BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.14
(1622 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 877 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 874 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 870 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 867 0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 860 0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 855 0.0
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 855 0.0
gb|AAL35396.1| Opie2a pol [Zea mays] 843 0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 842 0.0
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 837 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 834 0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 833 0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 833 0.0
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 832 0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 830 0.0
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 823 0.0
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 817 0.0
gb|AAP94592.1| retrotransposon Opie-2 [Zea mays] 754 0.0
ref|XP_463224.1| putative integrase [Oryza sativa (japonica cult... 749 0.0
gb|AAL66759.1| putative pol protein [Zea mays] 749 0.0
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 877 bits (2265), Expect = 0.0
Identities = 432/880 (49%), Positives = 599/880 (67%), Gaps = 5/880 (0%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ VRG+P LK +C CQ GK K+
Sbjct: 681 CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 740
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K E+ VF
Sbjct: 741 QKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVF 800
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN +F S GI H+FS TPQQNG+VERKN
Sbjct: 801 KELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKN 860
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE AR ML + + WAE +NTACYI NR+++RR T YE+WK KP++ +FH
Sbjct: 861 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFH 920
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 921 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSP 980
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
+ + + E L +V+D K+ E AE + +E+ + R +RI HPKELI+
Sbjct: 981 ARKKDVEEDVRTLGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELII 1040
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N+V
Sbjct: 1041 GDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEV 1096
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF PVARLE
Sbjct: 1097 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1156
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IRLL+ + L+QMDVKSAFLNGY++EEVYV QP GF D +PDHV++LKK+LYG
Sbjct: 1157 SIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYG 1216
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + + +
Sbjct: 1217 LKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLR 1276
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP
Sbjct: 1277 HFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPA 1336
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L K++A V Q LYR MIGSLLYLTASRPD ++V +CAR+Q++P+ +HLT VK
Sbjct: 1337 PTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVK 1396
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RIL+Y+ GT++ G+MY S L GYCD D+AG RKST G C +LG+NL+SW SK+
Sbjct: 1397 RILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1456
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HS
Sbjct: 1457 QNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHS 1516
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
R KHI++++H+IRD V V+ LK VDT+ + ADI+ KAL
Sbjct: 1517 RTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKAL 1556
Score = 154 bits (388), Expect = 3e-35
Identities = 127/468 (27%), Positives = 205/468 (43%), Gaps = 64/468 (13%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTA 65
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D EGK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
E+ +L + KA L + + ++ I A +E LK++HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLA 131
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIE 185
K+E+ M+ E I + + L + T + V +++RSLP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 186 LTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESE 245
+D+ M ++ELI L+ EL S+ + + K++A S +E E
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSN----------------DEGE 235
Query: 246 EASEDSDEDE-----LTLISKRLNHIWK--------HKQSKYRGSGKAKGKSESSGQKKS 292
E D D DE + L+ K+ N + H Q+ K + S K S
Sbjct: 236 EDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPS 295
Query: 293 SIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMVTFDESESE-DVDSDGEVQG 351
K + C C+ GH ++CP KKH +K L V ++ESE + DSD +V
Sbjct: 296 HSKGIQCHGCEGYGHIIAECP-----THLKKH---RKGLSVCQSDTESEQESDSDRDVNA 347
Query: 352 LMTIVKDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLTK 411
L I + E +SD ++E+ + EL + + K +L +
Sbjct: 348 LTGIFETAE----------------DSSDTDSEI----TFDELAASYRKLCIKSEKILQQ 387
Query: 412 HKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLEE 459
+LKK + HE+ ISELK + L + +K I L +
Sbjct: 388 EAQLKKVIADLEAEKEAHEEEISELKGEVGFLNSKLETMKKSIKMLNK 435
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 874 bits (2258), Expect = 0.0
Identities = 431/880 (48%), Positives = 598/880 (66%), Gaps = 5/880 (0%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ VRG+P LK +C CQ GK K+
Sbjct: 679 CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 738
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWVKF+ K E+ VF
Sbjct: 739 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVF 798
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN + S GI H+FS TPQQNG+VERKN
Sbjct: 799 KELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKN 858
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE AR ML + + WAE +NTACYI NR+++RR T YE+WK KP++ +FH
Sbjct: 859 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFH 918
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 919 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSP 978
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
+ + + E +V+D K+ E AE + +E+ + R +RI HPKELI+
Sbjct: 979 ARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELII 1038
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N+V
Sbjct: 1039 GDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEV 1094
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF PVARLE
Sbjct: 1095 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1154
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IRLL+ + L+QMDVKSAFLNGY++EEVYV QP GF D +PDHV++LKK+LYG
Sbjct: 1155 SIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYG 1214
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + + +
Sbjct: 1215 LKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLR 1274
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP
Sbjct: 1275 HFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPA 1334
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L K++A V Q LYR MIGSLLYLTASRPD ++V +CAR+Q++P+ +HLT VK
Sbjct: 1335 PTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVK 1394
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RIL+Y+ GT++ G+MY S L GYCD D+AG RKST G C +LG+NL+SW SK+
Sbjct: 1395 RILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1454
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HS
Sbjct: 1455 QNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHS 1514
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
R KHI++++H+IRD V V+ LK VDT+ + ADI+ KAL
Sbjct: 1515 RTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKAL 1554
Score = 151 bits (382), Expect = 2e-34
Identities = 124/462 (26%), Positives = 206/462 (43%), Gaps = 57/462 (12%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTA 65
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D EGK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
E+ +L + KA L + + ++ I A +E LK++HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLA 131
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIE 185
K+E+ M+ E I + + L + T + V +++RSLP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 186 LTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESE 245
+D+ M ++ELI L+ EL S+ + + K++A S E E +E +
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYD 240
Query: 246 EASEDSDEDELTLISKRLNHIWK--------HKQSKYRGSGKAKGKSESSGQKKSSIKEV 297
+++ + + L+ K+ N + H Q+ K + S K S K +
Sbjct: 241 LNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGI 300
Query: 298 TCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMTIV 356
C C+ GH ++CP KKH +K L V ++ESE + DSD +V L I
Sbjct: 301 QCHGCEGYGHIIAECP-----THLKKH---RKGLSVCQSDTESEQESDSDRDVNALTGIF 352
Query: 357 KDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLK 416
+ + ED + D F +TS K + K +L + +LK
Sbjct: 353 E---------------TAEDSSDTDSEITFDELATSYRKLCI-----KSEKILQQEAQLK 392
Query: 417 KDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLE 458
K + H++ ISELK + L NS L+N +++
Sbjct: 393 KVIADLEAEKEAHKEEISELKGEVGFL---NSKLENMTKSIK 431
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 870 bits (2247), Expect = 0.0
Identities = 429/880 (48%), Positives = 597/880 (67%), Gaps = 5/880 (0%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ + VRG+P LK +C CQ GK K+
Sbjct: 681 CLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSH 740
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K + VF
Sbjct: 741 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVF 800
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN +F S GI H+FS TPQQNG+VERKN
Sbjct: 801 KKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKN 860
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE AR ML + + WAE +NTACYI NR+++RR T YE+WK KP++ +FH
Sbjct: 861 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFH 920
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 921 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSP 980
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
+ + + E +V+D K+ E AE + +E+ + R +RI HPKELI+
Sbjct: 981 ARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELII 1040
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N+V
Sbjct: 1041 GDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEV 1096
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF PVARLE
Sbjct: 1097 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1156
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IRLL+ + L+QMDVKSAFLNGY++EEVYV QP GF D +PDHV++LKK+LYG
Sbjct: 1157 SIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYG 1216
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + + +
Sbjct: 1217 LKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLR 1276
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP
Sbjct: 1277 HFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPA 1336
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L K++A V QK YR MIGSLLYLTASRPD ++V +CAR+Q++P+ +HL VK
Sbjct: 1337 PTHLKLSKDEAGTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVK 1396
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RIL+Y+ GT++ G+MY S L GYCD D+AG RKST G C +LG+NL+SW SK+
Sbjct: 1397 RILKYVNGTSDYGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1456
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HS
Sbjct: 1457 QNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHS 1516
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
R KHI++++H+IRD V V+ LK VDT+ + ADI+ KAL
Sbjct: 1517 RTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKAL 1556
Score = 150 bits (380), Expect = 3e-34
Identities = 127/467 (27%), Positives = 206/467 (43%), Gaps = 67/467 (14%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTA 65
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D EGK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
E+ +L + KA L + + ++ I A E LK +HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLA 131
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIE 185
K+E+ M+ E I + + L + T + V +++RSLP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 186 LTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESE 245
+D+ M ++ELI L+ EL S+ + + K++A S +E E
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSN----------------DEGE 235
Query: 246 EASEDSDEDE-----LTLISKRLNHIWK--------HKQSKYRGSGKAKGKSESSGQKKS 292
E D D DE + L+ K+ N + H Q+ K + S K S
Sbjct: 236 EDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPS 295
Query: 293 SIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMVTFDESESE-DVDSDGEVQG 351
K + C C+ GH ++CP KKH +K L V ++ESE + DSD +V
Sbjct: 296 HSKGIQCHGCEGYGHIIAECP-----THLKKH---RKGLSVCQSDTESEQESDSDRDVNA 347
Query: 352 LMTIVKDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLTK 411
L+ I + E +SD ++E+ + EL + + K +L +
Sbjct: 348 LIGIFETAE----------------DSSDTDSEI----TFDELAASYRKLCIKSEKILQQ 387
Query: 412 HKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLE 458
+LKK + H++ ISELK + L NS L+N +++
Sbjct: 388 EAQLKKVIADLEAEKEAHKEEISELKGEVGFL---NSKLENMTKSIK 431
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 867 bits (2241), Expect = 0.0
Identities = 428/880 (48%), Positives = 593/880 (66%), Gaps = 5/880 (0%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ VRG+P LK +C CQ GK K+
Sbjct: 682 CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 741
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K ++ VF
Sbjct: 742 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVF 801
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN KF S GI H+FS TPQQNG+VERKN
Sbjct: 802 KELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKN 861
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE AR ML + + WAE +NTACYI NR+++RR T YE+WK KP + +FH
Sbjct: 862 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFH 921
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 922 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTP 981
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
+ + + E +V+D K+ E AE + +E + R RI HPKELI+
Sbjct: 982 ARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELII 1041
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N+V
Sbjct: 1042 GDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEV 1097
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF PVARLE
Sbjct: 1098 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLE 1157
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IRLL+ + L+QMDVKSAFLNGY++EE YV QP GF D +PDHV++LKK+LYG
Sbjct: 1158 SIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYG 1217
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + + +
Sbjct: 1218 LKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLR 1277
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K ++KKF M ++ +TP
Sbjct: 1278 HFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPA 1337
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L K++A V Q LYR MIGSLLYLTASRPD ++V +CAR+Q++P+ +HL VK
Sbjct: 1338 PTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVK 1397
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RIL+Y+ GT++ G+MY S L GYCD D+AG RKST G C +LG+NL+SW SK+
Sbjct: 1398 RILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1457
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HS
Sbjct: 1458 QNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHS 1517
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
R KHI++++H+IR+ V V+ L+ VDT+ + ADI+ KAL
Sbjct: 1518 RTKHIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTKAL 1557
Score = 147 bits (371), Expect = 3e-33
Identities = 124/468 (26%), Positives = 205/468 (43%), Gaps = 68/468 (14%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTA 65
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D EGK P + T
Sbjct: 12 RPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTK 71
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
E+ +L + KA L + + ++ I A +E LK +HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLA 131
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIE 185
K+E+ M+ E I + + L + T + V +++RSLP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 186 LTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESE 245
+D+ M ++ELI L+ EL S+ + + K++A S +E E
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSN----------------DEGE 235
Query: 246 EASEDSDEDE-----LTLISKRLNHIWK--------HKQSKYRGSGKAKGKSESSGQKKS 292
E D D DE + + K+ N + H ++ K S +K S
Sbjct: 236 EDEYDLDTDEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPS 295
Query: 293 SIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQ 350
K + C C+ GH K++CP K K +K L V D++ESE + DSD +V
Sbjct: 296 HSKGIQCRGCEGYGHIKAECPTHLK--------KQRKGLSVCRSDDTESEQESDSDRDVN 347
Query: 351 GLMTIVKDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLT 410
L + + +SD ++E+ + EL ++ K +L
Sbjct: 348 AL----------------TGRFESAEDSSDTDSEI----TFDELAIFYRELCIKSEKILQ 387
Query: 411 KHKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLE 458
+ +LKK + HE+ IS+LK + L NS L+N +++
Sbjct: 388 QEAQLKKVIANLEAEKEAHEEEISKLKGEVGFL---NSKLENMTKSIK 432
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 860 bits (2222), Expect = 0.0
Identities = 426/880 (48%), Positives = 590/880 (66%), Gaps = 5/880 (0%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ VRG+P LK +C CQ GK K+
Sbjct: 655 CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSN 714
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TSR LELLH+DL GP++ ES+G KRY V+VDD+SR+TWV F+ K ++ VF
Sbjct: 715 QKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVF 774
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN KF S GI H+FS TPQQNG+VERKN
Sbjct: 775 KELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKN 834
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE AR ML + + WAE +NTACYI NR+++RR T YE+WK KP + +FH
Sbjct: 835 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFH 894
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
G CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 895 ICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTP 954
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
+ + + E +V+D K+ E AE + +E + R RI HPKELI+
Sbjct: 955 ARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELII 1014
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N+V
Sbjct: 1015 GDPNRGVTTRSR----EIEIISNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEV 1070
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF P ARLE
Sbjct: 1071 WELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLE 1130
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IRLL+ + L+QMDVKSAFLNGY++EE YV QP GF D +PDHV++LKK+LYG
Sbjct: 1131 SIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYG 1190
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + + +
Sbjct: 1191 LKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLR 1250
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K ++KKF M ++ +TP
Sbjct: 1251 HFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPA 1310
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L K++A V Q LYR MIGSLLYLTASRPD ++V CAR+Q++P+ +HL VK
Sbjct: 1311 PTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVK 1370
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RIL+Y+ GT++ G+MY S+ L GYCD D+AG RKSTFG C +LG+N +SW SK+
Sbjct: 1371 RILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKK 1430
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HS
Sbjct: 1431 QNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHS 1490
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
R KHI++++H+IRD V V+ L+ VDT+ + ADI+ KAL
Sbjct: 1491 RTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKAL 1530
Score = 129 bits (324), Expect = 8e-28
Identities = 117/450 (26%), Positives = 193/450 (42%), Gaps = 68/450 (15%)
Query: 30 SFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTAEQKKLYAQHHKARAILLS 83
+F D+ W ++ G+E P +D EGK P + T E+ +L + KA L +
Sbjct: 3 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 62
Query: 84 AISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESFIMEPNESIEEMF 143
+ ++ I A +E LK +HEG KVK S+ L K+E+ M+ E I E
Sbjct: 63 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFH 122
Query: 144 SRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILK 203
+ L + T + V +++RSLP+ + VT+IE +D+ M ++ELI L+
Sbjct: 123 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 182
Query: 204 CHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESEEASEDSDEDE-----LTL 258
EL S+ + + K++A S +E EE D D DE + L
Sbjct: 183 TFELGLSDRTEKKSKNLAFVSN----------------DEGEEDEYDLDTDEGLTNAVVL 226
Query: 259 ISKRLNHIWKHKQSKYR--------GSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKS 310
+ K+ N + + + K + S +K S K + C C+ GH K+
Sbjct: 227 LGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKA 286
Query: 311 DCPKLKKDKRPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMTIVKDKEAESKEVPD 368
+CP K K +K L V D++ESE + DSD +V L
Sbjct: 287 ECPTHLK--------KQRKGLSVCRSDDTESEQESDSDRDVNAL---------------- 322
Query: 369 SDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKDFSAASKTPSE 428
+ + +SD ++E+ + EL + ++ K +L + +LKK +
Sbjct: 323 TGRFESAEDSSDTDSEI----TFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEA 378
Query: 429 HEKIISELKNDNHALVNSNSVLKNQIANLE 458
HE ISELK + L NS L+N +++
Sbjct: 379 HEDEISELKGEIGFL---NSKLENMTKSIK 405
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 855 bits (2210), Expect = 0.0
Identities = 426/882 (48%), Positives = 592/882 (66%), Gaps = 9/882 (1%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL S +E + H+R GH +R + ++ VRG+P LK +C CQ GK K+
Sbjct: 681 CLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 740
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
+ +TS LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K ++ VF
Sbjct: 741 QKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVF 800
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++Q EK C I R+RSDHG EFEN KF S GI H+FS TPQQNG+VERKN
Sbjct: 801 KELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKN 860
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQE R ML + + WAE +NTACYI NR+++RR T YE+WK KP + +FH
Sbjct: 861 RTLQEATRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFH 920
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 921 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTP 980
Query: 1028 SDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKS--RIIASHPKEL 1085
+ + + E +V+D K+ E AE + +E P+ +QP K RI PKEL
Sbjct: 981 ARKKDVEEDVRTSEDNVADTAKSAENAEKSDSTTDE--PNINQPDKSPFIRIQKMQPKEL 1038
Query: 1086 ILGNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKN 1145
I+G+ + V TRS E ++S VS IEPK++ EAL D+ WI AM+EE+ +F +N
Sbjct: 1039 IIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRN 1094
Query: 1146 DVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVAR 1205
+VW LV +P+ +VIGTKW+F+NK NE+G + RNKARLVA+GY+Q EG+D+ ETF PVAR
Sbjct: 1095 EVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVAR 1154
Query: 1206 LEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSL 1265
LE+IRLL+ + L+QMDVKSAFLNGY++EE YV QP GF D + DHV++LKK+L
Sbjct: 1155 LESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKAL 1214
Query: 1266 YGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSL 1325
YGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVD I+FG + +
Sbjct: 1215 YGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEM 1274
Query: 1326 CKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKT 1385
+ F MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K ++KKF M ++ +T
Sbjct: 1275 LRHFVPQMQSEFEMSLVGELHYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRT 1334
Query: 1386 PMHPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTA 1445
P L K++A V Q LYR MIGSLLYLTASRPD F+V +CAR+Q++P+ +HL
Sbjct: 1335 PAPTHLKLSKDEAGTSVDQNLYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQ 1394
Query: 1446 VKRILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWAS 1505
VKRIL+Y+ GT++ G+MY S+ L GYCD D+AG RK T G C +LG+NL+SW S
Sbjct: 1395 VKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKCTSGGCFYLGTNLISWFS 1454
Query: 1506 KRQSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPIL 1565
K+Q+ + LSTA+AEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+
Sbjct: 1455 KKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQ 1514
Query: 1566 HSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY-KAL 1606
H+R KHI++++H+IRD V ++ L+ VDT+ + ADI+ KAL
Sbjct: 1515 HNRTKHIDIRHHYIRDLVDDKIITLEHVDTEEQVADIFTKAL 1556
Score = 145 bits (366), Expect = 1e-32
Identities = 127/469 (27%), Positives = 202/469 (42%), Gaps = 71/469 (15%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDAEGKKI----PRSEMTA 65
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D EGK P + T
Sbjct: 12 RPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTK 71
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFA-NGIFESLKMSHEGNKKVKESKTLSL 124
E+ +L + KA L + + ++ I A + E LK +HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLL 131
Query: 125 IQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSI 184
K+E+ M+ E I + + L + T + V +++RSLP+ + VT+I
Sbjct: 132 ATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAI 191
Query: 185 ELTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEES 244
E +D+ M ++ELI L+ EL S+ + + K++A S +E
Sbjct: 192 EEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSN----------------DEG 235
Query: 245 EEASEDSDEDE-----LTLISKRLNHIWKHKQSKYR--------GSGKAKGKSESSGQKK 291
EE D D DE + L+ K+ N + + + K + S +K
Sbjct: 236 EEDEYDLDTDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKP 295
Query: 292 SSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMV-TFDESESE-DVDSDGEV 349
S K + C C+ GH K++CP K K +K L V D++ESE + DSD +V
Sbjct: 296 SHSKGIQCHGCEGYGHIKAECPTHLK--------KQRKGLSVCRSDDTESEQESDSDRDV 347
Query: 350 QGLMTIVKDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLL 409
L E D +S D F + S K + K +L
Sbjct: 348 NAL-----------------TGRFESDEDSSDIEITFDELAISYRKLCI-----KSEKIL 385
Query: 410 TKHKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLE 458
+ +LKK + HE+ ISELK + L NS L+N +++
Sbjct: 386 QQEAQLKKVIANLEAEKEAHEEEISELKGEVGFL---NSKLENMTKSIK 431
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 855 bits (2209), Expect = 0.0
Identities = 449/938 (47%), Positives = 609/938 (64%), Gaps = 32/938 (3%)
Query: 694 QGCKSDRWLCSI*QQEEEQHL*IRLSELEAQNVKCLLSVNEEQWV*HRRLGHASMRKISQ 753
Q DR + + + E ++ + + +NV L++ W+ HRRL H M ++S+
Sbjct: 170 QRMTGDRAMFTTFEVEGKEQEKVTFGDNSKRNVIGLVAKTSFGWLWHRRLAHVGMNQLSK 229
Query: 754 LSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTE 813
LSK +LV GL +KF D LC ACQ K K+++STSRPLELLH+DLFGP +
Sbjct: 230 LSKRDLVVGLKDVKFEKDKLCSACQASKQVACSHPTKSIMSTSRPLELLHMDLFGPTTYK 289
Query: 814 SIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVFSTFIAQVQNEKACRIVRVRSDHGGEF 873
SIGG + +VIVDDYS +TWV FL K +F F + QNE +C +V++RSD+G +F
Sbjct: 290 SIGGNSHCLVIVDDYSCYTWVFFLHDKCIVAELFKKFAKRAQNEFSCTLVKIRSDNGSKF 349
Query: 874 ENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQEIGMAKHFWAEVVN 933
+N E D I H+ S +PQQNGVVERKNRTL EMARTML E G++ FWAE +N
Sbjct: 350 KNTNIEDYCDDLSIKHELSATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAIN 409
Query: 934 TACYIQNRISVRRILNKTPYELWKNIKPNISYFHSFGCVCYVLNTKDRLHKFDAKSSKCL 993
TAC+ NR+ + R+L KT YEL KPN++YF FGC CY+ RL KF+++ +
Sbjct: 410 TACHATNRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGF 469
Query: 994 LLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSK----------LVEKFADLSIS 1043
LLGY+ SK +R YN + +EE+ V+FD+ S + L+ ++SI
Sbjct: 470 LLGYASNSKAYRVYNKNKGIVEETADVQFDETNGSQEGHENLDDVGDEGLMRAMKNMSIG 529
Query: 1044 ------VSDKGKALEEAEPE----------EDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
V DK + EP E + E+A PR + + HP + +L
Sbjct: 530 DVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEKEKAQDPPMPPRIYTALSKDHPIDQVL 589
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
G+ + V+TRS ++ VS +EPK +DEAL D DW+ A+ EE+N F++N V
Sbjct: 590 GDISKGVQTRSPVA----SICEHYSFVSCLEPKHVDEALYDPDWMNAIHEELNNFARNKV 645
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
W+LV++P+ +VIGTKWVFRNK +E VVRNKARLVA+G++Q E +D+ ETF PVARLE
Sbjct: 646 WTLVERPRDHNVIGTKWVFRNKQDENRLVVRNKARLVAQGFTQVEDLDFGETFGPVARLE 705
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
AIR+L++F+ +I L QMDVKSAFLNG I+E V+V QPPGF+D K P+HV+KL K+LYG
Sbjct: 706 AIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFDDPKYPNHVYKLSKALYG 765
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYERL FLL +F GKVDTTLF K DD + QIYVD IIFGS N+ CK
Sbjct: 766 LKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCK 825
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
EF MM EFEMSM+ EL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM
Sbjct: 826 EFGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPM 885
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
L+ ++ V KLYR MIGSLLYLTASRPD +FSV + ARFQ+ P+E HL AVK
Sbjct: 886 ATNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVK 945
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RILRYLK ++ + L Y K +++KL GY D DYAG + RKST G+CQ LG +LVSW+SK+
Sbjct: 946 RILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKK 1005
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQI--LESNIPIYCDNTAAISLSKNPIL 1565
Q+++ LSTA+AEYISA C Q+LWMK L DY I E+ P+ C+N + I ++ NP+
Sbjct: 1006 QNSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTPLLCNNDSTIKIANNPVQ 1065
Query: 1566 HSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
H R KHI++++HF+ D+V K +++ + T+ + ADI+
Sbjct: 1066 HFRTKHIDIRHHFLTDHVAKCDIVISHIRTEDQLADIF 1103
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 843 bits (2178), Expect = 0.0
Identities = 444/916 (48%), Positives = 586/916 (63%), Gaps = 45/916 (4%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL++ W+ HRRL H M+ + +L K V GL ++F D C ACQ GK +
Sbjct: 113 CLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFKKDRPCVACQAGKQVRGSH 172
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
KNV++TSRPLE+LH+DLFGPV SIGG +YG+VIVDD+SR+TWV FL K E+
Sbjct: 173 HTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTL 232
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
++ + QNE ++ ++RSD+G EF+N + E GI H+FS P TPQQNGVVERKN
Sbjct: 233 KRYLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHEFSAPYTPQQNGVVERKN 292
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTL +MARTML E + FW+E VNTAC+ NR+ + R+L T YEL KPN+SYF
Sbjct: 293 RTLMDMARTMLGEFKTPERFWSEAVNTACHSINRVYLHRLLKNTSYELLTGNKPNVSYFR 352
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDD--- 1024
FG CY+L K R KF K+ + LLGY +K +R +N + +E S V FD+
Sbjct: 353 VFGSKCYILVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNG 412
Query: 1025 -------KLDSDQSKLVEKFADLSISVSD--KGKALEEAEPE---------EDD------ 1060
LD + V A ++++ D + LE+ +P +DD
Sbjct: 413 SLREQVVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTTMVHPPTQDDEQAPQV 472
Query: 1061 -------------PEEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETL 1107
EE P + ++ I +HP ILG+ + V TRS
Sbjct: 473 GAHDQGGAQDVQVEEEEAPQAPPTQVRATIQRNHPVNQILGDISKGVTTRSRL----VNF 528
Query: 1108 LSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFR 1167
VS IEP ++E L D DW+LAM+EE+N F +N+VW+LV +P+ +V+GTKWVFR
Sbjct: 529 CEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVVGTKWVFR 587
Query: 1168 NKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMD 1227
NK +E G V RNKARLVAKGY+Q G+D+ ETF PVARL++IR+ ++++ +H+ L+QMD
Sbjct: 588 NKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLKSIRIWLAYAAHHSFRLYQMD 647
Query: 1228 VKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENE 1287
VKSAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L FL+ N
Sbjct: 648 VKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALYGLKQAPRAWYECLRDFLIANA 707
Query: 1288 FVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKY 1347
F GK D TLF KT D+ + QIYVD IIFGS NQ+ C+EFS++M +FEMSMMGEL Y
Sbjct: 708 FKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSY 767
Query: 1348 FLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLY 1407
FLG QV Q +GT+I Q+KYT++L+K+F M ++ AKTPM + V QK Y
Sbjct: 768 FLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAY 827
Query: 1408 RCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS 1467
R IGSLLYL ASRPD + SV +CARFQSDPRE HL AVKRILRYL T G+ Y K S
Sbjct: 828 RSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGS 887
Query: 1468 EYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICS 1527
+ L GY D DYA + RKST CQFLG +LVSW SK+Q+++ LSTA+AEY++ C
Sbjct: 888 TFDLIGYSDSDYARCKVDRKSTSRMCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCC 947
Query: 1528 TQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGV 1587
Q+LWM+ L D+ S +P+ CDN +AI +++NP+ HSR KHI++++HF+RD+ QKGV
Sbjct: 948 AQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGV 1007
Query: 1588 LLLKFVDTDHKWADIY 1603
+ + V +++ ADI+
Sbjct: 1008 IEVFHVSSENHLADIF 1023
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 842 bits (2176), Expect = 0.0
Identities = 427/897 (47%), Positives = 591/897 (65%), Gaps = 23/897 (2%)
Query: 728 CLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPF 787
CL + E+ + H+RLGH + R +S+L +VRG+P LK +C AC +GK +V
Sbjct: 728 CLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQH 787
Query: 788 KAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVF 847
K + T++ L+L+H+DL GP++TESI GKRY V+VDD+SR+ WV+F+ K E+ + F
Sbjct: 788 KRVEGIQTTQVLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSF 847
Query: 848 STFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKN 907
Q++NEK I ++RSD GGEF N+ F S +S GI H +S PRTPQ NGVVERKN
Sbjct: 848 KILALQLKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERKN 907
Query: 908 RTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFH 967
RTLQEMAR M+ G+ + FWAE ++TACY+ NR+ VR +KTPYE+WK KPN+SYF
Sbjct: 908 RTLQEMARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYFR 967
Query: 968 SFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLD 1027
FGCVCY++N KD+L KFD++S + LGY+ S +R +N IEES++V FDD
Sbjct: 968 VFGCVCYIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDDGSM 1027
Query: 1028 SDQSKLVEKFADLSISVSDK-GKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELI 1086
+ +V + S+S+ G+ + + + D ++G + +++ H + I
Sbjct: 1028 PELQIIVRNRNEPQTSISNNHGEERNDNQFDNGDINKSGEESDEEVPPAQVHRDHASKDI 1087
Query: 1087 LGNKD-------------------EPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQ 1127
+G+ + R ++F EE + S VS++EPK++ EAL+
Sbjct: 1088 IGDPSGERVTRGVKQDYRQLAGIKQKHRVMASFACFEEIMFSC--FVSIVEPKNVKEALE 1145
Query: 1128 DKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKG 1187
D WILAMEEE+ EFS++ VW LV +P V+VIGTKW+F+NK +E G++ RNKARLVA+G
Sbjct: 1146 DHFWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQG 1205
Query: 1188 YSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPP 1247
Y+Q EG+D+ ETF PVARLE IR L+ + LHQMDVK AFLNG I EEVYV QP
Sbjct: 1206 YTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPK 1265
Query: 1248 GFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDIL 1307
GFE+ + P++V+KLKK+LYGLKQAPRAWYERL++FL+ + RG VD TLF K I+
Sbjct: 1266 GFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHGII 1325
Query: 1308 IVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKY 1367
I+QIYVD I+FG + L K F K M EF MSM+GELKYFLG+Q++QT EG I QS Y
Sbjct: 1326 IIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQSTY 1385
Query: 1368 TKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFS 1427
+ L+K+F M S A TPM T L K++ KV +KLYR MIGSLLYLTA+RPD S
Sbjct: 1386 AQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRPDLCLS 1445
Query: 1428 VHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RK 1487
V LCAR+QS+P+ +HL AVKRI++Y+ GT N GL Y + + L GYCD D+ G+ R+
Sbjct: 1446 VGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVGYCDADWGGNLDDRR 1505
Query: 1488 STFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQLEDY-QILESN 1546
ST G FLGSNL+SW SK+Q+ + LS+ ++EYI+ C TQ+LWM+ DY
Sbjct: 1506 STTGGVFFLGSNLISWHSKKQNCVSLSSTQSEYIALGSCCTQLLWMRQMGLDYGMTFPDP 1565
Query: 1547 IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
+ + CDN +AI++SKNP+ HS KHI +++HF+R+ V++ + ++ V T+ + DI+
Sbjct: 1566 LLVKCDNESAIAISKNPVQHSVTKHIAIRHHFVRELVEEKQITVEHVPTEIQLVDIF 1622
Score = 124 bits (312), Expect = 2e-26
Identities = 93/396 (23%), Positives = 190/396 (47%), Gaps = 40/396 (10%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPV--DAEGKKIPRSE---MTAE 66
K M + + +WK ++ + G + W G++ PV G+ + ++E AE
Sbjct: 12 KAIMLEKGNYGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQWTDAE 71
Query: 67 QKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQ 126
+ K A + +A +++ ++++ ++++I + E A ++ L ++EG VK S+ L
Sbjct: 72 EAKATA-NSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLAS 130
Query: 127 KYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIEL 186
++E+ M+ +E+IEE + + + L K Y K V +++R LP + T++
Sbjct: 131 QFENLTMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGT 190
Query: 187 TRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESEE 246
+ D + + EE++ +L+ +EL+ + + K +AL A+ +E E +E
Sbjct: 191 SLDTDTIDFEEVVGMLQAYELEITSGKGGYSKGVAL-------------AVSSEKNEIQE 237
Query: 247 ASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESG 306
+DS S+ + + K ++ +GS + + + K+S E+ C EC+ G
Sbjct: 238 L-KDSMSMMAKNFSRAMKRVEKRGFARNQGSDRDRDRDRDRNSKRS---EIQCHECQGYG 293
Query: 307 HYKSDCPKLKK------DKRPKKHFK--------TKKSLMVTFDESESEDVDSDGEVQGL 352
H K++CP LK+ + R H K + +S+S+D DS+ +V+G
Sbjct: 294 HIKAECPSLKRKDLKCSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGF 353
Query: 353 MTIVKDKEAESKEVPDSDS---ASEEDPNSDDENEV 385
++ V E ++ SDS +E+ ++DDE++V
Sbjct: 354 VSFVGIIEDDNVSSDSSDSEVGCEKEEISADDESDV 389
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 837 bits (2161), Expect = 0.0
Identities = 439/908 (48%), Positives = 584/908 (63%), Gaps = 44/908 (4%)
Query: 722 EAQNVKCLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGK 781
EA CL++ W+ HRRL H M ++S+LSK +LV GL +KF D LC ACQ GK
Sbjct: 674 EANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGK 733
Query: 782 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKD 841
K+++STSRPLELLH++ FGP +SIGG + +VIVDDYSR+TW+ FL K
Sbjct: 734 QVACSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKS 793
Query: 842 ESHSVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 901
+F F + QNE C +V++RSD+G +F+N E D GI H+ S +PQQNG
Sbjct: 794 IVAELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNG 853
Query: 902 VVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKP 961
VVE KNRTL EMARTML E G++ FWAE +NTAC+ NR+ + R+L KT YEL KP
Sbjct: 854 VVEMKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKP 913
Query: 962 NISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVR 1021
N++YF FGC CY+ RL KF+++ + LLGY+ SK +R YN + +EE+ V+
Sbjct: 914 NVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQ 973
Query: 1022 FDDKLDSDQSK----------LVEKFADLSIS------VSDKGKALEEAEPE-------- 1057
FD+ S + L+ ++SI V DK + EP
Sbjct: 974 FDETNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSATPSQA 1033
Query: 1058 --EDDPEEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVS 1115
E + E+A PR + + HP + +LG+ + V+TRS ++ VS
Sbjct: 1034 QVEVEEEKAQDLPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVA----SICEHYSFVS 1089
Query: 1116 LIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGD 1175
+EPK +DEAL D DWI AM +E+N F++N VW+LV++ + +VIGTKWVFRNK +E G
Sbjct: 1090 CLEPKHVDEALCDPDWINAMHKELNNFARNKVWTLVERLRDHNVIGTKWVFRNKQDENGL 1149
Query: 1176 VVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1235
VVRNKAR VA+G++Q EG+D+ ETF PV RLEAI +L++F+ NI L QMDVKSAFLNG
Sbjct: 1150 VVRNKARFVAQGFTQVEGLDFGETFAPVTRLEAICILLAFASCFNIKLFQMDVKSAFLNG 1209
Query: 1236 YISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1295
I+E V+V QPPGFED K P+HV+KL K+LYGLKQAPRAWYERL FLL +F GKVDT
Sbjct: 1210 EIAELVFVEQPPGFEDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDT 1269
Query: 1296 TLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQ 1355
TLF K DD + QIYVD IIFG N+ CKEF MM EFEMSM+GEL +F G+Q+ Q
Sbjct: 1270 TLFTKIIGDDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQIKQ 1329
Query: 1356 TPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLL 1415
+GT F + ++ KTPM L+ ++ V KLYR MIGSLL
Sbjct: 1330 LKDGT--------------FGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLL 1375
Query: 1416 YLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYC 1475
YLTASRPD +FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K +++KL GY
Sbjct: 1376 YLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYS 1435
Query: 1476 DVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKH 1535
D DYAG + RKST G+CQ LG +LVSW+SK+Q+ + L A+AEY+SA C Q+LWMK
Sbjct: 1436 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLWMKQ 1495
Query: 1536 QLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDT 1595
L DY I + P+ C+N +AI ++ NP+ HSR KHI++++HF+RD+V K +++ + T
Sbjct: 1496 ILLDYGISFTKTPLLCENDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRT 1555
Query: 1596 DHKWADIY 1603
+ + ADI+
Sbjct: 1556 EDQLADIF 1563
Score = 141 bits (355), Expect = 2e-31
Identities = 120/451 (26%), Positives = 214/451 (46%), Gaps = 56/451 (12%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQKKLY 71
K PMF+G + WK ++ + +W I+ G+ P +E+ KL
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT------GTPLTEIDHRNLKLN 63
Query: 72 AQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESF 131
AQ A +L +++S EE+ ++++LE A I+ L HE + K++K L +YE+F
Sbjct: 64 AQ---AMNVLFNSLSQEEFDRVSNLETAYEIWNKLAEIHESTSEYKDAKLHFLKIQYETF 120
Query: 132 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIELTRDVE 191
M P+ES+ +M+ R ++V ++ L +YT + +++R+LPE + LVT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTNLEVAQKMLRALPEKYETLVTML-INSDMS 179
Query: 192 RMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEES-----EE 246
RM+ L+ ++ ++M L+KK + E + S+K ALQAE E+ E
Sbjct: 180 RMTPASLLG-----KINTNDMYKLKKKEME-----EASPSKKCIALQAEVEDKSKSKVNE 229
Query: 247 ASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESG 306
++D E+E+ L+++R N + ++ + RGS + ++ + S+++ CFEC +S
Sbjct: 230 VNKDL-EEEIVLLARRFNDLLGRRKERGRGSNSNRRRNRRPNKTLSNLR---CFEC-DSN 284
Query: 307 HYKSDCPKLKKDKRPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMTIVKDKEAESKEV 366
S +++ K KK +V E+ S + ++ SK
Sbjct: 285 EESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSL----------FAPLCLMAKSPSKVT 334
Query: 367 PDSDSASEEDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKDFSAASKTP 426
SDS S++D + +E+ + F E HA S+ + K K LKKD ++
Sbjct: 335 SLSDSESDDDCDDVSYDELVSMF---EELHAYSE------KEIIKFKTLKKDHASL---- 381
Query: 427 SEHEKIISELKNDNHALVNSNSVLKNQIANL 457
E + ELK + L S+ LK NL
Sbjct: 382 ---EVLYEELKTSHERLTISHEKLKEAHDNL 409
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 834 bits (2155), Expect = 0.0
Identities = 438/926 (47%), Positives = 592/926 (63%), Gaps = 40/926 (4%)
Query: 727 KCLL-SVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKV 785
+CL+ S N + + HRRLGH +S++S ++L+RGLP LK D +C C+ GK T
Sbjct: 873 RCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGKMTSS 932
Query: 786 PFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHS 845
K +V T P +LLH+D GP + +S+GGK Y +V+VDD+SR++WV FL K+E+
Sbjct: 933 SHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFG 992
Query: 846 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 905
F + + E + +RSD+G EF+N FES DS G+ H FS P PQQNGVVER
Sbjct: 993 FFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVER 1052
Query: 906 KNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISY 965
KNRTL EMARTML E + FW E ++ AC+I NR+ +R IL+KTPYEL +P +S+
Sbjct: 1053 KNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSH 1112
Query: 966 FHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 1025
FGC C+VL + + L KF+++S + LGY+ S+ +R Y I E+ V FD+
Sbjct: 1113 LRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEA 1171
Query: 1026 L---------------------DSDQSKLVEKFADLSISVSDKGKALEEAEPEEDDP--- 1061
D D + D + V + G P D P
Sbjct: 1172 SPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSP-STTSPSGDAPTTS 1230
Query: 1062 ----EEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVSLI 1117
EE S P I HP + ++G E V ++ L V+
Sbjct: 1231 SSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE------LVNSAFVASF 1284
Query: 1118 EPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 1177
EPK++ AL D++W+ AM EE+ F +N VWSLV+ P +VIGTKWVF+NKL E G +V
Sbjct: 1285 EPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIV 1344
Query: 1178 RNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYI 1237
RNKARLVA+G++Q EG+D+ ETF PVARLEAIR+L++F+ + L QMDVKSAFLNG I
Sbjct: 1345 RNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVI 1404
Query: 1238 SEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTL 1297
EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F G VD TL
Sbjct: 1405 EEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTL 1464
Query: 1298 FCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTP 1357
F D L+VQIYVD IIFG ++ +L +FS +M EFEMSMMGEL +FLG+Q+ QT
Sbjct: 1465 FTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTK 1524
Query: 1358 EGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYL 1417
EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR MIGSLLYL
Sbjct: 1525 EGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYL 1584
Query: 1418 TASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDV 1477
TASRPD FSV LCARFQ+ PR +H AVKRI RY+K T G+ Y +S + + D
Sbjct: 1585 TASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDA 1644
Query: 1478 DYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQL 1537
D+AG + RKST G C FLG++LVSW+S++QS++ STA+AEY++AA +Q+LWM L
Sbjct: 1645 DFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTL 1704
Query: 1538 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDH 1597
+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++L+FV+++
Sbjct: 1705 KDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEK 1764
Query: 1598 KWADIY-KALSRG*I*FHYEKSEYGL 1622
+ ADI+ K L R F + +SE G+
Sbjct: 1765 QLADIFTKPLDRS--RFEFLRSELGV 1788
Score = 146 bits (368), Expect = 6e-33
Identities = 122/462 (26%), Positives = 206/462 (44%), Gaps = 73/462 (15%)
Query: 6 KDGYNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTA 65
++ Y+AKP +FDG F WK R+E++ ++W+ + Y P DA+ +T
Sbjct: 2 EEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITP 53
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
+++AR ++ IS E+ ++ + A+ ++ +L HEGN ++ +
Sbjct: 54 ANMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFH 113
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPES-WMPLVTSI 184
++Y+ F M P ESI+ F RF +++ +R + K ++ D+ ++ L W VTSI
Sbjct: 114 KEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSI 173
Query: 185 ELTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKA-------L 237
+ + +++++L S LK HE+ + L K S+AL + + S A L
Sbjct: 174 TESAPLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSL 232
Query: 238 QAEAEESEEASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEV 297
A +EE E ED+L L +++ + +K+ + + RG + +
Sbjct: 233 AALHSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPF 277
Query: 298 TCFECKESGHYKSDCPKLKK--DKRPKK----HFKTKKSLM--------VTFDESESEDV 343
CFEC E H + +CPKLKK DK KK K KK LM +E + D+
Sbjct: 278 VCFECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDI 337
Query: 344 DSDGEVQ--------GLMTIV---------------KDKEAESKEVPDSDSASEE----D 376
DSD + Q G+ + KD +E EV D S + D
Sbjct: 338 DSDDDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCD 397
Query: 377 PNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKD 418
+ D + V S + H + +I DKY S K +KLK +
Sbjct: 398 DSCSDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLKSE 439
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 833 bits (2151), Expect = 0.0
Identities = 437/926 (47%), Positives = 592/926 (63%), Gaps = 40/926 (4%)
Query: 727 KCLL-SVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKV 785
+CL+ S N + + HRRLGH +S++S ++L+RGLP LK D +C C+ GK T
Sbjct: 873 RCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSS 932
Query: 786 PFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHS 845
K +V T P +LLH+D GP + +S+GGK Y +V+VDD+SR++WV FL K+E+
Sbjct: 933 SHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFG 992
Query: 846 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 905
F + + E + +RSD+G EF+N FES DS G+ H FS P PQQNGVVER
Sbjct: 993 FFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVER 1052
Query: 906 KNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISY 965
KNRTL EMARTML E + FW E ++ AC+I NR+ +R IL+KTPYEL +P +S+
Sbjct: 1053 KNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSH 1112
Query: 966 FHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 1025
FGC C+VL + + L KF+++S + LGY+ S+ +R Y I E+ V FD+
Sbjct: 1113 LRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEA 1171
Query: 1026 L---------------------DSDQSKLVEKFADLSISVSDKGKALEEAEPEEDDP--- 1061
D D + D + V + G P D P
Sbjct: 1172 SPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSP-STTSPSGDAPTTS 1230
Query: 1062 ----EEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVSLI 1117
EE S P I HP + ++G E V ++ L V+
Sbjct: 1231 SSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE------LVNSAFVASF 1284
Query: 1118 EPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 1177
EPK++ AL D++W+ AM EE+ F +N VWSLV+ P +VIGTKWVF+NKL E G +V
Sbjct: 1285 EPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIV 1344
Query: 1178 RNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYI 1237
RNKARLVA+G++Q EG+D+ ETF PVARLEAIR+L++F+ + L QMDVKSAFLNG I
Sbjct: 1345 RNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVI 1404
Query: 1238 SEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTL 1297
EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F G VD TL
Sbjct: 1405 EEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTL 1464
Query: 1298 FCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTP 1357
F D L+VQIYVD IIFG ++ +L +FS +M EFEMSMMGEL +FLG+Q+ QT
Sbjct: 1465 FTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTK 1524
Query: 1358 EGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYL 1417
EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR MIGSLLYL
Sbjct: 1525 EGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYL 1584
Query: 1418 TASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDV 1477
TASRPD FSV LCARFQ+ PR +H AVKR+ RY+K T G+ Y +S + + D
Sbjct: 1585 TASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDA 1644
Query: 1478 DYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQL 1537
D+AG + RKST G C FLG++LVSW+S++QS++ STA+AEY++AA +Q+LWM L
Sbjct: 1645 DFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTL 1704
Query: 1538 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDH 1597
+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++L+FV+++
Sbjct: 1705 KDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEK 1764
Query: 1598 KWADIY-KALSRG*I*FHYEKSEYGL 1622
+ ADI+ K L R F + +SE G+
Sbjct: 1765 QLADIFTKPLDRS--RFEFLRSELGV 1788
Score = 146 bits (368), Expect = 6e-33
Identities = 122/462 (26%), Positives = 206/462 (44%), Gaps = 73/462 (15%)
Query: 6 KDGYNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTA 65
++ Y+AKP +FDG F WK R+E++ ++W+ + Y P DA+ +T
Sbjct: 2 EEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITP 53
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
+++AR ++ IS E+ ++ + A+ ++ +L HEGN ++ +
Sbjct: 54 ANMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFH 113
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPES-WMPLVTSI 184
++Y+ F M P ESI+ F RF +++ +R + K ++ D+ ++ L W VTSI
Sbjct: 114 KEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSI 173
Query: 185 ELTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKA-------L 237
+ + +++++L S LK HE+ + L K S+AL + + S A L
Sbjct: 174 TESAPLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSL 232
Query: 238 QAEAEESEEASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEV 297
A +EE E ED+L L +++ + +K+ + + RG + +
Sbjct: 233 AALHSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPF 277
Query: 298 TCFECKESGHYKSDCPKLKK--DKRPKK----HFKTKKSLM--------VTFDESESEDV 343
CFEC E H + +CPKLKK DK KK K KK LM +E + D+
Sbjct: 278 VCFECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDI 337
Query: 344 DSDGEVQ--------GLMTIV---------------KDKEAESKEVPDSDSASEE----D 376
DSD + Q G+ + KD +E EV D S + D
Sbjct: 338 DSDDDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCD 397
Query: 377 PNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKD 418
+ D + V S + H + +I DKY S K +KLK +
Sbjct: 398 DSCSDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLKSE 439
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 833 bits (2151), Expect = 0.0
Identities = 437/926 (47%), Positives = 592/926 (63%), Gaps = 40/926 (4%)
Query: 727 KCLL-SVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKV 785
+CL+ S N + + HRRLGH +S++S ++L+RGLP LK D +C C+ GK T
Sbjct: 955 RCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSS 1014
Query: 786 PFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHS 845
K +V T P +LLH+D GP + +S+GGK Y +V+VDD+SR++WV FL K+E+
Sbjct: 1015 SHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFG 1074
Query: 846 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 905
F + + E + +RSD+G EF+N FES DS G+ H FS P PQQNGVVER
Sbjct: 1075 FFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVER 1134
Query: 906 KNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISY 965
KNRTL EMARTML E + FW E ++ AC+I NR+ +R IL+KTPYEL +P +S+
Sbjct: 1135 KNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSH 1194
Query: 966 FHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 1025
FGC C+VL + + L KF+++S + LGY+ S+ +R Y I E+ V FD+
Sbjct: 1195 LRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEA 1253
Query: 1026 L---------------------DSDQSKLVEKFADLSISVSDKGKALEEAEPEEDDP--- 1061
D D + D + V + G P D P
Sbjct: 1254 SPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSP-STTSPSGDAPTTS 1312
Query: 1062 ----EEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVSLI 1117
EE S P I HP + ++G E V ++ L V+
Sbjct: 1313 SSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE------LVNSAFVASF 1366
Query: 1118 EPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 1177
EPK++ AL D++W+ AM EE+ F +N VWSLV+ P +VIGTKWVF+NKL E G +V
Sbjct: 1367 EPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIV 1426
Query: 1178 RNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYI 1237
RNKARLVA+G++Q EG+D+ ETF PVARLEAIR+L++F+ + L QMDVKSAFLNG I
Sbjct: 1427 RNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVI 1486
Query: 1238 SEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTL 1297
EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F G VD TL
Sbjct: 1487 EEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTL 1546
Query: 1298 FCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTP 1357
F D L+VQIYVD IIFG ++ +L +FS +M EFEMSMMGEL +FLG+Q+ QT
Sbjct: 1547 FTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTK 1606
Query: 1358 EGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYL 1417
EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR MIGSLLYL
Sbjct: 1607 EGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYL 1666
Query: 1418 TASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDV 1477
TASRPD FSV LCARFQ+ PR +H AVKR+ RY+K T G+ Y +S + + D
Sbjct: 1667 TASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDA 1726
Query: 1478 DYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQL 1537
D+AG + RKST G C FLG++LVSW+S++QS++ STA+AEY++AA +Q+LWM L
Sbjct: 1727 DFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTL 1786
Query: 1538 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDH 1597
+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++L+FV+++
Sbjct: 1787 KDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEK 1846
Query: 1598 KWADIY-KALSRG*I*FHYEKSEYGL 1622
+ ADI+ K L R F + +SE G+
Sbjct: 1847 QLADIFTKPLDRS--RFEFLRSELGV 1870
Score = 146 bits (368), Expect = 6e-33
Identities = 122/462 (26%), Positives = 206/462 (44%), Gaps = 73/462 (15%)
Query: 6 KDGYNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTA 65
++ Y+AKP +FDG F WK R+E++ ++W+ + Y P DA+ +T
Sbjct: 2 EEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITP 53
Query: 66 EQKKLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLI 125
+++AR ++ IS E+ ++ + A+ ++ +L HEGN ++ +
Sbjct: 54 ANMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFH 113
Query: 126 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPES-WMPLVTSI 184
++Y+ F M P ESI+ F RF +++ +R + K ++ D+ ++ L W VTSI
Sbjct: 114 KEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSI 173
Query: 185 ELTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKA-------L 237
+ + +++++L S LK HE+ + L K S+AL + + S A L
Sbjct: 174 TESAPLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSL 232
Query: 238 QAEAEESEEASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEV 297
A +EE E ED+L L +++ + +K+ + + RG + +
Sbjct: 233 AALHSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPF 277
Query: 298 TCFECKESGHYKSDCPKLKK--DKRPKK----HFKTKKSLM--------VTFDESESEDV 343
CFEC E H + +CPKLKK DK KK K KK LM +E + D+
Sbjct: 278 VCFECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDI 337
Query: 344 DSDGEVQ--------GLMTIV---------------KDKEAESKEVPDSDSASEE----D 376
DSD + Q G+ + KD +E EV D S + D
Sbjct: 338 DSDDDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCD 397
Query: 377 PNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKD 418
+ D + V S + H + +I DKY S K +KLK +
Sbjct: 398 DSCSDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLKSE 439
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 832 bits (2150), Expect = 0.0
Identities = 435/908 (47%), Positives = 583/908 (63%), Gaps = 46/908 (5%)
Query: 722 EAQNVKCLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGK 781
EA CL++ W+ HRRL H M ++S+ SK +LV GL +KF D LC ACQ GK
Sbjct: 665 EANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGK 724
Query: 782 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKD 841
K+++STS+PLELLH+DLF P +SIGG + +VIVDDYSR+TWV FL K
Sbjct: 725 QVACSHPTKSIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKS 784
Query: 842 ESHSVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 901
+F F + QNE +C +V++RS+ G EF+N E D GI H+ +PQQNG
Sbjct: 785 IVADLFKKFAKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNG 844
Query: 902 VVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKP 961
VVERKNRTL EMARTML E G++ FWAE +NTAC+ NR+ + R+L KT YE+ KP
Sbjct: 845 VVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKP 904
Query: 962 NISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVR 1021
NI+YF FGC CY+ RL KF+++ + LLGY+ +SK +R YN + +EE+ V+
Sbjct: 905 NIAYFRVFGCKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQ 964
Query: 1022 FDDKLDSDQSK----------LVEKFADLSIS------VSDKGKALEEAEPE-------- 1057
FD+ S + L+ ++SI V DK + EP
Sbjct: 965 FDETNGSQEGHENLDDVGDEGLMRVMKNMSIGDVKPIEVEDKPSTSTQDEPSTSAMPSQA 1024
Query: 1058 --EDDPEEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVS 1115
E + E+A PR + + HP + +LG+ + V+TRS ++ VS
Sbjct: 1025 QVEVEEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVT----SICEHYSFVS 1080
Query: 1116 LIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGD 1175
+E K +DEAL D DW+ AM EE+ F++N VW+LV++P+ +VIGTKWVFRNK +E G
Sbjct: 1081 CLERKHVDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGL 1140
Query: 1176 VVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1235
VVRNKARLVA+G++Q EG+D+ ETF PVARLEAI +L++F+ +I L QMDVKSAFLN
Sbjct: 1141 VVRNKARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVKSAFLN- 1199
Query: 1236 YISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1295
D K P+HV+KL K+LYGL+QAPRAWYERL FLL +F GKVD
Sbjct: 1200 ---------------DTKYPNHVYKLSKALYGLRQAPRAWYERLRDFLLSKDFKIGKVDI 1244
Query: 1296 TLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQ 1355
TLF K DD + QIYVD IIFGS N+ CKEF MM EFEMSM+GEL +FLG+Q+ Q
Sbjct: 1245 TLFTKIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQ 1304
Query: 1356 TPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLL 1415
GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLYR MIGSLL
Sbjct: 1305 LKNGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLL 1364
Query: 1416 YLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYC 1475
YLT SRPD +FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K +++KL GY
Sbjct: 1365 YLTVSRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYS 1424
Query: 1476 DVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKH 1535
D DYAG + RKST +CQ LG +LVSW+SK+Q+++ LSTA+ EY+SA C Q+LWMK
Sbjct: 1425 DPDYAGCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQ 1484
Query: 1536 QLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDT 1595
L DY I + P+ CDN AI ++ NP+ HSR KHI++++HF+RD+V K +++ + T
Sbjct: 1485 TLLDYGISFTKTPLLCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRT 1544
Query: 1596 DHKWADIY 1603
+ + ADI+
Sbjct: 1545 EDQLADIF 1552
Score = 95.5 bits (236), Expect = 1e-17
Identities = 55/201 (27%), Positives = 106/201 (52%), Gaps = 10/201 (4%)
Query: 9 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQK 68
+ K PMF+G + WK ++ + +W I+ G+ P E+
Sbjct: 7 HEGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT------GTPLMEIDHRNL 60
Query: 69 KLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKY 128
+L AQ A L +++S EE+ ++++LE A I+ L HEG + K++K L +Y
Sbjct: 61 QLNAQAMNA---LFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQY 117
Query: 129 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIELTR 188
E+F M P+ES+ +M+ R ++V ++ L +YT + +++R+LPE + LVT + +
Sbjct: 118 ETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML-INS 176
Query: 189 DVERMSLEELISILKCHELKR 209
D+ RM+ L+ + +++++
Sbjct: 177 DMSRMTPASLLGKINTNDMRK 197
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 830 bits (2143), Expect = 0.0
Identities = 437/926 (47%), Positives = 591/926 (63%), Gaps = 40/926 (4%)
Query: 727 KCLL-SVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKV 785
+CL+ S N + + HRRLGH +S++S ++L+RGLP LK D +C C+ GK T
Sbjct: 488 RCLVASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSS 547
Query: 786 PFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHS 845
K +V T P +LLH++ GP + +S+GGK Y +V+VDD+SR++WV FL K+E+
Sbjct: 548 SHKPVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFG 607
Query: 846 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVER 905
F + + E + +RSD+G EF+N FES DS G+ H FS P PQQNGVVER
Sbjct: 608 FFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVER 667
Query: 906 KNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISY 965
KNRTL EMARTML E + FW E ++ AC+I NR+ +R IL+KTPYEL +P +S+
Sbjct: 668 KNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSH 727
Query: 966 FHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 1025
FGC C+VL + + L KF+++S + LGY+ S+ +R Y I E+ V FD+
Sbjct: 728 LRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEA 786
Query: 1026 L---------------------DSDQSKLVEKFADLSISVSDKGKALEEAEPEEDDP--- 1061
D D + D + V + G P D P
Sbjct: 787 SPGARPEISGVLDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSP-STTSPSGDAPTTS 845
Query: 1062 ----EEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVSLI 1117
EE S P I HP + ++G E V ++ L V+
Sbjct: 846 SSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYD------LVNSAFVASF 899
Query: 1118 EPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 1177
EPK++ AL D++W+ AM EE+ F +N VWSLV+ P +VIGTKWVF+NKL E G +V
Sbjct: 900 EPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIV 959
Query: 1178 RNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYI 1237
RNKARLVA+G++Q EG+D+ ETF PVARLEAIR+L++F+ + L QMDVKSAFLNG I
Sbjct: 960 RNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVI 1019
Query: 1238 SEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTL 1297
EEVYV QPPGFE+ K P+HVFKL K+LYGLKQAPRAWYERL +FLL+N F G VD TL
Sbjct: 1020 EEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTL 1079
Query: 1298 FCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTP 1357
F D L+VQIYVD IIFG ++ +L +FS +M EFEMSMMGEL +FLG+Q+ QT
Sbjct: 1080 FTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTK 1139
Query: 1358 EGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYL 1417
EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR MIGSLLYL
Sbjct: 1140 EGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYL 1199
Query: 1418 TASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDV 1477
TASRPD FSV LCARFQ+ PR +H AVKRI RY+K T G+ Y +S + + D
Sbjct: 1200 TASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDA 1259
Query: 1478 DYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQL 1537
D+AG + RKST G C FLG++LVSW+S++QS++ STA+AEY++AA +Q+LWM L
Sbjct: 1260 DFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTL 1319
Query: 1538 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDH 1597
+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++L+FV+++
Sbjct: 1320 KDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEK 1379
Query: 1598 KWADIY-KALSRG*I*FHYEKSEYGL 1622
+ ADI+ K L R F + +SE G+
Sbjct: 1380 QLADIFTKPLDRS--RFEFLRSELGV 1403
Score = 110 bits (275), Expect = 4e-22
Identities = 90/345 (26%), Positives = 158/345 (45%), Gaps = 46/345 (13%)
Query: 28 LESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQKKLYAQHHKARAILLSAISY 87
+E++ ++W+ + Y P DA+ +T +++AR ++ IS
Sbjct: 1 MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 52
Query: 88 EEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESFIMEPNESIEEMFSRFQ 147
E+ ++ + A+ ++ +L HEGN ++ + ++Y+ F M P ESI+ F RF
Sbjct: 53 GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 112
Query: 148 LLVAGIRPLNKSYTTKDHVIRVIRSLPES-WMPLVTSIELTRDVERMSLEELISILKCHE 206
+V+ +R + K ++ D+ ++ L W VTSI + + +++++L S LK HE
Sbjct: 113 EIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 172
Query: 207 LKRSEMQDLRKKSIALKSKYEKAKSEKSKA-------LQAEAEESEEASEDSDEDELTLI 259
+ + L K S+AL + + S A L A +EE E ED+L L
Sbjct: 173 MDVFHRKGL-KHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVTEEQLEKIPEDDLALF 231
Query: 260 SKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK-- 317
+++ + +K+ ++K RG + + CFEC E H + +CPKLKK
Sbjct: 232 ARKFSRAYKNVRNKKRG---------------KTNEPFVCFECGEPNHIRVNCPKLKKKS 276
Query: 318 DKRPKK----HFKTKKSLM--------VTFDESESEDVDSDGEVQ 350
DK KK K K LM +E + D+DSD + Q
Sbjct: 277 DKTTKKPEGQGRKGKNDLMKKAIHKVLAALEEVQLSDIDSDDDDQ 321
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 823 bits (2126), Expect = 0.0
Identities = 433/908 (47%), Positives = 579/908 (63%), Gaps = 59/908 (6%)
Query: 722 EAQNVKCLLSVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGK 781
EA CL++ W+ HRRL H M ++S+LSK +LV GL +KF D LC ACQ GK
Sbjct: 640 EANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGK 699
Query: 782 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKD 841
K+++STSRPLELLH+DLFGP +SIGG + +VIVDDYSR+TWV FL K
Sbjct: 700 QVACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKS 759
Query: 842 ESHSVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 901
+F + QNE +C +V++RSD+G EF+N E D GI H+ S +PQQNG
Sbjct: 760 IVAELFKKIAKRAQNEFSCTLVKIRSDNGSEFKNTNIEDYCDDLGIKHELSATYSPQQNG 819
Query: 902 VVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKP 961
VVERKNRTL EMARTML E G++ FWAE +NTAC+ NR + R+L T YEL KP
Sbjct: 820 VVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRFYLHRLLKNTSYELIVGRKP 879
Query: 962 NISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVR 1021
N++YF FGC CY+ RL KF+++ + LLGY+ SK +R YN + T+EE+ V+
Sbjct: 880 NVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGTVEETADVQ 939
Query: 1022 FDDKLDSDQSK----------LVEKFADLS------ISVSDKGKALEEAEPE-------- 1057
FD+ S + L+ ++S I V DK + EP
Sbjct: 940 FDETNGSQEGHENLDDVGDEGLIRAMKNMSFGDVKPIEVEDKPSTSTQDEPSTFATPSQA 999
Query: 1058 --EDDPEEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVS 1115
E + E+A PR + + HP + +LG+ + V+T S ++ VS
Sbjct: 1000 QVEVEEEKAQDPPIPPRIHTTLSKDHPIDQVLGDISKGVQTLSRV----ASICEHYSFVS 1055
Query: 1116 LIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGD 1175
+EPK +DEAL D DW+ AM EE+N F++N VW+LV++P+ +VIGTKWVFRNK +E G
Sbjct: 1056 CLEPKHVDEALCDPDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGL 1115
Query: 1176 VVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1235
VVRNKARLVA+G++Q EG+D+ ETF PVARLEAI +L++F+ +I L QMDVKSAFLNG
Sbjct: 1116 VVRNKARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASWFDIKLFQMDVKSAFLNG 1175
Query: 1236 YISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1295
I+E V+V QPPGFED K P+H FK+ GKVDT
Sbjct: 1176 EIAELVFVEQPPGFEDPKYPNHDFKI-----------------------------GKVDT 1206
Query: 1296 TLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQ 1355
TLF K DD + QIYVD IIFGS N+ CKEF MM EFEMSM+GEL +FLG+Q+ Q
Sbjct: 1207 TLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQ 1266
Query: 1356 TPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLL 1415
+GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLYR MIGSLL
Sbjct: 1267 LKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLL 1326
Query: 1416 YLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYC 1475
YLTASRPD +FSV +CA FQ+ P+E HL AVKRILRYLK ++ +GL Y K +++KL GY
Sbjct: 1327 YLTASRPDIMFSVCMCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYS 1386
Query: 1476 DVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKH 1535
D DYAG + R ST G+CQ LG +LVSW+SK+Q+++ LSTA+AEY+SA C Q+LWMK
Sbjct: 1387 DSDYAGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQ 1446
Query: 1536 QLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDT 1595
L DY I + P+ CDN +AI ++ NP+ HSR KHI++++HF+RD+V K +++ + T
Sbjct: 1447 TLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRT 1506
Query: 1596 DHKWADIY 1603
+ + ADI+
Sbjct: 1507 EDQLADIF 1514
Score = 159 bits (403), Expect = 6e-37
Identities = 128/479 (26%), Positives = 222/479 (45%), Gaps = 66/479 (13%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQKKLY 71
K PMF+G + WK ++ + +W I+ G+ P +E+ +L
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT------GTPLTEIDHRNLQLN 63
Query: 72 AQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESF 131
AQ A L +++S EE+ ++++LE A I+ L HEG + K++K L +YE+F
Sbjct: 64 AQAMNA---LFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETF 120
Query: 132 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPESWMPLVTSIELTRDVE 191
M P+ES+ +M+ R ++V ++ L +YT + +++R+LPE + LVT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML-INSDMS 179
Query: 192 RMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQAEAEESEEASEDS 251
RM+ L+ ++ ++M L+KK + E + S+K ALQAE E+ + ++ +
Sbjct: 180 RMTPASLLG-----KINTNDMYKLKKKEME-----EASPSKKCIALQAEVEDKGKVNDVN 229
Query: 252 D--EDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYK 309
E+E+ L+++R N ++ + +GS + +++ + S+++ CFEC E GH+
Sbjct: 230 KNLEEEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLR---CFECGEKGHFA 286
Query: 310 SDCPKLKKD---------------KRPKKHFKTKKSLMVTFDESE---------SEDVDS 345
S CP D K+ KK K ++ + +D +E ED D
Sbjct: 287 SKCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDD 346
Query: 346 DGEVQGLMTIVKDKEAESKEVP-------DSDSASEEDPNSDDENEVFASFSTSELKHAL 398
+ M +V KEA S P S S D SDD+ + S EL
Sbjct: 347 ASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DISYDELVSMF 403
Query: 399 SDIMDKYNSLLTKHKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANL 457
++ + K K LKKD ++ E + ELK + L S+ LK NL
Sbjct: 404 EELHAYSEKEIVKFKALKKDHASL-------EVLYEELKTSHERLTISHEKLKEAHDNL 455
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 817 bits (2111), Expect = 0.0
Identities = 417/864 (48%), Positives = 566/864 (65%), Gaps = 31/864 (3%)
Query: 740 HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTSRPL 799
HRRLGH +++LS L+LVRGL LK D +C C+ K V T P
Sbjct: 562 HRRLGHVGFDHLTRLSGLDLVRGLSKLKKDLDLICTPCRHAKMVSTSHAPIVSVMTDAPG 621
Query: 800 ELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVFSTFIAQVQNEKA 859
+LLH+D GP + +S+GGK Y +VIVDD+SR++WV F++ KDE+ F +++ E
Sbjct: 622 QLLHMDTVGPARVQSVGGKWYVLVIVDDFSRYSWVFFMTTKDEAFQHFRGLFLRLELEFP 681
Query: 860 CRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQ 919
+ R+RSD+GGEF+N FE + G+ H+FS PR PQQN VVERKNR L EMARTML
Sbjct: 682 GSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNSVVERKNRVLVEMARTMLD 741
Query: 920 EIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFHSFGCVCYVLNTK 979
E + FWAE +NTACYI NR+ +R L KT YEL +P +S+ FGC C+VL +
Sbjct: 742 EYKTTRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGHQPKVSHLRVFGCKCFVLKSG 801
Query: 980 DRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFAD 1039
+ L KF+A+S+ L LGY ++G+R I E+ V FD+ + +
Sbjct: 802 N-LDKFEARSTDGLFLGYPAHTRGYRVLILGTNKIVETCEVSFDEASPGTRPDIA---GT 857
Query: 1040 LSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELILGNKDEPVRTRSA 1099
LS + G+ E+ +DD E + R K + +H V SA
Sbjct: 858 LSQVQGEDGRIFEDESDYDDDDEVGSAGERTTRSK---VTTHD-----------VCANSA 903
Query: 1100 FRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHV 1159
F V+ EPK + AL D+ WI AM EE+ F +N VW+LV+ P +V
Sbjct: 904 F-------------VASFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNV 950
Query: 1160 IGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNH 1219
IGTKWVF+NK NE G +VRNKARLVA+G++Q EG+D+ ETF PVAR+EAIRLL++F+ +
Sbjct: 951 IGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASK 1010
Query: 1220 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERL 1279
L+QMDVKSAFLNG+I EEVYV QPPGFE+ P+HVFKL K+LYGLKQAPRAWY+RL
Sbjct: 1011 GFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRL 1070
Query: 1280 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEM 1339
+FLL F GKVD TLF + D+ L VQIYVD IIFG + ++ +F++ M+ EFEM
Sbjct: 1071 KNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEM 1130
Query: 1340 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDAS 1399
SMMGEL YFLG+Q+ QTP+GT++HQ+KYTK+LL++F M TP+ T +L+ ++
Sbjct: 1131 SMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDG 1190
Query: 1400 GKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 1459
V QK YR MIGSLLYLTASRPD F+V LCARFQ+ PR +H AVKRI+RYL T
Sbjct: 1191 EAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEF 1250
Query: 1460 GLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAE 1519
G+ Y +S LSGY D D+ G R RKST G C FLG++L++W+S++QS++ STA++E
Sbjct: 1251 GIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESE 1310
Query: 1520 YISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 1579
Y++AA C +Q+LW+ L+DY I +P++CDNT+AI+++KNP+ HSR KHI++++HF+
Sbjct: 1311 YVAAASCCSQILWLLSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFL 1370
Query: 1580 RDYVQKGVLLLKFVDTDHKWADIY 1603
RD+V+KG + L+F+DT + ADI+
Sbjct: 1371 RDHVEKGDVELQFLDTKLQIADIF 1394
Score = 127 bits (318), Expect = 4e-27
Identities = 103/423 (24%), Positives = 190/423 (44%), Gaps = 42/423 (9%)
Query: 9 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQK 68
++ KP +FDG F +W +++S+ + + D+W + Y IP + T K
Sbjct: 7 FSTKPHIFDGTDFPHWCSKMQSYIMAENYDIWRKVSHPYV---------IPEAINTDALK 57
Query: 69 KLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKY 128
+ + KAR IL S IS +Y ++ LE A+ I+ +LK H+G K +KE + ++Y
Sbjct: 58 TEFENNCKARNILSSGISRSDYDRVAHLETAHEIWNALKNFHQGTKNIKELRRDLFKKEY 117
Query: 129 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPES-----WMPLVTS 183
F M+ E++++ SRF +++ +R ++ SY + R W VTS
Sbjct: 118 IKFEMKSGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTS 177
Query: 184 IELTRDVERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYE---KAKSEKSKALQAE 240
I+ + ++ ++L+ L + LK E+ + K S + S A S L A
Sbjct: 178 IQESVNMSTLTLDSLYTKLKTREMNILSRKVDSKSSALVSSSSSLIVDASSSMPSFLAAF 237
Query: 241 AEESEEASEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCF 300
S++ E +E++L L++ R+ + +++ RG CF
Sbjct: 238 NATSDDQLEQIEEEDLALVANRIARAMNNARNRKRGGPN------------------RCF 279
Query: 301 ECKESGHYKSDCPKLKKDKRPKKH-FKTKKSLMVTFDESESEDVDSDGEVQGLMTIVKDK 359
EC H +S CPKL + KR K KT + +++S+ + +++ L +
Sbjct: 280 ECGSIDHLRSHCPKLGRGKREDKDGEKTNNNKPNNYNKSKGS--NQGRKMENLRKAFQQV 337
Query: 360 EAESKEVPDSDSASEEDPNSDDENEV-FASFSTSELKH---ALSDIMDKYNSLLTKHKKL 415
A + + D D S +D + ++V F + S+ ++ +S + N L K+KK+
Sbjct: 338 CAAFEPLSDVDGESGDDDKGKNVSDVCFMARGESDTEYEDNEVSAFEEAINILSAKNKKV 397
Query: 416 KKD 418
D
Sbjct: 398 FSD 400
>gb|AAP94592.1| retrotransposon Opie-2 [Zea mays]
Length = 1512
Score = 754 bits (1947), Expect = 0.0
Identities = 396/816 (48%), Positives = 525/816 (63%), Gaps = 63/816 (7%)
Query: 792 VVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVFSTFI 851
+V PLELLH+DLFGPV SIGG +YG+VIVDD+SR+TWV FL K E+ F+
Sbjct: 731 IVFLQIPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRFL 790
Query: 852 AQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQ 911
+ QNE ++ ++RSD+G EF+N + E + GI H+FS P TPQQNGVVERKNRTL
Sbjct: 791 RRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLI 850
Query: 912 EMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFHSFGC 971
+MARTML E + FW+E VNTAC+ NR+ + R+L KT YEL KPN+SYF FG
Sbjct: 851 DMARTMLGEFKTPECFWSEAVNTACHAINRVYLHRLLKKTSYELLTGNKPNVSYFRVFGS 910
Query: 972 VCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQS 1031
CY+L K R KF K+ + LLGY +K +R +N + +E S V FD+ S +
Sbjct: 911 KCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPRE 970
Query: 1032 KLVE----KFADLSISVSDKGKALEEAEPEEDDPEEAGPSDSQPRKKSRIIASHPKELIL 1087
++V+ D+ + + + A+ E P+E D
Sbjct: 971 QVVDCDDVDEEDVP-TAAIRTMAIGEVRPQEQD--------------------------- 1002
Query: 1088 GNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDV 1147
+D+P + + P+++ +P ++EAL D DW+LAM+EE+N F +N+V
Sbjct: 1003 -ERDQPSSSTTVHPPTQDDE----------QPFRVEEALLDLDWVLAMQEELNNFKRNEV 1051
Query: 1148 WSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLE 1207
WSL +E G V RNKARLVAKGY+Q G+D+ ETF PVARLE
Sbjct: 1052 WSL--------------------DEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLE 1091
Query: 1208 AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYG 1267
+IR+L++++ +H+ L+QMDVKSAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYG
Sbjct: 1092 SIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLAKALYG 1151
Query: 1268 LKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCK 1327
LKQAPRAWYE L FL+ N F GK D TLF KT D+ + QI+VD IIFGS NQ C+
Sbjct: 1152 LKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCNGDLFVCQIFVDDIIFGSTNQKSCE 1211
Query: 1328 EFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPM 1387
EFS++M +FEMSMMG+L YFLG QV Q +GT+I Q KYT++LLK+F M ++ AKTPM
Sbjct: 1212 EFSRVMTQKFEMSMMGKLNYFLGFQVKQLKDGTFISQMKYTQDLLKRFGMKDAKPAKTPM 1271
Query: 1388 HPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVK 1447
+ V QK YR MIGSLLYL ASRPD + SV +CARFQS+P+E HL AVK
Sbjct: 1272 GTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSEPKECHLVAVK 1331
Query: 1448 RILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKR 1507
RILRYL T GL Y K S + L GY D D AG + RKST G CQFLG +LVSW SK+
Sbjct: 1332 RILRYLVATPCFGLWYPKGSTFDLVGYSDSDNAGCKVDRKSTSGTCQFLGRSLVSWNSKK 1391
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
Q+++ LSTA+AEY++A C Q+LWM+ L D+ S +P+ CDN +AI +++NP+ H+
Sbjct: 1392 QTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHN 1451
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
R KHI++++HF+RD+ QKG + + V T+++ ADI+
Sbjct: 1452 RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIF 1487
Score = 115 bits (287), Expect = 2e-23
Identities = 116/498 (23%), Positives = 216/498 (43%), Gaps = 69/498 (13%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQKKLY 71
KPP FDG+ + +W ++ + +W+I+ G K S+ +
Sbjct: 100 KPPHFDGEDYGFWSHKMRTHLFSLHPSIWEIV---------ESGMKFDSSDSPVFINEQI 150
Query: 72 AQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESF 131
++ +A +LL+++ +EY K++ L+ A I+++LK+SHEGN +K + + F
Sbjct: 151 HKNAQATTVLLASLCRDEYHKVSGLDNAKQIWDTLKISHEGNDVTLLTKMELVEGELGRF 210
Query: 132 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIR-VIRSLPESWMPLVTSIELTRDV 190
M E + ++R + L+ IR + T V+R ++RS LV +I
Sbjct: 211 AMIRGEEPTQTYNRLKTLINKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRY 270
Query: 191 ERMSLEELISILKCHELKRSEMQDLRKKSIALKSKYEKAKSEKSKALQA-EAEESEEASE 249
+MS EE +L R +++ R AL + + KA ++ EA S+ A
Sbjct: 271 TKMSPEE---VLGKFVSGRMMIKEARYVDDALNGPINEPQPLALKATRSKEALPSKVAQF 327
Query: 250 DS---DEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESG 306
++ +++E+ LI KR + K ++ + KAKGK +CF+C + G
Sbjct: 328 EAAGLNDEEMALIIKRFKTVLKGRKGQ-PSKTKAKGKR-------------SCFKCGKLG 373
Query: 307 HYKSDCPKLKKD------KRPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMT------ 354
H+ ++CP D + KK++K K E +S+ SD + +GL
Sbjct: 374 HFIANCPDNDSDQDQGNKREKKKNYKKAKGEAHLGKEWDSDCSSSDSDNEGLAATAFNKS 433
Query: 355 -----------IVKDKEAESKEVPDSDSASEEDPNSDDENEVFASF---------STSEL 394
+ ++K+ + S+SE++ + DDE + F +EL
Sbjct: 434 SLFPNERHTCLMAREKKVSTHNTSTYASSSEDESSDDDEIDYSCLFKGLDRTKVDKINEL 493
Query: 395 KHALSD---IMDKYNSLL-TKHKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVL 450
AL+D +++K LL +H K + + + +E + SEL + + +
Sbjct: 494 IDALNDRNILLEKQEDLLYEEHDKFVEAQKSLALEIKRNEMLSSELSSCHETIAKLKGFN 553
Query: 451 KNQIANLEEIIACDASDC 468
+ A LE +AC ++ C
Sbjct: 554 DDLNAKLE--VACKSNSC 569
>ref|XP_463224.1| putative integrase [Oryza sativa (japonica cultivar-group)]
gi|40737034|gb|AAR89047.1| putative integrase [Oryza
sativa (japonica cultivar-group)]
Length = 1507
Score = 749 bits (1935), Expect = 0.0
Identities = 398/887 (44%), Positives = 556/887 (61%), Gaps = 52/887 (5%)
Query: 740 HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTSRPL 799
HRRLGH +++LS L+LVRGLP LK D C C K V T P
Sbjct: 625 HRRLGHVGFDHLTRLSGLDLVRGLPKLKKDLDLDCAPCHHAKMVASSHAPIVSVMTDAPR 684
Query: 800 ELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVFSTFIAQVQNEKA 859
+LLH+D GP + +S+GGK Y +VI+DD+SR++WV F++ KDE+ F +++ E
Sbjct: 685 QLLHMDTVGPARVQSVGGKWYVLVIIDDFSRYSWVFFMATKDEAFQHFRGLFLRLELEFP 744
Query: 860 CRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQ 919
+ R+RSD+G E++N FE + G+ H+FS PR PQQNGVVERKN L EM RTML
Sbjct: 745 GSLKRIRSDNGSEYKNASFEQFCNERGLEHEFSSPRVPQQNGVVERKNHVLVEMVRTMLD 804
Query: 920 EIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNIKPNISYFHSFGCVCYVLNTK 979
E + FWAE +NTA YI NR+ +R L K+ YEL +P +S+ FGC C+VL +
Sbjct: 805 EYKTPRKFWAEAINTAYYISNRVFLRSKLGKSSYELRFGHQPKVSHLRVFGCKCFVLKSG 864
Query: 980 DRLHKFDAKSSKCLLLGYSDRSKGFRFYNT----DAKTIEESIHVRFDDKLDS------- 1028
+ L KF+A+S+ L LGY ++G+R + D + E+ DD++ S
Sbjct: 865 N-LDKFEARSTDGLFLGYPAHTRGYRTLSQVQGEDGRIFEDESDDNDDDEVGSAGQTGRQ 923
Query: 1029 -DQSKLVEKFADLSISVSDKGKALEEAEPE--EDDPEEAGPS---DSQPRKKSRIIAS-- 1080
Q+ SD+ E + D P E S D++ S ++A
Sbjct: 924 AGQTAGTPPVRPAHEERSDRPGLSAEGSVDAVRDGPLEITTSTSTDTEHGSTSEVVAPLH 983
Query: 1081 ----HPKELILGNKDEPVRTRSAFRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAME 1136
HP E I+GN E TRS + + + + V+ EPK + AL D+ WI AM
Sbjct: 984 IQQRHPPEQIIGNIGERT-TRS--KVTTHDVCANYAFVASFEPKDVSHALTDESWINAMH 1040
Query: 1137 EEVNEFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDY 1196
EE+ F +N VW+LV+ P ++IGTKWVF+NK NE +VRNKARLVA+G++Q EG+D+
Sbjct: 1041 EELENFERNKVWTLVEPPSGHNIIGTKWVFKNKQNEDDLIVRNKARLVAQGFTQVEGLDF 1100
Query: 1197 TETFVPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPD 1256
ETF PVAR+EAIRL ++F+ + L+QMDVKSAFLNG+I EEVYV QPPGFE+ P+
Sbjct: 1101 DETFAPVARIEAIRLFLAFASSKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPN 1160
Query: 1257 HVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKI 1316
+VFKL K+LYGLKQAPRAWY+RL +FLL F GKVD TLF
Sbjct: 1161 YVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFV----------------- 1203
Query: 1317 IFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFN 1376
L +F++ M+ EFEMSMMGEL YFLG+Q+ QTP+GT++HQ+KYTK+LL++F
Sbjct: 1204 --------LKHDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFK 1255
Query: 1377 MTESTIAKTPMHPTCILEKEDASGKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQS 1436
M TP+ T +L+ ++ V QK YR MIGSLLYLTASRP+ F+V LCARFQ+
Sbjct: 1256 MENCKPISTPIDSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPEIQFAVCLCARFQA 1315
Query: 1437 DPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFL 1496
PR +H AVKRI+RYL T G+ Y +S LSGY D ++ G R RKST G C FL
Sbjct: 1316 SPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSLCLSGYSDANFGGCRIDRKSTSGTCHFL 1375
Query: 1497 GSNLVSWASKRQSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAA 1556
G++L++W+S++QS++ STA++EY++AA C +Q+LW+ L++Y + +P++CDNT+A
Sbjct: 1376 GTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKNYGLTFEKVPLFCDNTSA 1435
Query: 1557 ISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
I+++KN + HSR KH+++++HF+RD+V+KG + L+F+DT + ADI+
Sbjct: 1436 INIAKNLVQHSRTKHVDIRFHFLRDHVEKGDVELQFLDTKLQIADIF 1482
Score = 102 bits (253), Expect = 1e-19
Identities = 122/546 (22%), Positives = 223/546 (40%), Gaps = 99/546 (18%)
Query: 9 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQK 68
++ KP +FDG F +W R++S+ + D D+W + Y IP + TA +K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYV---------IPEAINTAAEK 57
Query: 69 KLYAQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKY 128
+ Q+ KAR ILLS IS +Y ++ L+ A+ I+ +L H+G +KE + ++Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWTTLSNFHQGTNNIKELRRDLFKKEY 117
Query: 129 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRSLPES-----WMPLVTS 183
F M+P E++++ SRF +++ +R ++ SY + R W VTS
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTS 177
Query: 184 IELTRDVERMSLEELISILK-------------------CHELKRSEMQDL---RKKSIA 221
I+ + + ++L+ L + LK C +L R + +D + +
Sbjct: 178 IQESVKMSTLTLDSLYTKLKRGGPNRCFECGSIDHLRSHCPKLGRGKREDKDGEKNNNNK 237
Query: 222 LKSKYEKAKSEK-SKALQAEAEESEEAS----EDSDEDELTLISKRLNHIWKHKQSKYRG 276
K Y+ K E KA Q E S E D+D+ K ++ +
Sbjct: 238 PKGSYQGRKMENLRKAFQQVCAAFEPLSDVDGESGDDDK----GKNVSDV---------- 283
Query: 277 SGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMVTFD 336
A+G+S++ + EV+ FE E+ + S K+K+ +K ++ ++ ++
Sbjct: 284 CFMARGESDTEYED----NEVSAFE--EAINILS-----AKNKKCEKMYRKQEFII---- 328
Query: 337 ESESEDVDSDGEVQGLMTIVKDKEAESKEVPDSDSASEEDPNSDDENEVFASFSTSELKH 396
ES ++DS + I D + E+ EV ++ + D N+ + + S + S H
Sbjct: 329 ESLKSEIDSLKSL-----IPNDDDCENCEVLMNEISKIRDVNTAHDLKNRPSLTCSFALH 383
Query: 397 A--------LSDIMDKYNSLLTKHKKLKKDFSAASKTPSEHEKIISELKNDN-------- 440
++ KY + H L + +A H+ + N N
Sbjct: 384 TRTLDELFLTKKMLQKYQ--IVFHASLMFNMISAKNLKKPHDVLDCSTCNLNKLKLKDAL 441
Query: 441 ------HALVNSNSVLKNQIANLEEIIACDASDCKNESKYEKSFQRFLAKSVDRSLMASM 494
+V +N VL + + D +C N K + L + D +M
Sbjct: 442 GRVEYMEDVVKNNEVLSCPKCRKSKCVMVDCENCANLEKEVSYLKNSLLRFSDGKKNLNM 501
Query: 495 IYGVSR 500
I S+
Sbjct: 502 ILDQSK 507
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 749 bits (1935), Expect = 0.0
Identities = 395/804 (49%), Positives = 516/804 (64%), Gaps = 45/804 (5%)
Query: 840 KDESHSVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQ 899
K E+ F+ + QNE ++ ++RSD+G EF+N + E + GI H+FS P TPQQ
Sbjct: 834 KSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQ 893
Query: 900 NGVVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNI 959
NGVVERKNRTL +MARTML E + FW E VNTAC+ NR+ + R+L KT YEL +
Sbjct: 894 NGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRLLKKTSYELLTDN 953
Query: 960 KPNISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIH 1019
KPN+SYF FG CY+L K R KF K+ + LLGY +K +R +N + +E S
Sbjct: 954 KPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSD 1013
Query: 1020 VRFDDKLDSDQSKLV-------EKFADLSISVSDKGKALEEAEPEEDDP----------- 1061
V FD+ S + ++V E +I G+ + + E D P
Sbjct: 1014 VVFDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQPSSSTMVHPPTE 1073
Query: 1062 -----------EEAGPSDSQ-----------PRKKSRIIASHPKELILGNKDEPVRTRSA 1099
++ G D Q + ++ I HP + ILG+ + V TRS
Sbjct: 1074 DDEQVPQVEALDQGGAQDDQVMEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSR 1133
Query: 1100 FRPSEETLLSMKGLVSLIEPKSIDEALQDKDWILAMEEEVNEFSKNDVWSLVKKPQSVHV 1159
VS IEP ++EAL D DW+LAM+EE+N F +N+VW+LV +P+ +V
Sbjct: 1134 L----VNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NV 1188
Query: 1160 IGTKWVFRNKLNEKGDVVRNKARLVAKGYSQQEGIDYTETFVPVARLEAIRLLISFSVNH 1219
+GTKWVFRNK +E G V RNKARLVAKGY+Q G+D+ ETF PVARLE+IR+L++++ +H
Sbjct: 1189 VGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHH 1248
Query: 1220 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYERL 1279
+ L+QMDVKSAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L
Sbjct: 1249 SFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECL 1308
Query: 1280 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEM 1339
FLL N F GK D TLF KT D+ + QIYVD IIFGS NQ C+EFS++M +FEM
Sbjct: 1309 RDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEM 1368
Query: 1340 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDAS 1399
SMMGEL YFLG QV Q +GT+I Q+KYT++LLK+F M ++ AKTPM +
Sbjct: 1369 SMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGG 1428
Query: 1400 GKVCQKLYRCMIGSLLYLTASRPDNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 1459
V QK YR MIGSLLYL ASRPD + SV +CARFQSDP+E HL AVKRILRYL T
Sbjct: 1429 KSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCF 1488
Query: 1460 GLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWASKRQSTIELSTAKAE 1519
GL Y K S + L GY D DYAG + RKST G CQFLG +LVSW SK+Q+++ LSTA+AE
Sbjct: 1489 GLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAE 1548
Query: 1520 YISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 1579
Y++A C Q+LWM+ L D+ S +P+ CDN + I +++NP+ HSR KHI++++HF+
Sbjct: 1549 YVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRTKHIDIRHHFL 1608
Query: 1580 RDYVQKGVLLLKFVDTDHKWADIY 1603
RD+ QKG + + V T+++ ADI+
Sbjct: 1609 RDHQQKGDIEVFHVSTENQLADIF 1632
Score = 114 bits (286), Expect = 2e-23
Identities = 124/517 (23%), Positives = 219/517 (41%), Gaps = 79/517 (15%)
Query: 12 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDAEGKKIPRSEMTAEQKKLY 71
KPP FDG+ + +W ++ S +W+I+ +G K S+ +
Sbjct: 99 KPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGM---------KFDSSDSPMLINEQI 149
Query: 72 AQHHKARAILLSAISYEEYQKITDLEFANGIFESLKMSHEGNKKVKESKTLSLIQKYESF 131
++ +A +LL+++ EEY K++ L+ A I+++LK+SHEGN +K + + F
Sbjct: 150 HRNAQATTVLLASLCREEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVEGELGRF 209
Query: 132 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIR-VIRSLPESWMPLVTSIELTRDV 190
M E + ++R + LV IR + T V+R ++RS LV +I
Sbjct: 210 AMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRY 269
Query: 191 ERMSLEELISILKCHELKRSE---MQDLRKKSIALKSKYEKAKSEKSKALQAEAEESEEA 247
+MS EE++ + E + D I S +AL ++ + E A
Sbjct: 270 TKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPIALKASRSKEALPSKVAQIEAA 329
Query: 248 SEDSDEDELTLISKRLNHIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGH 307
+++E+ LI KR ++ RG + K+++ G++ +CF+C + GH
Sbjct: 330 G--LNDEEMALIIKRF-------KTALRGRKEHPNKTKTKGKR-------SCFKCGKIGH 373
Query: 308 YKSDCPKLKKDK-------RPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMTIVKDKE 360
+ ++CP D+ KK++K K E +S+ SD + +GL +K
Sbjct: 374 FIANCPDNDSDQEKKSGKWEKKKNYKKAKGEAHIGKEWDSDCSSSDSDNEGLAATAFNKS 433
Query: 361 ------------AESKEV--PDSDSASEEDPNSDDENEV-----FASFSTSELK--HALS 399
A+ K+V +S AS + S DE+EV F S++ + L
Sbjct: 434 TLFPNERHTCLMAKEKKVCTRNSTYASSSEDESSDEDEVDYSCLFKGLDRSKIDKINELI 493
Query: 400 DIMDKYNSLLTKHKKLKKDFSAASKTPSEHEKIISELKNDNHALVNSNSVLKNQIANLEE 459
D +++ N LL K + EH+K + K+ L +I E
Sbjct: 494 DALNEKNILLEKQE---------DSLYEEHDKFVEAQKS-----------LALEIKR-NE 532
Query: 460 IIACDASDCKNESKYEKSFQRFL-AKSVDRSLMASMI 495
++AC+ S C + KS L AK V+ + S +
Sbjct: 533 MLACEVSTCHDSISNLKSINDDLNAKLVEANKSNSCV 569
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,654,050,695
Number of Sequences: 2540612
Number of extensions: 112144253
Number of successful extensions: 470206
Number of sequences better than 10.0: 7349
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 5176
Number of HSP's that attempted gapping in prelim test: 432910
Number of HSP's gapped (non-prelim): 26150
length of query: 1622
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1480
effective length of database: 502,593,490
effective search space: 743838365200
effective search space used: 743838365200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0346.14