BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0344.4
(242 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_483246.1| hypothetical protein [Oryza sativa (japonica cu... 105 1e-21
gb|AAN62347.1| CTV.20 [Poncirus trifoliata] 74 3e-12
emb|CAA33833.1| putative transport protein [Soybean chlorotic mo... 49 9e-05
ref|NP_043929.1| ORF I [Strawberry vein banding virus] gi|136060... 49 1e-04
dbj|BAB47272.1| movement protein [Grapevine berry inner necrosis... 45 0.002
ref|NP_042515.1| putative cell-to-cell transport protein [Peanut... 42 0.011
ref|NP_861411.1| putative movement protein [Cestrum yellow leaf ... 39 0.097
gb|AAG32647.2| 4b protein [Lettuce necrotic yellows virus] 36 1.1
ref|NP_700957.1| hypothetical protein PF11_0093 [Plasmodium falc... 36 1.1
gb|AAT94035.1| hypothetical protein [Oryza sativa (japonica cult... 36 1.1
gb|AAL80709.1| DEXX-box atpase [Pyrococcus furiosus DSM 3638] gi... 35 1.4
ref|XP_642117.1| hypothetical protein DDB0204416 [Dictyostelium ... 35 1.4
ref|NP_704803.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.8
emb|CAA55855.1| putative movement protein [Heracleum latent virus] 35 1.8
ref|YP_224131.1| 51 kDa protein [Apricot pseudo-chlorotic leaf s... 35 2.4
emb|CAA28356.1| unnamed protein product [Carnation etched ring v... 35 2.4
emb|CAA53198.1| putative movement protein [Grapevine virus B] gi... 35 2.4
emb|CAH59635.1| Movement protein [Carnation etched ring virus] 35 2.4
pir||B45353 orf2 protein - apple chlorotic leaf spot virus (stra... 34 3.1
ref|NP_912855.1| unnamed protein product [Oryza sativa (japonica... 34 3.1
>ref|XP_483246.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|42408922|dbj|BAD10179.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1275
Score = 105 bits (261), Expect = 1e-21
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 34/231 (14%)
Query: 11 NNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQRISIL 70
N S + ++E+ + NW IPK+ ++Y + EI ++
Sbjct: 5 NASSISFEDIEKSISNWKIPKVNIKEIYHV-------EREINSIRAK------------- 44
Query: 71 DSRIVNQHVRKYRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECN 130
+Y LH GL+Q+A++ LTR + ++ +L CLRD R RF +S+L ++E +
Sbjct: 45 ---------HQYHYLHFGLIQVAIRSLTR-KGLNVSVLACLRDCRNKRFKDSLLGMVEAS 94
Query: 131 IQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLS 190
+ NGP YFN FP + V L D ++ + L+++ G +S+ YR YK L+
Sbjct: 95 LSNGPVYFNTFPDFSVSLSDTNIHKVLTLNLQTSGYDLEPGSENISVTYRVYYKAMTTLA 154
Query: 191 GIKAVRDYTVNE-TEVTEINAENSSRITRKILKHDEITYPQEWLQGCSSQP 240
+ YT T + + N N I K LK DEIT P++W+ + +P
Sbjct: 155 --PCAKHYTPKGLTTLLQTNPNNRHTIP-KTLKWDEITLPEKWVLSQAVEP 202
>gb|AAN62347.1| CTV.20 [Poncirus trifoliata]
Length = 3148
Score = 74.3 bits (181), Expect = 3e-12
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 94 VKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNIQNGPAYFNCFPSYPVCLRDPHV 153
+KPLT+ D IL LRD R + F +S+L+ +E ++ GP F+C+P+ + L+D +V
Sbjct: 102 IKPLTK-EGLDTSILAVLRDGRFISFDDSLLSSIESSLCKGPIPFDCYPNITISLKDKNV 160
Query: 154 TTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKAVRDYTVNETEVTEINAENS 213
+ L IK N I G PV+++++ YK + + +ET + + + +
Sbjct: 161 LKSMILQIKTHNYKMIKGSIPVALIFKISYKAMVSAFSTQHRFQSKRDETLLLQTDLSRA 220
Query: 214 SRITRKILKHDEITYPQEW-LQGCSSQPAP 242
+ + K ++ +I P+EW L+G + P
Sbjct: 221 NTVIPKPIQWKDINLPEEWILEGAAPPTIP 250
>emb|CAA33833.1| putative transport protein [Soybean chlorotic mottle virus]
gi|9629141|ref|NP_044299.1| putative transport protein
[Soybean chlorotic mottle virus] gi|76788|pir||JS0379
hypothetical 35.5K protein - soybean chlorotic mottle
virus gi|139996|sp|P15631|VMP_SOCMV Movement protein
(Cell-to-cell transport protein) (ORF IA)
Length = 303
Score = 49.3 bits (116), Expect = 9e-05
Identities = 42/152 (27%), Positives = 75/152 (48%), Gaps = 6/152 (3%)
Query: 72 SRIVNQHVRKYRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNI 131
S+I + R R +HI +Q+ +K T L+ D P+ + LRD R+L ES +AV N+
Sbjct: 89 SKIEEKQRRLIRYVHISTLQVLIKS-TFLKGLDTPLELTLRDNRLLNLEESKIAVGHGNL 147
Query: 132 QNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFI-DGIPPVSIMYRFCYKVTDNLS 190
+ G F+ + L+D + + L+ K F+ +G SI YR Y ++++
Sbjct: 148 KYGKMKFDVNLQLGLSLKDLDLDRSIILNYKFLRRNFMKEGNHAFSISYRINYALSNSHH 207
Query: 191 GI--KAVRDYTVNE--TEVTEINAENSSRITR 218
+ K ++E +EV E+ S++T+
Sbjct: 208 SVEFKQKEKIYIDELFSEVLELKHPVFSKLTK 239
>ref|NP_043929.1| ORF I [Strawberry vein banding virus] gi|1360609|emb|CAA65972.1|
ORF I [Strawberry vein banding virus]
Length = 328
Score = 48.9 bits (115), Expect = 1e-04
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 48 DYEIKTVEKSFAVQGPYQRISILDS--RIVNQHVRKYRD-LHIGLVQLAVKPLTRLRYCD 104
+Y I+ + + + P+ ++S R++ RK D +HIG V++ +K R D
Sbjct: 78 EYPIEIAQANGLTEIPFFNREEIESKKRVLKPEDRKKIDFIHIGSVKIMIKSTFRTGI-D 136
Query: 105 LPILICLRDKRMLRFHESVLAVLECNIQNGPAYFNCFPSYPVCLRDPHVTTCVDL-DIKI 163
PI + L D+RM ++V ++ N+ G F P V LRDP + + L
Sbjct: 137 SPISVALLDRRMKNAKDAVFGGVKGNLSYGKLIFTYNPKISVSLRDPTINKTLTLAHFFE 196
Query: 164 PNEMFIDGIPPVSIMYRFCYKVTDN 188
E+ +G P +I Y+ Y ++++
Sbjct: 197 KEELMHEGNHPYTISYKIGYTLSNS 221
>dbj|BAB47272.1| movement protein [Grapevine berry inner necrosis virus]
Length = 350
Score = 44.7 bits (104), Expect = 0.002
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 33 RTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQRISILDSRIVNQHVRKYRDLHIGLVQL 92
R VY+ + ++ + T+ P +++ +L+ +N +H G + +
Sbjct: 46 RNEIVYQVEPSSISDEFRVTTIPIV-----PMEQLKLLNGSNMNY-------IHFGALSI 93
Query: 93 AVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNIQNGPAYFNCFPSYPVCLRDPH 152
++ PL + R + + D R +++L ++ +G A C P+Y V L DP
Sbjct: 94 SIDPLFK-RNSGVKGKAFVYDSRWNNAEQALLQAFSFDLNSGTASLICSPNYSVQLTDPR 152
Query: 153 VTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKAVRDYT 199
++TC+ + N F +G +S+ Y+ ++ G D T
Sbjct: 153 LSTCLSTVLVFENLNFREGSFAISVRIGVMYRPYNSYIGDSLELDQT 199
>ref|NP_042515.1| putative cell-to-cell transport protein [Peanut chlorotic streak
virus] gi|555887|gb|AAA50242.1| putative cell-to-cell
transport protein
Length = 320
Score = 42.4 bits (98), Expect = 0.011
Identities = 39/178 (21%), Positives = 74/178 (40%), Gaps = 11/178 (6%)
Query: 15 ENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQRISILDSR- 73
E++ + QK+ + KI + I I+ F Q P +IS + R
Sbjct: 46 ESNEGINQKI----LEKINRKNIIYNGIMCGEQSVPIEQATAKF--QAPVVKISQVQERL 99
Query: 74 --IVNQHVRKYRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNI 131
I +K +H+ +VQ+ ++ R P++I + D R+ S+L +E ++
Sbjct: 100 KKIKETDRKKIGFIHVNVVQIVIRSTFR-EGITTPVIIRVEDNRIQDKRYSLLGQIEGDL 158
Query: 132 QNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKI-PNEMFIDGIPPVSIMYRFCYKVTDN 188
G FN YP+ L C+ + + ++ G P+ + YR Y +T++
Sbjct: 159 GYGVIKFNVTLQYPIPLITRSFNNCIGVICEFRKQDLMKQGDIPLVVCYRIAYALTNS 216
>ref|NP_861411.1| putative movement protein [Cestrum yellow leaf curling virus]
gi|32305277|gb|AAP78919.1| putative movement protein
[Cestrum yellow leaf curling virus]
Length = 312
Score = 39.3 bits (90), Expect = 0.097
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 72 SRIVNQHVRKYRD-LHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECN 130
S+I NQ RK +HI +Q+ +K T L+ D PI + + D+R+ E ++ ++ N
Sbjct: 93 SKIRNQEKRKTLSCIHISTIQIVLKS-TFLKGLDYPISLAITDERINNPKEKIIGIVHGN 151
Query: 131 IQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIK-IPNEMFIDGIPPVSIMYRFCYKVTDNL 189
+ F+ + + L + ++ + L K N++ D SI Y Y + ++
Sbjct: 152 LATVTLKFSVHLGFAIPLTEEDLSRSISLTYKAYRNDLMNDQKQGFSITYAVSYALANSH 211
Query: 190 SGIK 193
I+
Sbjct: 212 HSIQ 215
>gb|AAG32647.2| 4b protein [Lettuce necrotic yellows virus]
Length = 302
Score = 35.8 bits (81), Expect = 1.1
Identities = 27/148 (18%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 85 LHIGLVQLAVKPLTRLRYC-----DLPILICLRDKRMLRFHESVLAVLECNIQNGPAYFN 139
LHIG + ++++PL RY + + D + +S++++ + ++ G A +
Sbjct: 78 LHIGCITVSIEPLLHQRYMKNFGKTIAGNCAIIDSTFRKVDQSIISLHKYDLSRGRADYV 137
Query: 140 CFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIK--AVRD 197
+P++ + L DP + + + + I G+ SI + + L + ++
Sbjct: 138 SYPNHCLSLTDPMIQKRLSVLLGIKGIDVEPGVELFSICIGYIVSSVNTLHPVSQLGIQG 197
Query: 198 YTVNETEVTEINAENSSRITRKILKHDE 225
+N TE +I+ + I + L +++
Sbjct: 198 VAINGTESADIDELGAEDIDQLSLSYND 225
>ref|NP_700957.1| hypothetical protein PF11_0093 [Plasmodium falciparum 3D7]
gi|23496019|gb|AAN35681.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 568
Score = 35.8 bits (81), Expect = 1.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 6 LNQHANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFE------FNPDYEIKTVEKS 57
L+ H + +EEN ++ +QNW P I N YK + E NP+Y K +EK+
Sbjct: 427 LHSHKHETEENKKLIKNIMQNWMGPIIGINTNYKQYLKERQKRISENPEYHKKVLEKA 484
>gb|AAT94035.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 950
Score = 35.8 bits (81), Expect = 1.1
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 150 DPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKAVRDYTVNETEVTEIN 209
D ++ + L+++ + G +S+ YR YK L+ + YT
Sbjct: 35 DTNIHKVLTLNLQTSSYELEPGSENISVTYRVYYKAMTTLA--PCAKHYTPKGLTTLLQT 92
Query: 210 AENSSRITRKILKHDEITYPQEWLQGCSSQP 240
N+ T K LK DEIT P++W+ + +P
Sbjct: 93 NPNNRCTTPKTLKWDEITLPEKWVLSQAVEP 123
>gb|AAL80709.1| DEXX-box atpase [Pyrococcus furiosus DSM 3638]
gi|18976957|ref|NP_578314.1| DEXX-box atpase [Pyrococcus
furiosus DSM 3638]
Length = 435
Score = 35.4 bits (80), Expect = 1.4
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 12/81 (14%)
Query: 154 TTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKAVRDYTVNETEVTEINAENS 213
TT + L +K ++ +GI P SI Y C ++D + + +Y E+ EI S
Sbjct: 58 TTLLKLIVK---KLLDEGINPRSIFYLRCDYISDYKELMNVIDEYL----EIREIEGIRS 110
Query: 214 SRITRKILKHDEITYPQEWLQ 234
S I DE+T+P+EW +
Sbjct: 111 SYILL-----DEVTFPREWFR 126
>ref|XP_642117.1| hypothetical protein DDB0204416 [Dictyostelium discoideum]
gi|60470239|gb|EAL68219.1| hypothetical protein
DDB0204416 [Dictyostelium discoideum]
Length = 817
Score = 35.4 bits (80), Expect = 1.4
Identities = 33/138 (23%), Positives = 64/138 (45%), Gaps = 12/138 (8%)
Query: 7 NQHANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQR 66
N + N++ N++++ +++ KI N+ KT IF++ +K ++ Q Y
Sbjct: 3 NNNKNSNNNNNNSINNNNKDFLFFKIWKNKYIKTIIFKY-----LKIKQQ----QQQYYN 53
Query: 67 ISILDSRIVNQHVRKYRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAV 126
IL++RI + Y+ ++ L+ + K L R + + IL D + F E
Sbjct: 54 DEILENRIYYNY---YQLKNVDLMSINNKGLLRDKVKNSMILKFTFDSNKIPFQEIFKNF 110
Query: 127 LECNIQNGPAYFNCFPSY 144
+ + +N YFN F +Y
Sbjct: 111 KKNSEKNKEFYFNLFKNY 128
>ref|NP_704803.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505165|emb|CAD51946.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1922
Score = 35.0 bits (79), Expect = 1.8
Identities = 20/67 (29%), Positives = 34/67 (49%), Gaps = 11/67 (16%)
Query: 12 NSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQRISILD 71
N ++ + +L NWS P +R N S+F++N Y E+S + Y+ ++ D
Sbjct: 1551 NDKDTNKSLNNNYNNWSEPPLRNN----NSLFDYNNTYR----EQSNVL---YKNLNYQD 1599
Query: 72 SRIVNQH 78
S I+N H
Sbjct: 1600 SDIINHH 1606
>emb|CAA55855.1| putative movement protein [Heracleum latent virus]
Length = 343
Score = 35.0 bits (79), Expect = 1.8
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 81 KYRDLHIGLVQLAVKPLTRLRYCDLP--ILICLRDKRMLRFHESVLAVLECNIQNGPAYF 138
K+ LHIG V ++V P R D+P + I + D R + VL+ C ++N + F
Sbjct: 138 KFPYLHIGCVAISVIPHGR----DMPGQVSIEIVDSRYTS-GKGVLSRFGCEMKNALSAF 192
Query: 139 NCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSI 177
FP Y V D + L +K N +G+ P+S+
Sbjct: 193 ARFPGYFVSAYDVIDGYTIGLKVKAKNLELHEGVRPLSL 231
>ref|YP_224131.1| 51 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
gi|57639323|gb|AAW55582.1| 51 kDa protein [Apricot
pseudo-chlorotic leaf spot virus]
Length = 457
Score = 34.7 bits (78), Expect = 2.4
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 113 DKRMLRFHESVLAVLECNIQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGI 172
DKR F +++L E N+ G A P++ V L DP +T + + + N F
Sbjct: 114 DKRWTTFDQALLQKFEFNLDKGSATMITSPNFSVALDDPGLTDSICVAVVFENLNFKKDN 173
Query: 173 PPVSI 177
P+S+
Sbjct: 174 YPISV 178
>emb|CAA28356.1| unnamed protein product [Carnation etched ring virus]
gi|19919890|ref|NP_612573.1| Movement protein [Carnation
etched ring virus] gi|76772|pir||S00850 movement protein
- carnation etched ring virus
gi|140002|sp|P05396|VMP_CERV Movement protein
(Cell-to-cell transport protein) gi|225352|prf||1301227A
ORF 1
Length = 319
Score = 34.7 bits (78), Expect = 2.4
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 73 RIVNQHVRK-YRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNI 131
+I ++ VR D+H G +++ +K R + PI + L D R+ +S+L N+
Sbjct: 106 KIKDEKVRSTISDIHFGAIKVLIKARFR-EGINSPIKMALIDDRITDRQDSILGAAHGNL 164
Query: 132 QNGPAYFNCFPSYPVCLRDPHV-TTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLS 190
G F +P Y + D + T + N++ G SI Y Y + ++
Sbjct: 165 VYGKFMFTVYPKYTTSILDQRLDRTLAFIHHFERNDLMRKGDKVFSITYLVAYALANSHH 224
Query: 191 GIKAVRDYTVNET-EVTEINAENSS 214
I DY + E+ ++ +E S
Sbjct: 225 SI----DYKEKDAIEIDDVFSEIGS 245
>emb|CAA53198.1| putative movement protein [Grapevine virus B]
gi|20153380|ref|NP_619656.1| putative movement protein
[Grapevine virus B] gi|632123|pir||S45000 movement
protein - grapevine virus B gi|1091839|prf||2022155D ORF
in 3' terminal region
Length = 322
Score = 34.7 bits (78), Expect = 2.4
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 65 QRISILDSRIVNQ-HVRKYRDLHIGLVQLAVKPLTRLRYCDLP--ILICLRDKRMLRFHE 121
Q I+++D V + Y LH+G V + V P R DL + LRD R L
Sbjct: 93 QVINLMDEDFVKKIETTSYPYLHLGCVAICVIPHGR----DLKGEVEFTLRDTRFLP-RS 147
Query: 122 SVLAVLECNIQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRF 181
+ L C + + F+ FP Y V D ++L ++ F +G+ P+SI
Sbjct: 148 NPLMSFGCKAERMLSAFSAFPGYFVSTYDLIDGFTMELMVRAKGMEFEEGVRPMSIQIIP 207
Query: 182 C 182
C
Sbjct: 208 C 208
>emb|CAH59635.1| Movement protein [Carnation etched ring virus]
Length = 319
Score = 34.7 bits (78), Expect = 2.4
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 73 RIVNQHVRK-YRDLHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESVLAVLECNI 131
+I ++ VR D+H G +++ +K R + PI + L D R+ +S+L N+
Sbjct: 106 KIKDEKVRSTISDIHFGAIKVLIKARFR-EGINSPIKMALIDDRITDRQDSILGAAHGNL 164
Query: 132 QNGPAYFNCFPSYPVCLRDPHV-TTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLS 190
G F +P Y + D + T + N++ G SI Y Y + ++
Sbjct: 165 VYGKFMFTVYPKYTTSILDQRLDRTLAFIHHFERNDLMRKGDKVFSITYLVAYALANSHH 224
Query: 191 GIKAVRDYTVNET-EVTEINAENSS 214
I DY + E+ ++ +E S
Sbjct: 225 SI----DYKEKDAIEIDDVFSEIGS 245
>pir||B45353 orf2 protein - apple chlorotic leaf spot virus (strain P863)
gi|137317|sp|P27739|V51K_ACLSP 50.8 kDa protein (ORF2)
gi|9626207|ref|NP_040552.1| movement protein [Apple
chlorotic leaf spot virus] gi|210295|gb|AAA42588.1|
putative
Length = 460
Score = 34.3 bits (77), Expect = 3.1
Identities = 30/131 (22%), Positives = 57/131 (42%), Gaps = 5/131 (3%)
Query: 67 ISILDSRIVNQHVRKYRD---LHIGLVQLAVKPLTRLRYCDLPILICLRDKRMLRFHESV 123
I ++ S V +RK +H G + +++ L R + + + D R F +++
Sbjct: 66 IPVIPSSEVQAVLRKRESTNYVHWGALSISIDALFR-KNAGVSGWCYVYDNRWETFEQAM 124
Query: 124 LAVLECNIQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSI-MYRFC 182
L N+ +G A P++PV L DP ++ + + + N F P+S+ + C
Sbjct: 125 LQKFHFNLDSGSATLVTSPNFPVSLDDPGLSNSISVAVMFENLNFKFESYPISVRVGNMC 184
Query: 183 YKVTDNLSGIK 193
LS +K
Sbjct: 185 RFFDSFLSSVK 195
>ref|NP_912855.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 719
Score = 34.3 bits (77), Expect = 3.1
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 171 GIPPVSIMYRFCYKVTDNLSGIKAVRDYTVNETEVTEINAENSSRITRKILKHDEITYPQ 230
G +S+ YR YK L+ + YT N+ T K LK DEIT P+
Sbjct: 109 GSENISVTYRVYYKAMTTLA--PCAKHYTPKGLTTLLQTNPNNRCTTPKTLKWDEITLPE 166
Query: 231 EWLQGCSSQP 240
+W+ + +P
Sbjct: 167 KWVLSQAVEP 176
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,284,798
Number of Sequences: 2540612
Number of extensions: 15749415
Number of successful extensions: 36656
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 36634
Number of HSP's gapped (non-prelim): 57
length of query: 242
length of database: 863,360,394
effective HSP length: 124
effective length of query: 118
effective length of database: 548,324,506
effective search space: 64702291708
effective search space used: 64702291708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0344.4