BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.16
(135 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ89625.1| At4g21720 [Arabidopsis thaliana] gi|7268969|emb|C... 191 3e-48
ref|XP_474377.1| OSJNBb0017I01.18 [Oryza sativa (japonica cultiv... 185 2e-46
dbj|BAD44139.1| putative protein [Arabidopsis thaliana] 112 1e-24
gb|AAF56795.3| CG33103-PA, isoform A [Drosophila melanogaster] g... 37 0.080
gb|AAF56794.3| CG33103-PB, isoform B [Drosophila melanogaster] g... 37 0.080
gb|AAO84908.1| extracellular matrix protein papilin 3 [Drosophil... 37 0.080
gb|AAO84907.1| extracellular matrix protein papilin 2 [Drosophil... 37 0.080
sp|P82727|LC12_ARATH Putative low-molecular-weight cysteine-rich... 37 0.14
ref|NP_077876.1| hypothetical protein UU046 [Ureaplasma parvum s... 36 0.23
gb|EAL29612.1| GA12801-PA [Drosophila pseudoobscura] 35 0.30
pir||T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans 35 0.52
gb|AAN10358.4| CG33196-PB [Drosophila melanogaster] gi|56307416|... 34 0.67
ref|ZP_00519548.1| conserved hypothetical protein [Solibacter us... 33 1.1
ref|XP_344590.1| PREDICTED: similar to NF-X1 type zinc finger co... 33 1.1
emb|CAE57700.1| Hypothetical protein CBG00704 [Caenorhabditis br... 33 1.1
ref|XP_498678.1| PREDICTED: hypothetical protein XP_498678 [Homo... 33 1.5
gb|EAA69216.1| hypothetical protein FG01070.1 [Gibberella zeae P... 33 2.0
gb|AAC26793.1| laminin alpha chain [Caenorhabditis elegans] gi|2... 33 2.0
gb|AAA96110.3| Prion-like-(q/n-rich)-domain-bearing protein prot... 33 2.0
ref|ZP_00263656.1| COG0810: Periplasmic protein TonB, links inne... 33 2.0
>gb|AAQ89625.1| At4g21720 [Arabidopsis thaliana] gi|7268969|emb|CAB81279.1|
putative protein [Arabidopsis thaliana]
gi|4455280|emb|CAB36816.1| putative protein [Arabidopsis
thaliana] gi|15234574|ref|NP_193903.1| expressed protein
[Arabidopsis thaliana] gi|51968588|dbj|BAD42986.1|
putative protein [Arabidopsis thaliana]
gi|7485643|pir||T05847 hypothetical protein F17L22.180 -
Arabidopsis thaliana
Length = 139
Score = 191 bits (486), Expect = 3e-48
Identities = 82/139 (58%), Positives = 105/139 (74%), Gaps = 4/139 (2%)
Query: 1 MMPQQWASPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKD 60
M+PQQW PCG++CT+KY+A TQ+PWRVFCKKGC++D ++WE+C+ +C ICYKDPVLKD
Sbjct: 1 MIPQQWTPPCGSKCTNKYSAFTQLPWRVFCKKGCDADSDSWEDCVGDCSEICYKDPVLKD 60
Query: 61 QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKPKPQP 120
+ W+A IDRSPG A YSEECFHACV+GCGYKF+V+ E K+ P RP P P +P P P
Sbjct: 61 RPWTAVIDRSPGDAKYSEECFHACVAGCGYKFDVEAEIVNKVKPKRPPPPPPKPQPPPPP 120
Query: 121 ---VEQLDPP-EDMHGISA 135
+ + PP ED+ SA
Sbjct: 121 PRSQKPMQPPTEDVLATSA 139
>ref|XP_474377.1| OSJNBb0017I01.18 [Oryza sativa (japonica cultivar-group)]
gi|32487404|emb|CAE05738.1| OSJNBb0017I01.18 [Oryza
sativa (japonica cultivar-group)]
Length = 138
Score = 185 bits (470), Expect = 2e-46
Identities = 79/123 (64%), Positives = 96/123 (77%), Gaps = 3/123 (2%)
Query: 1 MMPQQWASPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKD 60
M +W PCG+ CT KYA+L QIPWRVFCKKGC++DG+TW+EC+ +C ICYKDPVL+D
Sbjct: 1 MFSGEWTPPCGSCCTKKYASLVQIPWRVFCKKGCDADGDTWDECISKCTEICYKDPVLED 60
Query: 61 QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKPKPQP 120
+WSAYIDRSPG SYS ECF+ACVSGCGY+F++ EK E+I PNRP KP P P P
Sbjct: 61 HQWSAYIDRSPGQDSYSLECFNACVSGCGYRFDIPAEKVEQIKPNRPSKPPP---PPPPA 117
Query: 121 VEQ 123
VE+
Sbjct: 118 VER 120
>dbj|BAD44139.1| putative protein [Arabidopsis thaliana]
Length = 107
Score = 112 bits (281), Expect = 1e-24
Identities = 53/93 (56%), Positives = 64/93 (67%), Gaps = 4/93 (4%)
Query: 47 ECDHICYKDPVLKDQKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPNR 106
+C ICYKDPVLKD+ W+A IDRSPG A YSEECFHACV+GCGYKF+V+ E K+ P R
Sbjct: 15 DCSEICYKDPVLKDRPWTAVIDRSPGDAKYSEECFHACVAGCGYKFDVEAEIVNKVKPKR 74
Query: 107 PLKPAPVQKPKPQP---VEQLDPP-EDMHGISA 135
P P P +P P P + + PP ED+ SA
Sbjct: 75 PPPPPPKPQPPPPPPRSQKPMQPPTEDVLATSA 107
>gb|AAF56795.3| CG33103-PA, isoform A [Drosophila melanogaster]
gi|28572036|ref|NP_788752.1| CG33103-PA, isoform A
[Drosophila melanogaster]
Length = 2894
Score = 37.4 bits (85), Expect = 0.080
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 39/154 (25%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGE---TWEECLEECDH---------------- 50
C N T Y R F GC + T E CL CD
Sbjct: 1858 CANYVTSWYYDTQDQACRQFYYGGCGGNENRFPTEESCLARCDRKPEPTTTTPATRPQPS 1917
Query: 51 ---ICYKDPVLKD-----QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQE----- 97
+C ++P + KW + DR GA + ++ G G +FE + +
Sbjct: 1918 RQDVCDEEPAPGECSTWVLKW--HFDRKIGAC---RQFYYGNCGGNGNRFETENDCQQRC 1972
Query: 98 -KAEKICPNRPLKPAPVQKPKPQP-VEQLDPPED 129
E P P PAP ++P P P V Q P D
Sbjct: 1973 LSQEPPAPTPPRAPAPTRQPDPAPTVAQCSQPAD 2006
>gb|AAF56794.3| CG33103-PB, isoform B [Drosophila melanogaster]
gi|28572038|ref|NP_788751.1| CG33103-PB, isoform B
[Drosophila melanogaster]
Length = 2772
Score = 37.4 bits (85), Expect = 0.080
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 39/154 (25%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGE---TWEECLEECDH---------------- 50
C N T Y R F GC + T E CL CD
Sbjct: 1858 CANYVTSWYYDTQDQACRQFYYGGCGGNENRFPTEESCLARCDRKPEPTTTTPATRPQPS 1917
Query: 51 ---ICYKDPVLKD-----QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQE----- 97
+C ++P + KW + DR GA + ++ G G +FE + +
Sbjct: 1918 RQDVCDEEPAPGECSTWVLKW--HFDRKIGAC---RQFYYGNCGGNGNRFETENDCQQRC 1972
Query: 98 -KAEKICPNRPLKPAPVQKPKPQP-VEQLDPPED 129
E P P PAP ++P P P V Q P D
Sbjct: 1973 LSQEPPAPTPPRAPAPTRQPDPAPTVAQCSQPAD 2006
>gb|AAO84908.1| extracellular matrix protein papilin 3 [Drosophila melanogaster]
Length = 2898
Score = 37.4 bits (85), Expect = 0.080
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 39/154 (25%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGE---TWEECLEECDH---------------- 50
C N T Y R F GC + T E CL CD
Sbjct: 1858 CANYVTSWYYDTQDQACRQFYYGGCGGNENRFPTEESCLARCDRKPEPTTTTPATRPQPS 1917
Query: 51 ---ICYKDPVLKD-----QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQE----- 97
+C ++P + KW + DR GA + ++ G G +FE + +
Sbjct: 1918 RQDVCDEEPAPGECSTWVLKW--HFDRKIGAC---RQFYYGNCGGNGNRFETENDCQQRC 1972
Query: 98 -KAEKICPNRPLKPAPVQKPKPQP-VEQLDPPED 129
E P P PAP ++P P P V Q P D
Sbjct: 1973 LSQEPPAPTPPRAPAPTRQPDPAPTVAQCSQPAD 2006
>gb|AAO84907.1| extracellular matrix protein papilin 2 [Drosophila melanogaster]
Length = 2776
Score = 37.4 bits (85), Expect = 0.080
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 39/154 (25%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGE---TWEECLEECDH---------------- 50
C N T Y R F GC + T E CL CD
Sbjct: 1858 CANYVTSWYYDTQDQACRQFYYGGCGGNENRFPTEESCLARCDRKPEPTTTTPATRPQPS 1917
Query: 51 ---ICYKDPVLKD-----QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQE----- 97
+C ++P + KW + DR GA + ++ G G +FE + +
Sbjct: 1918 RQDVCDEEPAPGECSTWVLKW--HFDRKIGAC---RQFYYGNCGGNGNRFETENDCQQRC 1972
Query: 98 -KAEKICPNRPLKPAPVQKPKPQP-VEQLDPPED 129
E P P PAP ++P P P V Q P D
Sbjct: 1973 LSQEPPAPTPPRAPAPTRQPDPAPTVAQCSQPAD 2006
>sp|P82727|LC12_ARATH Putative low-molecular-weight cysteine-rich protein LCR12
precursor
Length = 84
Score = 36.6 bits (83), Expect = 0.14
Identities = 21/68 (30%), Positives = 39/68 (56%), Gaps = 6/68 (8%)
Query: 18 YAALTQIPWRVFCKKGCNSDGETWEEC-LEECDHICYKDPVLKDQKWSAYIDRSPGAASY 76
++ LT IP + +K C + E ++C L +C +C+K LK + + I++ PG++ Y
Sbjct: 16 FSVLTIIP-KTEAQKRCRQELEPGKQCVLAKCRELCFKQ--LKG--FGSCIEKPPGSSKY 70
Query: 77 SEECFHAC 84
+ CF+ C
Sbjct: 71 TCNCFYNC 78
>ref|NP_077876.1| hypothetical protein UU046 [Ureaplasma parvum serovar 3 str. ATCC
700970] gi|6898994|gb|AAF30451.1| unique hypothetical
[Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|11356875|pir||C82940 hypothetical protein UU046
[imported] - Ureaplasma urealyticum
gi|14195401|sp|Q9PR99|Y046_UREPA Hypothetical protein
UU046
Length = 791
Score = 35.8 bits (81), Expect = 0.23
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 91 KFEVQQEKAEKICPNRP-LKPAPVQKPKPQPVEQLDPP 127
K E+++ + + P +P +KP P+ KPKPQP+ Q PP
Sbjct: 100 KEELKKPEIKPEEPKKPEIKPEPIPKPKPQPIPQPTPP 137
>gb|EAL29612.1| GA12801-PA [Drosophila pseudoobscura]
Length = 718
Score = 35.4 bits (80), Expect = 0.30
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 59 KDQKWSAYIDRSPGAASYSEECFHACVSGCG-YKFEVQQEKAEKICPNRPLKPAPVQK-- 115
+++KWS ++ R S++ A YK + + P KPAP +
Sbjct: 262 ENRKWSTFLQRPDRPVPKSKQQLEAERRAANAYKVTIVKSAPRGTSPMPETKPAPKEATP 321
Query: 116 PKPQPVEQLDPPED 129
P+P+PV++ +PP+D
Sbjct: 322 PEPEPVKEEEPPKD 335
>pir||T26767 hypothetical protein Y39G8B.b - Caenorhabditis elegans
Length = 437
Score = 34.7 bits (78), Expect = 0.52
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 10/67 (14%)
Query: 70 SPGAASYSE---------ECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKPKPQP 120
+PG+A Y + E + G G K E++ + K+ P LKP P +KPKP+P
Sbjct: 236 NPGSALYRKHEDPNLLYNETLQSIAKGHG-KLELKPKPKPKLKPKTKLKPKPKRKPKPKP 294
Query: 121 VEQLDPP 127
+ + P
Sbjct: 295 KHKHNRP 301
>gb|AAN10358.4| CG33196-PB [Drosophila melanogaster] gi|56307416|ref|NP_787974.3|
CG33196-PB [Drosophila melanogaster]
Length = 23015
Score = 34.3 bits (77), Expect = 0.67
Identities = 34/136 (25%), Positives = 48/136 (35%), Gaps = 11/136 (8%)
Query: 2 MPQQWASPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEEC--DHICYKDPVLK 59
+P Q A PC A + C +G+ + EC EC + C K+
Sbjct: 10591 VPVQVAQPCNPSPCGANAVCKERNGVGSCSCLPEYNGDPYTECRPECVLNSDCSKNRACL 10650
Query: 60 DQKWSAYIDRSPGAASYSEECF---HACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKP 116
+ K D PG S EC HA C F + C P PAPV+
Sbjct: 10651 NNKCR---DPCPGVCGVSAECHVINHAPSCSCPSGFT---GNPSQFCREIPRLPAPVEPC 10704
Query: 117 KPQPVEQLDPPEDMHG 132
+P P +++G
Sbjct: 10705 RPSPCGPYSQCREVNG 10720
>ref|ZP_00519548.1| conserved hypothetical protein [Solibacter usitatus Ellin6076]
gi|67866108|gb|EAM61106.1| conserved hypothetical
protein [Solibacter usitatus Ellin6076]
Length = 352
Score = 33.5 bits (75), Expect = 1.1
Identities = 27/94 (28%), Positives = 42/94 (43%), Gaps = 11/94 (11%)
Query: 46 EECDHICYKDPVLKDQKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPN 105
E+ D K+P L D W A +D S A ++EE + + G K + E E +C
Sbjct: 244 EDVDKYMRKEPRLLDNVWKAVLDHSLEARGFTEEVYRLDLRGAFTKKD-DAEARELVCKR 302
Query: 106 --------RPLK-PAPVQKPKPQP-VEQLDPPED 129
R L A ++ KP P V+ +D P++
Sbjct: 303 LAAGAGFLRDLAYTAWIESAKPLPRVDPIDQPQN 336
>ref|XP_344590.1| PREDICTED: similar to NF-X1 type zinc finger containing protein
(2J511) [Rattus norvegicus]
Length = 337
Score = 33.5 bits (75), Expect = 1.1
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 9 PCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKD---PVLKDQKWSA 65
PC C H + P C+ C D E C +C+H+C +D P +D +
Sbjct: 56 PCTCDCEHMCTCDCEHPCTRDCEHPCTRDCE--HMCTRDCEHMCTRDCEHPCTRDCEHPC 113
Query: 66 YIDRSPGAASYSEECFHACVSGC 88
D + +C H C C
Sbjct: 114 TRDCEHPC---TRDCEHMCTRDC 133
Score = 33.1 bits (74), Expect = 1.5
Identities = 18/80 (22%), Positives = 29/80 (35%), Gaps = 2/80 (2%)
Query: 9 PCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKDQKWSAYID 68
PC C H + P C+ C D E C +C+H+C +D + +
Sbjct: 144 PCTRDCEHMCTCDCEHPCTRDCEHPCTRDCE--HMCTHDCEHMCTRDCEHTCTRDCEHPC 201
Query: 69 RSPGAASYSEECFHACVSGC 88
+ + +C H C C
Sbjct: 202 TRDCEHTCTRDCEHTCTRDC 221
Score = 32.7 bits (73), Expect = 2.0
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 16/83 (19%)
Query: 9 PCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKD---PVLKDQKWSA 65
PC C H + P C+ C D E C+ +C+H C +D P +D +
Sbjct: 232 PCTRDCEHTCTRDCEHPCTRDCEHPCTRDCE--HPCIRDCEHPCTRDCEHPCTRDCEDPC 289
Query: 66 YIDRSPGAASYSEECFHACVSGC 88
D C H C C
Sbjct: 290 TCD-----------CEHPCTCDC 301
Score = 32.3 bits (72), Expect = 2.6
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKD---PVLKDQKWSAY 66
C C H + P C+ C D E C +C+H+C +D P +D +
Sbjct: 97 CTRDCEHPCTRDCEHPCTRDCEHPCTRDCE--HMCTRDCEHMCTRDCEHPCTRDCEHMCT 154
Query: 67 IDRSPGAASYSEECFHACVSGC 88
D + +C H C C
Sbjct: 155 CDCEHPC---TRDCEHPCTRDC 173
Score = 30.8 bits (68), Expect = 7.5
Identities = 21/83 (25%), Positives = 30/83 (35%), Gaps = 8/83 (9%)
Query: 9 PCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKD---PVLKDQKWSA 65
PC C H + P C+ C D E C +C+H C +D P +D +
Sbjct: 32 PCTRDCEHPCTRDCEHPCTRDCEHPCTCDCE--HMCTCDCEHPCTRDCEHPCTRDCEHMC 89
Query: 66 YIDRSPGAASYSEECFHACVSGC 88
D + +C H C C
Sbjct: 90 TRDCE---HMCTRDCEHPCTRDC 109
Score = 30.8 bits (68), Expect = 7.5
Identities = 21/83 (25%), Positives = 30/83 (35%), Gaps = 8/83 (9%)
Query: 9 PCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKD---PVLKDQKWSA 65
PC C H + P C+ C D E C +C+H+C D P +D +
Sbjct: 24 PCTRDCEHPCTRDCEHPCTRDCEHPCTRDCE--HPCTCDCEHMCTCDCEHPCTRDCEHPC 81
Query: 66 YIDRSPGAASYSEECFHACVSGC 88
D + +C H C C
Sbjct: 82 TRDCE---HMCTRDCEHMCTRDC 101
>emb|CAE57700.1| Hypothetical protein CBG00704 [Caenorhabditis briggsae]
Length = 580
Score = 33.5 bits (75), Expect = 1.1
Identities = 28/125 (22%), Positives = 38/125 (30%), Gaps = 27/125 (21%)
Query: 8 SPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKDQKWSAYI 67
S C N C K +Q C CN C +C +P +
Sbjct: 264 SQCSNVCQQKQYGSSQ------CASSCN----------RSCSRVCQSNPSATGGAAAQTT 307
Query: 68 DRSP---------GAASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKPKP 118
++P A+ C C S C + V Q + C N P Q P
Sbjct: 308 TQAPLKVSIKVLDDGANCMSTCSDTCRSSCSNR--VSQSTCDATCQNTCNSMCPAQAPAQ 365
Query: 119 QPVEQ 123
PV+Q
Sbjct: 366 APVQQ 370
>ref|XP_498678.1| PREDICTED: hypothetical protein XP_498678 [Homo sapiens]
Length = 544
Score = 33.1 bits (74), Expect = 1.5
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 63 WSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKP 116
W+A DRSPGA Y E +C C Y++ + ++ P PAP +P
Sbjct: 97 WAAGRDRSPGAHGYEEGAGASC---CRYQWSPSHRRRHRLIA-APPPPAPAPRP 146
>gb|EAA69216.1| hypothetical protein FG01070.1 [Gibberella zeae PH-1]
gi|46108376|ref|XP_381246.1| hypothetical protein
FG01070.1 [Gibberella zeae PH-1]
Length = 217
Score = 32.7 bits (73), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 103 CPNRPLKPAPVQKPKPQPVEQLDPP 127
C P P PV+KPKP+PV + PP
Sbjct: 74 CSPPPPPPPPVEKPKPKPVPKPSPP 98
>gb|AAC26793.1| laminin alpha chain [Caenorhabditis elegans]
gi|21617790|emb|CAB03385.3| Hypothetical protein T22A3.8
[Caenorhabditis elegans] gi|21615495|emb|CAA15432.3|
Hypothetical protein T22A3.8 [Caenorhabditis elegans]
gi|25145020|ref|NP_492775.2| laminin alpha chain (343.7
kD) (1L197) [Caenorhabditis elegans]
gi|11276916|pir||T43291 laminin alpha chain -
Caenorhabditis elegans
Length = 3102
Score = 32.7 bits (73), Expect = 2.0
Identities = 22/76 (28%), Positives = 27/76 (34%), Gaps = 9/76 (11%)
Query: 10 CGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEEC---DHICYKDPVLKDQKWSAY 66
CG C Q+PW K G NS ++C +C H C D L KWS
Sbjct: 323 CGESCNRCCPLFNQLPW----KPGTNSHPNVCQQC--QCFNHAHSCVYDDELDRNKWSIT 376
Query: 67 IDRSPGAASYSEECFH 82
+ EC H
Sbjct: 377 PEGVYEGGGRCLECAH 392
>gb|AAA96110.3| Prion-like-(q/n-rich)-domain-bearing protein protein 13
[Caenorhabditis elegans]
Length = 572
Score = 32.7 bits (73), Expect = 2.0
Identities = 33/144 (22%), Positives = 54/144 (36%), Gaps = 25/144 (17%)
Query: 7 ASPCGNQCTHKYAALTQI---PWRVFCKKGCNSDGETWEECLEECDHICYKDP-----VL 58
AS C QCT + I + C+ C+S+ + + CL C+ C + V+
Sbjct: 319 ASSCMPQCTPQCVQQQTICAAACQPSCQSSCSSNAQCVQACLPSCESSCVQQQQPSVVVV 378
Query: 59 KDQKWSAYIDRSPGAASYSEECFHA-----------CVSGCGYKFEVQQ---EKAEKICP 104
+D + S P S S++C A C S CG + Q ++ C
Sbjct: 379 QDSQSSCPSACQP---SCSQQCIQAQNLCQSACQPSCQSSCGSNTQCVQACIPSCQQTCG 435
Query: 105 NRPLKPAPVQKPKPQPVEQLDPPE 128
+ VQ+P+ Q P+
Sbjct: 436 QQAQPVIVVQQPQQNNCVQACQPQ 459
>ref|ZP_00263656.1| COG0810: Periplasmic protein TonB, links inner and outer membranes
[Pseudomonas fluorescens PfO-1]
Length = 251
Score = 32.7 bits (73), Expect = 2.0
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 94 VQQEKAEKICPNRPLKPAPVQKP----KPQPVEQLDPPE 128
V+ E A K P KP P++KP KP+PV++ +PP+
Sbjct: 88 VEDEDAVKPPPKPVEKPKPIEKPKPVEKPKPVKKAEPPK 126
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.134 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,508,388
Number of Sequences: 2540612
Number of extensions: 12247891
Number of successful extensions: 50362
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 50051
Number of HSP's gapped (non-prelim): 274
length of query: 135
length of database: 863,360,394
effective HSP length: 111
effective length of query: 24
effective length of database: 581,352,462
effective search space: 13952459088
effective search space used: 13952459088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0336.16