BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177783.1| chlorophyll A-B binding family protein [Arabido... 177 4e-44
dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza ... 177 4e-44
gb|AAP13406.1| At3g27700 [Arabidopsis thaliana] gi|9294474|dbj|B... 102 2e-21
gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thal... 102 2e-21
emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Lycope... 102 2e-21
gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabido... 102 2e-21
gb|AAD28771.1| Lhcb2 protein [Arabidopsis thaliana] gi|25299029|... 102 2e-21
gb|AAD28769.1| Lhcb2 protein [Arabidopsis thaliana] gi|25299022|... 102 2e-21
gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabido... 102 2e-21
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl... 102 2e-21
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl... 102 2e-21
pir||S04125 chlorophyll a/b-binding protein type III precursor -... 102 2e-21
emb|CAA34459.1| unnamed protein product [Sinapis alba] gi|21140|... 101 4e-21
gb|AAN31868.1| putative photosystem II type I chlorophyll a /b b... 101 4e-21
gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabido... 101 4e-21
emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [A... 101 4e-21
gb|AAL67432.1| chlorophyll a/b binding protein [Brassica oleracea] 101 4e-21
gb|AAD48017.1| chlorophyll a/b binding protein [Rumex palustris] 101 4e-21
gb|AAG52048.1| chlorophyll A-B-binding protein 2 precursor, 5' p... 101 4e-21
emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergi... 101 5e-21
>ref|NP_177783.1| chlorophyll A-B binding family protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1| putative chlorophyll A-B
binding protein; 65434-67056 [Arabidopsis thaliana]
gi|25406454|pir||G96793 hypothetical protein F14G6.17
[imported] - Arabidopsis thaliana
Length = 327
Score = 177 bits (450), Expect = 4e-44
Identities = 82/97 (84%), Positives = 87/97 (89%)
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLGIYLPGDINYPGG LFDPLNLS+DP AF +LKVKEIKNGRLAM
Sbjct: 229 VGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAM 288
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGSL 97
+AWLGFY QAA TGKGPVQNL+DH SDP HNNL+ L
Sbjct: 289 VAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
>dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 321
Score = 177 bits (450), Expect = 4e-44
Identities = 80/96 (83%), Positives = 89/96 (92%)
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLG+YLPGDINYPGGALFDPL LSKDP AF +LKVKEIKNGRLAM
Sbjct: 224 VGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAM 283
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGS 96
+AWLGFY+QAA+TGKGP+QNL++H SDP HNN+L S
Sbjct: 284 VAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSS 319
Score = 35.4 bits (80), Expect = 0.34
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G E R+ G E +L G+ YPG FD L +DP AFA EI + R AM+
Sbjct: 103 GDERPRWLGPVPYE-YPAHLTGE--YPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 159
Query: 62 AWLGFYMQAALTGKGPVQNLLDHFSDP 88
A LG + L G V HF +P
Sbjct: 160 AALGVVVPELLDLFGVV-----HFVEP 181
>gb|AAP13406.1| At3g27700 [Arabidopsis thaliana] gi|9294474|dbj|BAB02693.1| light
harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana] gi|4741950|gb|AAD28772.1| Lhcb2 protein
[Arabidopsis thaliana] gi|13899125|gb|AAK48984.1| light
harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana] gi|15232249|ref|NP_189406.1| chlorophyll A-B
binding protein (LHCB2:4) [Arabidopsis thaliana]
gi|25299028|pir||T52322 chlorophyll a/b-binding protein
Lhcb2 [imported] - Arabidopsis thaliana
Length = 266
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 181 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 238 GPIENLFDHIADPVANN 254
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 109 GALGCTFPEILSKNG 123
>gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding
protein [Arabidopsis thaliana]
Length = 267
Score = 102 bits (255), Expect = 2e-21
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TG
Sbjct: 181 EPLGE--AEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 238 KGPIENLADHLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.053
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Lycopersicon esculentum]
gi|115813|sp|P27522|CB13_LYCES Chlorophyll a-b binding
protein 8, chloroplast precursor (LHCI type III CAB-8)
Length = 273
Score = 102 bits (255), Expect = 2e-21
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
GD YPGG LF+PL KD ++ ELK+KEIKNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLL 255
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 256 DHLADPVNNNVLTSLKF 272
>gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|4741946|gb|AAD28770.1| Lhcb2 protein [Arabidopsis
thaliana] gi|4585935|gb|AAD25595.1| putative chlorophyll
a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20
[Arabidopsis thaliana] gi|17064974|gb|AAL32641.1|
putative chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20
[Arabidopsis thaliana] gi|15224465|ref|NP_178582.1|
chlorophyll A-B binding protein / LHCII type II
(LHCB2.2) [Arabidopsis thaliana] gi|25299030|pir||T52324
probable chlorophyll a/b binding protein At2g05070
[imported] - Arabidopsis thaliana
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>gb|AAD28771.1| Lhcb2 protein [Arabidopsis thaliana] gi|25299029|pir||T52323
chlorophyll a/b-binding protein Lhcb2 [imported] -
Arabidopsis thaliana
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>gb|AAD28769.1| Lhcb2 protein [Arabidopsis thaliana] gi|25299022|pir||T52326
chlorophyll a/b-binding protein Lhcb2 [imported] -
Arabidopsis thaliana
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2
[Arabidopsis thaliana] gi|15450349|gb|AAK96468.1|
At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b
binding protein [Arabidopsis thaliana]
gi|15224471|ref|NP_178585.1| chlorophyll A-B binding
protein / LHCII type II (LHCB2.1) (LHCB2.3) [Arabidopsis
thaliana]
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplast precursor (LHCII
type I CAB-E) (LHCP) gi|170212|gb|AAA34056.1|
chlorophyll a/b-binding protein-E
Length = 266
Score = 102 bits (255), Expect = 2e-21
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 180 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
Score = 37.4 bits (85), Expect = 0.090
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 109 GALGCVFPELLARNG 123
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplast precursor (LHCII
type I CAB-C) (LHCP) gi|170210|gb|AAA34055.1|
chlorophyll a/b-binding protein-C
Length = 267
Score = 102 bits (255), Expect = 2e-21
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 181 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 53 GPNRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 110 GALGCVFPELLARNG 124
>pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato
gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 102 bits (255), Expect = 2e-21
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
GD YPGG LF+PL KD ++ ELK+KEIKNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLL 255
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 256 DHLADPVNNNVLTSLKF 272
>emb|CAA34459.1| unnamed protein product [Sinapis alba] gi|21140|emb|CAA33903.1|
chlorophyll a/b-binding polypeptide [Sinapis alba]
gi|115778|sp|P13851|CB21_SINAL Chlorophyll a-b binding
protein 1, chloroplast precursor (LHCII type I CAB-1)
(LHCP)
Length = 266
Score = 101 bits (252), Expect = 4e-21
Identities = 47/69 (68%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 37.0 bits (84), Expect = 0.12
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana] gi|21555860|gb|AAM63949.1|
photosystem II type I chlorophyll a /b binding protein,
putative [Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I
chlorophyll a/b binding protein, putative [Arabidopsis
thaliana] gi|16372|emb|CAA27541.1| chlorophyll a/b
binding protein (LHCP AB 180) [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein
(LHCP AB 65) [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding
protein [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll A-B binding
protein 165/180, chloroplast / LHCII type I CAB-165/180
[Arabidopsis thaliana] gi|18397286|ref|NP_564339.1|
chlorophyll A-B binding protein 2, chloroplast / LHCII
type I CAB-2 / CAB-140 (CAB2A) [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding
protein [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80
[Arabidopsis thaliana] gi|15809862|gb|AAL06859.1|
At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80
[Arabidopsis thaliana] gi|115767|sp|P04777|CB21_ARATH
Chlorophyll a-b binding protein 165/180, chloroplast
precursor (LHCII type I CAB-165/180) (LHCP)
gi|9972355|gb|AAG10605.1| chlorophyll a/b-binding
protein [Arabidopsis thaliana] gi|9972354|gb|AAG10604.1|
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.053
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type
I chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein
(LHCP AB 140) [Arabidopsis thaliana]
gi|15220615|ref|NP_174286.1| chlorophyll A-B binding
protein 2, chloroplast / LHCII type I CAB-2 / CAB-140
(CAB2B) [Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23
[Arabidopsis thaliana] gi|16226883|gb|AAL16289.1|
At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23
[Arabidopsis thaliana] gi|115783|sp|P04778|CB22_ARATH
Chlorophyll a-b binding protein 2, chloroplast precursor
(LHCII type I CAB-2) (CAB-140) (LHCP)
gi|9972353|gb|AAG10603.1| Putative chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.053
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 154 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 212
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 213 HLADPVNNN 221
Score = 38.1 bits (87), Expect = 0.053
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 10 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 67
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 68 HSRWAMLGALGCVFPELLARNG 89
>gb|AAL67432.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 101 bits (252), Expect = 4e-21
Identities = 47/69 (68%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 37.0 bits (84), Expect = 0.12
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>gb|AAD48017.1| chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 101 bits (252), Expect = 4e-21
Identities = 52/77 (67%), Positives = 61/77 (78%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 179 PLGEDL--DKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 235
Query: 76 GPVQNLLDHFSDPFHNN 92
GPV+NL+DH +DP NN
Sbjct: 236 GPVENLVDHIADPVANN 252
Score = 38.9 bits (89), Expect = 0.031
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 50 GPDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 106
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 107 GALGCVFPELLSKNG 121
>gb|AAG52048.1| chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 170 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 228
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 229 HLADPVNNN 237
Score = 38.1 bits (87), Expect = 0.053
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 26 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 83
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 84 HSRWAMLGALGCVFPELLARNG 105
>emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
gi|99492|pir||S22522 chlorophyll a/b-binding protein
(cab-6) precursor - Japanese black pine
Length = 266
Score = 101 bits (251), Expect = 5e-21
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 181 PLGEGL--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 238 GPIENLYDHLADPVANN 254
Score = 37.4 bits (85), Expect = 0.090
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRPKYLGPFS-EGTPSYLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 109 GALGCLFPELLAKNG 123
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,929,607
Number of Sequences: 2540612
Number of extensions: 7980894
Number of successful extensions: 15778
Number of sequences better than 10.0: 505
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 14833
Number of HSP's gapped (non-prelim): 932
length of query: 104
length of database: 863,360,394
effective HSP length: 80
effective length of query: 24
effective length of database: 660,111,434
effective search space: 15842674416
effective search space used: 15842674416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0335a.8