BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.11
(137 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_483210.1| calcium-binding EF-hand family protein-like [Or... 137 4e-32
gb|AAM63727.1| unknown [Arabidopsis thaliana] gi|21387065|gb|AAM... 133 1e-30
gb|AAO37499.1| expressed protein [Oryza sativa (japonica cultiva... 102 3e-21
gb|AAP51875.1| unknown protein [Oryza sativa (japonica cultivar-... 73 1e-12
ref|NP_175855.1| calcium-binding EF hand family protein [Arabido... 57 7e-08
emb|CAB80544.1| EF-Hand containing protein-like [Arabidopsis tha... 50 1e-05
gb|AAP52416.1| putative calcium-binding protein [Oryza sativa (j... 49 3e-05
emb|CAA04670.1| 39 kDa EF-Hand containing protein [Solanum tuber... 48 6e-05
gb|EAA77148.1| hypothetical protein FG09591.1 [Gibberella zeae P... 44 6e-04
gb|EAA55899.1| hypothetical protein MG01550.4 [Magnaporthe grise... 42 0.004
dbj|BAB55793.1| NCS homolog [Magnaporthe grisea] 42 0.004
gb|EAL89260.1| calcium sensor (NCS-1), putative [Aspergillus fum... 41 0.007
emb|CAF06069.1| probable regulator of phosphatidylinositol-4-OH ... 41 0.007
gb|EAA62501.1| hypothetical protein AN5341.2 [Aspergillus nidula... 41 0.007
gb|AAT72746.1| NCS-1/frequenin-related protein [Dictyostelium di... 39 0.021
ref|NP_198235.1| calcium-binding EF hand family protein [Arabido... 39 0.035
emb|CAB79924.1| putative protein [Arabidopsis thaliana] gi|28276... 37 0.079
gb|AAK82907.2| Neuronal calcium sensor family protein 3 [Caenorh... 37 0.13
pir||T33465 hypothetical protein K03E6.3 - Caenorhabditis elegans 37 0.13
emb|CAA90589.1| SPAC18B11.04 [Schizosaccharomyces pombe] gi|1911... 36 0.18
>ref|XP_483210.1| calcium-binding EF-hand family protein-like [Oryza sativa (japonica
cultivar-group)] gi|42408129|dbj|BAD09268.1|
calcium-binding EF-hand family protein-like [Oryza
sativa (japonica cultivar-group)]
gi|42407770|dbj|BAD08916.1| calcium-binding EF-hand
family protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 135
Score = 137 bits (346), Expect = 4e-32
Identities = 71/134 (52%), Positives = 98/134 (72%), Gaps = 1/134 (0%)
Query: 1 MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFG 60
MSVEI+DG+T+ +F++DE AFN SV RFA LD ++DG+LSY +M EL LRVL+THFG
Sbjct: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFG 60
Query: 61 IDVKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMALEE 120
+D + G +Y+ LF +FD + +G V L EF+ E +E+ML +A+G+GFLPVQM +E+
Sbjct: 61 VDDGHGGADDG-LYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVED 119
Query: 121 DSILKRAVERECNK 134
S LK AV+RE K
Sbjct: 120 GSFLKVAVDRELAK 133
>gb|AAM63727.1| unknown [Arabidopsis thaliana] gi|21387065|gb|AAM47936.1| unknown
protein [Arabidopsis thaliana] gi|3128177|gb|AAC16081.1|
expressed protein [Arabidopsis thaliana]
gi|18252875|gb|AAL62364.1| unknown protein [Arabidopsis
thaliana] gi|7486422|pir||T02387 hypothetical protein
At2g44310 [imported] - Arabidopsis thaliana
gi|18406507|ref|NP_566015.1| calcium-binding EF hand
family protein [Arabidopsis thaliana]
Length = 142
Score = 133 bits (334), Expect = 1e-30
Identities = 65/137 (47%), Positives = 99/137 (71%), Gaps = 2/137 (1%)
Query: 1 MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFG 60
M V ++DG+T+ +F++DEE F SV RFA LD NKDG+LS E+ K + +R+LE+HFG
Sbjct: 1 MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60
Query: 61 IDVKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMAL-- 118
+DV DEL +Y S+F +FD + +GSVDLEEF+ E ++++LA+ADG+G P+ M L
Sbjct: 61 VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120
Query: 119 EEDSILKRAVERECNKV 135
++D+ LK+A + E +K+
Sbjct: 121 DDDNFLKKAADLEASKL 137
>gb|AAO37499.1| expressed protein [Oryza sativa (japonica cultivar-group)]
gi|50916487|ref|XP_468640.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 158
Score = 102 bits (253), Expect = 3e-21
Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 4/141 (2%)
Query: 1 MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLE-THF 59
MSV ILDG+T+ F+ D++AF SV RF LD N DG+LS E+ + L+ R+L+ F
Sbjct: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGF 60
Query: 60 G-IDVKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMAL 118
G + P P E+ +Y S+F QFD + +G+VD EF+ + R +MLA+ADG+G P+Q+A+
Sbjct: 61 GSAEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVADGLGSQPLQVAV 120
Query: 119 EED--SILKRAVERECNKVVA 137
+++ S L A E E + A
Sbjct: 121 DDEGGSFLLEAAEHEAASIAA 141
>gb|AAP51875.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|37530572|ref|NP_919588.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|17047026|gb|AAL34931.1| Unknown protein [Oryza
sativa]
Length = 89
Score = 73.2 bits (178), Expect = 1e-12
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 45 MLKELQCLRVLETHFGID-VKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMML 103
M EL LR+L+ HFG D DEL ++Y+ LF FD + +G+V+LEEF+ E +E++L
Sbjct: 1 MANELMSLRMLDKHFGDDEAVMSADELVKLYRGLFAWFDRDGSGAVELEEFRAEMKEVLL 60
Query: 104 AMADGMGFLPVQMALEE 120
A+A G+GFL VQM +E+
Sbjct: 61 AVASGLGFLLVQMVVED 77
>ref|NP_175855.1| calcium-binding EF hand family protein [Arabidopsis thaliana]
Length = 127
Score = 57.4 bits (137), Expect = 7e-08
Identities = 38/127 (29%), Positives = 68/127 (52%), Gaps = 9/127 (7%)
Query: 5 ILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVK 64
++ T++ FL D ++F + F +LD +K+G+LS E+ + L + +E+ +V
Sbjct: 5 VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 60
Query: 65 PDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMALEEDSIL 124
P DE VY ++F +F +L + F+ E++ AMA G+G PV M + D ++
Sbjct: 61 PG-DETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 115
Query: 125 KRAVERE 131
+AV E
Sbjct: 116 MKAVLHE 122
>emb|CAB80544.1| EF-Hand containing protein-like [Arabidopsis thaliana]
gi|4490333|emb|CAB38615.1| EF-Hand containing
protein-like [Arabidopsis thaliana]
gi|15810421|gb|AAL07098.1| putative EF-hand containing
protein [Arabidopsis thaliana]
gi|15234822|ref|NP_195592.1| calcium-binding EF hand
family protein [Arabidopsis thaliana]
gi|7488068|pir||T06080 probable calcium-binding protein
T9A14.90 - Arabidopsis thaliana
Length = 375
Score = 50.1 bits (118), Expect = 1e-05
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 4 EILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDV 63
++LDG+ IV +E+E+ F+ V +F LD ++DG LS E+ + + G+
Sbjct: 13 QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTEL---QPAVADIGAALGLPA 69
Query: 64 KPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
+ + +Y + +F H V EFK +++L MA G+ P+
Sbjct: 70 QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI 120
>gb|AAP52416.1| putative calcium-binding protein [Oryza sativa (japonica
cultivar-group)] gi|37531654|ref|NP_920129.1| putative
calcium-binding protein [Oryza sativa (japonica
cultivar-group)] gi|18652498|gb|AAL77132.1| Putative
calcium-binding protein [Oryza sativa]
Length = 417
Score = 48.5 bits (114), Expect = 3e-05
Identities = 31/111 (27%), Positives = 56/111 (49%), Gaps = 5/111 (4%)
Query: 5 ILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQ-CLRVLETHFGIDV 63
++DG+ I+ +E++EAF V +F LLD + DG LS ++ELQ + + G+
Sbjct: 26 VVDGSEILQLVENKEAFGKFVEQKFRLLDADGDGRLS----VRELQPAVADIGAAIGLPA 81
Query: 64 KPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
+ + +Y + +F SV EF+ +++L MA G+ P+
Sbjct: 82 RGSSAQADHIYSEVLNEFTKGKKESVSKSEFQRVLSDILLGMAAGLKRDPI 132
>emb|CAA04670.1| 39 kDa EF-Hand containing protein [Solanum tuberosum]
gi|7489250|pir||T07107 probable calcium-binding protein
(clone Y8) - potato
Length = 355
Score = 47.8 bits (112), Expect = 6e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 6 LDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKP 65
+DG+ I+ + +E F+ V ++F LD +KDG LS +E+ + + V G+ +
Sbjct: 1 MDGSDIMKLVGNEAVFSNFVDHKFQELDIDKDGKLSVKELQPAVADIGVA---LGLPPQG 57
Query: 66 DPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
E +Y + +F H V EFK +++L MA G+ P+
Sbjct: 58 SSPESDHIYSEVLQEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPI 106
>gb|EAA77148.1| hypothetical protein FG09591.1 [Gibberella zeae PH-1]
gi|46136151|ref|XP_389767.1| hypothetical protein
FG09591.1 [Gibberella zeae PH-1]
Length = 190
Score = 44.3 bits (103), Expect = 6e-04
Identities = 28/86 (32%), Positives = 46/86 (52%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG +SY+EMLK ++ + + + + D D + + +F D + NGS
Sbjct: 105 FQLYDIDGDGKISYDEMLKIVEAIYKMVGSM-VKLPEDEDTPEKRVRKIFRMMDKDENGS 163
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D+EEFK ET L++ DG+
Sbjct: 164 LDMEEFKEGSKRDETIVSALSLYDGL 189
>gb|EAA55899.1| hypothetical protein MG01550.4 [Magnaporthe grisea 70-15]
gi|20142118|dbj|BAB88922.1| neuronal calcium sensor 1
[Magnaporthe grisea] gi|39951815|ref|XP_363624.1|
hypothetical protein MG01550.4 [Magnaporthe grisea
70-15]
Length = 190
Score = 41.6 bits (96), Expect = 0.004
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG +SY+EML+ ++ + + + + D D + + +F D + NGS
Sbjct: 105 FQLYDIDGDGKISYDEMLQIVEAIYKMVGSM-VKLPEDEDTPEKRVRKIFRMMDKDENGS 163
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D++EFK ET L++ DG+
Sbjct: 164 LDMQEFKEGSKRDETIVSALSLYDGL 189
>dbj|BAB55793.1| NCS homolog [Magnaporthe grisea]
Length = 190
Score = 41.6 bits (96), Expect = 0.004
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG +SY+EML+ ++ + + + + D D + + +F D + NGS
Sbjct: 105 FQLYDIDGDGKISYDEMLQIVEAIYKMVGSM-VKLPEDEDTPEKRVRKIFRMMDKDENGS 163
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D++EFK ET L++ DG+
Sbjct: 164 LDMQEFKEGSKRGETIVSALSLYDGL 189
>gb|EAL89260.1| calcium sensor (NCS-1), putative [Aspergillus fumigatus Af293]
Length = 190
Score = 40.8 bits (94), Expect = 0.007
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG ++Y+EML ++ + + + + D D + + +F D + NGS
Sbjct: 105 FQLYDIDGDGKITYDEMLAIVEAIYKMVGSM-VKLPEDEDTPEKRVRKIFRMMDKDENGS 163
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D+EEFK ET L++ DG+
Sbjct: 164 LDMEEFKEGSKRDETIVSALSLYDGL 189
>emb|CAF06069.1| probable regulator of phosphatidylinositol-4-OH kinase protein
[Neurospora crassa] gi|32406238|ref|XP_323732.1|
hypothetical protein [Neurospora crassa]
gi|28918548|gb|EAA28220.1| hypothetical protein
[Neurospora crassa]
Length = 190
Score = 40.8 bits (94), Expect = 0.007
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG ++Y+EMLK ++ + + + + D D + +F D + NGS
Sbjct: 105 FQLYDIDGDGKITYDEMLKIVEAIYKMVGSM-VKLPEDEDTPEKRVSKIFRMMDKDENGS 163
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D++EFK ET L++ DG+
Sbjct: 164 LDMKEFKEGSQRDETIVSALSLYDGL 189
>gb|EAA62501.1| hypothetical protein AN5341.2 [Aspergillus nidulans FGSC A4]
gi|67538342|ref|XP_662945.1| hypothetical protein
AN5341_2 [Aspergillus nidulans FGSC A4]
gi|49096036|ref|XP_409478.1| hypothetical protein
AN5341.2 [Aspergillus nidulans FGSC A4]
Length = 189
Score = 40.8 bits (94), Expect = 0.007
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DG ++Y+EML ++ + + + + D D + + +F D + NGS
Sbjct: 104 FQLYDIDGDGKITYDEMLAIVEAIYKMVGSM-VKLPEDEDTPEKRVRKIFRMMDKDENGS 162
Query: 89 VDLEEFKM-----ETREMMLAMADGM 109
+D+EEFK ET L++ DG+
Sbjct: 163 LDMEEFKEGSKRDETIVSALSLYDGL 188
>gb|AAT72746.1| NCS-1/frequenin-related protein [Dictyostelium discoideum]
gi|66805595|ref|XP_636519.1| NCS-1/frequenin-like
protein [Dictyostelium discoideum]
gi|60464899|gb|EAL63014.1| NCS-1/frequenin-related
protein [Dictyostelium discoideum]
Length = 191
Score = 39.3 bits (90), Expect = 0.021
Identities = 32/111 (28%), Positives = 55/111 (48%), Gaps = 17/111 (15%)
Query: 1 MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFG 60
+S+E + F + ++A S+ + F + D++K+G +S++E + L F
Sbjct: 44 LSLEEFKSFFSIRFKDYDDA---SILHMFKIFDSDKNGRISFKEFVGAL---------FI 91
Query: 61 IDVKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGF 111
I P D+L LF FD +LNG +DLEE ++ L + G+GF
Sbjct: 92 ITKSPVSDKLS----FLFDMFDRDLNGYLDLEE-SYNILKLALNTSVGLGF 137
>ref|NP_198235.1| calcium-binding EF hand family protein [Arabidopsis thaliana]
Length = 324
Score = 38.5 bits (88), Expect = 0.035
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 3 VEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGID 62
V ILDG + FLEDE+ F + N F LD G L E+ K L H G++
Sbjct: 103 VSILDGTMLKMFLEDEDDFAMLAENLFTDLDEEDKGKLCKSEIRKAL-------VHMGVE 155
Query: 63 VKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMAL 118
+ P + + + D + + + +F ++++ +AD + P+ + L
Sbjct: 156 MGVPPLSEFPILDDIIKKHDADSDEELGQAQFAELLQQVLQEIADVLHEKPITIVL 211
>emb|CAB79924.1| putative protein [Arabidopsis thaliana] gi|2827631|emb|CAA16584.1|
putative protein [Arabidopsis thaliana]
gi|21689743|gb|AAM67515.1| unknown protein [Arabidopsis
thaliana] gi|18176110|gb|AAL59985.1| unknown protein
[Arabidopsis thaliana] gi|15236653|ref|NP_194934.1|
calcium-binding EF hand family protein [Arabidopsis
thaliana] gi|7485364|pir||T04640 hypothetical protein
F10N7.140 - Arabidopsis thaliana
Length = 498
Score = 37.4 bits (85), Expect = 0.079
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + DGL+S++E + + L + E+ F + K FD + NG
Sbjct: 218 FMLFDVDNDGLISFKEYIFFVTLLSIPESSFAVAFK---------------MFDTDNNGE 262
Query: 89 VDLEEFKMETREMMLAMADGMG 110
+D EEFK M G+G
Sbjct: 263 IDKEEFKTVMSLMRSQHRQGVG 284
>gb|AAK82907.2| Neuronal calcium sensor family protein 3 [Caenorhabditis elegans]
gi|25150298|ref|NP_508201.2| neuronal Calcium Sensor
(ncs-3) [Caenorhabditis elegans]
Length = 199
Score = 36.6 bits (83), Expect = 0.13
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F+L D +KDG ++ +EM + + + + +++ D D + + +F D NL+G
Sbjct: 115 FSLYDVDKDGFITKDEMADIVDAIYSMIGNM-LELPKDEDTPQKRVEKIFTNMDRNLDGQ 173
Query: 89 VDLEEFK 95
+ EEFK
Sbjct: 174 LTREEFK 180
>pir||T33465 hypothetical protein K03E6.3 - Caenorhabditis elegans
Length = 220
Score = 36.6 bits (83), Expect = 0.13
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F+L D +KDG ++ +EM + + + + +++ D D + + +F D NL+G
Sbjct: 136 FSLYDVDKDGFITKDEMADIVDAIYSMIGNM-LELPKDEDTPQKRVEKIFTNMDRNLDGQ 194
Query: 89 VDLEEFK 95
+ EEFK
Sbjct: 195 LTREEFK 201
>emb|CAA90589.1| SPAC18B11.04 [Schizosaccharomyces pombe]
gi|19113791|ref|NP_592879.1| hypothetical protein
SPAC18B11.04 [Schizosaccharomyces pombe 972h-]
gi|1171671|sp|Q09711|NCS1_SCHPO Neuronal calcium sensor
1 (NCS-1) gi|37903738|gb|AAP48992.1| neuronal calcium
sensor protein-like protein; Ncs1p [Schizosaccharomyces
pombe]
Length = 190
Score = 36.2 bits (82), Expect = 0.18
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 29 FALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQFDHNLNGS 88
F L D + +GL+SY+EML+ + + + + + D D + +F D N +G
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSM-VKLPEDEDTPEKRVNKIFNMMDKNKDGQ 163
Query: 89 VDLEEF 94
+ LEEF
Sbjct: 164 LTLEEF 169
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,321,572
Number of Sequences: 2540612
Number of extensions: 8705192
Number of successful extensions: 22821
Number of sequences better than 10.0: 307
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 22456
Number of HSP's gapped (non-prelim): 619
length of query: 137
length of database: 863,360,394
effective HSP length: 113
effective length of query: 24
effective length of database: 576,271,238
effective search space: 13830509712
effective search space used: 13830509712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0342b.11