BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0331c.2
(1291 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 944 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 721 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 718 0.0
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 642 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 595 e-168
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 594 e-168
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 593 e-167
ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultiv... 593 e-167
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 593 e-167
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 592 e-167
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 592 e-167
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 591 e-167
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 590 e-166
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 570 e-161
gb|AAL76007.1| prpol [Zea mays] 565 e-159
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 561 e-158
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar... 546 e-153
gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cul... 538 e-151
gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cul... 526 e-147
gb|AAN04936.1| Putative retroelement [Oryza sativa (japonica cul... 526 e-147
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 944 bits (2441), Expect = 0.0
Identities = 505/1220 (41%), Positives = 736/1220 (59%), Gaps = 95/1220 (7%)
Query: 126 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 185
PF++D+ + +PD + L ++ Y G +DP +HL F T+M + V C++FP++ +
Sbjct: 211 PFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLRE 270
Query: 186 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 245
+ WF+ LP SI++F KF Q++ ++ + L N++Q+ GESL+ +M R+S
Sbjct: 271 GPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFS 330
Query: 246 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYILDEEDDAFKR 305
+ + + P + +LPG L ++P +M+E+R RA+ ++ EE + R
Sbjct: 331 KVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEEHIDYHR 390
Query: 306 KRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQ 365
K + E+ + K RP PT D E+ RP
Sbjct: 391 K-----------------TYAENTDNSKGIRP--------PTIP------TDRERHRP-- 417
Query: 366 SKSHRQREETDMVMNTDLSDMLQGARDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDT 425
++ R T +++ +L A L+ P P +A+ K C++HR+ GH T
Sbjct: 418 NRGPRFHNYTPLIV--PRGKVLDEALQIELIPTLR-PSQTPPNADTSKRCQYHRNYGHTT 474
Query: 426 DDCWTLQREIDKLIRAGY------------------------QGNRQGLWRNGGDQNKAH 461
+ C L+ +I++L++AG+ G R R+ ++
Sbjct: 475 EGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRR 534
Query: 462 KREE----------ERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGG 511
KR E E + + + KQ+ + A G P IN IAGGF GG
Sbjct: 535 KRSESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPV---SLGQPPQEINYIAGGFAGG 591
Query: 512 GDTHAARKRHVRAVNSVHEVAFGFVH--PDITISMADFEGIKPHKDDPIVVQLRMNSFNV 569
G +++ARK+H+RA+ SVH P IT + DF I P +DDP+V+ + ++ F +
Sbjct: 592 GCSNSARKKHLRAIQSVHSTPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAI 651
Query: 570 RRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDE 629
+VL+DQGSS DI+Y + F K+ + + ++ PY +VGF+ E+V +G+IDL T FG+D
Sbjct: 652 AKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDY 711
Query: 630 CARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMA 689
++ + +RYL++ SYN+++GR ++NRL A++ST HLA+K+P +G + + +DQK A
Sbjct: 712 LSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTA 771
Query: 690 RECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRP--------TPIEETKAL 741
RECY L + + E + + R GR +R P + +
Sbjct: 772 RECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDLDPRLDDPRM 831
Query: 742 KFG-----------DRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICH 790
+ G DR +GT L + + K L +N DLFAW+ DMPG+ + I H
Sbjct: 832 EAGEDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITH 891
Query: 791 RLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGK 850
RL++ +P++ +R+LG ++ KA ++E DKL+ A FI++ Y TWLANVV+VKK NGK
Sbjct: 892 RLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGK 951
Query: 851 WRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTA 910
WRMCVDYTDLNKACPKDSYPLP+ID LVDGA+G+++LS +DAYSG +QI+M+ D +KTA
Sbjct: 952 WRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTA 1011
Query: 911 FMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQD 970
F T N+ Y MPFGLKNAGATYQRLMD VF +GRN+EVYVDD++VKS H D
Sbjct: 1012 FRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSD 1071
Query: 971 LEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKE 1030
L+E F +R++ MRLNPEKC FGV+GGKFLGFM+T RGIE NPEKCKAI +M+SP +KE
Sbjct: 1072 LKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKE 1131
Query: 1031 VQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSK 1090
+QRL R+ +LSRF+PK +R+ P K L+K FEWT ECE+ F +LK L+SPP++ K
Sbjct: 1132 IQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFLASPPVIQK 1191
Query: 1091 PIQGHPLHLYFAVSDGALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVT 1150
P P+ +Y AVS+ A+SS ++QEI E R VYFVS L AE RYQ +EK A A+++T
Sbjct: 1192 PNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQMVEKVAFALVIT 1251
Query: 1151 ARRLRPYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLA 1210
ARR+R YFQ+ V VRT+ P+ ++L KPDL+GR++ W+VELSE+ ++Y RGA+ +Q+LA
Sbjct: 1252 ARRMRMYFQNHKVIVRTNYPIMKILTKPDLAGRMIGWAVELSEFHIEYQPRGAIKSQALA 1311
Query: 1211 DFVVELTPDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQA 1270
DF ELTP ER +WTL+VDGSSNS SGAGV LEGPGE+V+EQ++KFEFK +NNQA
Sbjct: 1312 DFTAELTPYLTERT-PRWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQA 1370
Query: 1271 EYEALIAGLKLAREVKIRSL 1290
EYEA+IAGL LA E+++ ++
Sbjct: 1371 EYEAIIAGLHLAIELEVTNI 1390
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 721 bits (1861), Expect = 0.0
Identities = 452/1199 (37%), Positives = 652/1199 (53%), Gaps = 116/1199 (9%)
Query: 126 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKM----VIIAASDAVKCRMFPS 181
PF+ + +V+I K + L+SY+G +DPK+ L FN + + I DA +C++F
Sbjct: 203 PFTRRITNVSIRGAQK-IKLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIE 261
Query: 182 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYM 241
A WF+ L SI +F +S FL ++ + DL++I Q ESL+ ++
Sbjct: 262 HLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFV 321
Query: 242 ARYS--AASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMEEMRARASTYILDE 298
R+ ++ V DE A +A +N + +T ++E+ RAS +I E
Sbjct: 322 DRFKLVVTNITVPDE---AAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELE 378
Query: 299 EDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDY 358
E+ K K +++ A KD+ G D
Sbjct: 379 EE-----KLILARKHNSTKTPACKDAVVIKVGPD-----------------------DSN 410
Query: 359 EQRRPWQSKSHRQREETDMVMNTDLSDMLQGARDANLVDEPEA-PKYQPRDANPKKWCEF 417
E R+ R+ T +++T+ D + D P A P Y CE+
Sbjct: 411 EPRQHLDRNPSAGRKPTSFLVSTETPDAKPWNKYIRDADSPAAGPMY----------CEY 460
Query: 418 HRSAGHDTDDCWTLQREIDKLIRAG---YQGNRQGLWRNGGDQNKAHKREEERADTKGKK 474
H+S H T++C LQ + ++G + +R + +N+ R+ TK
Sbjct: 461 HKSRAHSTENCRFLQGLLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQTKPPT 520
Query: 475 KQESAAIATKGADDTFA--QHSGPPVGT-------INTIAGGFGGGGDTHAARKRHVRAV 525
E I + ADD A Q +G + ++ I GG D+ + K++ +
Sbjct: 521 PAEQGIITS--ADDPAAKRQRNGKAIAAEPVVVRQVHVIMGGLQNCSDSVRSIKQYRKKA 578
Query: 526 NSVHEVAFGFV-----HPD----ITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQ 576
V VA+ +P+ I+ + D EG+ +DP+VV+L ++ V RVL+D
Sbjct: 579 EMV--VAWPSSTSTTRNPNQSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDT 636
Query: 577 GSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKV 636
GSS D+I+ D + +TD + P + L GF G+ VM G I L G + V
Sbjct: 637 GSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVG----GLIAWV 692
Query: 637 RYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNNC 696
+++V+ A YNVI+G ++++ A+ ST H VK+P +N
Sbjct: 693 KFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPT------------------HNGI 734
Query: 697 LNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLTE 756
L K A R YE + L ++ P R + +G ++
Sbjct: 735 FTLRAPKEAKTPSRSYE----ESELCRTEMVNIDESDPT----------RCVGVGAEISP 780
Query: 757 EQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKAV 816
L LL N FAWS +DM GIDP H L ++P+ KPV RR+LG ++ +AV
Sbjct: 781 SIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAV 840
Query: 817 QQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDS 876
+EV+KLL A I EVKYP WLAN V+VKK NGKWR+CVDYTDLNKACPKDSYPLP ID
Sbjct: 841 NEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDR 900
Query: 877 LVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQR 936
LV+ SGN LLS MDA+SG +QI MH D++KT+F+T R YCY+ M FGLKNAGATYQR
Sbjct: 901 LVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQR 960
Query: 937 LMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQG 996
++++ A Q+GR +EVY+DDM+VKS++ DH + L + F + + M+LNP KC FGV
Sbjct: 961 FVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTS 1020
Query: 997 GKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFF 1056
G+FLG+++T RGIE NP++ +AI ++ SP N +EVQRLTGRIAAL+RF+ +S D+ PF+
Sbjct: 1021 GEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFY 1080
Query: 1057 KCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVMLQEI 1116
L++ F+W + EEAF +LK+ LS+PPIL KP G L+LY AVSD A+SSV+++E
Sbjct: 1081 NLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVRED 1140
Query: 1117 DGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQ 1176
GE R +++ S +L AE RY IEKAALAV+ +AR+LRPYFQS + V TD PLR L
Sbjct: 1141 RGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLRVALH 1200
Query: 1177 KPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTPDRFERV-----DTQWTLF 1231
P SGR+ W+VELSEY + + R A+ +Q LADF++EL ER +W+L+
Sbjct: 1201 SPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEEWSLY 1260
Query: 1232 VDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSL 1290
VDGSS++ GSG G+ L P VLEQS + F ATNN AEYE LIAGL+LA ++I ++
Sbjct: 1261 VDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTI 1319
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 718 bits (1854), Expect = 0.0
Identities = 447/1324 (33%), Positives = 696/1324 (51%), Gaps = 76/1324 (5%)
Query: 8 QHHSPMRQRISPPRQPHRVVLDSPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPE- 66
Q H + +I P QPH + + P RT Q+ +P P P + + + +
Sbjct: 215 QAHPVLPNQIQIP-QPHILQSNIP-RTQPPQNDTPQIQVPQTQIPQIQTSLPNFTHTQST 272
Query: 67 NSPAPEQQPAVTQE------QWRHLMRSIGNIQQRNEHLQ-------AQLDFYRREQRDD 113
N+ A + V Q Q +M G I Q H+Q F +
Sbjct: 273 NTQAAQNHHQVPQGFSLFHMQQPEMMFEQGYIPQMANHIQYAGQIPNQAFQFQPTQPYFQ 332
Query: 114 GSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDA 173
+R D+ P S++++ P N K + Y GD+DP ++L + T + D
Sbjct: 333 PTRAIDTK---NPLSQNLQMAPWPINFKLSNITKYKGDTDPNEYLRVYETAVEAAGGDDT 389
Query: 174 VKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQE 233
K ++ P+ + A++W+TT+P +I ++ F F +P +DLY ++Q
Sbjct: 390 TKAKILPTMLEGVALSWYTTIPPMTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLP 449
Query: 234 GESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARAST 293
GE+L+ ++ ++S ++ + A K LLPG L L R ++ +++ R +
Sbjct: 450 GETLRSFIVKFSRVRCQIRHVDDEMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERMES 509
Query: 294 YILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYP 353
+ EED+ ++ + G KK S + G++Q KG++ KP K+ Y
Sbjct: 510 FARGEEDELRVQEEEAVLLG-------KKQSKNKQISQGEEQ---KGENTGKPWKKFKYD 559
Query: 354 RRDDYEQRRPW--------QSKSHRQREETDMVMNT------DLSDMLQGARDANLVDEP 399
R D +++ + + K Q + T N R
Sbjct: 560 YRQDQKKQVNFIGDGSNNEREKGKHQWDNTRRGRNNWGQSGKGRGQWWNSGRGRGRWWNN 619
Query: 400 EAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNK 459
E K + + K+C+ H GH T++C++ I + RQ N+
Sbjct: 620 ERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQMTHLLEKHVNR 679
Query: 460 AHKREEERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARK 519
+ E D +G+ E+ + A + P IN I GG G ++ RK
Sbjct: 680 YENKYEGARDQRGQNAIEAPQVMKIEAIEEV------PKRVINAITGGSSLGVESKRQRK 733
Query: 520 RHVRAVNSVHEVAFG----FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 575
+VR VN V + I+ D EGI DP+VV + + V+RVL+D
Sbjct: 734 AYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLID 793
Query: 576 QGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 635
GSSAD+++ DAF K+ + ++ LT L GF G+QV G I L +FG+ R +
Sbjct: 794 GGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEE 853
Query: 636 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNN 695
+ + V+ + YN I+GR+T+N A+I ++ +K P G + ++ +Q AR+
Sbjct: 854 IVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGLRGVI-TVRGEQLAARK---- 908
Query: 696 CLNLYGKKSALVGHRCYEIEASDENLDPRGEG-RVNRPTPIEETKALKFGDRT----LKI 750
L G S H D+ +GE ++ +P P +TK ++ + + I
Sbjct: 909 -YELQGTPSVKGVH------VVDQK---QGEYIKIQKPIPEGKTKKVQLDEHNPGKFILI 958
Query: 751 GTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGG 810
G L + E + K++ EN+ +FAWS ++ G+D + I H LA+ KP RR+
Sbjct: 959 GENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMST 1018
Query: 811 DKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYP 870
D+ +A + E++KLL A+ IREV +P WLAN V+VKKANGKWRMC+D+TDLNKACPKD +P
Sbjct: 1019 DRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFP 1078
Query: 871 LPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNA 930
LP ID LVD +G EL+S +DAYSG HQ+ M DE+KT+F+T YC+ MPFGLKNA
Sbjct: 1079 LPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGLKNA 1138
Query: 931 GATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKC 990
GAT+ RL+ +V A Q+GRN+E Y+DD++VKS + H +DL+E F +RK +++LNPEKC
Sbjct: 1139 GATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNPEKC 1198
Query: 991 YFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGD 1050
FGV+ GK LGF+++ RGIE NP+K AI QM+ P N +EVQRLTGR+A+LSRFL KS +
Sbjct: 1199 VFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAE 1258
Query: 1051 RSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSS 1110
+ PFFK LR FEWTAEC++AF LK+ L P L+ P +G PL +Y A + +S+
Sbjct: 1259 KGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPATVSA 1318
Query: 1111 VMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLP 1170
V++QE + VYFVS LQG + RY ++EK A+++ +R+LR YF S + + + P
Sbjct: 1319 VLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITIPSAYP 1378
Query: 1171 LRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTPDRFER---VDTQ 1227
+ +VL +++GR+ W++EL + L+Y R A+ +Q LADFV E TP+ E+ V
Sbjct: 1379 IGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVAEWTPNEVEQQEEVKKP 1438
Query: 1228 WTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKI 1287
W +F DG+ N++G+GA ++ P + L+ S++ F +TNN AEYE ++ ++ AR +
Sbjct: 1439 WIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLVFPSTNNTAEYEGVLLAMRKARALGA 1498
Query: 1288 RSLL 1291
R L+
Sbjct: 1499 RRLI 1502
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 642 bits (1656), Expect = 0.0
Identities = 416/1230 (33%), Positives = 616/1230 (49%), Gaps = 78/1230 (6%)
Query: 126 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 185
P SE +++ P K + L +SG +DP+ L+ F + ++ V + F +
Sbjct: 159 PLSEGLQTSPWPTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEG 218
Query: 186 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 245
A+AW++ L GSI ++ + K L F + +T DL+ RQ +GE+L+EY R+
Sbjct: 219 DALAWYSMLRPGSIYSWENLRDKILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFV 278
Query: 246 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYILDEEDDAFKR 305
+ A GL G + L R+ SM E+ Y + D +
Sbjct: 279 QTKARAPGVPKEVAIEAAIKGLRIGPFAAHLAREKPASMHELYHEFEKYCRSDNDYRKRL 338
Query: 306 KRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRP-- 363
+ +K ++ + ++K D+ +++ G+ ++ +P ++ R E R
Sbjct: 339 EDQNSQKRQSNDRNSQKKDLSRDERRPQREAGGQMMNIEQPKNDRPENNRPPVEARSSER 398
Query: 364 -------------WQ-SKSHRQREETDMVMNTDLSDMLQGARDANLVDE---------PE 400
W+ ++S R R++ + + DA E P
Sbjct: 399 VPNQAGRGGRNAGWRKNQSQRPRKQYCFFHGEEKGHSTRDCPDAKETQERIKSRSAPQPP 458
Query: 401 APKYQPRDANPKKWCEFHRS--AGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNG---G 455
P QPR+ N F+ S G LQ + + Y + WR
Sbjct: 459 IPVAQPREVNHTFPQTFYHSYVGGSSQQHPAPLQ---PSALASAYYPSFLPAWRPAQQTA 515
Query: 456 DQN---------KAHKREEERADTKGKKKQESAAIATKGA------DDTFAQHSG-PPVG 499
D N H E Q A D+ H+ P +G
Sbjct: 516 DHNLPPNYVPPRPPHITYIETQSLPPPPNQLQLLQAPPPPKTEPHPDNQIGPHTPLPTIG 575
Query: 500 TINTIAGGFGGGGDTHAARKRHVRAVNSVHEVA----FGFVHPDITISMADFEGIKPHKD 555
I IAGG T +K H+R VN+V + IT + D
Sbjct: 576 MILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDWSRTPITFTEEDLRLESYPHT 635
Query: 556 DPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMV 615
D +V+ + + V R+L+D GSSADII+ FD++ L+ + L P L+GF G+Q+
Sbjct: 636 DALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGKQIHA 695
Query: 616 RGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLS 675
G + L FG E AR V + V+ + YN I GR LN+ A +L +K P
Sbjct: 696 LGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKIPAL 755
Query: 676 SGKV---GKLKVDQKMARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRP 732
G + G K + + + Y + N+ S + EAS PRG+ +
Sbjct: 756 HGVITVHGSQKEARNIEKAIYKSFRNINSVDST-------QHEASQPPDMPRGKTNL--- 805
Query: 733 TPIEETKALKFG----DRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFI 788
EETK + D+ + I L+ E+E L +L +N D+FAWS D+ G+ + I
Sbjct: 806 ADQEETKCIPLQEAVPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQGVSRDII 865
Query: 789 CHRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKAN 848
H L ++P ++P +R++ ++ A + EV +LL A+ IREV YP WLANVV+V K N
Sbjct: 866 EHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKKN 925
Query: 849 GKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDK 908
GK RMC+D+TDLNKAC KDS+PLP ID+ VD A+G + SL+D +SG HQI + DE K
Sbjct: 926 GKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKKEDEGK 985
Query: 909 TAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHH 968
+F T YCY MP GLKNAGAT+ R+M +V Q+ RN+ YVDD++V S R DH
Sbjct: 986 ASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHI 1045
Query: 969 QDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNV 1028
+DL+E F +R ++LNPEKC FGV GK LG++I+S GI NP+K KAI M PSN
Sbjct: 1046 KDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNK 1105
Query: 1029 KEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPIL 1088
KEVQRLTGRIAAL+RF+ +S +RS PFFK LR+ EW E EAF +LK +++ ++
Sbjct: 1106 KEVQRLTGRIAALNRFISRSAERSLPFFKVLREGKT-EWGPEQSEAFRQLKNYIATNLLV 1164
Query: 1089 SKPIQGHPLHLYFAVSDGALSSVMLQEIDGE----HRIVYFVSHTLQGAEVRYQKIEKAA 1144
+ P PL LY A S+ A+S V++ E R VY+VS L GA++ Y +IEK A
Sbjct: 1165 TVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYTEIEKIA 1224
Query: 1145 LAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAV 1204
AVL +R+L+ YFQS +KV T PL +L+ + SGR+ W+ ELS++ + Y R ++
Sbjct: 1225 YAVLCASRKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDITYVPRTSI 1284
Query: 1205 GAQSLADFVVELTPDRFER---VDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKF 1261
+Q+LADF+ + TP +D WTL+ DG+ +G+GA L P L L+ +++
Sbjct: 1285 KSQALADFMADWTPSNKNEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLKLKFAIRL 1344
Query: 1262 EFKATNNQAEYEALIAGLKLAREVKIRSLL 1291
EFKATNN AEYE LI GL A+ ++L+
Sbjct: 1345 EFKATNNIAEYEGLILGLNKAKASGAKTLV 1374
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 595 bits (1533), Expect = e-168
Identities = 401/1216 (32%), Positives = 592/1216 (47%), Gaps = 161/1216 (13%)
Query: 115 SREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAV 174
+R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 413 NRHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKA 472
Query: 175 KCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEG 234
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ G
Sbjct: 473 MANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSG 532
Query: 235 ESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTY 294
ESL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 533 ESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY 592
Query: 295 ILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPR 354
AK E T+ +K+ + G G G + K K
Sbjct: 593 -------------AKAEDAVTA---SKQSGPSWKQNKGTPATGGGGSNNHKDRK------ 630
Query: 355 RDDYEQRRPWQ-----SKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQP 406
R+P + S S RQR D +MN+
Sbjct: 631 ------RKPAELVATASHSSRQRSRVNTFDKIMNSQ------------------------ 660
Query: 407 RDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEE 466
C H ++ H DC+ ++ D+ + R D+ ++ R+++
Sbjct: 661 --------CPHHPNSNHVAKDCFVYKQFADQYTKTA---------RKNSDEEQSTSRKKD 703
Query: 467 RADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RA 524
DT F H +N I FGG + RK+ + R
Sbjct: 704 DGDTLAG----------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTERE 740
Query: 525 VNSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRR 571
+N+V E+A F HPD + + P+V+ + + +RR
Sbjct: 741 INAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRR 791
Query: 572 VLLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGE 627
L+D GS+ +I++ D + + ++L P+ G + G + + G I L FG
Sbjct: 792 TLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGT 848
Query: 628 DECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQK 687
E R + + V +Y+ I+GR L + AV ++ +K P G V L+ D K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIK 907
Query: 688 MARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD-- 745
A C ++ + + A+ + EG V TK K G+
Sbjct: 908 QAVTCDKESCDMAQTREMASAREDIRLAAATAS-----EGEV------PATKISKSGESE 956
Query: 746 -RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*L 804
+T KI ++ +T N D+FAW DMPGI I H L + KP+
Sbjct: 957 AKTKKIPLDPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 1010
Query: 805 RRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKAC 864
RR D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+C
Sbjct: 1011 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1070
Query: 865 PKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMP 924
PKD + LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMP
Sbjct: 1071 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1130
Query: 925 FGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMR 984
FGLKNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+
Sbjct: 1131 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMK 1190
Query: 985 LNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRF 1044
LNPEKC FGV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF
Sbjct: 1191 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1250
Query: 1045 LPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVS 1104
+ + G+R PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY + +
Sbjct: 1251 VSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSAT 1310
Query: 1105 DGALSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYF 1158
+S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L YF
Sbjct: 1311 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1370
Query: 1159 QSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT- 1217
Q V V T PL +L + +GR+ W++EL L + R ++ +Q+LADFV E T
Sbjct: 1371 QGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDLSFKPRISIKSQALADFVAEWTE 1430
Query: 1218 --PDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEAL 1275
D + WT+ DGS SG+GAGV L P L L F A++N AEYEAL
Sbjct: 1431 CQEDTTVKKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1276 IAGLKLAREVKIRSLL 1291
+ GL++A + I+ L+
Sbjct: 1491 LHGLRIAISLGIKRLI 1506
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 594 bits (1532), Expect = e-168
Identities = 400/1216 (32%), Positives = 592/1216 (47%), Gaps = 161/1216 (13%)
Query: 115 SREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAV 174
+R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 409 NRHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKA 468
Query: 175 KCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEG 234
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ G
Sbjct: 469 MANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSG 528
Query: 235 ESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTY 294
ESL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 529 ESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY 588
Query: 295 ILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPR 354
AK E T+ +K+ + G G G + K K
Sbjct: 589 -------------AKAEDAVTA---SKQSGPSWKQNKGTPATGGGGSNNHKDRK------ 626
Query: 355 RDDYEQRRPWQ-----SKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQP 406
R+P + S S RQR D +MN+
Sbjct: 627 ------RKPAELVATASHSSRQRSRVNTFDKIMNSQ------------------------ 656
Query: 407 RDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEE 466
C H ++ H DC+ ++ D+ + R D+ ++ R+++
Sbjct: 657 --------CPHHPNSNHVAKDCFVYKQFADQYTKTA---------RKNSDEEQSTSRKKD 699
Query: 467 RADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RA 524
DT F H +N I FGG + RK+ + R
Sbjct: 700 DGDTPAG----------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTERE 736
Query: 525 VNSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRR 571
+N+V E+A F HPD + + P+V+ + + +RR
Sbjct: 737 INAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRR 787
Query: 572 VLLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGE 627
L+D GS+ +I++ D + + ++L P+ G + G + + G I L FG
Sbjct: 788 TLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGT 844
Query: 628 DECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQK 687
E R + + V +Y+ I+GR L + AV ++ +K P G V L+ D K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIK 903
Query: 688 MARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD-- 745
A C ++ + + A+ + EG V TK K G+
Sbjct: 904 QAVTCDKESCDMAQTREMASAREDIRLAAATAS-----EGEV------PATKISKSGESE 952
Query: 746 -RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*L 804
+T KI ++ +T N D+FAW DMPGI I H L + KP+
Sbjct: 953 AKTKKIPLDPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 1006
Query: 805 RRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKAC 864
RR D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+C
Sbjct: 1007 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1066
Query: 865 PKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMP 924
PKD + LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMP
Sbjct: 1067 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1126
Query: 925 FGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMR 984
FGLKNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+
Sbjct: 1127 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1186
Query: 985 LNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRF 1044
LNPEKC FGV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF
Sbjct: 1187 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1246
Query: 1045 LPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVS 1104
+ + G+R PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY + +
Sbjct: 1247 VSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSAT 1306
Query: 1105 DGALSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYF 1158
+S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L YF
Sbjct: 1307 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1366
Query: 1159 QSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT- 1217
Q V V T PL +L +++GR+ W++EL + + R ++ +Q+LADFV E T
Sbjct: 1367 QGHSVTVVTSFPLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTE 1426
Query: 1218 --PDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEAL 1275
D WT+ DGS SG+GAGV L P L L F A++N AEYEAL
Sbjct: 1427 CQEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1486
Query: 1276 IAGLKLAREVKIRSLL 1291
+ GL++A + I+ L+
Sbjct: 1487 LHGLRIAISLGIKRLI 1502
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 593 bits (1529), Expect = e-167
Identities = 398/1215 (32%), Positives = 588/1215 (47%), Gaps = 161/1215 (13%)
Query: 116 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 175
R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 347 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAM 406
Query: 176 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 235
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 407 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 466
Query: 236 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYI 295
SL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 467 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYT 526
Query: 296 LDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRR 355
K + + +K+ + G G G + K K
Sbjct: 527 ----------------KAEDAVTASKQSGPSWKQNKGTPATGGGGSNNHKDRK------- 563
Query: 356 DDYEQRRPWQ-----SKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQPR 407
R+P + S S RQR D +MN+
Sbjct: 564 -----RKPAELVATASHSSRQRSRVNTFDKIMNSQ------------------------- 593
Query: 408 DANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEER 467
C H ++ H DC+ ++ D+ + R D+ ++ R+++
Sbjct: 594 -------CPHHPNSNHVAKDCFVYKQFADQYTKTA---------RKNSDEEQSTSRKKDD 637
Query: 468 ADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAV 525
DT F H +N I FGG + RK+ + R +
Sbjct: 638 GDTPAG----------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREI 674
Query: 526 NSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRV 572
N+V E+A F HPD + + P+V+ + + +RR
Sbjct: 675 NAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRT 725
Query: 573 LLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGED 628
L+D GS+ +I++ D + + ++L P+ G + G + + G I L FG
Sbjct: 726 LIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTR 782
Query: 629 ECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKM 688
E R + + V +Y+ I+GR L + AV ++ +K P G V L+ D K
Sbjct: 783 ENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIKQ 841
Query: 689 ARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD--- 745
A C ++ + + A+ + EG I TK K G+
Sbjct: 842 AVTCDKESCDMAQTREMASAREDIRLAAATAS-----EGE------IPATKTSKSGESEA 890
Query: 746 RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LR 805
+T KI ++ +T N D+FAW DMPGI I H L + KP+
Sbjct: 891 KTKKIPLDPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 944
Query: 806 RRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACP 865
RR D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+CP
Sbjct: 945 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1004
Query: 866 KDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPF 925
KD + LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPF
Sbjct: 1005 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1064
Query: 926 GLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRL 985
GLKNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+L
Sbjct: 1065 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1124
Query: 986 NPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFL 1045
NPEKC FGV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+
Sbjct: 1125 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1184
Query: 1046 PKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSD 1105
+ G+R PFFK L+K F+W E ++AF K+LL+ PPIL+ P PL LY + +
Sbjct: 1185 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATS 1244
Query: 1106 GALSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQ 1159
+S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L YFQ
Sbjct: 1245 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1304
Query: 1160 SFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT-- 1217
V V T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T
Sbjct: 1305 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1364
Query: 1218 -PDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALI 1276
D WT+ DGS SG+GAGV L P L L F A++N AEYEAL+
Sbjct: 1365 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1424
Query: 1277 AGLKLAREVKIRSLL 1291
GL++A + I+ L+
Sbjct: 1425 HGLRIAISLGIKRLI 1439
>ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultivar-group)]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza
sativa (japonica cultivar-group)]
gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1802
Score = 593 bits (1528), Expect = e-167
Identities = 396/1205 (32%), Positives = 583/1205 (47%), Gaps = 141/1205 (11%)
Query: 116 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 175
R D + F++D+ V P K ++ Y G ++P+ L + +
Sbjct: 414 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAM 473
Query: 176 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 235
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 474 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 533
Query: 236 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYI 295
SL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 534 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY- 592
Query: 296 LDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRR 355
AK E T+ +K+ G G G + K K R+
Sbjct: 593 ------------AKAEDAVTA---SKQSGPSWKPNKGTPATGGGGSNNHKDRK-----RK 632
Query: 356 DDYEQRRPWQSKSHRQREET-DMVMNTDLSDMLQGARDANLVDEPEAPKYQPRDANPKKW 414
+ S R R T D +MN+
Sbjct: 633 PEELVATATHSSRQRSRVNTFDKIMNSQ-------------------------------- 660
Query: 415 CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEERADTKGKK 474
C H ++ H DC+ ++ ++ + R D+ ++ R+++ DT
Sbjct: 661 CPHHPNSNHVAKDCFVYKQFAEQYTKTT---------RKNSDEEQSTSRKKDDGDTPAG- 710
Query: 475 KQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAVNSVH--- 529
F H +N I FGG + RK+ + R +N+V
Sbjct: 711 ---------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREINAVQPDT 748
Query: 530 -------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 579
E+A F HPD + + P+V+ + + +RR L+D GS+
Sbjct: 749 PQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRTLIDGGSA 799
Query: 580 ADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 635
+I++ D + + ++L P+ G + G + + G I L FG E R
Sbjct: 800 LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQIILPVTFGTRENFRTEN 856
Query: 636 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNN 695
+ + V +Y+ I+GR L + AV ++ +K P G V L+ D K A C
Sbjct: 857 ISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIKQAVTCDKE 915
Query: 696 CLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLT 755
++ + + A+ + EG V TK K G+ K
Sbjct: 916 SCDMAQTREMASAREDIRLAAATAS-----EGEV------PATKISKSGESEAKTKKIPL 964
Query: 756 EEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKA 815
+ ++ T N D+FAW DMPGI I H L + KP+ RR D+ A
Sbjct: 965 DPSDSTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKQDAKPIKQRLRRFAQDRKDA 1021
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSID 875
+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+CPKD + LP ID
Sbjct: 1022 IKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRID 1081
Query: 876 SLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQ 935
+VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPFGLKNAGATYQ
Sbjct: 1082 QVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQ 1141
Query: 936 RLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQ 995
R++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+LNPEKC FGV
Sbjct: 1142 RMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVP 1201
Query: 996 GGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPF 1055
GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+ + G+R PF
Sbjct: 1202 SGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPF 1261
Query: 1056 FKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVMLQE 1115
FK L+K F+W E ++AF K+LL+ PP+L+ P PL LY A + +S+V++ E
Sbjct: 1262 FKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPYPQEPLLLYVAATSQVVSTVLVVE 1321
Query: 1116 IDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDL 1169
+ E R +YFVS L ++ RY +++K +L+T R+L YFQ V V T
Sbjct: 1322 REEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF 1381
Query: 1170 PLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT---PDRFERVDT 1226
PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T D
Sbjct: 1382 PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKME 1441
Query: 1227 QWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVK 1286
WT+ DGS SG+GAGV L P L L F A++N AEYEAL+ GL++A +
Sbjct: 1442 HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLG 1501
Query: 1287 IRSLL 1291
I+ L+
Sbjct: 1502 IKRLI 1506
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 593 bits (1528), Expect = e-167
Identities = 400/1215 (32%), Positives = 590/1215 (47%), Gaps = 161/1215 (13%)
Query: 116 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 175
R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 409 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAM 468
Query: 176 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 235
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 469 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 528
Query: 236 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYI 295
SL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 529 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY- 587
Query: 296 LDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRR 355
AK E T+ +K+ + G G G + K K
Sbjct: 588 ------------AKAEDAVTA---SKQSGPSWKQNKGTPATGGGGSNNHKDRK------- 625
Query: 356 DDYEQRRPWQ-----SKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQPR 407
R+P + S S RQR D +MN+
Sbjct: 626 -----RKPAELVATASHSSRQRSRVNTFDKIMNSQ------------------------- 655
Query: 408 DANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEER 467
C H ++ H DC+ ++ D+ + R D+ ++ R+++
Sbjct: 656 -------CPHHPNSNHVAKDCFVYKQFADQYTKTA---------RKNTDEEQSTSRKKDD 699
Query: 468 ADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAV 525
DT F H +N I FGG + RK+ + R +
Sbjct: 700 GDTPAG----------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREI 736
Query: 526 NSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRV 572
N+V E+A F HPD + + P+V+ + + +RR
Sbjct: 737 NAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRT 787
Query: 573 LLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGED 628
L+D GS+ +I++ D + + ++L P+ G + G + + G I L FG
Sbjct: 788 LIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTR 844
Query: 629 ECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKM 688
E R + + V +Y+ I+GR L + AV ++ +K P G V L+ D K
Sbjct: 845 ENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDVKQ 903
Query: 689 ARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD--- 745
A C ++ + + A+ + EG I TK K G+
Sbjct: 904 AVTCDKESCDMAQTREMASAREDIRLAAATAS-----EGE------IPATKTSKSGESEA 952
Query: 746 RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LR 805
+T KI ++ +T N D+FAW DMPGI I H L + KP+
Sbjct: 953 KTKKIPLDPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1006
Query: 806 RRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACP 865
RR D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+W MCVDYTDLNK+CP
Sbjct: 1007 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCP 1066
Query: 866 KDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPF 925
KD + LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPF
Sbjct: 1067 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1126
Query: 926 GLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRL 985
GLKNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+L
Sbjct: 1127 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1186
Query: 986 NPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFL 1045
NPEKC FGV GK LGFM++ RGI+ NPEK AI MKSPS K+VQ+LTG +AALSRF+
Sbjct: 1187 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFV 1246
Query: 1046 PKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSD 1105
+ G+R PFFK L+K +F W E ++AF K+LL+ PP+L+ P PL LY + +
Sbjct: 1247 SRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1306
Query: 1106 GALSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQ 1159
+S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L YFQ
Sbjct: 1307 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1366
Query: 1160 SFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT-- 1217
V V T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T
Sbjct: 1367 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1426
Query: 1218 -PDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALI 1276
D WT+ DGS SG+GAGV L P L L F A++N AEYEAL+
Sbjct: 1427 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1486
Query: 1277 AGLKLAREVKIRSLL 1291
GL++A + I+ L+
Sbjct: 1487 HGLRIAISLGIKRLI 1501
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 592 bits (1527), Expect = e-167
Identities = 380/1083 (35%), Positives = 560/1083 (51%), Gaps = 111/1083 (10%)
Query: 219 QPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTR 278
+P T L IRQ+ GES++EYM R+S A +V+D + A GLL G + K+
Sbjct: 234 EPKTQQHLLGIRQRLGESIREYMRRFSQARCQVQDITEASVINAASAGLLEGEVTRKIAN 293
Query: 279 KPARSMEEMRARASTYILDEEDDAFKRK-RAKLEKGDTSPKRAKKDSSGEDKGDGKQQRP 337
K +++E + + EED ++ +A+ +K + +A+ + + ++P
Sbjct: 294 KEPQTLEHLLRIIDGFARGEEDSKRRQAIQAEYDKASVAAAQAQAQAQVAEPPPLAVRQP 353
Query: 338 GKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDLSDMLQGARDANLVD 397
+P + PR+ + P + R + VM + L+ DA
Sbjct: 354 -------QPAIQGQPPRQG----QAPMTWRKFRTDRASKAVMAVEEVQALRKEFDAQQAS 402
Query: 398 EPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQ 457
+ P + +C FH + H + C +++ +GN Q
Sbjct: 403 NHQQPVR--KKVRKDLYCAFHGRSLHTMEQCRNIRQ----------RGNVQD-------- 442
Query: 458 NKAHKREEERADTKGKKK--QESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTH 515
R ++ A + ++ QE +A + D AQ I I +
Sbjct: 443 ----PRPQQGATVEAPREAFQEQTPLAEQRQD---AQRR-----VIQVITRADPPSQLSK 490
Query: 516 AARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRV 572
+K +R V+S+ G +++ I D EG+ DP+V+ + F VRR+
Sbjct: 491 RQKKMQIRMVHSITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRI 550
Query: 573 LLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECAR 632
L+D GSSAD+I+ +A+ K+GLT LTP +L GF GE V V G L FG E R
Sbjct: 551 LVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGENRR 610
Query: 633 VLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMAREC 692
+V + V+ + +YN I GR TLN + +L +K P G G + V
Sbjct: 611 EEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMP---GPTGVIVVKGLQPSAA 667
Query: 693 YNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD----RTL 748
L A++ + +E L R + +PTP + ++ D + +
Sbjct: 668 SKGDL-------AIINRAVHNVEVK---LHDRPK-HAPKPTPHGKIIKVQIDDAVPTKLV 716
Query: 749 KIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRL 808
+G + +E+ + K+ +N+D+FAWS ++ G+ I H LA+ P KP R++
Sbjct: 717 SLGGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKM 776
Query: 809 GGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDS 868
D+ +A + EV KLL A I+E+ +P WLAN V+V+K+NGKWRMCVD+TDLNKACPKD
Sbjct: 777 SADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNKACPKDD 836
Query: 869 YPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLK 928
+PLP ID LVD +G EL+S ++AYSG HQI M+P D KT+F+T +C+ MPFGL+
Sbjct: 837 FPLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLRMPFGLR 896
Query: 929 NAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPE 988
NAGAT+ RL+ +V Q+GRN+E YVDD++VK + DH DL+E F +R ++LNPE
Sbjct: 897 NAGATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAGIKLNPE 956
Query: 989 KCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKS 1048
KC FGV+ GK LGF+++ RGIE NPEK AIQQMK PS+V EVQ+L GRI ALSRFL ++
Sbjct: 957 KCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSRA 1016
Query: 1049 GDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGAL 1108
+R PFFK LR F WT EC+ AF LK+ L SPP L P G L LY A S A+
Sbjct: 1017 AERGLPFFKTLRGAGKFNWTPECQVAFDELKQYLQSPPALLSPPPGSELLLYLAASPVAV 1076
Query: 1109 SSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD 1168
S+ ++QE + VYFVS LQGA+ RY ++EK A A+++ +R+L+ YFQ+ V V +
Sbjct: 1077 SAALVQETKFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPSQ 1136
Query: 1169 LPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTPDRFERVDTQW 1228
PL ++L ++SGRL W+ ELS + L + R A+ +Q LADFV E TP
Sbjct: 1137 YPLGEILLGKEVSGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAEWTP---------- 1186
Query: 1229 TLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIR 1288
F TNN AEYEA++ GL+ A+ + R
Sbjct: 1187 ----------------------------------FDTTNNAAEYEAILLGLRKAKALGFR 1212
Query: 1289 SLL 1291
LL
Sbjct: 1213 RLL 1215
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 592 bits (1525), Expect = e-167
Identities = 395/1213 (32%), Positives = 590/1213 (48%), Gaps = 155/1213 (12%)
Query: 115 SREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAV 174
+R D + F++D+ V P K ++ Y G ++P+ L + + +
Sbjct: 406 NRHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKA 465
Query: 175 KCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEG 234
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ G
Sbjct: 466 MANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSG 525
Query: 235 ESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTY 294
ESL++Y+ R+S K+ D AF G+ L K RKP +++ M +A+ Y
Sbjct: 526 ESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPMTVKLMFEKANEY 585
Query: 295 ILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPR 354
AK E T+ +K+ + G G G + K K
Sbjct: 586 -------------AKAEDAVTA---SKQSGPSWKQNKGTPATGGGGSNNHKDRK------ 623
Query: 355 RDDYEQRRPWQ-----SKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQP 406
R+P + S S RQR D +MN+
Sbjct: 624 ------RKPAELVATASHSSRQRSRVNTFDKIMNSQ------------------------ 653
Query: 407 RDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEE 466
C H ++ H DC+ ++ D+ + R D+ ++ R+++
Sbjct: 654 --------CSHHPNSNHVAKDCFVYKQFADQYTKTA---------RKNSDEEQSTSRKKD 696
Query: 467 RADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RA 524
DT F H +N I FGG + RK+ + R
Sbjct: 697 DGDTPAG----------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTERE 733
Query: 525 VNSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRR 571
+N+V E+A F HPD + + P+V+ + + +RR
Sbjct: 734 INAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRR 784
Query: 572 VLLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGE 627
L+D GS+ +I++ D + + ++L P+ G + G + + G I L FG
Sbjct: 785 TLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGT 841
Query: 628 DECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQK 687
E R + + V +Y+ I+GR L + AV ++ +K P G V L+ D K
Sbjct: 842 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIK 900
Query: 688 MARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRT 747
A C ++ + + A+ + GE + + E++A +T
Sbjct: 901 QAVTCDKESCDMAQTREMASAREDIRLAAATAS---EGEEPATKISKSGESEA-----KT 952
Query: 748 LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRR 807
KI ++ +T N D+FAW DMPGI I H L + KP+ RR
Sbjct: 953 KKIPLDPSDPAKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRR 1006
Query: 808 LGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKD 867
D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+CPKD
Sbjct: 1007 FAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD 1066
Query: 868 SYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGL 927
+ LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPFGL
Sbjct: 1067 PFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGL 1126
Query: 928 KNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNP 987
KNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+LNP
Sbjct: 1127 KNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNP 1186
Query: 988 EKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPK 1047
EKC FGV GK +GFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+ +
Sbjct: 1187 EKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSR 1246
Query: 1048 SGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGA 1107
G+R PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY + +
Sbjct: 1247 LGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQV 1306
Query: 1108 LSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSF 1161
+S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L YFQ
Sbjct: 1307 VSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGH 1366
Query: 1162 PVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT---P 1218
V V T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T
Sbjct: 1367 SVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQE 1426
Query: 1219 DRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAG 1278
D WT+ DGS SG+GAGV L P L L F A++N AEYEAL+ G
Sbjct: 1427 DTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1486
Query: 1279 LKLAREVKIRSLL 1291
L++A + I+ L+
Sbjct: 1487 LRIAISLGIKRLI 1499
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 591 bits (1523), Expect = e-167
Identities = 399/1219 (32%), Positives = 586/1219 (47%), Gaps = 169/1219 (13%)
Query: 116 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 175
R D + F++D+ V P K ++ Y G ++P+ L + +
Sbjct: 414 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAM 473
Query: 176 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 235
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 474 ANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGE 533
Query: 236 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYI 295
SL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 534 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY- 592
Query: 296 LDEEDDAFKRKRAKLEKGDTSPKRA------KKDSSGEDKGDGKQQRPGKGKSVFKPTKE 349
AK E T+ K++ KKD+ G + K K
Sbjct: 593 ------------AKAEDAVTASKQSGPSWKPKKDTPATGGGGSNNHKDRKRKP------- 633
Query: 350 QLYPRRDDYEQRRPWQSKSHRQREET---DMVMNTDLSDMLQGARDANLVDEPEAPKYQP 406
E+ S RQR D +MN+
Sbjct: 634 ---------EELVATAIHSSRQRSRVNTFDKIMNSQ------------------------ 660
Query: 407 RDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEE 466
C H ++ H DC+ ++ ++ + R D+ ++ R+++
Sbjct: 661 --------CPHHPNSNHVAKDCFVYKQFAEQYTKTT---------RKNSDEEQSTSRKKD 703
Query: 467 RADTKGKKKQESAAIATKGADDTFAQHSGPPVG------TINTIAGGFGGGGDTHAARKR 520
DT PVG +N I FGG + RK+
Sbjct: 704 DGDT--------------------------PVGFQDHRKELNHI---FGGPLAYESKRKQ 734
Query: 521 HV--RAVNSVH----------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMN 565
+ R +N+V E+A F HPD + + P+V+ +
Sbjct: 735 KLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVR 785
Query: 566 SFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDL 621
+ +RR L+D GS+ +I++ D + + ++L P+ G + G + + G I L
Sbjct: 786 NVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITL 842
Query: 622 DTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGK 681
FG E R + + V +Y+ I+GR L + AV ++ +K P G V
Sbjct: 843 PVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLS 901
Query: 682 LKVDQKMARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKAL 741
L+ D K A C ++ + + A+ + EG V TK
Sbjct: 902 LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATAS-----EGEV------PATKTS 950
Query: 742 KFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPV 801
K G+ K T+ + TK N D+FAW DMPGI I H L + KP+
Sbjct: 951 KSGESEAK--TKKIPLDPSNPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPI 1007
Query: 802 S*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLN 861
RR D+ A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLN
Sbjct: 1008 KQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLN 1067
Query: 862 KACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYR 921
K+CPKD + LP ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY
Sbjct: 1068 KSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYV 1127
Query: 922 TMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKH 981
TMPFGLKNAGATYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR
Sbjct: 1128 TMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAF 1187
Query: 982 NMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAAL 1041
M+LNPEKC FGV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AAL
Sbjct: 1188 RMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAAL 1247
Query: 1042 SRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYF 1101
SRF+ + G+R PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY
Sbjct: 1248 SRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYV 1307
Query: 1102 AVSDGALSSVMLQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLR 1155
+ + +S+V++ E + E R +YFVS L ++ RY +++K +L+T R+L
Sbjct: 1308 SATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLS 1367
Query: 1156 PYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVE 1215
YFQ V V T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E
Sbjct: 1368 HYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAE 1427
Query: 1216 LT---PDRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEY 1272
T D WT+ DGS SG+GAGV L P L L F A++N AEY
Sbjct: 1428 WTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEY 1487
Query: 1273 EALIAGLKLAREVKIRSLL 1291
EAL+ GL++A + I+ L+
Sbjct: 1488 EALLHGLRIAISLGIKRLI 1506
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 590 bits (1521), Expect = e-166
Identities = 397/1206 (32%), Positives = 586/1206 (47%), Gaps = 143/1206 (11%)
Query: 116 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 175
R D + F++D+ V P K ++ Y G ++P+ L + +
Sbjct: 414 RHDDDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAM 473
Query: 176 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 235
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q+ GE
Sbjct: 474 ANYLPVALADSARSWLHGLPRGTIESWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGE 533
Query: 236 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYI 295
SL++Y+ R+S K+ D AF G+ L K RKP R+++ M +A+ Y
Sbjct: 534 SLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEY- 592
Query: 296 LDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRR 355
AK E T+ +K+ G G G + K K R+
Sbjct: 593 ------------AKAEDAVTA---SKQSGPSWKPNKGTPATGGGGSNNHKDRK-----RK 632
Query: 356 DDYEQRRPWQSKSHRQREET-DMVMNTDLSDMLQGARDANLVDEPEAPKYQPRDANPKKW 414
+ S R R T D +MN+
Sbjct: 633 PEELVATATHSSRQRSRVNTFDKIMNSQ-------------------------------- 660
Query: 415 CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEERADTKGKK 474
C H ++ H DC+ ++ ++ + R D+ ++ R+++ DT
Sbjct: 661 CPHHPNSNHVAKDCFVYKQFAEQYTKTT---------RKNSDEEQSTSRKKDDGDTPAG- 710
Query: 475 KQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAVNSVH--- 529
F H +N I FGG + RK+ + R +N+V
Sbjct: 711 ---------------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREINAVQPDT 748
Query: 530 -------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 579
E+A F HPD + + P+V+ + + +RR L+D GS+
Sbjct: 749 PQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRTLIDGGSA 799
Query: 580 ADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 635
+I++ D + + ++L P+ G + G + + G I L FG E R
Sbjct: 800 LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTRENFRTEN 856
Query: 636 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNN 695
+ + V +Y+ I+GR L + AV ++ +K P G V L+ D K A C
Sbjct: 857 ISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKLPGPRG-VLSLRSDIKQAVTCDKE 915
Query: 696 CLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLT 755
++ + + A+ + EG V TK K G+ K
Sbjct: 916 SCDMAQTREMASAREDIRLAAATAS-----EGEV------PATKISKSGESEAKTKKIPL 964
Query: 756 EEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKA 815
+ ++ T N D+FAW DMPGI I H L + KP+ RR D+ A
Sbjct: 965 DPSDSTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDA 1021
Query: 816 VQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSID 875
+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK CPKD + LP ID
Sbjct: 1022 IKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRID 1081
Query: 876 SLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQ 935
+VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPFGLKNAGATYQ
Sbjct: 1082 QVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQ 1141
Query: 936 RLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQ 995
R++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+LNPEKC FGV
Sbjct: 1142 RMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVP 1201
Query: 996 GGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPF 1055
GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+ + G+R PF
Sbjct: 1202 SGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPF 1261
Query: 1056 FKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVML-- 1113
FK L+K F W E ++AF K+LL+ PP+L+ P PL LY + + +S+V++
Sbjct: 1262 FKLLKKTDDFHWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVE 1321
Query: 1114 QEIDGE----HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDL 1169
+E DG R +YFVS L ++ RY +++K +L+T R+L YFQ V V T
Sbjct: 1322 REEDGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF 1381
Query: 1170 PLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTPDR----FERVD 1225
PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T + E+V+
Sbjct: 1382 PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKVE 1441
Query: 1226 TQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREV 1285
WT+ DGS SG+GAGV L P L L F A++N AEYEAL+ GL++A +
Sbjct: 1442 -HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISL 1500
Query: 1286 KIRSLL 1291
I+ L+
Sbjct: 1501 GIKRLI 1506
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1587
Score = 570 bits (1470), Expect = e-161
Identities = 319/775 (41%), Positives = 450/775 (57%), Gaps = 51/775 (6%)
Query: 520 RHVRAVNSVHEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 579
R V ++ S+ E A +++ I+ D EG+ DP+V+ + F VRR+L+D GSS
Sbjct: 563 RMVHSITSMGEGAPQYLNQLISFGPEDAEGVMFSHQDPLVISAEIAGFEVRRILVDGGSS 622
Query: 580 ADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYL 639
AD+I+ +A+ K+ L LTP +L GF GE V V G L FG E R ++ +
Sbjct: 623 ADVIFAEAYAKMELPTQTLTPAPASLRGFGGEAVQVLGQALLLIAFGSGENGREEQILFD 682
Query: 640 VLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNNCLNL 699
V+ + +YN I GR TLN+ AV +L +K P +G + + A +
Sbjct: 683 VVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVIVVKGLQSSAASK-------- 734
Query: 700 YGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLTEEQE 759
A++ + +E E N P P K K ++ +
Sbjct: 735 --SDLAIINRAVHSVETELH------ERPKNTPKPTPHGKITK---------VQIDDADP 777
Query: 760 TRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKAVQQE 819
T+L +L +N+D+FAWS ++ G+ + I H LA+ P +KP R++ D+ +A + E
Sbjct: 778 TKL--VLKKNIDIFAWSPDEVGGVPADLIMHDLAVKPDIKPRKQKLRKMSADRQEAAKAE 835
Query: 820 VDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVD 879
V KLL A I+E+ +P WLAN V+V+K+NGKWRMCVD+TDLNKACPKD + LP ID LVD
Sbjct: 836 VQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFSLPRIDQLVD 895
Query: 880 GASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQRLMD 939
+G EL+S DAYSG HQI M+P D KT+F+T +C+ MPFGL+NAGAT+ RL+
Sbjct: 896 STAGCELMSFQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFARLVY 955
Query: 940 RVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKF 999
+V Q+GRN+E YVDD++VKS + DH DL+E F +R ++LNPEKC FGV GK
Sbjct: 956 KVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGIKLNPEKCVFGVCIGKL 1015
Query: 1000 LGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCL 1059
LGF+++ RGIE+NPEK AIQQMK PS+V EVQ+L GRIAALSRFL K+ +R+ PFFK L
Sbjct: 1016 LGFLVSERGIEVNPEKINAIQQMKPPSSVHEVQKLAGRIAALSRFLSKAAERALPFFKTL 1075
Query: 1060 RKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVMLQEIDGE 1119
R F WT EC+ AF LK+ L SPP L P G L LY A S A+S ++QE +
Sbjct: 1076 RGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLYLAASPVAVSVALVQETEFG 1135
Query: 1120 HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQKPD 1179
+ VYFVS LQGA+ RY ++EK A A+ PL ++L+ +
Sbjct: 1136 QKPVYFVSEALQGAKTRYTEMEKLAYAL---------------------YPLGEILRGKE 1174
Query: 1180 LSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTP---DRFERVDTQWTLFVDGSS 1236
++GRL W+ ELS + L + R A+ +Q LADFV E TP + + W ++ DGS
Sbjct: 1175 VTGRLSKWAAELSLFDLHFVARSAIKSQVLADFVAEWTPVLAPDTKPAEQFWVMYSDGSW 1234
Query: 1237 NSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSLL 1291
+ G+G L P + + + + +F TNN AEYEA++ GL+ A+ + +R LL
Sbjct: 1235 SHRGAGVAAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLL 1289
Score = 58.9 bits (141), Expect = 1e-06
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 198 SISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPR 257
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 354 SIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEA 413
Query: 258 ACALAFKNGLLPGGLNSKLTRKPARSMEEMRARASTYILDEEDDAFKRKRA 308
+ A GLL G L K+ K +++E + + EED KR++A
Sbjct: 414 SVINAALAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDS--KRRQA 462
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 565 bits (1456), Expect = e-159
Identities = 308/795 (38%), Positives = 469/795 (58%), Gaps = 23/795 (2%)
Query: 509 GGGGDTHAARKRHVRAVNSVHEVAFG-------FVHPDITISMADFEGIKPHKDDPIVVQ 561
GG A +K+ A V V + H IT S D + +D +V+
Sbjct: 22 GGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVIS 81
Query: 562 LRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDL 621
+ F V VL+D GS+ADII+ AF ++ ++ + L GF G Q++ G I +
Sbjct: 82 CVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGFGGRQIVALGKITM 141
Query: 622 DTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGK 681
FG R +V + ++ + YN IIGR TLN A++ A+L +K P G +
Sbjct: 142 SVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQGPIA- 200
Query: 682 LKVDQKMARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKAL 741
+ Q+ AR N + + C + + E ++P P+ + +
Sbjct: 201 IHGSQEAARRAEGNWTDSKAIHNIDGAEACEQYKFRREKA-----ASADQPKPMLLCEDI 255
Query: 742 KFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPV 801
++ + +G++L+EEQE L + L N D+FAWS D+ G++ + I H L ++PS +P
Sbjct: 256 --AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPR 313
Query: 802 S*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLN 861
R++ DK + + EV +LL+A IREVKYP WLAN V+VKKANGKWRMC+D+TDLN
Sbjct: 314 KQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLN 373
Query: 862 KACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYR 921
KACPKD +PLP IDSLVD A+ +EL+SL+D YSG HQI M DE KT+F+T YCY
Sbjct: 374 KACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYL 433
Query: 922 TMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKH 981
MP GLKNAG ++ R+ +V Q+GRN+ YVDD+IVKS + +H DL+E F R+
Sbjct: 434 RMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQA 493
Query: 982 NMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAAL 1041
++LNPEKC FGV+ GKFLG +++++GIE NP K +AI +M+ P+ K QRLTGR+A+L
Sbjct: 494 GLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASL 553
Query: 1042 SRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYF 1101
+RF+ +S +R+ PFF+ L+ F+W ++AF LK+ L L+ P+ G PL LY
Sbjct: 554 NRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTTLTPPMSGAPLLLYV 613
Query: 1102 AVSDGALSSVMLQE-IDGE---HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPY 1157
A S A+S+ ++QE +DG+ +YFVS L ++ Y ++EK AVL+ +R+LR Y
Sbjct: 614 AASHSAVSAALVQEKLDGQVKRQAPIYFVSEVLSLSKKNYTELEKVLYAVLMASRKLRHY 673
Query: 1158 FQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT 1217
FQ++ + V + PL+ +++ + +GR+ W+ EL+E+ ++Y R ++ +Q+LADF+ + T
Sbjct: 674 FQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFIADWT 733
Query: 1218 P----DRFERVDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYE 1273
P + + + WT+F DGS + G+GA L P ++ + + K +F TNN AEYE
Sbjct: 734 PGAQEEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKICYAAKLDFNCTNNIAEYE 793
Query: 1274 ALIAGLKLAREVKIR 1288
AL+ GL+ + + IR
Sbjct: 794 ALVLGLRKLKAMGIR 808
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 561 bits (1445), Expect = e-158
Identities = 315/795 (39%), Positives = 465/795 (57%), Gaps = 23/795 (2%)
Query: 509 GGGGDTHAARKRHVRAVNSVHEVAFG-------FVHPDITISMADFEGIKPHKDDPIVVQ 561
GG A +K+ A V V + H IT S D + +D +V+
Sbjct: 22 GGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVIS 81
Query: 562 LRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDL 621
+ F V VL+D GS+ADII+ AF ++ ++ + L GF G Q++ G I +
Sbjct: 82 CVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLCGFGGRQIVALGKITM 141
Query: 622 DTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGK 681
FG R +V + ++ + YN IIGR TLN A++ A+L +K P G +
Sbjct: 142 SVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKMPSDQGPIA- 200
Query: 682 LKVDQKMARECYNNCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKAL 741
+ Q+ AR N + A+ H EA E R E + P
Sbjct: 201 IHGSQEAARRAEGN----WTDSKAI--HNIDGAEAC-EXYKFRREKAASADQPKPMLLCE 253
Query: 742 KFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPV 801
++ + +G++L+EEQE L + L N D+FAWS D+ G++ + I H L ++PS +P
Sbjct: 254 DIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPR 313
Query: 802 S*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLN 861
R++ DK + + EV +LL+A IREVKYP WLAN V+VKKANGKWRMC+D+TDLN
Sbjct: 314 KQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLN 373
Query: 862 KACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYR 921
KACPKD +PLP IDSLVD + +EL+SL+D YSG HQI M DE KT+F+T YCY
Sbjct: 374 KACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYCYL 433
Query: 922 TMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKH 981
MP GLKNAG ++ R+ +V Q+GRN+ YVDD+IVKS + +H DL+E F R+
Sbjct: 434 RMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQA 493
Query: 982 NMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAAL 1041
++LNPEKC FGV+ GKFLG +++++GIE NP K +AI +M+ P+ K QRLTGR+A+L
Sbjct: 494 GLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASL 553
Query: 1042 SRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYF 1101
+RF+ +S +R+ PFF+ L+ F+W ++AF LK+ L L+ P+ G PL LY
Sbjct: 554 NRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTALTPPMPGAPLLLYV 613
Query: 1102 AVSDGALSSVMLQE-IDGEHR---IVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPY 1157
A S A+S+ ++QE +DG+ R VYFVS L ++ Y ++EK VL+ +R+LR Y
Sbjct: 614 AASHSAVSAALVQEKLDGQTRKQVPVYFVSEVLSISKKNYTELEKVLYVVLMASRKLRHY 673
Query: 1158 FQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT 1217
FQ++ + V + PL+ +++ + +GR+ W+ EL+E+ ++Y R ++ +Q+LADF+ + T
Sbjct: 674 FQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFIADWT 733
Query: 1218 PDRFE---RVDTQ-WTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYE 1273
P E DT+ WT+F DGS + G+GA L P ++ K +F TNN AEYE
Sbjct: 734 PGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKTCYVAKLDFSCTNNIAEYE 793
Query: 1274 ALIAGLKLAREVKIR 1288
AL+ GL+ + + IR
Sbjct: 794 ALLLGLRKLKAMGIR 808
>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar-group)]
gi|50923259|ref|XP_471990.1| OSJNBb0085H11.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1605
Score = 546 bits (1408), Expect = e-153
Identities = 310/784 (39%), Positives = 450/784 (56%), Gaps = 45/784 (5%)
Query: 518 RKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLL 574
+K +R V+++ G +++ I+ D EG+ DP+V+ F VRR+L+
Sbjct: 456 KKMRIRTVHNITSAGKGTPQYLNQLISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILV 515
Query: 575 DQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVL 634
+GSSAD+I+ +A+ K+GL LTP +L GF GE V V G L G E R
Sbjct: 516 GRGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVQVLGQALLLIALGSGENRREE 575
Query: 635 KVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYN 694
+V + V+ + +YN I GR TLN+ A+ +L +K P G G + V
Sbjct: 576 QVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP---GLTGVIVVKGLQPSAASK 632
Query: 695 NCLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD----RTLKI 750
L A++ + +EA + +PTP + ++ D + + +
Sbjct: 633 GDL-------AIINREVHNVEAEPYDRPKHAP----KPTPHSKIIKVQIDDANPTKLVSL 681
Query: 751 GTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGG 810
G + EE+ + ++L +N+D+FAWS ++ G+ + I H LA+ KP R++
Sbjct: 682 GDDMGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMSA 741
Query: 811 DKGKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYP 870
D+ +AV+ EV KLL A I+E+ +P WLAN V+V+K+ K RMCVD+TDLNKACPKD +P
Sbjct: 742 DRQEAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCVDFTDLNKACPKDDFP 801
Query: 871 LPSIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNA 930
LP ID LVD +G EL+S +DAYSG HQI M+P D KTAF+T +C+ MPFGL+N
Sbjct: 802 LPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMPFGLRNT 861
Query: 931 GATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKC 990
GAT+ RL+ +V Q+GRN+E YVDD++VKS + DH +L+E F +R ++LNPEKC
Sbjct: 862 GATFARLVYKVLCKQLGRNVEAYVDDIVVKSRKAFDHVSNLQETFDNLRAAGIKLNPEKC 921
Query: 991 YFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGD 1050
FGV+ GK LGF+++ +GIE NP+K AIQQMK PS+V EVQ+L GRI ALSRFL K+ +
Sbjct: 922 VFGVRAGKLLGFLVSEKGIEANPKKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSKAAE 981
Query: 1051 RSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSS 1110
R PFFK LR + F WT EC+ AF LK+ L SP L P L LY A S A+S+
Sbjct: 982 RGLPFFKTLRGSGKFNWTPECQAAFDELKQYLQSPSALISPAPRSKLLLYLAASPVAVSA 1041
Query: 1111 VMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLP 1170
V++QE + + VY VS LQGA+ RY ++EK A A+ P
Sbjct: 1042 VLVQETEFGQKPVYLVSEALQGAKTRYIEMEKLAYAL---------------------YP 1080
Query: 1171 LRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELTP---DRFERVDTQ 1227
L ++L+ +++GRL W+ ELS + L++ R AV +Q LAD V E TP + V+
Sbjct: 1081 LGEILRDKEVTGRLSKWAAELSPFDLRFVARTAVKSQVLADCVAEWTPVFTPEPKPVEQF 1140
Query: 1228 WTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKI 1287
W + +GS + G G L P + + + + +F TNN A YEA++ GL+ A+ + +
Sbjct: 1141 WVMCSNGSWSHKGVGIAAVLISPNGVPIRYAARLQFDTTNNAAGYEAVLLGLRKAKALGV 1200
Query: 1288 RSLL 1291
R LL
Sbjct: 1201 RRLL 1204
Score = 41.6 bits (96), Expect = 0.18
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 231 QQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEM--- 287
++ GES++EYM R+S A +V+D + A GLL G L K+ K +++E +
Sbjct: 300 KRPGESIREYMRRFSQARCQVQDITEASVINAASAGLLEGELTRKIATKEPQTLEHLLRI 359
Query: 288 -RARASTYILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKGKSVFKP 346
+ + +K +A + + R K+ + + +Q KG +V P
Sbjct: 360 IAVSQGARRIPSDGKLYKLSKAVMAVEEVQALR--KEFDAQQASNHQQPVRKKGATVEAP 417
Query: 347 TKEQLYPRRDDYEQRRPWQSK 367
+E + + EQR+ Q +
Sbjct: 418 -REAVQEKAPPAEQRQDAQRR 437
>gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533914|ref|NP_921259.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|14018058|gb|AAK52121.1| Putative retroelement [Oryza
sativa]
Length = 2079
Score = 538 bits (1385), Expect = e-151
Identities = 301/762 (39%), Positives = 442/762 (57%), Gaps = 35/762 (4%)
Query: 537 HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDN 596
+PD + ++ + P + PIVV+ + + V RVL+D GSS ++++ + +G+ +
Sbjct: 852 YPDSDLHVSHILAV-PRRRYPIVVEPTIRNIKVARVLIDGGSSINLLFASTLEAMGIPQS 910
Query: 597 DLTPYAGTLVGFAGEQVM-VRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNT 655
+LTP G + G I L FG+ R ++ + V + +YN IIGR
Sbjct: 911 ELTPTDQPFHGITPQSSSRPLGKITLPVTFGQANNFRTEQITFDVAEFDTAYNAIIGRTA 970
Query: 656 LNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNNCLNLYGKKSALVGHRCYEIE 715
L + A A+ +K P G + ++ + K+A +C L++ + +
Sbjct: 971 LAKFVAASHYAYQVLKMPGPKGTI-TIQGNAKLAVQCDKRSLDMVEQTPTPPATSEPPKK 1029
Query: 716 ASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAW 775
N P+ G V + + + + ++ E L L +N D+FAW
Sbjct: 1030 VRKPNKTPKPNGAV----------------KIVPLSSANPDKNELALIAFLRDNADVFAW 1073
Query: 776 SCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYP 835
DMPG+ I H+L + P KPV RR D+ +A+++E+DKLL A FIREV +P
Sbjct: 1074 QPSDMPGVPREVIEHKLMVRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVLHP 1133
Query: 836 TWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSG 895
WLAN VIV+KANGKWRMCVD+TDLNKACPKD +PLP ID LV +G ELLS +DAYSG
Sbjct: 1134 EWLANPVIVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVYSTAGCELLSFLDAYSG 1193
Query: 896 NHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVD 955
HQI M DE+KTAF+T +C+ MPFGL AG T+QR + G N+E YVD
Sbjct: 1194 YHQISMVKEDEEKTAFITPFGVFCHVKMPFGLITAGNTFQRTL--------GNNVEAYVD 1245
Query: 956 DMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYFGVQGGKFLGFMITSRGIEINPEK 1015
++VK+ DL E F +R++ + LNPEKC FGV GK LGF+++ RGIE NPEK
Sbjct: 1246 GIVVKTKTSDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEK 1305
Query: 1016 CKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLRKNVAFEWTAECEEAF 1075
KAI+ MKSP+ +KEVQ+LTG +AALSRF+ + G++ PFF L+K F WT E +EAF
Sbjct: 1306 IKAIENMKSPTRLKEVQKLTGYMAALSRFVARIGEQGQPFFALLKKQDKFVWTQETKEAF 1365
Query: 1076 VRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVMLQEIDGEHRIVYFVSHTLQGAEV 1135
+ LK LS+PP+L P L LY A + ++S V++ E + R VY+VS L A+
Sbjct: 1366 ITLKRYLSNPPVLVAPQPNEELFLYIAATPHSVSIVIVVEREKVQRPVYYVSEALHDAKT 1425
Query: 1136 RYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYS 1195
RY +I+K A+++T+R+LR YFQ+ V + + PL +V++ D+ GR+ W VELS++
Sbjct: 1426 RYPQIQKLLYAIIMTSRKLRHYFQAHRVTIVSSFPLGEVVRNKDVVGRIAKWVVELSQFD 1485
Query: 1196 LQYDKRGAVGAQSLADFVVELT-PDRFERVDTQ-----WTLFVDGSSNSSGSGAGVTLEG 1249
+ + + A+ +Q LADFV + T PD + D Q WT+ DG+ NS G+GAG+ L
Sbjct: 1486 VHFMPQTAIKSQVLADFVADWTMPD--NKSDNQGDNETWTMAFDGALNSQGAGAGLILTS 1543
Query: 1250 PGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSLL 1291
P + ++ F+ATNN AEYE L+AG++ A + ++ L+
Sbjct: 1544 PSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGVKRLI 1585
Score = 90.1 bits (222), Expect = 4e-16
Identities = 80/337 (23%), Positives = 133/337 (38%), Gaps = 58/337 (17%)
Query: 104 DFYRREQRDDGSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNT 163
D + R RD A S A R F + V P+ + ++ Y G DP++ L ++T
Sbjct: 543 DRHPRRSRDHRQPTAPS-AGCRAFGRSLRDVRWPERFRPGAIEKYDGSIDPEEFLQVYST 601
Query: 164 KMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTI 223
+ A D P+ K +A +W LP SIS++ D +F+ F +
Sbjct: 602 VLYAAGADDNAVANYLPTALKGSARSWLMHLPPYSISSWADLWQQFVANFQGTYKRHAIE 661
Query: 224 NDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRK---P 280
+DL+ + Q GESL+EY+ R++ + + + AFK+G+ +L +
Sbjct: 662 DDLHALTQNSGESLREYVRRFNECRNTIPEITDASVIRAFKSGVRDRYTTQELATRHITT 721
Query: 281 ARSMEEMRARASTYILDEEDDAFKRKRAKLEKGDTSPKRAKKDSSGEDKGDGKQQRPGKG 340
R + ++ R + DDA +RK K + G K++ D+S K K ++ GK
Sbjct: 722 TRRLFQIVERCA-----HVDDALRRKNDKPKTG--GEKKSAADTSESSK--KKNRKNGKR 772
Query: 341 KSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDLSDMLQGARDANLVDEPE 400
K+ Q E + A AN P
Sbjct: 773 KA----------------------------QAE-------------VLAAEYAN---PPR 788
Query: 401 APKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDK 437
P Q D K WC H++ H +DC ++ ++K
Sbjct: 789 RPDPQGSDTK-KSWCPIHKTDRHSLEDCLVFKKSLEK 824
>gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532648|ref|NP_920626.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881548|gb|AAM00949.1| Putative retroelement [Oryza
sativa]
Length = 1945
Score = 526 bits (1354), Expect = e-147
Identities = 333/908 (36%), Positives = 476/908 (51%), Gaps = 93/908 (10%)
Query: 415 CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEERADTKGKK 474
C H ++ H DC+ ++ D+ + A K +E T KK
Sbjct: 607 CPHHPNSNHVAKDCFVYKQFADQYTKT------------------ARKNSDEEQSTSRKK 648
Query: 475 KQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAVNSVH--- 529
A F H +N I FGG + RK+ + R +N+V
Sbjct: 649 DDGDAPAG-------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREINAVQPDT 694
Query: 530 -------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 579
E+A F HPD + + P+V+ + + +RR L+D GS+
Sbjct: 695 PQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRTLIDGGSA 745
Query: 580 ADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 635
+I++ D + + ++L P+ G + G + + G I L FG E R
Sbjct: 746 LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTRENFRTEN 802
Query: 636 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNN 695
+ + V +Y+ I+GR L + AV ++ +K P G V L+ D K A C
Sbjct: 803 ISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIKQAVTCDKE 861
Query: 696 CLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD---RTLKIGT 752
++ + + A+ + EG I TK K G+ +T KI
Sbjct: 862 SCDMAQTREMASAREDIRLAAATAS-----EGE------IPATKTSKSGESEAKTKKIPL 910
Query: 753 RLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDK 812
++ +T N D+FAW DMPGI I H L + KP+ RR D+
Sbjct: 911 DPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 964
Query: 813 GKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLP 872
A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+CPKD + LP
Sbjct: 965 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1024
Query: 873 SIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGA 932
ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPFGLKNAGA
Sbjct: 1025 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGA 1084
Query: 933 TYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYF 992
TYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+LNPEKC F
Sbjct: 1085 TYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKGDLISDLEETFVSIRAFRMKLNPEKCTF 1144
Query: 993 GVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRS 1052
GV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+ + G+R
Sbjct: 1145 GVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERG 1204
Query: 1053 FPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVM 1112
PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY + + +S+V+
Sbjct: 1205 MPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVL 1264
Query: 1113 LQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVR 1166
+ E + E R +YFVS L ++ RY +++K +L+T R+L YFQ V V
Sbjct: 1265 VVEREEECHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVV 1324
Query: 1167 TDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT---PDRFER 1223
T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T D
Sbjct: 1325 TSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAE 1384
Query: 1224 VDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAR 1283
WT+ DGS SG+GAGV L P L L F A++N AEYEAL+ GL++A
Sbjct: 1385 NMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAI 1444
Query: 1284 EVKIRSLL 1291
+ I+ L+
Sbjct: 1445 SLGIKRLI 1452
Score = 87.4 bits (215), Expect = 3e-15
Identities = 75/327 (22%), Positives = 140/327 (41%), Gaps = 37/327 (11%)
Query: 112 DDGSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAAS 171
D + D VA F ++D+ V P K ++ Y G ++P+ L + +
Sbjct: 409 DSHDDDLDGVAAF---TDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGD 465
Query: 172 DAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQ 231
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q
Sbjct: 466 SKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQ 525
Query: 232 QEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEM---- 287
+ GESL++Y+ R+S K+ D AF G+ L K RKP R+++ M
Sbjct: 526 KSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKA 585
Query: 288 -------RARASTY--ILDEE-----------DDAFKRKRAKLEKGDTSPKRAKKDSSGE 327
R+R +T+ I++ + D F K + D K A+K+S E
Sbjct: 586 NDHSSRQRSRVNTFDKIMNSQCPHHPNSNHVAKDCFVYK----QFADQYTKTARKNSD-E 640
Query: 328 DKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDLSDML 387
++ +++ G + F+ +++L ++ P +S R+++ T+ +N D
Sbjct: 641 EQSTSRKKDDGDAPAGFQDHRKEL-----NHIFGGPLAYESKRKQKLTEREINAVQPDTP 695
Query: 388 QGARDANLVDEPEAPKYQPRDANPKKW 414
Q R + + + + + R +P ++
Sbjct: 696 QYLRWSEIAIKFDRSDHPDRVVHPGRY 722
>gb|AAN04936.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1479
Score = 526 bits (1354), Expect = e-147
Identities = 333/908 (36%), Positives = 476/908 (51%), Gaps = 93/908 (10%)
Query: 415 CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGLWRNGGDQNKAHKREEERADTKGKK 474
C H ++ H DC+ ++ D+ + A K +E T KK
Sbjct: 607 CPHHPNSNHVAKDCFVYKQFADQYTKT------------------ARKNSDEEQSTSRKK 648
Query: 475 KQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRHV--RAVNSVH--- 529
A F H +N I FGG + RK+ + R +N+V
Sbjct: 649 DDGDAPAG-------FQDHRKE----LNHI---FGGPLAYESKRKQKLTEREINAVQPDT 694
Query: 530 -------EVAFGFV---HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 579
E+A F HPD + + P+V+ + + +RR L+D GS+
Sbjct: 695 PQYLRWSEIAIKFDRSDHPDRVVHPGRY---------PLVLDPVVRNVKLRRTLIDGGSA 745
Query: 580 ADIIYGDAFDKLGLTDNDL----TPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 635
+I++ D + + ++L P+ G + G + + G I L FG E R
Sbjct: 746 LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTRENFRTEN 802
Query: 636 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNN 695
+ + V +Y+ I+GR L + AV ++ +K P G V L+ D K A C
Sbjct: 803 ISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLSLRSDIKQAVTCDKE 861
Query: 696 CLNLYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGD---RTLKIGT 752
++ + + A+ + EG I TK K G+ +T KI
Sbjct: 862 SCDMAQTREMASAREDIRLAAATAS-----EGE------IPATKTSKSGESEAKTKKIPL 910
Query: 753 RLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSLKPVS*LRRRLGGDK 812
++ +T N D+FAW DMPGI I H L + KP+ RR D+
Sbjct: 911 DPSDPTKT------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 964
Query: 813 GKAVQQEVDKLLAAEFIREVKYPTWLANVVIVKKANGKWRMCVDYTDLNKACPKDSYPLP 872
A+++E+ KLLAA FI+EV +P WLAN V+V+K G+WRMCVDYTDLNK+CPKD + LP
Sbjct: 965 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1024
Query: 873 SIDSLVDGASGNELLSLMDAYSGNHQIRMHPADEDKTAFMTARANYCYRTMPFGLKNAGA 932
ID +VD +G ELLS +D YSG HQIR+ +D KT+F+T YCY TMPFGLKNAGA
Sbjct: 1025 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGA 1084
Query: 933 TYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCYF 992
TYQR++ R F+ Q+GRN+E YVDD++VK+ + D DLEE F IR M+LNPEKC F
Sbjct: 1085 TYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKGDLISDLEETFVSIRAFRMKLNPEKCTF 1144
Query: 993 GVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPKSGDRS 1052
GV GK LGFM++ RGI+ NPEK AI MK PS K+VQ+LTG +AALSRF+ + G+R
Sbjct: 1145 GVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERG 1204
Query: 1053 FPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDGALSSVM 1112
PFFK L+K F+W E ++AF K+LL+ PP+L+ P PL LY + + +S+V+
Sbjct: 1205 MPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVL 1264
Query: 1113 LQEIDGE------HRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVR 1166
+ E + E R +YFVS L ++ RY +++K +L+T R+L YFQ V V
Sbjct: 1265 VVEREEECHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVV 1324
Query: 1167 TDLPLRQVLQKPDLSGRLVAWSVELSEYSLQYDKRGAVGAQSLADFVVELT---PDRFER 1223
T PL +L + +GR+ W++EL + + R ++ +Q+LADFV E T D
Sbjct: 1325 TSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAE 1384
Query: 1224 VDTQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAR 1283
WT+ DGS SG+GAGV L P L L F A++N AEYEAL+ GL++A
Sbjct: 1385 NMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAI 1444
Query: 1284 EVKIRSLL 1291
+ I+ L+
Sbjct: 1445 SLGIKRLI 1452
Score = 87.4 bits (215), Expect = 3e-15
Identities = 75/327 (22%), Positives = 140/327 (41%), Gaps = 37/327 (11%)
Query: 112 DDGSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAAS 171
D + D VA F ++D+ V P K ++ Y G ++P+ L + +
Sbjct: 409 DSHDDDLDGVAAF---TDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGD 465
Query: 172 DAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQ 231
P +A +W LPRG+I ++ + F+ F +P T DLYN+ Q
Sbjct: 466 SKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQ 525
Query: 232 QEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMEEM---- 287
+ GESL++Y+ R+S K+ D AF G+ L K RKP R+++ M
Sbjct: 526 KSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKA 585
Query: 288 -------RARASTY--ILDEE-----------DDAFKRKRAKLEKGDTSPKRAKKDSSGE 327
R+R +T+ I++ + D F K + D K A+K+S E
Sbjct: 586 NDHSSRQRSRVNTFDKIMNSQCPHHPNSNHVAKDCFVYK----QFADQYTKTARKNSD-E 640
Query: 328 DKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDLSDML 387
++ +++ G + F+ +++L ++ P +S R+++ T+ +N D
Sbjct: 641 EQSTSRKKDDGDAPAGFQDHRKEL-----NHIFGGPLAYESKRKQKLTEREINAVQPDTP 695
Query: 388 QGARDANLVDEPEAPKYQPRDANPKKW 414
Q R + + + + + R +P ++
Sbjct: 696 QYLRWSEIAIKFDRSDHPDRVVHPGRY 722
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,262,585,929
Number of Sequences: 2540612
Number of extensions: 104337162
Number of successful extensions: 842777
Number of sequences better than 10.0: 37954
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 34551
Number of HSP's that attempted gapping in prelim test: 711855
Number of HSP's gapped (non-prelim): 88291
length of query: 1291
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1151
effective length of database: 507,674,714
effective search space: 584333595814
effective search space used: 584333595814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0331c.2