BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.10
(1246 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 701 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 690 0.0
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 667 0.0
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 664 0.0
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 664 0.0
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 655 0.0
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 653 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 627 e-178
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 609 e-172
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 606 e-171
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 602 e-170
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 602 e-170
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 601 e-170
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 596 e-168
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 596 e-168
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 595 e-168
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 589 e-166
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 577 e-163
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 558 e-157
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 542 e-152
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 701 bits (1810), Expect = 0.0
Identities = 423/1262 (33%), Positives = 674/1262 (52%), Gaps = 40/1262 (3%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW GDFN++L E G+R ++ +Q FR + GL+D+ G +FTW +
Sbjct: 136 PWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANS 195
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPIL--LNPLSPSRSKTP----FKYE 120
++ +LDR +AN + F + +SDH I L+ + + + P F++E
Sbjct: 196 NSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFE 255
Query: 121 VFWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLK 180
W E + +V W + + + +Q +L K +F + ++I++++
Sbjct: 256 AAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKME 315
Query: 181 QEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHAST 240
+++ + + P + V ++I+ ++ L+ +EE+ QRSRV W + GD+N+ FFHA
Sbjct: 316 RKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARA 375
Query: 241 IQRRNRNRI-DRVRD--SLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKV 297
RR NRI + VRD S I +EG + F YE++F +E +EE L P KV
Sbjct: 376 SARRRTNRIKELVRDDGSRCISQEGIKRMAEVF---YENLFSSEPCDSMEEVLDAIPNKV 432
Query: 298 TQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFL 357
+N +L ++ EI A+ ++G KAPGPDG LF++ HWG +++ +C A++ F L
Sbjct: 433 GDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLL 492
Query: 358 SENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPN 417
E + + +++V LIPKV++ + +FRPIS CN + K+ S+++ RLK L ++S
Sbjct: 493 GEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEF 552
Query: 418 QSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKN-YMALKVDMSKAYDRLEWTFIERTLLA 476
QSAFV GRLI D+ +VA E H + K Q +KN + ALK+DM KAYDR+EW ++ L
Sbjct: 553 QSAFVPGRLITDSALVAYECLHTIRK--QHNKNPFFALKIDMMKAYDRVEWAYLSGCLSK 610
Query: 477 YGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFML 536
GF WI+ V+ V Y +K+NG L+ ++P RG+RQGDP+SPYLF+L T+ LS +L
Sbjct: 611 LGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLL 670
Query: 537 SQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKIN 596
+ + G+ G++ P ++HL FADDS+ FA+A R ++ L Y ASGQKIN
Sbjct: 671 HKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKIN 730
Query: 597 VAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEK 656
+ KS + FGK P K + + L + YLG+P G ++ ++ E++ ++
Sbjct: 731 LHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKR 790
Query: 657 LEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRG 716
+ GW + L++AG E ++KA+ QAIP+Y M+ P + C + +A+ WW + +
Sbjct: 791 VNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKK 850
Query: 717 IHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSF 776
+HW+SW ++ K GGMGFR+ T N A L RQ WR+LT+P++L RV+K YFPN+SF
Sbjct: 851 MHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSF 910
Query: 777 MFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSS-GEALVKPIN--A 833
AA ++PS+ WRSLL GR+ +++ RW VGDGK+++++ DNW+ LV ++
Sbjct: 911 WEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFP 970
Query: 834 ADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVN 893
D VS L++ + W+ +LI+ LF ++A +ILQ P+S+ AD WPH G Y+V
Sbjct: 971 TDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVR 1030
Query: 894 SGFRVARNNTIITQTHSSSSHVISEDL-----WNTIWSSHVPQKVKVFLWKASHNSLAVK 948
S + +AR+ +S + S L W +W + P K+K+ LW+A+H LA
Sbjct: 1031 SAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATG 1090
Query: 949 YNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTL--EGMGPFDSW 1006
+ L R+ I + C V C+ +TVEH+FL CP+ +W + V L G W
Sbjct: 1091 FQLRRRHIPSTDGC-VFCNRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQW 1149
Query: 1007 LLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMD 1066
+ LKR S + +LLA W IW RNN+ P+ + ++LS +D
Sbjct: 1150 IFD---FLKRGSSHAN---TLLAVTFWHIWEARNNTKNNNGTVHPQRVV---IKILSYVD 1200
Query: 1067 LAKPVKEDRIIESIQSQRTRA-SDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYST 1125
+ + ++ + T+A W PP + IN DA+ + +G LIRD
Sbjct: 1201 MILK-HNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGK 1259
Query: 1126 LLSGTHAKIY-CSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANAL-IGE 1183
L I P AEA AIR L LA G +V+ SD +++ + +
Sbjct: 1260 CLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSG 1319
Query: 1184 ASTILQDIFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWNWLFMPPQELRRALV 1243
+++DI L F C+F+ NR N +AH +A+ S + + + P +R L
Sbjct: 1320 VGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELSTCT-VYRSVIPDYIRDILC 1378
Query: 1244 DD 1245
DD
Sbjct: 1379 DD 1380
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 690 bits (1780), Expect = 0.0
Identities = 405/1245 (32%), Positives = 656/1245 (52%), Gaps = 34/1245 (2%)
Query: 3 SEATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNP 62
S + PW L GDFN+++ EK G + S FR+ ++ GL +V G +F+W N
Sbjct: 126 SRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNR 185
Query: 63 RDGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPS-RSKTPFKYEV 121
D V + +LDR +AN AW +LFP A A ++ SDHSP++ N + + R FKY+
Sbjct: 186 NDELV-QCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDK 244
Query: 122 FWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQ 181
W + E K ++ W++ + + + +I S ++ + S KR + + VR+++
Sbjct: 245 RWVQREGFKDLLCNFWSQQSTKTNAL--MMEKIASCRREI-SKWKRVSKPSSA--VRIQE 299
Query: 182 EMHRMEERPNHL-VDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHAST 240
+++ + D + +K ++ + EE +W ++SR+ W + GD+N+K+FHA+T
Sbjct: 300 LQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAAT 359
Query: 241 IQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQ 300
RR +NRI ++ D G D+ ++++ +F +E V E L N V+ Q
Sbjct: 360 KNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQ 419
Query: 301 LNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSEN 360
+NN L+ ++ E+ A + K PGPDG+NG ++ W + D + ++ FF S +
Sbjct: 420 MNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGS 479
Query: 361 LSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSA 420
+ +N+T + LIPK+ E + FRPIS CN I KVI ++M RLK+ L SLIS Q+A
Sbjct: 480 IEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAA 539
Query: 421 FVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFH 480
FV GRLI DNI++A E H L + S+ ++A+K D+SKAYDR+EW F+E+ + GF
Sbjct: 540 FVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFA 599
Query: 481 PTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQ 540
WI ++ V+ Y++ +NG +IP RGLRQGDPLSPYLFV+ T++L ML A+
Sbjct: 600 DHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAE 659
Query: 541 QEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKS 600
Q+ + GL+ +P ++HL FADDS+ + + + II+++ Y+ ASGQ++N KS
Sbjct: 660 QKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKS 719
Query: 601 GLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGW 660
+ FGK + + L + G YLGLP + +K +L ++++++ +K+ GW
Sbjct: 720 SIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGW 779
Query: 661 KETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWR 720
+ L+ GKE+L+KA+ A+P+Y M+ PKT C + +++A FWWK++ + RG+HW+
Sbjct: 780 QSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWK 839
Query: 721 SWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAA 780
+W ++ K GG+GF+++ N+A L +Q WR++T ++L +V KS YF + + A
Sbjct: 840 AWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAP 899
Query: 781 LGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEA----------LVKP 830
LG PS+ W+S+ + I + R V+G+G+++ VW D W+ + A LV
Sbjct: 900 LGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQ 959
Query: 831 INAADLK-VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGD 889
A + V DL+ P+G WN NL+ LF IL D W ++ G
Sbjct: 960 YAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGH 1019
Query: 890 YTVNSGFRVARNNTIITQTHSSSSHVIS---EDLWNTIWSSHVPQKVKVFLWKASHNSLA 946
Y+V SG+ V T I ++ V+ + ++ IW VP K+ FLW+ +N L+
Sbjct: 1020 YSVKSGYWVM---TEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLS 1076
Query: 947 VKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSW 1006
V NL + ++ C C ETV HL CP+ R W S L E
Sbjct: 1077 VASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRN 1136
Query: 1007 LLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQA-TRLLSTM 1065
+ +++ K ++ D +L+ +LW +W+ RN+ VFK EFT Q + M
Sbjct: 1137 MHHVLSVHKSQPEESDHH-ALIPWILWRLWKNRNDLVFKG----REFTAPQVILKATEDM 1191
Query: 1066 DLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYST 1125
D KE + + S R R W PP +K N D +W ++L +G ++R+
Sbjct: 1192 DAWNNRKEPQ-PQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGR 1250
Query: 1126 LL-SGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEA 1184
LL G A S L E A+R + V+ ESD++ LV + I
Sbjct: 1251 LLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPSL 1310
Query: 1185 STILQDIFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWN 1229
+ +QDI L R F F +T RE N A A+ + SL++++
Sbjct: 1311 APRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESL-SLMNYD 1354
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 667 bits (1722), Expect = 0.0
Identities = 411/1251 (32%), Positives = 641/1251 (50%), Gaps = 54/1251 (4%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW + GDFN+IL +EK+G R ++ LQ F ++C + D+ KGN ++W R
Sbjct: 492 PWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGK-RQNE 550
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKT-PFKYEVFWDE 125
LDRV N W+ FP P SDH+P++++ +K F+Y+ +
Sbjct: 551 TIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQFRYDRRHFQ 610
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
E V +GWNR D ++ +Q L ++RT ++I LK +
Sbjct: 611 FEDFVDSVQRGWNRG--RSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDA 668
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E +H + + ++ ++ +R EELYW +SR +W GD+N+ FF+AST R++
Sbjct: 669 AER--DHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKS 726
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHY-EDIFHTEGVSQIEECLHNFPKKVTQQLNNK 304
RNRI + D+ GI + + D +G +Y D+F T S EE + KVT+Q+N++
Sbjct: 727 RNRIKAITDAQGI-ENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHE 785
Query: 305 LILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSE 364
L+ +V+D E+ +AV +G +APG DG F+ + W I + VC ++ FF S+ + ++
Sbjct: 786 LLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQ 845
Query: 365 INETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGG 424
IN+T + LIPK+ P+ + +RPIS C K+IS+I++ RLK+ L +IS +Q+AFV G
Sbjct: 846 INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 905
Query: 425 RLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWI 484
+ I DN++VA E H L + Y+A+K D+SKAYDR+EW F+E+ ++ GF P W+
Sbjct: 906 QNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 965
Query: 485 DRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGK 544
++T V +Y + +NG + P RG+RQGDPLSPYLF+ +VLS ML +A+ +
Sbjct: 966 KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQ 1025
Query: 545 FFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIF 604
G++ T + A++HL FADDSL F AS + + + Y ASGQKIN AKS +IF
Sbjct: 1026 IHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIF 1085
Query: 605 GKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETL 664
G+ P ++ + LL + G YLGLP GR K +I KVKE+ EGW
Sbjct: 1086 GQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNY 1145
Query: 665 LNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDK 724
L+ AGKE++IKAI A+P Y+M P CN +N+L+ FWW GK+
Sbjct: 1146 LSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWW---GKE---------- 1192
Query: 725 MTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRN 784
+G +GF+DL N A LA+QAWR+LTNP++L R+ K LY+PNT+++ A G +
Sbjct: 1193 -----NEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGH 1247
Query: 785 PSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSS--GEALVKPINAADLKVSDLI 842
S+ W S+ G+ + + R +GDG++ ++W D WL + PI D+KV+DL
Sbjct: 1248 ASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLW 1307
Query: 843 SPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNN 902
N W+ + +G+ PE +S + D W +T YTV SG+ VA
Sbjct: 1308 RENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVA--- 1364
Query: 903 TIITQTHSSSSHVISED--LWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSG 960
T + T + + D L IW + K+K F+W+ +L+ L + I
Sbjct: 1365 THVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADP 1424
Query: 961 QCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQD 1020
C CC++ ET+ H+ C + + VW ++ L F L + I ++ L
Sbjct: 1425 TCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRL----CFTDNLEENIRLI--LQGK 1478
Query: 1021 FDREFSLLASL-----LWSIWRGRNNSVFKAICPDP----EFTIQQATRLLSTMDLAKPV 1071
++ +L L +W +W+ RN +F+ + P + Q+AT + TM +
Sbjct: 1479 KNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAI 1538
Query: 1072 KEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTH 1131
+ +S +R+ W P LK N D+ +V+ + G ++RD +L
Sbjct: 1539 SHN-TAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGC 1597
Query: 1132 AKIYCS-SPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQD 1190
AK+ S S L AEA L + + G V E DN L T+L D
Sbjct: 1598 AKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLLETLLYD 1657
Query: 1191 I-FCLKRL-FHGCNFVWTNRERNKSAHLVAKACMQSLLSWNWLFMPPQELR 1239
I F + +L F +V NRERN +A + K + +PP+ L+
Sbjct: 1658 IRFWMTKLPFSSIGYV--NRERNLAADKLTKYANSMSSLYETFHVPPRWLQ 1706
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 664 bits (1712), Expect = 0.0
Identities = 401/1200 (33%), Positives = 613/1200 (50%), Gaps = 36/1200 (3%)
Query: 5 ATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRD 64
A WCLIGDFNDI EK G ++PS Q F + + ++ GN FTW N D
Sbjct: 106 AEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND 165
Query: 65 GFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFW 123
+V + KLDR N AW +FPNA + SDH P+L+ + + + F+Y+
Sbjct: 166 QWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRL 224
Query: 124 DEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQ-NLWS*QKRTFRAADKEIVRLKQE 182
D+ C ++ + WN + + + I+ + ++W T A I RL+++
Sbjct: 225 DDDPYCIEVIHRSWNS-AMSQGTHSSFFSLIECRRAISVWKHSSDT--NAQSRIKRLRKD 281
Query: 183 MHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQ 242
+ E+ + W + IK ++ + EEL+W Q+SR KW GDKN+ FFHA+
Sbjct: 282 LDA--EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHS 339
Query: 243 RRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
R +N + + D SD S +E++F + + L KVT ++N
Sbjct: 340 ERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMN 399
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+ LI V++LE+ AV + APGPDG LFF+ HW +K + I FF + L
Sbjct: 400 HNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLP 459
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
+ N T + LIPK+ SP+ + RPIS C+ + K+IS+I+ RLK+ L +++S QSAFV
Sbjct: 460 QDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFV 519
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
RLI DNI+VA E H L + SK +MA K DMSKAYDR+EW F+E + A GF+
Sbjct: 520 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 579
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
WI ++ V +Y + +NG +IP RG+RQGDPLSP LFVL T+ L +L++A+Q
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 639
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
GK G++F + ++ HL FADD+LL +A+ +E ++Q L+ Y + SGQ IN+ KS +
Sbjct: 640 GKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 699
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
FGK + K I + + + G YLGLP +K +I+EK++ +L GW
Sbjct: 700 TFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYA 759
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
L+Q GKEVL+K+I A+P Y M+ PK C L ++ +FWW S + R IHW SW
Sbjct: 760 KTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSW 819
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALG 782
++TL K++GG GF+DL+ N A LA+QAWRVL +L+ RV +S YF N+ F+ A G
Sbjct: 820 QRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRG 879
Query: 783 RNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA-----ADLK 837
PS+ WRS+L GR+ + + R V+G+G+ VW D WL G +P+N DLK
Sbjct: 880 SRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNR-RPLNRRRFINVDLK 938
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
VS LI P WN N+++ LF P ++I+ F + D W H+ G Y+V +G+
Sbjct: 939 VSQLIDPTSRNWNLNMLRDLF-PWKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYE 997
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+ L++ IW+ H K+++FLWKA H ++ V+ L + I
Sbjct: 998 FLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR 1057
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMG-PFDSWLLQRITILKR 1016
C +C ET+ H+ CP R VW I L G F + + ++ L
Sbjct: 1058 SDDGCLMCDTENETINHILFECPLARQVWA------ITHLSSAGSEFSNSVYTNMSRLID 1111
Query: 1017 LSQDFDREFSL---LASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKE 1073
L+Q D L +LW +W+ RN +F+ + +A A+ +
Sbjct: 1112 LTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQ 1171
Query: 1074 DRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKY-STLLSGTHA 1132
+ + + + W PP LK N+ +W + + ++RD LL +
Sbjct: 1172 N------DEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRS 1225
Query: 1133 KIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEAC----KANALIGEASTIL 1188
SP +A+ + L + V+ S +++A + L+G+ S +L
Sbjct: 1226 FNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELL 1285
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 664 bits (1712), Expect = 0.0
Identities = 401/1200 (33%), Positives = 613/1200 (50%), Gaps = 36/1200 (3%)
Query: 5 ATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRD 64
A WCLIGDFNDI EK G ++PS Q F + + ++ GN FTW N D
Sbjct: 127 AEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND 186
Query: 65 GFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFW 123
+V + KLDR N AW +FPNA + SDH P+L+ + + + F+Y+
Sbjct: 187 QWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRL 245
Query: 124 DEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQ-NLWS*QKRTFRAADKEIVRLKQE 182
D+ C ++ + WN + + + I+ + ++W T A I RL+++
Sbjct: 246 DDDPYCIEVIHRSWNS-AMSQGTHSSFFSLIECRRAISVWKHSSDT--NAQSRIKRLRKD 302
Query: 183 MHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQ 242
+ E+ + W + IK ++ + EEL+W Q+SR KW GDKN+ FFHA+
Sbjct: 303 LDA--EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHS 360
Query: 243 RRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
R +N + + D SD S +E++F + + L KVT ++N
Sbjct: 361 ERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMN 420
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+ LI V++LE+ AV + APGPDG LFF+ HW +K + I FF + L
Sbjct: 421 HNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLP 480
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
+ N T + LIPK+ SP+ + RPIS C+ + K+IS+I+ RLK+ L +++S QSAFV
Sbjct: 481 QDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFV 540
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
RLI DNI+VA E H L + SK +MA K DMSKAYDR+EW F+E + A GF+
Sbjct: 541 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 600
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
WI ++ V +Y + +NG +IP RG+RQGDPLSP LFVL T+ L +L++A+Q
Sbjct: 601 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 660
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
GK G++F + ++ HL FADD+LL +A+ +E ++Q L+ Y + SGQ IN+ KS +
Sbjct: 661 GKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 720
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
FGK + K I + + + G YLGLP +K +I+EK++ +L GW
Sbjct: 721 TFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYA 780
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
L+Q GKEVL+K+I A+P Y M+ PK C L ++ +FWW S + R IHW SW
Sbjct: 781 KTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSW 840
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALG 782
++TL K++GG GF+DL+ N A LA+QAWRVL +L+ RV +S YF N+ F+ A G
Sbjct: 841 QRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRG 900
Query: 783 RNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA-----ADLK 837
PS+ WRS+L GR+ + + R V+G+G+ VW D WL G +P+N DLK
Sbjct: 901 SRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNR-RPLNRRRFINVDLK 959
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
VS LI P WN N+++ LF P ++I+ F + D W H+ G Y+V +G+
Sbjct: 960 VSQLIDPTSRNWNLNMLRDLF-PWKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYE 1018
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+ L++ IW+ H K+++FLWKA H ++ V+ L + I
Sbjct: 1019 FLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR 1078
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMG-PFDSWLLQRITILKR 1016
C +C ET+ H+ CP R VW I L G F + + ++ L
Sbjct: 1079 SDDGCLMCDTENETINHILFECPLARQVWA------ITHLSSAGSEFSNSVYTNMSRLID 1132
Query: 1017 LSQDFDREFSL---LASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKE 1073
L+Q D L +LW +W+ RN +F+ + +A A+ +
Sbjct: 1133 LTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQ 1192
Query: 1074 DRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKY-STLLSGTHA 1132
+ + + + W PP LK N+ +W + + ++RD LL +
Sbjct: 1193 N------DEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRS 1246
Query: 1133 KIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEAC----KANALIGEASTIL 1188
SP +A+ + L + V+ S +++A + L+G+ S +L
Sbjct: 1247 FNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELL 1306
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 655 bits (1689), Expect = 0.0
Identities = 399/1222 (32%), Positives = 628/1222 (50%), Gaps = 21/1222 (1%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
W L+GDFN+IL EK G + + FR V + D+ KG+RF+W R
Sbjct: 286 WLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHT 344
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILL--NPLSPSRSKTPFKYEVFWDE 125
+ LDRV N AW FP A SDH P+L+ N P RSK F+++ +
Sbjct: 345 VKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLID 403
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K IV W T + ++ RI S +Q + + + +++ I +L+ ++R
Sbjct: 404 IPTFKRIVQTSWR--TNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNR 461
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E VD + ++ + + EE+YW Q+SR +W K GD+N+ +FHA T R +
Sbjct: 462 AMESTRR-VDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYS 520
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKL 305
+NR++ + D G G ++ + +IF T G+ +F VT +N L
Sbjct: 521 QNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDL 580
Query: 306 ILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEI 365
SD EI +A+ ++G KAPGPDGL F+KN W + V +K+FF + + I
Sbjct: 581 TKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSI 640
Query: 366 NETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGR 425
N T + +IPK+ +P ++ +RPI+ CN + KVIS+ +V RLK L+S++S +Q+AF+ GR
Sbjct: 641 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 700
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWID 485
+I DN+++A E H L + SK YMA+K D+SKAYDR+EW F+E T+ +GF WI
Sbjct: 701 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 760
Query: 486 RVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKF 545
++ V+ Y + +NG + P RG+RQGDPLSPYLF+L D+LS +++ G
Sbjct: 761 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 820
Query: 546 FGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFG 605
G+R +PA+THL FADDSL F +A+VR ++ V ++Y SGQKINV KS + FG
Sbjct: 821 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 880
Query: 606 KLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
+ + +L +P G YLGLP +GR K +I ++VK++ W L
Sbjct: 881 SRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 940
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ AGKE+++K++ A+P YAM+ PK + + +L+ NFWW+ RGI W +W ++
Sbjct: 941 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1000
Query: 726 TLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNP 785
SK++GG+GFRDL N A LA+QAWR++ P +L+ RVMK+ YF + S + A + +
Sbjct: 1001 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQ 1060
Query: 786 SWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA----ADLKVSDL 841
S+ W SLL G + + +R ++GDG+++++ DN + S +P+N ++ +++L
Sbjct: 1061 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPP--RPLNTEETYKEMTINNL 1118
Query: 842 ISPNGE--GWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVA 899
G W+D+ I I + ++K + D I W + G+YTV SG+ +
Sbjct: 1119 FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL 1178
Query: 900 RNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPS 959
++ + H S DL IW+ + K+K FLW+A +LA L + +
Sbjct: 1179 THDPSTNIPAINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1237
Query: 960 GQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQ 1019
CP C E++ H CP+ W+ S I F+ + + ++ +
Sbjct: 1238 PICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTM 1297
Query: 1020 DFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIES 1079
D L L+W IW+ RNN VF P T+ A T D + + S
Sbjct: 1298 S-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAK--AETHDWLNATQSHKKTPS 1354
Query: 1080 IQSQ-RTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLS-GTHAKIYCS 1137
Q +W P +K N DA + +A G +IR+ Y T +S G+ + S
Sbjct: 1355 PTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS 1414
Query: 1138 SPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLKRL 1197
+PL AE A+ L + G T+V +E D ++L+ + + L+DI
Sbjct: 1415 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANK 1474
Query: 1198 FHGCNFVWTNRERNKSAHLVAK 1219
F F + R+ NK AH++AK
Sbjct: 1475 FASIQFGFIRRKGNKLAHVLAK 1496
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 653 bits (1684), Expect = 0.0
Identities = 402/1224 (32%), Positives = 630/1224 (50%), Gaps = 25/1224 (2%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
W L+GDFN+IL EK G + + FR V + D+ KG+RF+W R
Sbjct: 512 WLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHT 570
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILL--NPLSPSRSKTPFKYEVFWDE 125
+ LDRV N AW FP A SDH P+L+ N P RSK F+++ +
Sbjct: 571 VKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLID 629
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K IV W T + ++ RI S +Q + + + +++ I +L+ ++R
Sbjct: 630 IPTFKRIVQTSWR--TNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNR 687
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E VD + ++ + + EE+YW Q+SR +W K GD+N+ +FHA T R +
Sbjct: 688 AMESTRR-VDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYS 746
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKL 305
+NR++ + D G G ++ + +IF T G+ +F VT +N L
Sbjct: 747 QNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDL 806
Query: 306 ILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEI 365
SD EI +A+ ++G KAPGPDGL F+KN W + V +K+FF + + I
Sbjct: 807 TKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSI 866
Query: 366 NETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGR 425
N T + +IPK+ +P ++ +RPI+ CN + KVIS+ +V RLK L+S++S +Q+AF+ GR
Sbjct: 867 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 926
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWID 485
+I DN+++A E H L + SK YMA+K D+SKAYDR+EW F+E T+ +GF WI
Sbjct: 927 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 986
Query: 486 RVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKF 545
++ V+ Y + +NG + P RG+RQGDPLSPYLF+L D+LS +++ G
Sbjct: 987 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 1046
Query: 546 FGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFG 605
G+R +PA+THL FADDSL F +A+VR ++ V ++Y SGQKINV KS + FG
Sbjct: 1047 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 1106
Query: 606 KLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
+ + +L +P G YLGLP +GR K +I ++VK++ W L
Sbjct: 1107 SRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 1166
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ AGKE+++K++ A+P YAM+ PK + + +L+ NFWW+ RGI W +W ++
Sbjct: 1167 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1226
Query: 726 TLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNP 785
SK++GG+GFRDL N A LA+QAWR++ P +L+ RVMK+ YF + S + A + +
Sbjct: 1227 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQ 1286
Query: 786 SWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA----ADLKVSDL 841
S+ W SLL G + + +R ++GDG+++++ DN + S +P+N ++ +++L
Sbjct: 1287 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPP--RPLNTEETYKEMTINNL 1344
Query: 842 ISPNGE--GWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVA 899
G W+D+ I I + ++K + D I W + G+YTV SG+ +
Sbjct: 1345 FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL 1404
Query: 900 RNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRK--RIS 957
++ + H S DL IW+ + K+K FLW+A +LA L + RI
Sbjct: 1405 THDPSTNIPAINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1463
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
PS CP C E++ H CP+ W S I F+ + + ++
Sbjct: 1464 PS--CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDT 1521
Query: 1018 SQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRII 1077
+ D L L+W IW+ RNN VF P T+ A T D + +
Sbjct: 1522 TMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAK--AETHDWLNATQSHKKT 1578
Query: 1078 ESIQSQ-RTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLS-GTHAKIY 1135
S Q +W P +K N DA + +A G +IR+ Y T +S G+ +
Sbjct: 1579 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 1638
Query: 1136 CSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLK 1195
S+PL AE A+ L + G T+V +E D ++L+ + + L+DI
Sbjct: 1639 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWA 1698
Query: 1196 RLFHGCNFVWTNRERNKSAHLVAK 1219
F F + ++ NK AH++AK
Sbjct: 1699 NKFASIQFGFIRKKGNKLAHVLAK 1722
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 627 bits (1617), Expect = e-178
Identities = 390/1216 (32%), Positives = 618/1216 (50%), Gaps = 46/1216 (3%)
Query: 3 SEATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNP 62
S + PW +IGDFN+ ++ E P+ +Q FR+ + L D+ KG T+ N
Sbjct: 857 SSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYD-NK 915
Query: 63 RDGFVT-REKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKTPFK--- 118
R+G+ + +LDRV+A+ WRD++ A + SDH PILLN + + K
Sbjct: 916 REGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLH 975
Query: 119 YEVFWDEHEQCKGIVTQGW----NRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADK 174
YE+ W+ + ++ + W + L D IN + + WS RA K
Sbjct: 976 YEIVWEREPEATQVIEEAWVVAGEKADLGD---INKALAKVMTALRSWS------RAKVK 1026
Query: 175 EIVR-LKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNS 233
+ R L++ ++ E D +R ++ L +EE+ W QRSRV W K D+N+
Sbjct: 1027 NVGRELEKARKKLAELIESNADRTVIRNATDHMNELLYREEMLWLQRSRVNWLKDEDRNT 1086
Query: 234 KFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNF 293
KFFH+ + R +N+I ++RD+ + +++D++ + E
Sbjct: 1087 KFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETVTRLI 1146
Query: 294 PKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIK 353
+KVT +N KL ++ EI++A+ ++G LK+PGPDG F++ +WG IK + A++
Sbjct: 1147 QEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVR 1206
Query: 354 EFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSL 413
FF + + +N+T + LIPK + P + FRPIS CN + KV+S+ +V RL+ LD L
Sbjct: 1207 RFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDL 1266
Query: 414 ISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERT 473
+S QSAFV GR+I DN ++A E FH + K +++ A K+D+SKAYDR++W F+E
Sbjct: 1267 VSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMA 1326
Query: 474 LLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLS 533
+ GF W++ ++ V Y +K NG L S P RGLRQGDPL P+LF+ D LS
Sbjct: 1327 MNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLS 1386
Query: 534 FMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQ 593
+L + + + +P ++HL FADD+LLF +A REA + +VL+ Y +GQ
Sbjct: 1387 LLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQ 1446
Query: 594 KINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKV 653
IN AK ++ G + I+ +L + YLG P GR ++ K+
Sbjct: 1447 LINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKI 1506
Query: 654 KEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGK 713
+++ W E L+ GKEVLIKA+IQAIP Y M I P++ + L L NFWW S
Sbjct: 1507 WKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNG 1566
Query: 714 DRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPN 773
R HW++WD +T K GG+GFRD R N A LARQAWR++T P++L RV+K+ YFP+
Sbjct: 1567 QRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPH 1626
Query: 774 TSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWL---SSGEALVKP 830
S + + G N S WRS+ G D + + W VG+G S+++W D+WL S +
Sbjct: 1627 GSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGK 1686
Query: 831 INAADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDY 890
N VSDLI+ +G W+ I F A IL +S ++ D I W G +
Sbjct: 1687 ANCRLKWVSDLITEDG-SWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMF 1745
Query: 891 TVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYN 950
+V S +R+A I ++ SS ++ I++ W IW VPQKVK+F W+ + N LA N
Sbjct: 1746 SVRSAYRLAAQLVNIEESSSSGTNNINK-AWEMIWKCKVPQKVKIFAWRVASNCLATMVN 1804
Query: 951 LWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQR 1010
++++ S C +C E H C +W V+++ + +L R
Sbjct: 1805 KKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVD----IKASVLGR 1860
Query: 1011 ITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFT---IQQATRLLSTMDL 1067
+ L + + E ++ LW W RN + P E + IQ LL +
Sbjct: 1861 FWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQ 1920
Query: 1068 AKP---VKEDRIIESIQSQ--------RTRASDWIPPEGNSLKINVDASWVENLPQAALG 1116
A VK ++ ++ + W P+ +K+NVD S+ + + LG
Sbjct: 1921 APQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLG 1980
Query: 1117 VLIRDKYSTLLSGTHAKI-YCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEAC 1175
+++R+ ++ + + C++PL +E A EGL LA + + +E+D S+V+
Sbjct: 1981 MILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLL 2040
Query: 1176 KANALIGEASTILQDI 1191
+ IG ++L +I
Sbjct: 2041 QG---IGRDFSVLANI 2053
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 609 bits (1570), Expect = e-172
Identities = 395/1234 (32%), Positives = 611/1234 (49%), Gaps = 48/1234 (3%)
Query: 5 ATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRD 64
++ W L GDFNDIL EK+G + FR FV +GL D+ GN +W+
Sbjct: 72 SSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYS 131
Query: 65 GFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSP--SRSKTPFKYEVF 122
F+ + +LDR L N +W +LFP + SDH P++ +P RSK PF+++
Sbjct: 132 HFI-KSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSK-PFRFDRR 189
Query: 123 WDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQE 182
E E+ + +V + W + +I +Q++ K + K I + +Q
Sbjct: 190 LREKEEIRALVKEVWELARQDSVLY-----KISRCRQSIIKWTKEQNSNSAKAIKKAQQA 244
Query: 183 MHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQ 242
+ + D + + I +++ +RQEEL+W Q SRV+W GD+N +FHA+T
Sbjct: 245 LESALSAD--IPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRT 302
Query: 243 RRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
RR N + + D G + + S++++IF T S ++ ++ N
Sbjct: 303 RRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCN 362
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+LI S LEI EA+ + KAPGPDG + FF +W I+ V I+ FF+ LS
Sbjct: 363 EELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLS 422
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
+NET V LIPK+ +P V +RPI+ CN K++++I+ RL+ L LIS +QSAFV
Sbjct: 423 PRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFV 482
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
GR I DN+++ E H L G MA+K DMSKAYDR++W F++ L+ GFH
Sbjct: 483 PGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDK 542
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
WI V+ V +Y +NG S++P RGLRQGDPLSPYLF+L T+VLS + +AQ++
Sbjct: 543 WIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEK 602
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
G G+R SP + HL FADD++ F + + ++ +L Y ASGQ IN+AKS +
Sbjct: 603 GVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAI 662
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
F P KR + L + G YLGLP +GR K I ++++++ W
Sbjct: 663 TFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSI 722
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
L+ AGK++L+KA++ ++PSYAM P + C + +++ FWW S+ R + W SW
Sbjct: 723 RFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSW 782
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALG 782
DK+TL +GG+GFR++ A+ +WR+L P +L RV+ Y +SFM +
Sbjct: 783 DKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSAS 835
Query: 783 RN-PSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWL--SSGEALVKPINAA--DLK 837
+ S WR +LAGRD + + W +G G S+ VW + WL SS + + P DL
Sbjct: 836 PSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLS 895
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
V DLI + + WN I+ P+ +I + ++ D + W G+YT +G+
Sbjct: 896 VHDLICHDVKSWNVEAIR-KHLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYA 954
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+A+ N S + + + IW H KVK FLWKA +L V L R+ I
Sbjct: 955 LAKLN-------SFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIE 1007
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
C C E+ HL L+CP+ + VW + + + + E + LL + L
Sbjct: 1008 AEVTCK-RCGQTESSLHLMLLCPYAKKVWELAPVLFNPS-EATHSSVALLLVDAKRMVAL 1065
Query: 1018 SQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRII 1077
L LLW +W+ RN +F D ++ L + +D ++ +I
Sbjct: 1066 PPTGLGSAPLYPWLLWHLWKARNRLIF-----DNHSCSEEGLVLKAILDARAWMEAQLLI 1120
Query: 1078 ESIQSQRTRASDWIPPEGNSLKIN---VDASWVENLPQAALGVLIRDKYST-LLSGTHAK 1133
+ SD+ P N LK+ VDA+W + +G ++D Y + +
Sbjct: 1121 H----HPSPISDYPSPTPN-LKVTSCFVDAAWTTS-GYCGMGWFLQDPYKVKIKENQSSS 1174
Query: 1134 IYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFC 1193
+ S L AE A+ L A + G ++ + SD K L+ + I E +L DI
Sbjct: 1175 SFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRE 1234
Query: 1194 LKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLS 1227
L F F + R N A +AK+ + +LS
Sbjct: 1235 LSVSFTHLCFFFIPRLSNVVADSLAKSALSVILS 1268
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 606 bits (1562), Expect = e-171
Identities = 359/1055 (34%), Positives = 570/1055 (54%), Gaps = 56/1055 (5%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC+ GDFNDIL+ EK G ++ + F E + L+++ GN FTW D ++
Sbjct: 94 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI 153
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDEH 126
+ +LDR N W FP ++ SDH P+L+ +S S + F+++ +
Sbjct: 154 -QCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFK 212
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
E K + + W+R + I++++R+++ +++L S +K+ + +I +L+ +
Sbjct: 213 EDVKEAIIRTWSRGKHGTN--ISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL--- 267
Query: 187 EERPNHLVDWA---GVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQR 243
E+ LV W V V+K + +R+EE YW Q+SR KW + G++NSK+FHA+ Q
Sbjct: 268 -EKEQSLV-WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQN 325
Query: 244 RNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNN 303
R R RI++++D G + ++ +++ ++F + S + +V++ +N
Sbjct: 326 RQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNE 385
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L+ VS EI EAV + APGPDG++ LFF+++W + + V +K+FF + +
Sbjct: 386 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 445
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
E N T + LIPK P +V RPIS C+ + K+IS+IM RL+ L ++S QSAFV
Sbjct: 446 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 505
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
RLI DNI+VA E H L + S +MA+K DMSKAYDR+EW+++ LL+ GFH W
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
++ ++ V TY + +N +I RGLRQGDPLSP+LFVL T+ L+ +L++AQ EG
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEG 625
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G++F+ P + HL FADDSL +AS ++ + ++L +Y A+GQ IN+ KS +
Sbjct: 626 ALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSIT 685
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG+ + K I L + G YLGLP + +K L ++++++KEKL+ W
Sbjct: 686 FGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTR 745
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+Q GKEVL+K++ A+P +AM+ P T C +L + +A+FWW S R IHW+SW+
Sbjct: 746 CLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWE 805
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ L K+ GG+GFRD+++ N A LA+QAWR+L P+ L R++KS YF T F+ AAL +
Sbjct: 806 RLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQ 865
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALV----KPINAADLKVS 839
PS+ WRS+L GR+ +S+ + VGDG S+ VW D W+ I LKV
Sbjct: 866 RPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVK 925
Query: 840 DLISPNGEGWNDNLIKGLFQPE--LAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
L++P W++ ++ LF PE L IK ++ +S QAD W GD++V S +
Sbjct: 926 ALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVIS---QADFFVWKLNKSGDFSVKSAYW 982
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+A S + L +W+ K+K+FLWK
Sbjct: 983 LAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWK------------------ 1024
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
VC + E+ H +CP +R +W S + G S I L
Sbjct: 1025 ------VCGELGESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIYS------NINHLL 1072
Query: 1018 SQDFDREF-----SLLASLLWSIWRGRNNSVFKAI 1047
++E+ + +LW IW+ RN+ +F+ I
Sbjct: 1073 ENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGI 1107
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 602 bits (1553), Expect = e-170
Identities = 375/1218 (30%), Positives = 601/1218 (48%), Gaps = 102/1218 (8%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW LIGDFN+IL +EK G + + FR V L D+ G+RF+W R
Sbjct: 511 PWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RHSH 569
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLN-PLSPSRSKTPFKYEVFWDE 125
+ LDR N LFP A SDH P+ L+ + +R PF+++ E
Sbjct: 570 TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLE 629
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K V GWN+ + +L +++++ +Q + + ++ + I +L+ + +
Sbjct: 630 VPHFKTYVKAGWNKAI--NGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDK 687
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
N + + I+ ++ +R EE YW Q+SR +W K GD+N++FFHA T R +
Sbjct: 688 AMSSVNR-TERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFS 746
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEG--VSQIEECLHNFPKKVTQQLNN 303
NR+ ++D G+ G ++ + ++ + G VS I+ F VT+Q+N+
Sbjct: 747 VNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIID--FAGFKPIVTEQIND 804
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L +SDLEI A+ +G KAPGPDGL F+K+ W + V +K FF + +
Sbjct: 805 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 864
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
IN T + +IPK+ +PE++ +RPI+ CN + K+IS+ +V RLK LD+++S +Q+AF+
Sbjct: 865 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 924
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
GRL+ DN+++A E H L + S++YMA+K D+SKAYDR+EW F+E T+ +GF TW
Sbjct: 925 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 984
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
I ++ V+ Y + VNG ++ P RG+RQGDPLSPYLF+L D+L+ ++ EG
Sbjct: 985 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1044
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G+R P +THL FADDSL F +++VR ++ V ++Y SGQKIN++KS +
Sbjct: 1045 DIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMIT 1104
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG + + N+L + G YLGLP +GR K +I E+VK++ W
Sbjct: 1105 FGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1164
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+ AGKE+++K++ ++P YAM+ P + + AL+ NFWW+ K R I W +W
Sbjct: 1165 YLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWK 1224
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ SK++GG+GFRDL N A LA+Q WR++ NP +L+ R+MK+ YF S + A R
Sbjct: 1225 RLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQR 1284
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAADLKVSDLIS 843
S+ W S+LAG D I + SR++VGDGK +
Sbjct: 1285 YQSYGWTSMLAGLDVIKKGSRFIVGDGK-------------------------------T 1313
Query: 844 PNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNT 903
+ WN +LI L P+ ++ +S+ D + W ++ GDY
Sbjct: 1314 GSYRYWNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDY------------- 1360
Query: 904 IITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCP 963
T+W + K+K LW+ +L + L + + CP
Sbjct: 1361 -------------------TLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCP 1401
Query: 964 VCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRIT-ILKRLSQDFD 1022
C ET+ H+ CP+ ++W S+ W+ F + I+ ++ S +
Sbjct: 1402 RCPTEEETINHVLFTCPYAASIWGLSNFPWLPG----HTFSQDTEENISFLINSFSNNTL 1457
Query: 1023 REFSLLAS--LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIESI 1080
LA L+W +W+ RNN VF + Q ++ + +ED + +
Sbjct: 1458 NTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRREDASVLTR 1517
Query: 1081 QSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTHAKIYCSSPL 1140
S R W P +K N DA + N Q+ G +I + + L++
Sbjct: 1518 SSHRANVR-WKKPVFPLVKCNFDAGFTGNNTQSTGGWIIPETKALLIA------------ 1564
Query: 1141 TAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLKRLFHG 1200
+ A+ G V E D + L++A E +++L+D+ F
Sbjct: 1565 ----------MQQAWVRGYKCVQFEGDCEILIKAINGAISRCEITSLLRDVDFWASRFST 1614
Query: 1201 CNFVWTNRERNKSAHLVA 1218
F +TNR N +AHL+A
Sbjct: 1615 VVFTFTNRLCNNTAHLLA 1632
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 602 bits (1552), Expect = e-170
Identities = 337/995 (33%), Positives = 530/995 (52%), Gaps = 18/995 (1%)
Query: 1 RHSEATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQS 60
R S A PW +IGDFN+ L+ E P+ + +Q FR+ ++ L D+ KG T+
Sbjct: 761 RQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVPHTYD- 819
Query: 61 NPRDGFVT-REKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKTPFK- 118
N RDG+ + +LDR +A+ WRDLFP A SDHSPILL + ++ K
Sbjct: 820 NRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKC 879
Query: 119 --YEVFWDEHEQCKGIVTQGWNRPTLHDDCW-INLS-NRIQSSKQNLWS*QKRTFRAADK 174
YE+ W+ + ++ + W + D IN++ R+ S+ ++ WS K + K
Sbjct: 880 LHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRS-WS--KTKVKNVGK 936
Query: 175 EIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSK 234
E+ + ++ ++E+ + +R ++ + +EE+ W QRSRV W K GD+N++
Sbjct: 937 ELEKARK---KLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTR 993
Query: 235 FFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFP 294
FFH+ + R +N+I ++RD G S + +++ ++ + E F
Sbjct: 994 FFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQ 1053
Query: 295 KKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKE 354
+KVT +N KL + EI +A+ ++G LK+P PDG F++ +WG +K + A++
Sbjct: 1054 EKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAVRN 1113
Query: 355 FFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLI 414
FF S + +N+T + LIPK D P + +RPIS CN + KV+S+ +V RL+ LD L+
Sbjct: 1114 FFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLV 1173
Query: 415 SPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTL 474
S QSAF+ GR+I DN ++A E FH + K +++ A K+D+SKAYDR++W F+E L
Sbjct: 1174 SKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELAL 1233
Query: 475 LAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSF 534
GF W+ ++ V Y +K NG L S P RGLRQG+PLSP+LF+ D LS
Sbjct: 1234 NKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSL 1293
Query: 535 MLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQK 594
+L + + L+ ++P +++L FADD+LLF +A +EA + +VL Y + +GQ
Sbjct: 1294 LLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQL 1353
Query: 595 INVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVK 654
IN AK ++FG+ +P DI N L + + YLG P GR ++ K+
Sbjct: 1354 INPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIA 1413
Query: 655 EKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKD 714
+++ W E L+ GKE+LIKA+IQAIP Y M + FP + + L + NFWW +
Sbjct: 1414 KRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGR 1473
Query: 715 RGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNT 774
R HWR+WD +T +K GG+GFRD + N A L RQAWR++ P +L +V+K+ YFP+
Sbjct: 1474 RRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFPHG 1533
Query: 775 SFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLS---SGEALVKPI 831
S N S W + G D + + W +G+G SV++W D W+ S +
Sbjct: 1534 SLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRPVSSKA 1593
Query: 832 NAADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYT 891
N VSDLI+ +G W+ I F A I + +S + D I W G ++
Sbjct: 1594 NCRLKWVSDLIAEDGT-WDSAKINQYFLKIDADIIQKICISARLEEDFIAWHPDKTGRFS 1652
Query: 892 VNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNL 951
V S +++A + SSSS +++ W IW +VPQKV++F W+ + NSLA N
Sbjct: 1653 VRSAYKLALQLADMNNCSSSSSSRLNKS-WELIWKCNVPQKVRIFAWRVASNSLATMENK 1711
Query: 952 WRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVW 986
++ + C +C E H C ++W
Sbjct: 1712 KKRNLERFDVCGICDREKEDAGHALCRCVHANSLW 1746
Score = 46.2 bits (108), Expect = 0.007
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 1090 WIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLL-SGTHAKIYCSSPLTAEACAIR 1148
W P +K+NVD S+ N + +G+++R+ ++ S + CS PL AE A
Sbjct: 1777 WERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACV 1836
Query: 1149 EGLNLAYNLGCTEVVLESDNKSLVEAC----KANALIGEASTILQDIFCLKRLFHGCNFV 1204
EGL+LA + + +E+D S+++ K +++ + I Q+ L
Sbjct: 1837 EGLHLALHWTLLPIQVETDCSSVIQLLNHPDKDRSVL---ANIAQEAKSLMAGDRQIAIS 1893
Query: 1205 WTNRERNKSAHLVAKACMQSLLSWNWL 1231
R +N +H +A LS WL
Sbjct: 1894 KVQRSQNVISHFLANKARAESLSSFWL 1920
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 601 bits (1549), Expect = e-170
Identities = 388/1227 (31%), Positives = 608/1227 (48%), Gaps = 75/1227 (6%)
Query: 15 NDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFVTREKLDR 74
N+IL EK G P+ FR F+ +GL D+ GN F+W+ D FV R++LDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 75 VLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKT--PFKYEVFWDEHEQCKGI 132
++N +W + FP+ + SDH P+++ + +R K F+++ +++ +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVF-VDEARVKRRGQFRFDNRLRDNDVVNAL 153
Query: 133 VTQGWNRP------TLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
+ + W T + C + N + N ++T +A ++ +
Sbjct: 154 IQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTA-------- 205
Query: 187 EERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNR 246
+ PN + + ++ ++ EE +W QRSRV W GD+N+ +FHA T RR +
Sbjct: 206 -DPPNPTT----IGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQ 260
Query: 247 NRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLI 306
NR+ + D G+ + + + +++ IF +E V+Q N+ L
Sbjct: 261 NRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLT 320
Query: 307 LAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN 366
+D E+ +AV + KAPGPDG F+ ++W I V I+ FF S+N +N
Sbjct: 321 RIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMN 380
Query: 367 ETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRL 426
ET + LIPK P V +RPI+ CN K++++IM R++ L LIS NQSAFV GR+
Sbjct: 381 ETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRV 440
Query: 427 IQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDR 486
I DN+++ E H L MA+K DMSKAYDR+EW F+++ L +GFH WID
Sbjct: 441 ISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDW 500
Query: 487 VLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFF 546
VL V +Y +NG ++P RGLRQGDPLSP LF+L T+VLS + ++AQ+ +
Sbjct: 501 VLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLP 560
Query: 547 GLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGK 606
G+R + P + HL FADD++ F+++ + ++L+ Y +ASGQ IN KS + F
Sbjct: 561 GVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSS 620
Query: 607 LAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLN 666
P K + +L + G YLGLP +GR K I +K+++K W L+
Sbjct: 621 KTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLS 680
Query: 667 QAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMT 726
QAGK+V++KA++ ++P Y+M+ P C + +L+ FWW ++ R W +W K+T
Sbjct: 681 QAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLT 740
Query: 727 LSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPS 786
K GG+GFRD+ N + LA+ WR+L +PE+L R++ Y ++SFM L PS
Sbjct: 741 NPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPS 800
Query: 787 WMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAA-----DLKVSDL 841
WRS++AGR+ + W++ +G+ V +W D WLS + LV PI A DL+VS L
Sbjct: 801 HGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLV-PIGPALREHQDLRVSAL 859
Query: 842 ISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARN 901
I+ N W+ N I + P I Q P D + W G YT SG+ +A
Sbjct: 860 INQNTLQWDWNKI-AVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASV 918
Query: 902 NTI-ITQTHSSSSHVISEDLWNT-IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPS 959
+I I QT + W + +W K+K +WKA+ +L V L R+ ISPS
Sbjct: 919 ASIPIPQTQFN---------WQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPS 969
Query: 960 GQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSW-LLQRITILKRLS 1018
C C + E+ HLF C + VW + LQ G D+ LL++ IL
Sbjct: 970 AACHRC-GAPESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTG 1028
Query: 1019 QDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLL-STMDLAKPVKEDRII 1077
F + + G+ ++ +AI Q A R L T ++ P+ +
Sbjct: 1029 VTSAALFPWICGIY-----GKLGTMTRAIL--DALAWQSAQRCLPKTRNVVHPISQ---- 1077
Query: 1078 ESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIR-----DKYSTLLSGTHA 1132
+P + VDA+W+ A G + + +K + S
Sbjct: 1078 -------------LPVLRSGYFCFVDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCR 1124
Query: 1133 KIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIF 1192
++ S L+AEA AI+ L A LG T++++ SD+KS+V+A +N I E +L +I
Sbjct: 1125 RL--PSALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIR 1182
Query: 1193 CLKRLFHGCNFVWTNRERNKSAHLVAK 1219
L+ FH F + +R N A AK
Sbjct: 1183 ALRVSFHSLCFNFISRSANAIADATAK 1209
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 596 bits (1536), Expect = e-168
Identities = 368/1134 (32%), Positives = 569/1134 (49%), Gaps = 49/1134 (4%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC+IGDFNDIL K G + S Q F+ + + + GN FTW D ++
Sbjct: 94 WCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTWGGTRNDQWI 153
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDEH 126
+ KLDR N W +F N+ ++ S H P+L+N ++ + F Y+ + E
Sbjct: 154 -QCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQFCYDKRFAED 212
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
QC W + D L R+ ++ + +K + A I+RL+ E+
Sbjct: 213 PQCAASTLSSWIGNGISDVSSSML--RMVKCRKAISGWKKNSDFNAQNRILRLRSELD-- 268
Query: 187 EERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNR 246
EE+ W+ + VI+ ++ +R+EE +W +S+ KW GD+NSKFF A R +
Sbjct: 269 EEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAMVKANRTK 328
Query: 247 NRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLI 306
N + + D G + ++E++F + + + L F +V++++N +L
Sbjct: 329 NSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSEEMNQELT 388
Query: 307 LAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN 366
AV++LEI AV + AP + + I FF + L E N
Sbjct: 389 QAVTELEIHSAVFSINVESAP-----------EKLECCQGSDYIEILGFFETGVLPQEWN 437
Query: 367 ETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRL 426
T + LIPK +P+ + RPIS C+ + K+IS+I+ +LK+ L S++SP+QSAF RL
Sbjct: 438 HTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAERL 497
Query: 427 IQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDR 486
I DNI++A E H L + SK +M K DMSKAYDR+EW+F++ L+A GF+ WI
Sbjct: 498 ISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISW 557
Query: 487 VLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFF 546
++ V TY + +NG + P RG+RQGDP+SP+LFVL T+ L +L QA+ K
Sbjct: 558 IMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVS 617
Query: 547 GLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGK 606
G++F P++ HL F DD+ L A+ + ++ L+ Y SGQ INV KS + FG
Sbjct: 618 GIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGV 677
Query: 607 LAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLN 666
KR I N + + G YLGLP +K +I+EK++ L GW + L+
Sbjct: 678 KVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLS 737
Query: 667 QAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMT 726
Q GKE+L+K+I A+P Y MT PK C L +++ +FWW S IHW K+T
Sbjct: 738 QGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLT 797
Query: 727 LSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPS 786
L K GG GF+DL+ N A LA+QAWR+ ++ +++ ++ KS YF NT F+ A G PS
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 787 WMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAADL-----KVSDL 841
+ WRS+L GR+ ++ + ++G+G+ VW D WL G + +P+N L KVS L
Sbjct: 858 YTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSR-RPMNLHSLMNIHMKVSHL 916
Query: 842 ISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARN 901
I P WN + LF E ++++ + D W T G YTV SG+ +
Sbjct: 917 IDPLTRNWNLKKLTELFH-EKDVQLIMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSR 975
Query: 902 NTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQ 961
T + + L++ +WS K+KVF+WKA +LAV+ L + I +
Sbjct: 976 ETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADG 1035
Query: 962 CPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDF 1021
C C + +ET+ HL CP+ R VW S +Q T F + + I + + SQ+F
Sbjct: 1036 CLFCKEEIETINHLLFQCPFARQVWALSLIQAPAT-----GFGTSIFSNINHVIQNSQNF 1090
Query: 1022 --DREFSLLAS-LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIE 1078
R ++ LLW IW+ RN ++F Q T L S+ +AK +E +
Sbjct: 1091 GIPRHMRTVSPWLLWEIWKNRNKTLF------------QGTGLTSSEIVAKAYEECNLWI 1138
Query: 1079 SIQSQRT-----RASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLL 1127
+ Q + + W PP LK N+ +W A + ++RD +L
Sbjct: 1139 NAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 596 bits (1536), Expect = e-168
Identities = 341/954 (35%), Positives = 537/954 (55%), Gaps = 21/954 (2%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC+ GDFNDIL+ EK G ++ + F E + L+++ GN FTW D ++
Sbjct: 97 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI 156
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDEH 126
+ +LDR N W FP ++ SDH P+L+ +S S + F+++ +
Sbjct: 157 -QCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFK 215
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
E K + + W+R + I++++R+++ +++L S +K+ + +I +L+ +
Sbjct: 216 EDVKEAIIRTWSRGKHGTN--ISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL--- 270
Query: 187 EERPNHLVDWA---GVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQR 243
E+ LV W V V+K + +R+EE YW Q+SR KW + G++NSK+FHA+ Q
Sbjct: 271 -EKEQSLV-WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQN 328
Query: 244 RNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNN 303
R R RI++++D G + ++ +++ ++F + S + +V++ +N
Sbjct: 329 RQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNE 388
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L+ VS EI EAV + APGPDG++ LFF+++W + + V +K+FF + +
Sbjct: 389 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 448
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
E N T + LIPK P +V RPIS C+ + K+IS+IM RL+ L ++S QSAFV
Sbjct: 449 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 508
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
RLI DNI+VA E H L + S +MA+K DMSKAYDR+EW+++ LL+ GFH W
Sbjct: 509 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 568
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
++ ++ V TY + +N +I RGLRQGDPLSP+LFVL T+ L+ +L++AQ EG
Sbjct: 569 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEG 628
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G++F+ P + HL FADDSL +AS ++ + ++L +Y A+GQ IN+ KS +
Sbjct: 629 ALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSIT 688
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG+ + K I L + G YLGLP + +K L ++++++KEKL+ W
Sbjct: 689 FGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTR 748
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+Q GKEVL+K++ A+P +AM+ P T C +L + +A+FWW S R IHW+SW+
Sbjct: 749 CLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWE 808
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ L K+ GG+GFRD+++ N A LA+QAWR+L P+ L R++KS YF T F+ AAL +
Sbjct: 809 RLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQ 868
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALV----KPINAADLKVS 839
PS+ WRS+L GR+ +S+ + VGDG S+ VW D W+ I LKV
Sbjct: 869 RPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVK 928
Query: 840 DLISPNGEGWNDNLIKGLFQPE--LAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
L++P W++ ++ LF PE L IK ++ +S QAD W GD++V S +
Sbjct: 929 ALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVIS---QADFFVWKLNKSGDFSVKSAYW 985
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNL 951
+A S + L +W+ K+K+FLWK L V NL
Sbjct: 986 LAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKVLSGILPVAENL 1039
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 595 bits (1534), Expect = e-168
Identities = 337/973 (34%), Positives = 503/973 (51%), Gaps = 41/973 (4%)
Query: 96 VTSDHSPILLNPLSP-SRSKTPFKYEVFWDEHEQCKGIVTQGWN-----RPTLHDDCWIN 149
+ SDHSP++ R K F+++ W + ++QGWN R + N
Sbjct: 2 LASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTN 61
Query: 150 LSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTL 209
I +++L ++T E+ +++ R E L L++
Sbjct: 62 CRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELT---------LRLKEA 112
Query: 210 WRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGA 269
+R EE YW Q+SR W K GD NSKFFHA T QRR RNRI + D GIW D+
Sbjct: 113 YRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNI 172
Query: 270 FISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGP 329
+S+++++F T +E L +T ++N+ L ++ E+ A+ + KAPGP
Sbjct: 173 AVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGP 232
Query: 330 DGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPIS 389
DG+ LFF+ W IK + + F +N T + LIPK + P + + RPIS
Sbjct: 233 DGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPIS 292
Query: 390 CCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSK 449
CN KVIS+I+ RLK L +LIS QSAFV GRLI DNI++AQE FH L
Sbjct: 293 LCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKD 352
Query: 450 NYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLI 509
+MA+K DMSKAYD++EW FIE L GF WI ++ + Y++ +NG +I
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412
Query: 510 PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLF 569
P RGLRQGDPLSPYLF+L T+VL + +A+++ G++ SPA++HL FADDSL F
Sbjct: 413 PERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFF 472
Query: 570 AEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPG 629
+A+ + I+++L Y SGQ+IN +KS + FG K DI +L + G
Sbjct: 473 CKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMG 532
Query: 630 HYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIV 689
YLGLP G +K+ ++ ++++ ++ GW L++ GKEV+IK++ +P Y M+
Sbjct: 533 SYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCF 592
Query: 690 HFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLAR 749
PK + L + VA FWW S G RG+HW +WDK+ SK GG+GFR++ N A LA+
Sbjct: 593 RLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 750 QAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGD 809
Q WR++T P++L+ +V K YF ++ + + +PS+ WRS+++ R + + VG
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGS 712
Query: 810 GKSVQVWGDNWLSS--------GEALVKPINAADLKVSDLISPNGEGWNDNLIKGLFQPE 861
G S+ VW D W+ + G ++V P LKV LI WN +L+K LF PE
Sbjct: 713 GASISVWNDPWIPAQFPRPAKYGGSIVDP----SLKVKSLIDSRSNFWNIDLLKELFDPE 768
Query: 862 LAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLW 921
I P+ N D + W T G+YTV SG+ AR + + + +I DL
Sbjct: 769 DVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDL------NEGTTLIGPDLT 822
Query: 922 NT---IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLV 978
IW P K++ FLW+ + V NL ++ I C C S E++ H
Sbjct: 823 TLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQ 882
Query: 979 CPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRG 1038
C R +W +L I T G+ P +S + R+ D + ++W IW+
Sbjct: 883 CHPARQIW---ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDS--APYPWIIWYIWKA 937
Query: 1039 RNNSVFKAICPDP 1051
RN VF+ + DP
Sbjct: 938 RNEKVFENVDKDP 950
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 589 bits (1518), Expect = e-166
Identities = 372/1220 (30%), Positives = 598/1220 (48%), Gaps = 74/1220 (6%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PWC++GDFN IL+ EK G + S F + + ++++ GN FTW + +
Sbjct: 132 PWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGGKTNEMW 191
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDE 125
+ + +LDR N W FP ++ + SDH P+L+ + F+++
Sbjct: 192 I-QSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFN 250
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K + Q WN +++ + + S + W + + R E+ +
Sbjct: 251 QPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARAALELEQ 310
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLW--RQEELYWGQRSRVKWAKYGDKNSKFFHASTIQR 243
P + V LK D EE++W Q+SR KW GDKN+ FFHAS
Sbjct: 311 SSGFPRADL------VFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDN 364
Query: 244 RNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNN 303
R + ID++ D G++ + + + +++ D+F + S + ++ +VT+ +NN
Sbjct: 365 RGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNN 424
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
LI AVS EI EAV + APG DG G FF+ +W I V I+ FFL
Sbjct: 425 TLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVTKEIQNFFLLGYFPK 484
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
N T + L+PK P+ + RPIS C+ + K+IS+IMV RL+ L L+SPNQSAFV
Sbjct: 485 SWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVA 544
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
RLI DNI++A E H L SK ++A+K +MSKA+DR+EW ++ L A GFH W
Sbjct: 545 ERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFHQKW 604
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
+ ++ ++ +Y + +N +++P RGLRQGDPLSP+LFVL ++ L+ ++++A+++G
Sbjct: 605 VGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSEGLTHLMNRAERQG 664
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G+RF+ PA+ HL FADDSL +A E T I + +Y +GQ+IN KS +
Sbjct: 665 LLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDKSSIT 724
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
G L K I L + YLGLP + +K L +I++++K +L GW
Sbjct: 725 LGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYIKDRLKTRLSGWFAR 784
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+ GKE L+KA A+ YAM+ KT C ++ + +++FWW + R HW S +
Sbjct: 785 TLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCE 844
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
KM LSKE GG+GFRD+ + N A LA+QAWR+L P +L+ R KS Y+ F+ A L
Sbjct: 845 KMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKA 904
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGE---ALVKPINA-ADLKVS 839
PS+ WRS+L GRD + + R VG+G S VW D W+ + L K + DL+V
Sbjct: 905 TPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLDLRVH 964
Query: 840 DLISPNGEGWNDNLIKGLFQP-ELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRV 898
DLI+ + ++ LF P ++ I + + PV + D W H+ G+Y+V SG+ +
Sbjct: 965 DLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSMD--DFWVWLHSKSGEYSVKSGYWL 1022
Query: 899 ARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISP 958
A + + L IWS+ K+K+FLW+ ++L V Y + R+ +
Sbjct: 1023 AFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPI 1082
Query: 959 SGQCPVCCDSLETVEHLFLVCPWTRAVW---------FG-------SSLQWIVTLEGMGP 1002
+C VC + E++ H+ C R VW FG +++Q+++ L+G G
Sbjct: 1083 DPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKG- 1141
Query: 1003 FDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLL 1062
I +++ + + +LW +W+ R+ F+ P +I++ +
Sbjct: 1142 ---------LIPEQIKKSW-------PWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDV 1185
Query: 1063 STMDLAKPVKEDRIIESIQSQRTRA-----SDWIPPEGNSLKINVDASWVENLPQAALGV 1117
LA+ ++ S+ + T S W PP +K N+ W
Sbjct: 1186 QEWFLAQ-----ALVASVDAGETVCSAPCPSSWEPPPLGWVKCNISGVWSGKKRVCGGAW 1240
Query: 1118 LIRDKYSTL----------LSGTHAKIYCSSPLTAEACAIREGLN--LAYNLGCTEVVLE 1165
++RD + + LS ++C C + L L +LG T +
Sbjct: 1241 VLRDDHGKVLLHSRRAFSNLSVKKDALFCCVKWALRVCLATDSLRFCLLLSLGLTVRFCQ 1300
Query: 1166 SDNKSL--VEACKANALIGE 1183
+++ +L + N+ GE
Sbjct: 1301 AESLALFCFSCFRTNSFFGE 1320
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 577 bits (1488), Expect = e-163
Identities = 342/1059 (32%), Positives = 535/1059 (50%), Gaps = 87/1059 (8%)
Query: 1 RHSEATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQS 60
+ S W +IGDFN+ L+ E +P++ + +Q FR+ + L D+ + G T+ +
Sbjct: 559 KQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTYDN 618
Query: 61 NPRDGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKTPFKYE 120
+ +LDR LA+ WRDLF S+H PI+L
Sbjct: 619 RRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLK-------------- 664
Query: 121 VFWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLK 180
LH S WS K+ ++ +E+ + +
Sbjct: 665 ---------------------LHG-----------SVPDQSWS--KKKYKNIGRELEKTR 690
Query: 181 QEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHAST 240
+++ + E D A +R ++ L +EE+ W QRSRV W K GD+N+KFFH
Sbjct: 691 KKLSNLLEAGT---DKAAIRQTSDYMNELLYREEMLWLQRSRVNWLKEGDRNTKFFHNRV 747
Query: 241 IQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQ 300
R +N+I ++RD+ G + + + +++D+F + KVT++
Sbjct: 748 AWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTADPNLDHSPVTRLIQPKVTEE 807
Query: 301 LNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSEN 360
+NN+L S+ EI A+ ++G LKAPG DG F++ +WG IK+ + A+KEFF S
Sbjct: 808 MNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGI 867
Query: 361 LSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSA 420
+ +N+T + LIPK++ P + FRPIS CN I KV+S+ +V RL+ LD LIS NQSA
Sbjct: 868 MLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSA 927
Query: 421 FVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFH 480
FV R+I DN ++A E FH + + A K+D+SKAYDR++W F+E+++ +GF
Sbjct: 928 FVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFS 987
Query: 481 PTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQ 540
W+ V+T + S + +G R P+LF+ D LS +L +
Sbjct: 988 HCWVSWVMTCI---------------STVCDKGTR----CDPFLFLFVADGLSLLLEEKV 1028
Query: 541 QEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKS 600
++G +R ++P ++HL FADD+LLF +A + ++ +I +V Y ++GQ IN K
Sbjct: 1029 EQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKC 1088
Query: 601 GLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGW 660
++FG P ++ I N L + + YLGLP GR + E++ +K+ W
Sbjct: 1089 SILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQW 1148
Query: 661 KETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWR 720
E L+ GKEVLIKA+IQAIP Y M I P++ C L +L NFWW ++ R HW+
Sbjct: 1149 GENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWK 1208
Query: 721 SWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAA 780
+W +T SK GG+GF+D+R N A LARQAWR++ NP++L RV+K+ Y+PN S + +
Sbjct: 1209 AWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTS 1268
Query: 781 LGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWL--SSGEALVKPINAADLK- 837
G N S W+++ G + + + W +G+G+SV+VW D WL + P N +K
Sbjct: 1269 FGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCRIKW 1328
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
V+DL+ NG W+ N I +F P IL+ S ++ D I W G+++V + +R
Sbjct: 1329 VADLMLDNGM-WDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYR 1387
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+A N + SSSS V W +W +VP KVK+F W+A+ N L N ++ +
Sbjct: 1388 LA-ENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLE 1446
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWF----GSSLQWIVTLEGMGPFDSWLLQRITI 1013
S C +C E H CP + +W + L + +GP SWL R+ +
Sbjct: 1447 ISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGP--SWLFNRLAL 1504
Query: 1014 LKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPE 1052
L D E + +LW IW N + P E
Sbjct: 1505 LP------DHEQPMFLMVLWRIWFVHNEIIHGKPSPSIE 1537
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 558 bits (1439), Expect = e-157
Identities = 326/958 (34%), Positives = 510/958 (53%), Gaps = 24/958 (2%)
Query: 172 ADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDK 231
A I +L++E+ + E+ W + +++ + +R+EE +W +SR KW GDK
Sbjct: 22 AKSRITKLRRELDK--EKSATFPSWTQISLLQDVLGDAYREEEDFWRLKSRDKWMVGGDK 79
Query: 232 NSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLH 291
NSKFF A+ R N + + D G + + ++ +ED+F + S ++ L
Sbjct: 80 NSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFSSSYPSSMDSVLE 139
Query: 292 NFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPA 351
F K+VT+ +N L V++ EI +AV + APGPDG LFF+ W +K+ +
Sbjct: 140 GFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISD 199
Query: 352 IKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLD 411
I+ FF + L + N T + LIPK+ P + RPIS C+ + K+IS+I+ RLK+ L
Sbjct: 200 IELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLP 259
Query: 412 SLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIE 471
++SP QSAFV RL+ DNI++A E H L + SK++M K DMSKAYDR+EW F++
Sbjct: 260 VIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLK 319
Query: 472 RTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDV 531
LLA GF+ TWI+ ++ V +Y + +NG + P RGLRQGDPLSP+LFVL T+
Sbjct: 320 GILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEA 379
Query: 532 LSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRAS 591
L +L+QA++ GK G++F P++ HL FADD+LL +AS E I+ L+ Y S
Sbjct: 380 LIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHIS 439
Query: 592 GQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEE 651
GQ IN KS + FG K+ I N + G YLGLP + +K +I+E
Sbjct: 440 GQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKE 499
Query: 652 KVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQ 711
K++ +L GW L+Q GK++L+K+I A P YAMT KT C L +++ +FWW S
Sbjct: 500 KLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSV 559
Query: 712 GKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYF 771
+ IHW K+ L K GG GF+DL+ N A LA+QA R+ T+ ++L +++KS Y+
Sbjct: 560 QDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYY 619
Query: 772 PNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSG-----EA 826
N+ F+ A G PS+ W+S+L GR+ + + ++G+G++ VW DNW+ E+
Sbjct: 620 MNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPES 679
Query: 827 LVKPINAADLKVSDLISPNGEGWNDNLIKGLFQ-PELAIKILQTPVSKFNQADVIFWPHT 885
L ++ LKVS LI P WN N+++ LF E+ I Q P++ ++ D W T
Sbjct: 680 LQIMVD-IQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMA--SRQDSFCWFGT 736
Query: 886 PRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSL 945
G YTV S + + + L+ IW+ + K+KVFLWK ++
Sbjct: 737 NHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAV 796
Query: 946 AVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDS 1005
AV+ L + + C +C + ET+ H+ CP R VW + +Q G G DS
Sbjct: 797 AVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQ--SPNHGFG--DS 852
Query: 1006 WLLQRITILKRL-SQDFDREFSLLAS-LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLS 1063
++ + + ++ ++W +W+ RN +F+ I + +A
Sbjct: 853 IFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALE--- 909
Query: 1064 TMDLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRD 1121
D + +K +I S + T+ WIPP N LK N+ +W + A + ++R+
Sbjct: 910 --DCKEWLKAHELICS--KEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRN 963
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 542 bits (1396), Expect = e-152
Identities = 296/810 (36%), Positives = 461/810 (56%), Gaps = 9/810 (1%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW LIGDFN+IL +EK G + + FR V L D+ G+RF+W R
Sbjct: 491 PWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RHSH 549
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLN-PLSPSRSKTPFKYEVFWDE 125
+ LDR N LFP A SDH P+ L+ + +R PF+++ E
Sbjct: 550 TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLE 609
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K V GWN+ + +L +++++ +Q + + ++ + I +L+ + +
Sbjct: 610 VPHFKTYVKAGWNKAI--NGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDK 667
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
N + + I+ ++ +R EE YW Q+SR +W K GD+N++FFHA T R +
Sbjct: 668 AMSSVNR-TERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFS 726
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEG--VSQIEECLHNFPKKVTQQLNN 303
NR+ ++D G+ G ++ + ++ + G VS I+ F VT+Q+N+
Sbjct: 727 VNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIID--FAGFKPIVTEQIND 784
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L +SDLEI A+ +G KAPGPDGL F+K+ W + V +K FF + +
Sbjct: 785 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 844
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
IN T + +IPK+ +PE++ +RPI+ CN + K+IS+ +V RLK LD+++S +Q+AF+
Sbjct: 845 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 904
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
GRL+ DN+++A E H L + S++YMA+K D+SKAYDR+EW F+E T+ +GF TW
Sbjct: 905 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 964
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
I ++ V+ Y + VNG ++ P RG+RQGDPLSPYLF+L D+L+ ++ EG
Sbjct: 965 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1024
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G+R P +THL FADDSL F +++VR ++ V ++Y SGQKIN++KS +
Sbjct: 1025 DIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMIT 1084
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG + + N+L + G YLGLP +GR K +I E+VK++ W
Sbjct: 1085 FGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1144
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+ AGKE+++K++ ++P YAM+ P + + AL+ NFWW+ K R I W +W
Sbjct: 1145 YLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWK 1204
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ SK++GG+GFRDL N A LA+Q WR++ NP +L+ R+MK+ YF S + A R
Sbjct: 1205 RLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQR 1264
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSV 813
S+ W S+LAG D I + SR++VGDGK+V
Sbjct: 1265 YQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,206,476,237
Number of Sequences: 2540612
Number of extensions: 94439595
Number of successful extensions: 200179
Number of sequences better than 10.0: 1319
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 553
Number of HSP's that attempted gapping in prelim test: 196445
Number of HSP's gapped (non-prelim): 1992
length of query: 1246
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1106
effective length of database: 507,674,714
effective search space: 561488233684
effective search space used: 561488233684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0342b.10