BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0343.1
(338 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 456 e-127
gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cult... 454 e-126
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap... 445 e-123
gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japon... 444 e-123
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 443 e-123
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 441 e-122
emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar... 437 e-121
emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultiva... 436 e-121
gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japon... 404 e-111
gb|AAG46116.1| putative copia-like retrotransposon polyprotein [... 394 e-108
ref|XP_506588.1| PREDICTED P0597G07.109 gene product [Oryza sati... 385 e-105
gb|AAP52413.1| putative polyprotein [Oryza sativa (japonica cult... 341 2e-92
gb|AAX92854.1| retrotransposon protein, putative, unclassified [... 333 3e-90
emb|CAB81170.1| retrotransposon like protein [Arabidopsis thalia... 330 5e-89
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha... 330 5e-89
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 327 4e-88
gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T... 326 7e-88
gb|AAL66754.1| putative copia-like retrotransposon Hopscotch pol... 325 1e-87
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 323 3e-87
ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativ... 323 3e-87
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 456 bits (1174), Expect = e-127
Identities = 220/338 (65%), Positives = 268/338 (79%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+++ G IAY+LLYVDDIIL AS+ L + A L SEFAM DLG L +FLGI+V
Sbjct: 739 DTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISV 798
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GLFLSQ YA +++ RAGMA C+ ++TPVDT KLS++ G P D + YRS+AGA
Sbjct: 799 KRSPDGLFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGA 858
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPD++YAVQQVCL MH P H+ +KR+LRYV+G+L+ GLH+ PI L +
Sbjct: 859 LQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQSLTA 918
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCP++RRSTSGYCV+LGDNL+SWSSKRQ T+SRSSAEAEYR VA+ V+E CW+
Sbjct: 919 YSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWL 978
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P++ AT+V+CDNVSA+Y++ NPVHH+RTKHIE+DIHFVREKVA GQ RVL+
Sbjct: 979 RQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVALGQVRVLY 1038
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
VPS HQ ADI TKGLP LF DFRSSL V PPA+TAG
Sbjct: 1039 VPSSHQFADIMTKGLPVQLFTDFRSSLCVRAPPAATAG 1076
>gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1480
Score = 454 bits (1168), Expect = e-126
Identities = 218/336 (64%), Positives = 265/336 (77%)
Query: 3 SLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTR 62
SLF+++ G +IAY+LLYVDDIIL ASS L A L SEFAM DLG L +FLGI+VTR
Sbjct: 1143 SLFVYKDGDNIAYLLLYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTR 1202
Query: 63 HAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQ 122
+ GLFLSQ Y +++ RAGM+ C+ +ATPVD + KLS++ G P D T YRSL GALQ
Sbjct: 1203 SSDGLFLSQRQYVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQ 1262
Query: 123 YLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYT 182
YLT TRP+++YAVQQVCL MH P H+ +KR+LRY++GTL GLHL +P+ L +Y+
Sbjct: 1263 YLTLTRPELAYAVQQVCLFMHDPREPHLALIKRILRYIKGTLHIGLHLGTTPVDSLTAYS 1322
Query: 183 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 242
DADW GCPD+ RSTSGYCVFLGDNL+SWSSKRQ T+SRSSAEAEYR VA+ ++E CW+R
Sbjct: 1323 DADWAGCPDSHRSTSGYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQ 1382
Query: 243 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVP 302
LL ELH L+ AT+V+CDNVSA+Y++ NPVHH+RTKHIE+DIHFVREKVA GQ RVLH+P
Sbjct: 1383 LLSELHISLTSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLP 1442
Query: 303 SRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
S HQ ADI TKGLP LF +FRSSL V + PASTAG
Sbjct: 1443 SSHQFADIMTKGLPVQLFTEFRSSLCVRDNPASTAG 1478
>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1373
Score = 445 bits (1144), Expect = e-123
Identities = 219/333 (65%), Positives = 260/333 (77%), Gaps = 1/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI RRG D +LLYVDDI+L ASS +L + +A L EFAM D+GPL +FLGI V
Sbjct: 1041 DSSLFIHRRGNDTVLLLLYVDDIVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITV 1100
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR A GLFLSQ Y+ +I+ RAGM C P +TPVD KLS+ G P D+T YRSLAGA
Sbjct: 1101 TRFASGLFLSQRQYSQDILERAGMGECKPCSTPVDVHSKLSAD-GPPVADSTQYRSLAGA 1159
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLTFTRPDI++AVQQVCL+MH P H+ ALKR+LRY++GTL+ GL + SP LV
Sbjct: 1160 LQYLTFTRPDIAFAVQQVCLYMHDPREPHLAALKRILRYIQGTLSLGLTMRRSPPTDLVV 1219
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
YTDADW GCPDTRRSTSGY VFLGDNL+SWSSKRQ T+SRSSAEAEYR VAN V+E+ W+
Sbjct: 1220 YTDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWL 1279
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL+ELH P AT+V+CDNVSA+YLS NPV HQRTKH+E+D+HFVREKVA G RVLH
Sbjct: 1280 RQLLMELHRPPRTATVVYCDNVSAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLH 1339
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
VP+ Q AD+FTKGLP LF +FR+SL++ + P
Sbjct: 1340 VPTTSQYADVFTKGLPTSLFQEFRTSLTISDAP 1372
>gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530576|ref|NP_919590.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|17047028|gb|AAL34933.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 725
Score = 444 bits (1141), Expect = e-123
Identities = 213/338 (63%), Positives = 264/338 (78%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 346 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 405
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA+ ++ RAGMA+C ATP D K KLSS G +D++ YRS+ GA
Sbjct: 406 QRTADGFVLSQSKYATNVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSITGA 465
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 466 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 525
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 526 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 585
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+R KHIE+DIHFVREKVA G+ RVL
Sbjct: 586 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRIKHIELDIHFVREKVALGELRVLP 645
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+ S HQ AD+FTKGLP +F++FR+SL VG+ A+TAG
Sbjct: 646 ISSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG 683
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 443 bits (1139), Expect = e-123
Identities = 219/329 (66%), Positives = 254/329 (76%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI RG D Y+LLYVDDI+L ASS L ++ L EF+MKDLG L +FLG++V
Sbjct: 1350 DTSLFILHRGNDTVYLLLYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSV 1409
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR++ GL LSQ Y +I+ RAGMA C P TPVDT KLSSS G P D T +RSLAGA
Sbjct: 1410 TRNSAGLVLSQRQYCIDILERAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGA 1469
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLTFTRPDISYAVQQVCLHMH P H+ ALKR+L Y+RG++ GLH+ S L
Sbjct: 1470 LQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAV 1529
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCPDTRRSTSGY VFLGDNL+SWSSKRQ T+SRSSAEAEYR VAN V+E W+
Sbjct: 1530 YSDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWL 1589
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P S+ATLV+CDNVSA+YLS NPV HQRTKH+E+D+HFVRE+VA G RVLH
Sbjct: 1590 RQLLQELHSPPSRATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLH 1649
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
VP+ Q ADIFTKGLP +F +FRSSL+V
Sbjct: 1650 VPTTSQYADIFTKGLPTPVFTEFRSSLNV 1678
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 441 bits (1135), Expect = e-122
Identities = 211/329 (64%), Positives = 261/329 (79%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 1070 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1129
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++++ RAGMA+C ATP D K KLSS G +D++ YRS+AGA
Sbjct: 1130 QRTADGFVLSQSKYATDVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGA 1189
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1190 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1249
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1250 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1309
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1310 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1369
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+PS HQ AD+FTKGLP +F++FR+SL V
Sbjct: 1370 IPSAHQFADVFTKGLPSSMFNEFRASLCV 1398
>emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar-group)]
gi|50923461|ref|XP_472091.1| OSJNBa0061G20.2 [Oryza
sativa (japonica cultivar-group)]
Length = 542
Score = 437 bits (1125), Expect = e-121
Identities = 212/338 (62%), Positives = 257/338 (75%), Gaps = 1/338 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D+SLF+ RRGTD A++LLYVDDI+L ASS L + + L EFAMKDLGP+ +FLGI V
Sbjct: 201 DNSLFVLRRGTDEAHLLLYVDDIVLAASSQRLLQHIINQLRVEFAMKDLGPVHFFLGIQV 260
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G FLSQ YA +++ RAG+A C P+ TP+DTK K+SS++G P D T YRS+ GA
Sbjct: 261 RRTADGFFLSQEQYAGDVLDRAGLADCKPAPTPIDTKAKVSSTTGQPYSDPTFYRSIVGA 320
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPD+SYAVQQVCLHMH+P H +KR+LRYVRGT GL L S L +
Sbjct: 321 LQYLTLTRPDLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKGLQLRRSSTPSLTA 380
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D DW GCPDTRRSTSG+CVF GD+ SWSSKRQ +SRSSAEAEYRGVAN +E CW+
Sbjct: 381 YSDVDWAGCPDTRRSTSGFCVFFGDSSESWSSKRQSVVSRSSAEAEYRGVANAAAECCWL 440
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R+LL ELH L +ATLV+CDN+SA+YLS NP+HH R KH+E+D+HFVREKVA G RV H
Sbjct: 441 RHLLGELHVKLDKATLVYCDNISAVYLSKNPLHHGRAKHVELDVHFVREKVAVGDIRVAH 500
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+P+R Q+ADI TK LP LF+DFRSSL + + A TAG
Sbjct: 501 IPTRQQLADIMTKRLPTALFEDFRSSLCIVD-DAPTAG 537
>emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultivar-group)]
gi|32487794|emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1246
Score = 436 bits (1120), Expect = e-121
Identities = 214/337 (63%), Positives = 258/337 (76%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI R G +AY+LLYVDDIIL+ASS L A L +EFAM DLG L +FLGI+V
Sbjct: 907 DTSLFILRDGDRLAYLLLYVDDIILMASSAELLCHITARLHTEFAMTDLGDLHFFLGISV 966
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R LFLSQ YA +++ RAGM+ +P+ATPVD + KLS+S G P D T YRSLA A
Sbjct: 967 RRTPDDLFLSQRQYAVDLLQRAGMSEYHPTATPVDARAKLSASEGAPVADPTEYRSLADA 1026
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRP+I+YAVQQVC MH PH H+ +KR++RY++G+L+ GLH+ P+ L +
Sbjct: 1027 LQYLTLTRPEIAYAVQQVCRFMHDPHEPHLALVKRIMRYIKGSLSAGLHIGTGPVGSLTA 1086
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCPD+RRSTSGYC+FLGDNL+SWSSKRQ T+SRSSAEAEYR VA+ ++E C +
Sbjct: 1087 YSDADWAGCPDSRRSTSGYCIFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCCL 1146
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P+S T+V CDNVSA Y++ NPVHH+ TKHIE+DIHFVREKVA GQ RVLH
Sbjct: 1147 RQLLQELHAPISTTTVVFCDNVSAAYMTANPVHHRCTKHIEIDIHFVREKVALGQVRVLH 1206
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTA 337
VPS HQ D TKGLP LF DFRSSL V +PPA+TA
Sbjct: 1207 VPSTHQFPDFMTKGLPVQLFTDFRSSLCVRDPPAATA 1243
>gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536522|ref|NP_922563.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|13310887|gb|AAG13591.2| putative gag/pol polyprotein
[Oryza sativa]
Length = 1417
Score = 404 bits (1038), Expect = e-111
Identities = 200/338 (59%), Positives = 248/338 (73%), Gaps = 32/338 (9%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 1070 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1129
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++ D++ YRS+AGA
Sbjct: 1130 QRTADGFVLSQSKYATD--------------------------------DSSWYRSIAGA 1157
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1158 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1217
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1218 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1277
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1278 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1337
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+PS HQ AD+FTKGLP +F++FR+SL VG+ A+TAG
Sbjct: 1338 IPSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG 1375
>gb|AAG46116.1| putative copia-like retrotransposon polyprotein [Oryza sativa]
Length = 1302
Score = 394 bits (1012), Expect = e-108
Identities = 195/329 (59%), Positives = 241/329 (72%), Gaps = 32/329 (9%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 972 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1031
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++ D++ YRS+AGA
Sbjct: 1032 QRTADGFVLSQSKYATD--------------------------------DSSWYRSIAGA 1059
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1060 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1119
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1120 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1179
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1180 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1239
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+PS HQ AD+FTKGLP +F++FR+SL V
Sbjct: 1240 IPSAHQFADVFTKGLPSSMFNEFRASLCV 1268
>ref|XP_506588.1| PREDICTED P0597G07.109 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 296
Score = 385 bits (989), Expect = e-105
Identities = 184/291 (63%), Positives = 222/291 (76%), Gaps = 1/291 (0%)
Query: 48 DLGPLSYFLGIAVTRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTP 107
DLGP+ +FLGI V R A G FLSQ YA ++ RA +A C P+ TPVDTK K+SS++G P
Sbjct: 2 DLGPVHFFLGIQVRRTADGFFLSQEQYAGNVLDRASLADCKPAPTPVDTKAKVSSTTGQP 61
Query: 108 CEDATLYRSLAGALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYG 167
D T YRS+ GALQYLT TRPD+SYAVQQVCLHMH+P H +KR+LRYVRGT G
Sbjct: 62 YSDPTFYRSIVGALQYLTLTRPDLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKG 121
Query: 168 LHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEY 227
L L S L +Y+DADW GCPDTRRSTSG+CVF GD+L+SWSSKRQ +SRSSAEAEY
Sbjct: 122 LQLRRSSTPSLTAYSDADWAGCPDTRRSTSGFCVFFGDSLVSWSSKRQSIVSRSSAEAEY 181
Query: 228 RGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFV 287
RGVAN +E CW+ +LL +LH L +A LV+CDN+SA+YLS NPVHH R KH+E+D+HFV
Sbjct: 182 RGVANAAAECCWLHHLLGKLHVKLDKAMLVYCDNISAVYLSKNPVHHGRAKHVELDVHFV 241
Query: 288 REKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
EKVA G RV+H+P+R Q+ADI TKGLP LF+DFRSSL + + A TAG
Sbjct: 242 WEKVAVGDIRVVHIPTRQQLADIMTKGLPTALFEDFRSSLCIVD-DAPTAG 291
>gb|AAP52413.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531648|ref|NP_920126.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18652495|gb|AAL77129.1| Putative polyprotein [Oryza
sativa]
Length = 1264
Score = 341 bits (874), Expect = 2e-92
Identities = 188/338 (55%), Positives = 225/338 (65%), Gaps = 41/338 (12%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ G+ + Y+LLYVDDI+L ASS L + + L SEF+MKDLG L +FLGI V
Sbjct: 956 DTSLFIYHHGSHLVYLLLYVDDIVLTASSAGLLRWAIQALQSEFSMKDLGSLHHFLGITV 1015
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
T + GL LSQ Y+ E++ RAGM+ C P +TPVDT KLSSS G+P D T SLAGA
Sbjct: 1016 TGDSSGLLLSQHQYSIEVLERAGMSDCKPCSTPVDTNAKLSSSDGSPVVDPTDCHSLAGA 1075
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLTFTRPDISYAVQQVCLHMH P G+ + P +S
Sbjct: 1076 LHYLTFTRPDISYAVQQVCLHMHDP---------------------GIPIVP------LS 1108
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+DW GCPDTR+ST WS KRQ T+SRSS EAEYR VAN V+E+CW+
Sbjct: 1109 SGYSDWAGCPDTRKST-------------WSFKRQNTVSRSSDEAEYRVVANTVAETCWL 1155
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL EL P S+ATLV+CDNVSAIYLS NPV HQRTKH+E+D+HFV ++VA G RVLH
Sbjct: 1156 CQLLHEL-TPPSRATLVYCDNVSAIYLSTNPVQHQRTKHVEIDLHFVHDRVAAGSVRVLH 1214
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
VP+ Q ADIFTKGLP +F +FRSSL+V +TAG
Sbjct: 1215 VPTTSQYADIFTKGLPTSIFVEFRSSLNVRCTNVATAG 1252
>gb|AAX92854.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 336
Score = 333 bits (855), Expect = 3e-90
Identities = 180/323 (55%), Positives = 224/323 (68%), Gaps = 28/323 (8%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ RG+D+ YILLYVDDI+L ASS +L + +A L +EF+MKDLG L +FLGI+V
Sbjct: 38 DTSLFIYTRGSDVVYILLYVDDIVLTASSDSLLRWTIAALQAEFSMKDLGTLDHFLGISV 97
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R + ++LSQ Y +I+ RAGM+ C P +TPVDT KLS+ G D T +RSLAGA
Sbjct: 98 CRTSASMYLSQRQYILDILDRAGMSDCKPCSTPVDTNAKLSAVDGDSVADPTDFRSLAGA 157
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIA---K 177
LQYLTFT D+ T HML+ R V +T+G P A
Sbjct: 158 LQYLTFT--DL---------------TSHMLS----SRSVSTCMTHGSRTLPLSSAFFVD 196
Query: 178 LVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSES 237
LV+Y+DADW GCP+ RRSTSGY VFLGDNL+SWSSK Q TLSRSSA+A+YR VA E+
Sbjct: 197 LVAYSDADWAGCPNMRRSTSGYVVFLGDNLVSWSSKHQNTLSRSSAKAKYRAVA----ET 252
Query: 238 CWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQAR 297
CW+R LL ELH P S+AT+V+CDNV+A+YL NP HQRTKH+E+D+HFVR++V G R
Sbjct: 253 CWLRQLLNELHSPPSKATVVYCDNVNAVYLFTNPEQHQRTKHVEIDLHFVRDRVDAGVVR 312
Query: 298 VLHVPSRHQIADIFTKGLPRVLF 320
VLHVP+ Q ADIFTKGLP +F
Sbjct: 313 VLHVPTTSQYADIFTKGLPSSVF 335
>emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
gi|4539447|emb|CAB40035.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444419|pir||T04204
hypothetical protein T4F9.150 - Arabidopsis thaliana
Length = 1515
Score = 330 bits (845), Expect = 5e-89
Identities = 162/333 (48%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ +G D+ ++LLYVDD+IL ++ L + + +L++EF MKD+G L YFLGI
Sbjct: 1095 DPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQA 1154
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H GLFLSQ Y S+++ AGM+ C+ TP+ L + P + T +R LAG
Sbjct: 1155 HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLD--LLQGNNKPFPEPTYFRRLAGK 1212
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MHAP LKR+L Y++GT+T G++L + + L
Sbjct: 1213 LQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRC 1272
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC DTRRST G+C FLG N+ISWS+KR PT+S+SS EAEYR ++ SE WI
Sbjct: 1273 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1332
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL E+ P Q ++CDN+SA+YLS NP H R+KH ++D ++VRE+VA G V H
Sbjct: 1333 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1392
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P+ Q+ADIFTK LP+ F D R L V PP
Sbjct: 1393 IPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1425
>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
gi|7444456|pir||T01908 hypothetical protein T12H20.12 -
Arabidopsis thaliana
Length = 1392
Score = 330 bits (845), Expect = 5e-89
Identities = 162/333 (48%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ +G D+ ++LLYVDD+IL ++ L + + +L++EF MKD+G L YFLGI
Sbjct: 972 DPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQA 1031
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H GLFLSQ Y S+++ AGM+ C+ TP+ L + P + T +R LAG
Sbjct: 1032 HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLD--LLQGNNKPFPEPTYFRRLAGK 1089
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MHAP LKR+L Y++GT+T G++L + + L
Sbjct: 1090 LQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRC 1149
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC DTRRST G+C FLG N+ISWS+KR PT+S+SS EAEYR ++ SE WI
Sbjct: 1150 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1209
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL E+ P Q ++CDN+SA+YLS NP H R+KH ++D ++VRE+VA G V H
Sbjct: 1210 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1269
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P+ Q+ADIFTK LP+ F D R L V PP
Sbjct: 1270 IPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1302
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 327 bits (837), Expect = 4e-88
Identities = 165/339 (48%), Positives = 220/339 (64%), Gaps = 3/339 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + I Y+LLYVDDI+L S +L + + L + F+MKDLGP YFLGI +
Sbjct: 1035 DPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQI 1094
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+A GLFL Q+ YA++I+ +AGM+ CNP TP+ Q+L + + + T +RSLAG
Sbjct: 1095 EDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGK 1152
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV +C MH+P T LKR+LRY++GT+ GL + + L +
Sbjct: 1153 LQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSA 1212
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+D GC +TRRST+G+C+ LG NLISWS+KRQPT+S SS EAEYR + E WI
Sbjct: 1213 YSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWI 1272
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL +L P T V+CDN+SA+YLS NP H R+KH + D H++RE+VA G H
Sbjct: 1273 SFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQH 1332
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV-GEPPASTAG 338
+ + Q+AD+FTK LPR F D RS L V G P S G
Sbjct: 1333 ISATFQLADVFTKSLPRRAFVDLRSKLGVSGSPTPSLRG 1371
>gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T10728 probable
gag/pol polyprotein - long-staminate rice retrotransposon
retrofit
Length = 1445
Score = 326 bits (835), Expect = 7e-88
Identities = 158/331 (47%), Positives = 224/331 (66%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF +G + ++L+YVDDII+ +S+ + + L EFA+KDLG L YFLGI V
Sbjct: 1112 DTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEV 1171
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
T+ + G+ L+Q YA++++ R M++C P +TP+ +KL+ G+P DA YRS+
Sbjct: 1172 TKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIV 1231
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDI+Y+V +VC +HAP T H +A+KR+LRY+ + GLH++ S +
Sbjct: 1232 GALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLV 1291
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
Y+DADW G D R+ST G+ VFLG NL+SWS+++QPT+SRSS EAEY+ VAN +E
Sbjct: 1292 HGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELI 1351
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL EL +A + CDN+ A YLS NPV H RTKHIE+D HFVRE+V++ +
Sbjct: 1352 WVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEI 1411
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
VPS Q+AD FTK L L ++F+ +L++
Sbjct: 1412 DFVPSGDQVADGFTKALSACLLENFKHNLNL 1442
>gb|AAL66754.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 325 bits (833), Expect = 1e-87
Identities = 154/331 (46%), Positives = 230/331 (68%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF + +G+ ++L+YVDDII+ +S+H ++ ++ L EFA+KDLG L+YFLGI V
Sbjct: 980 DTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEV 1039
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
+ G+ L+Q YAS+++ + GM+ C P +TP+ T +KLS G+P +D T YRS+
Sbjct: 1040 NKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIV 1099
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDI+++V +VC +HAP T H A+KR+LRY++ GLH++ S +
Sbjct: 1100 GALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLV 1159
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
+++DADW G D R+ST G+ VFLG NL+SWS+++QPT+SRSS E+EY+ +AN +E
Sbjct: 1160 SAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELI 1219
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL E+ +A + CDN+ A YLS NP+ H RTKHIE+D HFVR++VA+ +
Sbjct: 1220 WVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDI 1279
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+VP+ Q+AD FTK L L ++F+ +L++
Sbjct: 1280 EYVPTGDQVADGFTKPLSVRLLENFKVNLNL 1310
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 323 bits (829), Expect = 3e-87
Identities = 163/335 (48%), Positives = 210/335 (62%), Gaps = 2/335 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + +LLYVDDI+L S L + L + F+MKDLGP YFLGI +
Sbjct: 1053 DPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEI 1112
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ GLFL Q YAS+I+ +AGM CNP TP+ Q L + P E+ T +RSLAG
Sbjct: 1113 ESYNNGLFLHQHAYASDILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGK 1170
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI YAV +C MHAP LKR+LRYV+GT+ GL + L
Sbjct: 1171 LQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSG 1230
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+ D+D+ GC DTRRST+G+C+ LG LISWS+KRQPT+S SS EAEYR +++ E WI
Sbjct: 1231 FCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWI 1290
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL +L Q T V CDN+SA+YLS NP H+R+KH + D H++RE+VA G H
Sbjct: 1291 SSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQH 1350
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
+P+ Q+AD+FTK LPR F R+ L V P S
Sbjct: 1351 IPATIQLADVFTKSLPRRPFITLRAKLGVSASPVS 1385
>ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 821
Score = 323 bits (829), Expect = 3e-87
Identities = 158/331 (47%), Positives = 225/331 (67%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF +++G ++L+YVDDII+ +S + + L+ +FA+KDLG L YFLGI V
Sbjct: 482 DTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEV 541
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
+ GL LSQ YAS+++ R GM C P +TP+ T +KLS + GT +D+T YRS+
Sbjct: 542 HKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVV 601
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDIS+++ +VC +HAP T H A+KR+LRYV+ T+ GL +P +
Sbjct: 602 GALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLV 661
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
++DADW G PD RRST G+ VFLG NL+SWS+++Q T+SRSS EAEY+ +AN +E
Sbjct: 662 SGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIM 721
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL EL +A + CDN+ A YLS NP+ H RTKHIE+D HFVRE+VAR +
Sbjct: 722 WVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEI 781
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
++ ++ Q+AD FTK +P + F+++L++
Sbjct: 782 AYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,116,011
Number of Sequences: 2540612
Number of extensions: 21276551
Number of successful extensions: 46154
Number of sequences better than 10.0: 860
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 44137
Number of HSP's gapped (non-prelim): 1073
length of query: 338
length of database: 863,360,394
effective HSP length: 128
effective length of query: 210
effective length of database: 538,162,058
effective search space: 113014032180
effective search space used: 113014032180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0343.1