264 EDTSGK-VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLK 322
DT GK V QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL
Sbjct: 1527 -DTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLA 1585
Query: 323 GTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALS 382
T GL Y + S + L GY DAD+AG + RKST G CQFLG +LVSWASK+Q+++ALS
Sbjct: 1586 YTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALS 1645
Query: 383 TAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEV 442
TAEAEYI+A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI +
Sbjct: 1646 TAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAI 1705
Query: 443 KYHFIRGYVQK 453
+YHF+R + QK
Sbjct: 1706 RYHFLRDHQQK 1716
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 531 bits (1367), Expect = e-149
Identities = 263/431 (61%), Positives = 330/431 (76%), Gaps = 2/431 (0%)
Query: 24 NVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLISF 83
N +V+GTKWVFRNK +E G V RNK RLVA+GYSQ EG+D+ ET+APVARLE+I +L+++
Sbjct: 1419 NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLESIRILLAY 1478
Query: 84 SLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAW 143
+ H L+QMDVKSAFLNG I +EVYV QPPGFED + P+HV++L K+LYGLKQAPRAW
Sbjct: 1479 ATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAW 1538
Query: 144 YERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMMQA 203
YE L FL+ N F GK D TLF KT ++D+ + +IYVDDIIFGS N+S C+EFS++M
Sbjct: 1539 YECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQ 1598
Query: 204 EFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEK 263
+FEMSMMGELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+
Sbjct: 1599 KFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDL 1658
Query: 264 EDTSGK-VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLK 322
DT GK V QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL
Sbjct: 1659 -DTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLA 1717
Query: 323 GTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALS 382
T GL Y + S + L GY DAD+AG + RKST G CQFLG +LVSWASK+Q+++ALS
Sbjct: 1718 YTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALS 1777
Query: 383 TAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEV 442
TAEAEYI+A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI +
Sbjct: 1778 TAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAI 1837
Query: 443 KYHFIRGYVQK 453
+YHF+R + QK
Sbjct: 1838 RYHFLRDHQQK 1848
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 529 bits (1362), Expect = e-149
Identities = 250/436 (57%), Positives = 335/436 (76%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P +VIGTKWVF+NK NE G +VRNK RLVAQG++Q EG+D+ ETFAPVAR+EAI
Sbjct: 941 LVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAI 1000
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
LL++F+ + L+QMDVKSAFLNG+I +EVYV QPPGFE+ P+HVFKL K+LYGLK
Sbjct: 1001 RLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLK 1060
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWY+RL +FLL F GKVD TLF + D+ L V+IYVDDIIFG + ++ +F
Sbjct: 1061 QAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDF 1120
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
++ M+ EFEMSMMGEL YFLG+Q+ QTP+GT++HQ+KYTK+LL++F M TP+
Sbjct: 1121 AETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGS 1180
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T +L+ ++ V QK YR MIGSLLYLTASRPDI F+V LCARFQ+ PR +H AVKRI
Sbjct: 1181 TAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRI 1240
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
+RYL T+ G+ Y +S LSGY DAD+ G R +RKST G C FLG++L++W+S++QS
Sbjct: 1241 MRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQS 1300
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAE+EY++AA C +Q+LW+ L+DY I +P++CDNT+AI+++KNP+ HSR
Sbjct: 1301 SVAQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRT 1360
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R +V+K
Sbjct: 1361 KHIDIRFHFLRDHVEK 1376
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 528 bits (1361), Expect = e-148
Identities = 263/431 (61%), Positives = 330/431 (76%), Gaps = 2/431 (0%)
Query: 24 NVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLISF 83
N +V+GTKWVFRNK +E G V RNK RLVA+GYSQ EG+D+ ET+APVARLE+I +L+++
Sbjct: 590 NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAY 649
Query: 84 SLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAW 143
+ H L+QMDVKSAFLNG I +EVYV QPPGFED + P+HV++L K+LYGLKQAPRAW
Sbjct: 650 ATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAW 709
Query: 144 YERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMMQA 203
YE L FL+ N F GK D TLF KT ++D+ + +IYVDDIIFGS N+S C+EFS++M
Sbjct: 710 YECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQ 769
Query: 204 EFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEK 263
+FEMSMMGELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+
Sbjct: 770 KFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLDL 829
Query: 264 EDTSGK-VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLK 322
DT GK V QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL
Sbjct: 830 -DTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLA 888
Query: 323 GTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALS 382
T GL Y + S + L GY DAD+AG + RKST G CQFLG +LVSWASK+Q+++ALS
Sbjct: 889 YTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALS 948
Query: 383 TAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEV 442
TAEAEYI+A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI +
Sbjct: 949 TAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAI 1008
Query: 443 KYHFIRGYVQK 453
+YHF+R + QK
Sbjct: 1009 RYHFLRDHQQK 1019
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 528 bits (1359), Expect = e-148
Identities = 258/436 (59%), Positives = 331/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L ++P + +VIGTKW+FRNK +E G VVRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 1106 LVERPRDHNVIGTKWIFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPVARLEAI 1165
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ +I L QMDVKSAFLNG I++ V+V QPPGFED K P+HV+KL K+LYGLK
Sbjct: 1166 RILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLK 1225
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL FLL +F GKV+TTLF K DD + +IYVDDIIFGS N+ CKEF
Sbjct: 1226 QAPRAWYERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEF 1285
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
MM EFEMSM+GEL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM
Sbjct: 1286 GDMMSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMAT 1345
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
L+ + V KLYR MIGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRI
Sbjct: 1346 NGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRI 1405
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYLK + +GL Y K +++KL GY D+DYA + +RKST G+CQ LG +LVSW+SK+Q+
Sbjct: 1406 LRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQN 1465
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEAEY+SA C Q+LWMK L DY I + P+ CDN AI ++ NP+ HSR
Sbjct: 1466 SVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDRAIKIANNPVQHSRT 1525
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R +V K
Sbjct: 1526 KHIDIRHHFLRDHVTK 1541
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 526 bits (1356), Expect = e-148
Identities = 260/443 (58%), Positives = 336/443 (75%), Gaps = 2/443 (0%)
Query: 12 TRSKL-DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAP 70
TR+++ L ++P+ +VIGTKWVFRNK +E G V +NK RLVAQGY+Q EG+D+ ET+AP
Sbjct: 1338 TRNEVWSLVQRPKQ-NVIGTKWVFRNKQDENGVVTKNKARLVAQGYTQVEGLDFGETYAP 1396
Query: 71 VARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLK 130
VARLE+I +LI+++ NH+ L+QMDVKSAFLNG + + VYV QPPGFED KKP+HV+ L
Sbjct: 1397 VARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQPPGFEDPKKPNHVYLLH 1456
Query: 131 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSAN 190
K+LYGLKQAPRAWY+ L FL++N F GK D+TLF + +++ + +IYVDDIIFGS N
Sbjct: 1457 KALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLFTRKVDNELFVCQIYVDDIIFGSTN 1516
Query: 191 QSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTV 250
+ C+EFSK+M FEMSMMGELKYFLG QV Q EGT++ Q+KYT+++LKKF M ++
Sbjct: 1517 EKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEGTFLCQTKYTQDMLKKFGMEKAKH 1576
Query: 251 AKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETH 310
AKTPM L+ + V QKLYR MIGSLLYL ASRPDI+ SV +CARFQ++P++ H
Sbjct: 1577 AKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCASRPDIMLSVCMCARFQANPKDCH 1636
Query: 311 LTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVS 370
L AVKRILRYL T NLGL Y K S + L GY D+DYAG + +RKST G CQFLG +LVS
Sbjct: 1637 LVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVS 1696
Query: 371 WASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 430
W+SK+Q+ +ALSTAEAEYI+A C Q+LWMK L D+ + IP+ CDN +AI L+ N
Sbjct: 1697 WSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRDFGCEFNKIPLLCDNESAIKLANN 1756
Query: 431 PILHSRAKHIEVKYHFIRGYVQK 453
P+ HSR KHI+++ HF+R + K
Sbjct: 1757 PVQHSRTKHIDIRRHFLRDHEAK 1779
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 524 bits (1350), Expect = e-147
Identities = 258/436 (59%), Positives = 327/436 (74%), Gaps = 1/436 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L +P+ +V+GTKWVFRNK +E+G V RNK RLVA+GY+Q G+D+ ETFAPVARLE+I
Sbjct: 591 LVPRPKQ-NVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI 649
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++++ +H+ L+QMDVKSAFLNG I +EVYV QPPGFEDE+ PDHV KL K+LYGLK
Sbjct: 650 RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLK 709
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYE L FL+ N F GK D TLF KT D+ + +IYVDDIIFGS NQ C+EF
Sbjct: 710 QAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEF 769
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S++M +FEMSMMGEL YFLG QV Q +GT+I Q+KYT++LLK+F M ++ AKTPM
Sbjct: 770 SRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGT 829
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ V QK YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRI
Sbjct: 830 DGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI 889
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYL T GL Y K S + L GY D+DYAG + +RKST G CQFLG +LVSW SK+Q+
Sbjct: 890 LRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQT 949
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEAEY++A C Q+LWM+ L D+ S +P+ CDN +AI +++NP+ HSR
Sbjct: 950 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRT 1009
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R + QK
Sbjct: 1010 KHIDIRHHFLRDHQQK 1025
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 523 bits (1346), Expect = e-147
Identities = 256/436 (58%), Positives = 331/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P +VIGTKWVF+NKL E G +VRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 1317 LVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAI 1376
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ + L QMDVKSAFLNG I +EVYV QPPGFE+ K P+HVFKL+K+LYGLK
Sbjct: 1377 RILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLK 1436
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL +FLL+N F G VD TLF D L+V+IYVDDIIFG ++ +L +F
Sbjct: 1437 QAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF 1496
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S +M EFEMSMMGEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM
Sbjct: 1497 SDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMAT 1556
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI
Sbjct: 1557 TSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRI 1616
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
RY+K T+ G+ Y +S + + DAD+AG + +RKST G C FLG++LVSW+S++QS
Sbjct: 1617 FRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQS 1676
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAEAEY++AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR
Sbjct: 1677 SVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRT 1736
Query: 438 KHIEVKYHFIRGYVQK 453
KHIE++YHF+R V+K
Sbjct: 1737 KHIEIRYHFLRDNVEK 1752
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 523 bits (1346), Expect = e-147
Identities = 255/436 (58%), Positives = 330/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L ++P + +VIGTKW+FRNK +E G VVRNK RLVAQG +Q EG+D+ ETFAPVARLEAI
Sbjct: 933 LVERPRDHNVIGTKWIFRNKQDENGLVVRNKARLVAQGVTQVEGLDFGETFAPVARLEAI 992
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ +I L QMDVKS FLNG I++ V+V QPPGFED K P+HV+KL K+LYGLK
Sbjct: 993 RILLAFASCFDIKLFQMDVKSVFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLK 1052
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL FLL +F GKVDTTLF K DD + +IYVD IIFGS N+ CKEF
Sbjct: 1053 QAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDGIIFGSTNEVFCKEF 1112
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
MM EF+MSM+GEL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM
Sbjct: 1113 GDMMSREFDMSMIGELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMAT 1172
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
L+ ++ V KLYR MIGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRI
Sbjct: 1173 NGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRI 1232
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYLK + N+GL Y K +++KL GY +DYA + +RKST G+CQ LG +LVSW+SK+Q+
Sbjct: 1233 LRYLKHSSNIGLWYPKGAKFKLVGYSYSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQN 1292
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEA+Y+SA C Q+LWMK L DY I + P+ CDN +AI ++ NP+ HSR
Sbjct: 1293 SVALSTAEAKYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRT 1352
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R +V K
Sbjct: 1353 KHIDIRHHFLRDHVAK 1368
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 522 bits (1344), Expect = e-146
Identities = 256/436 (58%), Positives = 330/436 (74%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P +VIGTKWVF+NKL E G +VRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 932 LVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAI 991
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ + L QMDVKSAFLNG I +EVYV QPPGFE+ K P+HVFKL K+LYGLK
Sbjct: 992 RILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLK 1051
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL +FLL+N F G VD TLF D L+V+IYVDDIIFG ++ +L +F
Sbjct: 1052 QAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF 1111
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S +M EFEMSMMGEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM
Sbjct: 1112 SDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMAT 1171
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI
Sbjct: 1172 TSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRI 1231
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
RY+K T+ G+ Y +S + + DAD+AG + +RKST G C FLG++LVSW+S++QS
Sbjct: 1232 FRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQS 1291
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAEAEY++AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR
Sbjct: 1292 SVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRT 1351
Query: 438 KHIEVKYHFIRGYVQK 453
KHIE++YHF+R V+K
Sbjct: 1352 KHIEIRYHFLRDNVEK 1367
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 521 bits (1343), Expect = e-146
Identities = 255/436 (58%), Positives = 331/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P +VIGTKWVF+NKL E G +VRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 1317 LVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAI 1376
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ + L QMDVKSAFLNG I +EVYV QPPGFE+ K P+HVFKL+K+LYGLK
Sbjct: 1377 RILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLK 1436
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL +FLL+N F G VD TLF D L+V+IYVDDIIFG ++ +L +F
Sbjct: 1437 QAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF 1496
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S +M EFEMSMMGEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM
Sbjct: 1497 SDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMAT 1556
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+
Sbjct: 1557 TSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRM 1616
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
RY+K T+ G+ Y +S + + DAD+AG + +RKST G C FLG++LVSW+S++QS
Sbjct: 1617 FRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQS 1676
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAEAEY++AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR
Sbjct: 1677 SVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRT 1736
Query: 438 KHIEVKYHFIRGYVQK 453
KHIE++YHF+R V+K
Sbjct: 1737 KHIEIRYHFLRDNVEK 1752
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 521 bits (1343), Expect = e-146
Identities = 255/436 (58%), Positives = 331/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P +VIGTKWVF+NKL E G +VRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 1399 LVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAI 1458
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ + L QMDVKSAFLNG I +EVYV QPPGFE+ K P+HVFKL+K+LYGLK
Sbjct: 1459 RILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLK 1518
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL +FLL+N F G VD TLF D L+V+IYVDDIIFG ++ +L +F
Sbjct: 1519 QAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF 1578
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S +M EFEMSMMGEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM
Sbjct: 1579 SDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMAT 1638
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+
Sbjct: 1639 TSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRM 1698
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
RY+K T+ G+ Y +S + + DAD+AG + +RKST G C FLG++LVSW+S++QS
Sbjct: 1699 FRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQS 1758
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAEAEY++AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR
Sbjct: 1759 SVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRT 1818
Query: 438 KHIEVKYHFIRGYVQK 453
KHIE++YHF+R V+K
Sbjct: 1819 KHIEIRYHFLRDNVEK 1834
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 521 bits (1343), Expect = e-146
Identities = 258/436 (59%), Positives = 325/436 (74%), Gaps = 1/436 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L +P+ +V+GTKWVFRNK +E G V RNK RLVA+GY+Q G+D+ ETFAPVARLE+I
Sbjct: 1180 LVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI 1238
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++++ +H+ L+QMDVKSAFLNG I +EVYV QPPGFEDE+ PDHV KL K+LYGLK
Sbjct: 1239 RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLK 1298
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYE L FLL N F GK D TLF KT D+ + +IYVDDIIFGS NQ C+EF
Sbjct: 1299 QAPRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEF 1358
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S++M +FEMSMMGEL YFLG QV Q +GT+I Q+KYT++LLK+F M ++ AKTPM
Sbjct: 1359 SRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGT 1418
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ V QK YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRI
Sbjct: 1419 DGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI 1478
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYL T GL Y K S + L GY D+DYAG + +RKST G CQFLG +LVSW SK+Q+
Sbjct: 1479 LRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQT 1538
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEAEY++A C Q+LWM+ L D+ S +P+ CDN + I +++NP+ HSR
Sbjct: 1539 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRT 1598
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R + QK
Sbjct: 1599 KHIDIRHHFLRDHQQK 1614
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 520 bits (1340), Expect = e-146
Identities = 256/439 (58%), Positives = 331/439 (75%)
Query: 12 TRSKLDLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPV 71
TR+++ + +VIGTKW+FRNK +E G V+RNK RLVAQG++Q EG+D+ ETFAPV
Sbjct: 456 TRNEVWTLVERSRQNVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPV 515
Query: 72 ARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKK 131
ARLE+I +L++F+ N N L+QMDVKSAFLNG I++ VYV QPPGF+D K P+HV+KL K
Sbjct: 516 ARLESIRILLTFATNLNFKLYQMDVKSAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHK 575
Query: 132 SLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQ 191
+LY LKQAPRAWYE L +FL++N F GK D+TLF K + +DI + +IYVDDIIFGS N+
Sbjct: 576 ALYELKQAPRAWYECLRNFLVKNGFEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNK 635
Query: 192 SLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVA 251
S +EFS+MM FEMSMMGELK+FLG+Q+ Q EGT+I Q+KY K++LKKF M +
Sbjct: 636 SFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPI 695
Query: 252 KTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHL 311
TPM L+ + V QK+YR +IGSLLYL ASRPDI+ SV +CARFQ+ P+E HL
Sbjct: 696 HTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHL 755
Query: 312 TAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSW 371
AVKRILRYL T NLGL Y K + + L GY DADYAG + +RKST G CQFLG +LVSW
Sbjct: 756 VAVKRILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSW 815
Query: 372 ASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNP 431
+SK+Q+++ALSTAEAEYIS C Q++WMK L DY + S IP+ CDN +AI ++ NP
Sbjct: 816 SSKKQNSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNP 875
Query: 432 ILHSRAKHIEVKYHFIRGY 450
+ HSR KHI++++HF+R +
Sbjct: 876 VQHSRTKHIDIRHHFLRDH 894
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 519 bits (1336), Expect = e-146
Identities = 255/436 (58%), Positives = 328/436 (74%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P VIGTKWVF+NKL E G +VRNK RLVAQG++Q EG+D+ ETFAPVARLEAI
Sbjct: 1321 LVEPPLGFSVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAI 1380
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ + L QMDVKSAFLNG I +EVYV QPPGFE+ K P+HVFKL K+LYGLK
Sbjct: 1381 RILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLK 1440
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL +FLL+N F G VD TLF D L+V+IYVDDIIFG ++ +L +F
Sbjct: 1441 QAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF 1500
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
+M EFEMSMMGEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM
Sbjct: 1501 FDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMAT 1560
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI
Sbjct: 1561 TSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRI 1620
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
RY+K T+ G+ Y +S + + DAD+AG + +RKST G C FLG++LVSW+S++QS
Sbjct: 1621 FRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQS 1680
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAEAEY++AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR
Sbjct: 1681 SVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRT 1740
Query: 438 KHIEVKYHFIRGYVQK 453
KHIE++YHF+R V+K
Sbjct: 1741 KHIEIRYHFLRDNVEK 1756
>gb|AAD09019.1| copia protein [Zea mays]
Length = 447
Score = 518 bits (1334), Expect = e-145
Identities = 256/433 (59%), Positives = 323/433 (74%), Gaps = 1/433 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L +P+ +V+GTKWVFRNK NE G V RNK RLVA+GY+Q G+D+ ETFAPVARLE+I
Sbjct: 16 LVPRPKQ-NVVGTKWVFRNKQNEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI 74
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++++ +H+ L+QMDVKSAFLNG I +EVYV QPPGFEDE+ PDHV KL K+LYGLK
Sbjct: 75 RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALYGLK 134
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYE L FL+ N F GK D TLF KT D+ + +IYVDDIIFGS NQ C+EF
Sbjct: 135 QAPRAWYECLRDFLIANTFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEF 194
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
S++M +FEMSMMGEL YFLG QV Q + T+I Q+KYT++LLK+F M ++ AKTPM
Sbjct: 195 SRVMTQKFEMSMMGELNYFLGFQVKQLKDDTFITQTKYTQDLLKRFGMKDAKPAKTPMGT 254
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ V QK YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRI
Sbjct: 255 NGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI 314
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYL T G+ Y K S + L GY D+DYAG + +RKST G CQFLG +LVSW SK+Q+
Sbjct: 315 LRYLVTTPCFGIWYPKGSNFDLIGYLDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQT 374
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEAEY++A C Q+LWM+ L D+ S +P+ CDN +AI +++NPI HSR
Sbjct: 375 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRIAENPIEHSRT 434
Query: 438 KHIEVKYHFIRGY 450
KHI++++HF+R +
Sbjct: 435 KHIDIRHHFLRDH 447
>gb|AAL75483.1| putative pol protein [Zea mays]
Length = 1553
Score = 517 bits (1331), Expect = e-145
Identities = 258/448 (57%), Positives = 329/448 (72%), Gaps = 6/448 (1%)
Query: 11 TTRSKL-----DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYT 65
TTRS+L L +P+ +V+GTKWVFRNK +E G V RNK RLVA+G +Q G+D+
Sbjct: 1064 TTRSRLVNFFWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGCAQVAGLDFE 1122
Query: 66 ETFAPVARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDH 125
ETFAPVARLE+I +L+++ +H+ L QMDVKSAFLNG I +EVYV QPPGFEDE+ PDH
Sbjct: 1123 ETFAPVARLESIRILLAYVAHHSFRLFQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDH 1182
Query: 126 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDII 185
V KL K+LYGL QAPRAWYE L +FL+ N F GK D TLF KT D+ + +IYVDDII
Sbjct: 1183 VCKLSKALYGLMQAPRAWYECLRNFLIANAFKVGKADPTLFTKTCNGDLFVCQIYVDDII 1242
Query: 186 FGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 245
FGS NQ C+EFS++M +FEM MMGEL YFLG QV Q +GT+I Q+KYT++L+K+F M
Sbjct: 1243 FGSTNQKSCEEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQDLIKRFGM 1302
Query: 246 LESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 305
++ AKTPM ++ V QK YR MIGSLLYL ASRPDI+ SV +CARFQSD
Sbjct: 1303 KDAKPAKTPMGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSD 1362
Query: 306 PRETHLTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLG 365
PRE HL AVKRILRYL T G+ Y K S + L GY D+DYAG + +RKST G CQFLG
Sbjct: 1363 PRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKSTSGTCQFLG 1422
Query: 366 SNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAI 425
+LVSW+SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ + +P+ CDN +AI
Sbjct: 1423 RSLVSWSSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLNKVPLLCDNESAI 1482
Query: 426 SLSKNPILHSRAKHIEVKYHFIRGYVQK 453
++ NP+ HSR KHI++++HF+R + QK
Sbjct: 1483 RMADNPVEHSRTKHIDIRHHFLRDHQQK 1510
>gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1005
Score = 516 bits (1329), Expect = e-145
Identities = 253/436 (58%), Positives = 329/436 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L ++P + +VIGTKWVFRNK +E G VVRNK RLVAQG++Q EG+D+ ETFAPVARLE I
Sbjct: 527 LVERPRDHNVIGTKWVFRNKQDENGLVVRNKVRLVAQGFTQVEGLDFGETFAPVARLEDI 586
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ +I L Q+DVKSAFLNG I++ V+V QPPGFED K P+HV+KL K+LYGLK
Sbjct: 587 RILLTFASCFDIKLFQIDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLK 646
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYERL FLL +F GKVDTT+F K DD + +IYVDDIIFGS N+ CKEF
Sbjct: 647 QAPRAWYERLRDFLLSKDFKIGKVDTTIFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEF 706
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
MM EFEMSM+ EL +FLG+Q+ Q +GT++ Q+KY K+LLK+F++ ++ KTPM
Sbjct: 707 GDMMSREFEMSMIRELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFSLEDAKPIKTPMAT 766
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ ++ V KLYR MIGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRI
Sbjct: 767 NGHFDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRI 826
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYLK + +GL Y K +++KL GY D+DYAG + +RKST G+CQ LG +LVSW+SK+Q+
Sbjct: 827 LRYLKHSCTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQN 886
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ LSTAEAEY+SA Q+LWMK L DY I + + CDN +AI ++ NP+ HSR
Sbjct: 887 SVDLSTAEAEYVSAGSYCAQLLWMKQTLLDYGISFTKTTLLCDNDSAIKIANNPVQHSRT 946
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R +V K
Sbjct: 947 KHIDIRHHFLRHHVAK 962
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 516 bits (1328), Expect = e-145
Identities = 252/434 (58%), Positives = 328/434 (75%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L ++P + +VIGTKWVFRNK +EKG VVR+K RLVAQ ++Q EG+D+ ETFAPVARLEAI
Sbjct: 1496 LVERPRDHNVIGTKWVFRNKQDEKGLVVRSKARLVAQDFTQVEGLDFGETFAPVARLEAI 1555
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L++F+ +I L QMDVKSAFLNG I++ V+V QPPGFED K P+HV+KL K+LYGLK
Sbjct: 1556 RILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLK 1615
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
APRAWYERL FLL +F GKVDTTL K DD ++ +IYVDDIIFGS N+ CKEF
Sbjct: 1616 PAPRAWYERLRDFLLPKDFKIGKVDTTLSTKIIDDDFVVCQIYVDDIIFGSTNEVFCKEF 1675
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
MM EFEMSM+GEL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM
Sbjct: 1676 GDMMSREFEMSMVGELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMAT 1735
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
L+ ++ V KLY MIGSLLYLTASRPDI+FSV +CARFQ+ P++ HL AVKRI
Sbjct: 1736 NGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVCMCARFQAAPKKCHLVAVKRI 1795
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYLK + +GL Y K +++K+ Y D DYA + +RKST G+CQ LG +LVSW+SK+Q+
Sbjct: 1796 LRYLKHSSTIGLWYPKGAKFKIVSYSDLDYAVCKVDRKSTSGSCQMLGRSLVSWSSKKQN 1855
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++ALSTAEAEY+SA C Q+LWMK L DY I + P+ CDN +AI ++ NP+ HSR
Sbjct: 1856 SVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRT 1915
Query: 438 KHIEVKYHFIRGYV 451
KHI+++YHF++ +V
Sbjct: 1916 KHIDIRYHFLKDHV 1929
>gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|37530622|ref|NP_919613.1| putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|20042883|gb|AAM08711.1| Putative Zea
mays retrotransposon Opie-2 [Oryza sativa]
gi|16924045|gb|AAL31657.1| Putative Zea mays
retrotransposon Opie-2 [Oryza sativa]
Length = 494
Score = 512 bits (1318), Expect = e-143
Identities = 243/436 (55%), Positives = 327/436 (74%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L + P ++IGTKWVF+NK NE G +VRNK RLVAQG++Q EG+D+ ETFAPVAR+EAI
Sbjct: 16 LVEPPSGHNIIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFNETFAPVARIEAI 75
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
LL++F+ + L QMDVKSAFLNG+I +EVYV QPPGFE+ P+HVF+L K+LYGLK
Sbjct: 76 RLLLAFAASKGFKLFQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFELSKALYGLK 135
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWY+R +FLL F GKVD LF + D+ L V+IYVDDIIF ++ +L EF
Sbjct: 136 QAPRAWYDRFKNFLLAKGFTMGKVDKMLFVLKHGDNQLFVQIYVDDIIFDCSSHALVVEF 195
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
++ M+ EFEMSMMGEL YFLG+Q+ QTP+GT++HQ+KYTK+LL+ F M TP+
Sbjct: 196 AETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRWFKMENCKPISTPIGS 255
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+L+ ++ V QK YR MIGSLLYLTA RPDI F V LCARFQ+ PR +H AVKRI
Sbjct: 256 IAVLDPDEDGEAVNQKEYRSMIGSLLYLTAYRPDIQFVVCLCARFQASPRASHRQAVKRI 315
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
+RYL T+ G+ Y +S LSGY DAD+ G R +RKST G C FLG++L++W+S++QS
Sbjct: 316 MRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQS 375
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRA 437
++A STAE+EY++AA C +Q+LW+ L+DY + +P++CDNT+AI+++KNP+ HS
Sbjct: 376 SVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVPLFCDNTSAINIAKNPVQHSHT 435
Query: 438 KHIEVKYHFIRGYVQK 453
KHI++++HF+R +V+K
Sbjct: 436 KHIDIRFHFLRDHVEK 451
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 741,718,498
Number of Sequences: 2540612
Number of extensions: 29879998
Number of successful extensions: 61910
Number of sequences better than 10.0: 1646
Number of HSP's better than 10.0 without gapping: 1625
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 58201
Number of HSP's gapped (non-prelim): 2019
length of query: 453
length of database: 863,360,394
effective HSP length: 131
effective length of query: 322
effective length of database: 530,540,222
effective search space: 170833951484
effective search space used: 170833951484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0359.2