BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.6
(109 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42306.1| putative retroelement pol polyprotein [Arabidops... 84 8e-16
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 84 8e-16
emb|CAB77838.1| putative reverse transcriptase [Arabidopsis thal... 78 5e-14
gb|AAM47977.1| putative retroelement pol polyprotein [Arabidopsi... 75 3e-13
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 74 1e-12
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 74 1e-12
gb|AAF69161.1| F27F5.19 [Arabidopsis thaliana] gi|25301673|pir||... 74 1e-12
dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hy... 73 2e-12
emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7... 72 3e-12
emb|CAB78071.1| putative protein [Arabidopsis thaliana] gi|25407... 69 3e-11
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis... 68 5e-11
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 68 5e-11
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 67 1e-10
gb|AAU89730.1| putative polyprotein [Solanum tuberosum] 67 1e-10
gb|AAT71979.1| At5g39185 [Arabidopsis thaliana] 66 2e-10
emb|CAB81199.1| putative protein [Arabidopsis thaliana] gi|45393... 64 9e-10
pir||E96608 probable retroelement polyprotein F25P12.89 [importe... 64 9e-10
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 64 9e-10
dbj|BAC42502.1| unknown protein [Arabidopsis thaliana] 61 7e-09
gb|AAF79663.1| F9C16.10 [Arabidopsis thaliana] 60 1e-08
>dbj|BAC42306.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|9758772|dbj|BAB09070.1| unnamed protein product
[Arabidopsis thaliana] gi|28973203|gb|AAO63926.1|
unknown protein [Arabidopsis thaliana]
Length = 357
Score = 84.0 bits (206), Expect = 8e-16
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P +VS+ L SN+++W A+ VAL KNK+ FVDG+LPRP E +P W R N++V
Sbjct: 75 PGTTIVSEVLDGSNFSSWKIAMFVALDAKNKIAFVDGTLPRPPEFDPSFRVWSRCNSMVK 134
Query: 76 SWIFNAVSKDITTSMYS-DTASEIYHGLDTR 105
SWI N+V+K I S+ + A+EI+ LDTR
Sbjct: 135 SWILNSVTKQIYKSILRFNDAAEIWKDLDTR 165
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 84.0 bits (206), Expect = 8e-16
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P +VS L +NYN WS A+ +AL KNK+ F+DGS PRPEE N L W R N++V
Sbjct: 62 PGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLRIWSRCNSMVK 121
Query: 76 SWIFNAVSKDITTSMYS-DTASEIYHGLDTR 105
SWI N+V+++I S+ S D A++I++ L R
Sbjct: 122 SWILNSVNREIYGSILSFDDAAQIWNDLHNR 152
>emb|CAB77838.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|4206207|gb|AAD11595.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|4263040|gb|AAD15309.1|
putative reverse transcriptase [Arabidopsis thaliana]
gi|25407205|pir||G85044 probable reverse transcriptase
[imported] - Arabidopsis thaliana
Length = 374
Score = 78.2 bits (191), Expect = 5e-14
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 18 PRLVSQP--LTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P LV P L ++Y TW A+ ++ KNK+ FVDGS+P+P++D+P W R N++V
Sbjct: 78 PGLVLAPELLDGNSYGTWIIAMTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVK 137
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTR 105
SW+ N+VSK+I TS +Y TA+ I+ L TR
Sbjct: 138 SWLLNSVSKEIYTSILYFPTAAAIWKDLYTR 168
>gb|AAM47977.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|4263646|gb|AAD15368.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|17065314|gb|AAL32811.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|25411380|pir||H84495 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 411
Score = 75.5 bits (184), Expect = 3e-13
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P +V+ L SNYN+WS A+ ++L KNK+ FVDGSL RP D+ W R N++V
Sbjct: 75 PGLSIVAHVLDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMVK 134
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTR 105
SWI N V+K+I S +Y + A E++ L TR
Sbjct: 135 SWILNVVNKEIYDSILYYEDAVEMWTDLFTR 165
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 73.6 bits (179), Expect = 1e-12
Identities = 39/95 (41%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P ++S L E+ Y WS A+ ++L KNK+ FVDGSLPRP E +P W R N++V
Sbjct: 74 PGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVK 133
Query: 76 SWIFNAVSKDITTSMYS-DTASEIYHGLDTRRSTT 109
SW+ N+VS I S+ + A++I+ L R + T
Sbjct: 134 SWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLT 168
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 73.6 bits (179), Expect = 1e-12
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P ++S L E+NY WS A+L++L KNK F+DG+L RP E + W R N++V
Sbjct: 70 PGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVK 129
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTRRSTT 109
SW+ N+VS I S + + AS+I+ L++R + T
Sbjct: 130 SWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVT 164
>gb|AAF69161.1| F27F5.19 [Arabidopsis thaliana] gi|25301673|pir||F96509 protein
F27F5.19 [imported] - Arabidopsis thaliana
Length = 1309
Score = 73.6 bits (179), Expect = 1e-12
Identities = 37/87 (42%), Positives = 57/87 (64%), Gaps = 1/87 (1%)
Query: 20 LVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIF 79
+VS L ++YN WS A+ ++L KNK+ FVDGSLPRP+ + W R N++V +W+
Sbjct: 80 IVSHVLDGTSYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFRIWSRCNSMVKTWLL 139
Query: 80 NAVSKDITTS-MYSDTASEIYHGLDTR 105
N VSK+I S +Y + A E+++ L +R
Sbjct: 140 NVVSKEIYDSILYYEDAVEMWNDLFSR 166
>dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
Length = 463
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P L++ S+Y W R VL++LS KNK+ F+ G+ +P++++ W R +++V+
Sbjct: 45 PGMNLINTSFDGSSYGNWKRGVLISLSAKNKLGFITGAYKKPDKEDLLFEQWRRCSDMVL 104
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTR 105
+W+ N++SK+I S +YS TA E++ L+ R
Sbjct: 105 AWLLNSLSKEIAESVLYSQTAQELWQELEQR 135
>emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7488558|pir||T14517
hypothetical protein 1 - wild cabbage transposon Melmoth
Length = 1131
Score = 72.0 bits (175), Expect = 3e-12
Identities = 37/91 (40%), Positives = 56/91 (60%), Gaps = 1/91 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P +L+S L SNY+ W+ A+ +AL KNK+ FVDG+L RP+ +P W R N++V
Sbjct: 23 PGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSMVK 82
Query: 76 SWIFNAVSKDITTSMYS-DTASEIYHGLDTR 105
SW+ N+VS I S+ + A++I+ L R
Sbjct: 83 SWLLNSVSPQIYRSILRLNDAADIWRDLHGR 113
>emb|CAB78071.1| putative protein [Arabidopsis thaliana] gi|25407502|pir||F85096
hypothetical protein AT4g09480 [imported] - Arabidopsis
thaliana
Length = 290
Score = 68.9 bits (167), Expect = 3e-11
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 8 FLPSSFRWPRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSW 67
FL SS + + +P + S +++W R+V +AL+++NK+ F+DG++P+P + SW
Sbjct: 16 FLHSSDQAGLILVSDRPSSGSEFHSWRRSVRMALNVRNKLGFIDGTIPQPPSTHRDAGSW 75
Query: 68 IRNNNVVISWIFNAVSKDITTS-MYSDTASEIYHGLDTR 105
R N++V +W+ N+VSK I S ++ TA I+ L +R
Sbjct: 76 SRCNDMVATWLMNSVSKKIGQSLLFMSTAESIWKNLLSR 114
>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana]
gi|7488175|pir||G71406 probable retrovirus-related
polyprotein - Arabidopsis thaliana
Length = 1489
Score = 68.2 bits (165), Expect = 5e-11
Identities = 33/88 (37%), Positives = 60/88 (67%), Gaps = 2/88 (2%)
Query: 20 LVSQPLTE-SNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
LVS LT S++++W R++L+AL+++NK+ F++G++ +P ED+ +W R N++V +W+
Sbjct: 46 LVSDRLTTASDFHSWRRSILMALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWL 105
Query: 79 FNAVSKDITTS-MYSDTASEIYHGLDTR 105
N+V K I S +Y T I++ L +R
Sbjct: 106 MNSVDKKIGQSLLYIATVQGIWNNLLSR 133
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 68.2 bits (165), Expect = 5e-11
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 4 HCQSFLPSSFRWPRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQ 63
H FL SS P +VS L +NYN WS A+ ++L KNK+ FVDGSLPRP+ +
Sbjct: 65 HSPYFLHSSDH-PGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRM 123
Query: 64 LNSWIRNNNVVISWIFNAVSKDITTSMYSDTAS 96
W R N++V +W+ N V T M++D S
Sbjct: 124 FKIWSRCNSMVKTWLLNVV-----TEMWNDLFS 151
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 67.0 bits (162), Expect = 1e-10
Identities = 32/67 (47%), Positives = 48/67 (70%), Gaps = 1/67 (1%)
Query: 40 ALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSKDITTS-MYSDTASEI 98
++ KNK+ FVDGS+P+P++D+P W R N++V SW+ N+VSK+I TS +Y TA+ I
Sbjct: 4 SIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAI 63
Query: 99 YHGLDTR 105
+ L TR
Sbjct: 64 WKDLYTR 70
>gb|AAU89730.1| putative polyprotein [Solanum tuberosum]
Length = 1280
Score = 66.6 bits (161), Expect = 1e-10
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P L++ + W R++L+ALS K K+ F++G P+ +P W N++V+
Sbjct: 33 PGMNLINSIFDGRGFAGWRRSILIALSAKKKLGFINGVCKTPDLLSPDYEQWSCCNDMVM 92
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTRRSTT 109
SW+ NA+SKDI S +YS TA E++ L+ R T
Sbjct: 93 SWLLNAMSKDIRDSVIYSKTAKELWDSLEQRFGRT 127
>gb|AAT71979.1| At5g39185 [Arabidopsis thaliana]
Length = 348
Score = 66.2 bits (160), Expect = 2e-10
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 20 LVSQPLTES-NYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
L+S+PL NY+ W+ + +AL + K F DG++P+P+E NP + WI NN +V+SW+
Sbjct: 35 LISKPLLRGPNYDEWATNLRLALKARKKFGFADGTIPQPDETNPDFDDWIANNALVVSWM 94
Query: 79 FNAVSKDITTSM 90
+ + + TSM
Sbjct: 95 KLTIHESLATSM 106
>emb|CAB81199.1| putative protein [Arabidopsis thaliana] gi|4539372|emb|CAB40066.1|
putative protein [Arabidopsis thaliana]
gi|7486140|pir||T04293 hypothetical protein F25I24.190 -
Arabidopsis thaliana
Length = 294
Score = 63.9 bits (154), Expect = 9e-10
Identities = 32/88 (36%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Query: 20 LVSQPL-TESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
LVS+ L T S++++W R++ +AL+++NK+ F+DG++ +P D+ +W R N+ V +W+
Sbjct: 47 LVSERLNTASDFHSWRRSIWMALNVRNKLGFIDGTIVKPPLDHRDYGAWSRCNDTVSTWL 106
Query: 79 FNAVSKDITTS-MYSDTASEIYHGLDTR 105
N+VSK I S ++ TA I+ + +R
Sbjct: 107 MNSVSKKIGQSLLFIPTAEGIWKNMLSR 134
>pir||E96608 probable retroelement polyprotein F25P12.89 [imported] -
Arabidopsis thaliana gi|9954746|gb|AAG09097.1| Putative
retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 63.9 bits (154), Expect = 9e-10
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 20 LVSQPLTES-NYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
L+S+PL NY+ W+ + +AL + K F DGS+P+P E +P W NN +V+SW+
Sbjct: 36 LISKPLLRGPNYDEWATNLRLALKARKKFGFADGSIPQPVETDPDFEDWTANNALVVSWM 95
Query: 79 FNAVSKDITTSM-YSDTASEIYHGLDTR 105
+ + ++TSM + D + E++ + R
Sbjct: 96 KLTIDETVSTSMSHLDDSHELWTHIQKR 123
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
score: 11.19) [Arabidopsis thaliana]
gi|7486705|pir||T01879 hypothetical protein F8M12.17 -
Arabidopsis thaliana
Length = 1633
Score = 63.9 bits (154), Expect = 9e-10
Identities = 32/88 (36%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Query: 20 LVSQPL-TESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
LVS+ L T S++++W R++ +AL+++NK+ F+DG++ +P D+ +W R N+ V +W+
Sbjct: 47 LVSERLNTASDFHSWRRSIWMALNVRNKLGFIDGTIVKPPLDHRDYGAWSRCNDTVSTWL 106
Query: 79 FNAVSKDITTS-MYSDTASEIYHGLDTR 105
N+VSK I S ++ TA I+ + +R
Sbjct: 107 MNSVSKKIGQSLLFIPTAEGIWKNMLSR 134
>dbj|BAC42502.1| unknown protein [Arabidopsis thaliana]
Length = 144
Score = 60.8 bits (146), Expect = 7e-09
Identities = 30/63 (47%), Positives = 40/63 (62%)
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P +VS L +NYN+WS A+ ++L KNK+ VDGSL RP ED+ W R N++V
Sbjct: 75 PGLTIVSHILDGTNYNSWSIAMKISLDAKNKLGLVDGSLLRPSEDDLSFRIWSRCNSMVK 134
Query: 76 SWI 78
SWI
Sbjct: 135 SWI 137
>gb|AAF79663.1| F9C16.10 [Arabidopsis thaliana]
Length = 238
Score = 60.1 bits (144), Expect = 1e-08
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 20 LVSQPLT-ESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWI 78
L+SQPL NY+ WS + +AL + K F DGS+P+P++D+ W NN +V+SWI
Sbjct: 166 LISQPLLPRPNYDKWSINIRLALQAQKKFGFADGSIPKPDDDSEDYEDWCANNALVVSWI 225
Query: 79 FNAVSKDITTS 89
+ + + +S
Sbjct: 226 KLTIVETLRSS 236
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,852,952
Number of Sequences: 2540612
Number of extensions: 7551074
Number of successful extensions: 16751
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 16652
Number of HSP's gapped (non-prelim): 122
length of query: 109
length of database: 863,360,394
effective HSP length: 85
effective length of query: 24
effective length of database: 647,408,374
effective search space: 15537800976
effective search space used: 15537800976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0335a.6