BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0322.5
(210 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM10366.1| AT3g22845/MWI23_22 [Arabidopsis thaliana] gi|1797... 313 3e-84
ref|XP_469701.1| putative cop-coated vesicle membrane protein [O... 293 2e-78
ref|XP_507305.1| PREDICTED P0702E04.27 gene product [Oryza sativ... 127 3e-28
gb|AAF13086.1| putative coated vesicle membrane protein [Arabido... 116 5e-25
gb|AAM66112.1| putative coated vesicle membrane protein [Arabido... 116 5e-25
gb|AAH44095.1| Rnp24-prov protein [Xenopus laevis] 103 2e-21
dbj|BAD05160.1| emp24/gp25L/p24 family protein [Dictyostelium di... 102 9e-21
gb|AAH65441.1| Coated vesicle membrane protein [Danio rerio] gi|... 100 2e-20
emb|CAG05307.1| unnamed protein product [Tetraodon nigroviridis] 99 6e-20
ref|XP_509466.1| PREDICTED: similar to coated vesicle membrane p... 99 8e-20
gb|AAX37039.1| coated vesicle membrane protein [synthetic constr... 99 8e-20
sp|P49020|P24_CRIGR Cop-coated vesicle membrane protein p24 prec... 99 1e-19
ref|NP_113910.1| coated vesicle membrane protein [Rattus norvegi... 99 1e-19
ref|NP_001006186.1| similar to coated vesicle membrane protein [... 99 1e-19
ref|NP_062744.1| coated vesicle membrane protein [Mus musculus] ... 99 1e-19
ref|NP_572165.1| CG3564-PA [Drosophila melanogaster] gi|7290498|... 96 7e-19
gb|EAL31726.1| GA17526-PA [Drosophila pseudoobscura] 95 1e-18
gb|EAL31725.1| GA17522-PA [Drosophila pseudoobscura] 95 1e-18
dbj|BAC41019.1| unnamed protein product [Mus musculus] 95 1e-18
gb|EAA50680.1| hypothetical protein MG04439.4 [Magnaporthe grise... 90 4e-17
>gb|AAM10366.1| AT3g22845/MWI23_22 [Arabidopsis thaliana]
gi|17979492|gb|AAL50082.1| AT3g22845/MWI23_22
[Arabidopsis thaliana] gi|42565125|ref|NP_188924.3|
emp24/gp25L/p24 protein-related [Arabidopsis thaliana]
Length = 214
Score = 313 bits (801), Expect = 3e-84
Identities = 150/205 (73%), Positives = 175/205 (85%), Gaps = 5/205 (2%)
Query: 11 VIFFLGTLIYN----VFSLSISLNDVECVSEHA-QSGDSVTGNFVVMDHDIFWSSDHPGI 65
V +G ++ N + SLS+++ND ECV E+ GD+V+GNFVV+DHDIFW SDHPG+
Sbjct: 10 VFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGL 69
Query: 66 DFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEH 125
DFTVT+P GN V +LKGTSGDKFEFKAP++G+YKFCFHNP STPETVSFYIHVGHIP+EH
Sbjct: 70 DFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIPNEH 129
Query: 126 DLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYIL 185
DLAKDEHLDP+NVKIAELREALES++ EQKYLKARD RHR+TNEST+ RVIFYTV EYI
Sbjct: 130 DLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVGEYIF 189
Query: 186 LAVTSILQVVYIRRLFSKSFAYNRV 210
LA S LQV+YIR+LFSKS AYNRV
Sbjct: 190 LAAASGLQVLYIRKLFSKSVAYNRV 214
>ref|XP_469701.1| putative cop-coated vesicle membrane protein [Oryza sativa
(japonica cultivar-group)] gi|30017578|gb|AAP13000.1|
putative cop-coated vesicle membrane protein [Oryza
sativa (japonica cultivar-group)]
Length = 210
Score = 293 bits (750), Expect = 2e-78
Identities = 137/188 (72%), Positives = 161/188 (84%), Gaps = 1/188 (0%)
Query: 24 SLSISLNDVECVSEHAQ-SGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+LS+++ D EC+ E GD+V+GNFVV+DHDIFWSSDHPGID TVT+PGGN V++LKG
Sbjct: 23 ALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTLKG 82
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAE 142
SGDKFEFKAP+ G+YKFCFHNP PETVSFYIHVGHIP+EH+LAKDEHLDPINVKIAE
Sbjct: 83 KSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAE 142
Query: 143 LREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRLFS 202
L+EALES+ EQKYLKAR+ RHR+TNEST+ RV+FYT+ EY+ S LQVVYIRRLFS
Sbjct: 143 LKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVVYIRRLFS 202
Query: 203 KSFAYNRV 210
K+ AYNRV
Sbjct: 203 KNVAYNRV 210
>ref|XP_507305.1| PREDICTED P0702E04.27 gene product [Oryza sativa (japonica
cultivar-group)] gi|50947949|ref|XP_483502.1| coated
vesicle membrane protein-like [Oryza sativa (japonica
cultivar-group)] gi|42761389|dbj|BAD11657.1| coated
vesicle membrane protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 212
Score = 127 bits (318), Expect = 3e-28
Identities = 72/205 (35%), Positives = 110/205 (53%), Gaps = 2/205 (0%)
Query: 7 ICTLVIFFLGTLIYNVFSLSISLNDVECVSEHAQ-SGDSVTGNFVVMDHDIFWSSDHPGI 65
+C LV+ + L+ ++ ++ EC S + + GD+V +FVV+ D W G+
Sbjct: 9 VCLLVLCTVA-LLRPAAAIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGV 67
Query: 66 DFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEH 125
D V +P G V + + DKFEF + G+++FCF N ETV F +HVGH
Sbjct: 68 DLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHVGHFSYFD 127
Query: 126 DLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYIL 185
AKDEH P+ +IA+L EAL +I EQ +L+A+ +R NE+ R + +LE
Sbjct: 128 QHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKALLESAA 187
Query: 186 LAVTSILQVVYIRRLFSKSFAYNRV 210
L S++QV +RRLF + +RV
Sbjct: 188 LIAASVIQVYLLRRLFERKLGTSRV 212
>gb|AAF13086.1| putative coated vesicle membrane protein [Arabidopsis thaliana]
gi|6648180|gb|AAF21178.1| putative coated vesicle
membrane protein [Arabidopsis thaliana]
gi|14532910|gb|AAK64137.1| putative coated vesicle
membrane protein [Arabidopsis thaliana]
gi|13430712|gb|AAK25978.1| putative coated vesicle
membrane protein [Arabidopsis thaliana]
gi|15231496|ref|NP_187425.1| emp24/gp25L/p24 family
protein [Arabidopsis thaliana]
Length = 208
Score = 116 bits (290), Expect = 5e-25
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 1/203 (0%)
Query: 9 TLVIFFLGTLIYNVFSLSISLNDVECVSEHAQ-SGDSVTGNFVVMDHDIFWSSDHPGIDF 67
T+V+ L + ++ EC S A+ GD++ +FVV+ D W + G+D
Sbjct: 6 TIVLLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDL 65
Query: 68 TVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEHDL 127
+ P G +H + K +F + G+Y+FCF N ET+ F + +GH
Sbjct: 66 VIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQH 125
Query: 128 AKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLA 187
AKDEH P+ +I++L EAL +I EQ +L+A+ +R NE+ R + + E L
Sbjct: 126 AKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALI 185
Query: 188 VTSILQVVYIRRLFSKSFAYNRV 210
S LQV +RRLF + +RV
Sbjct: 186 GASFLQVYLLRRLFERKLGMSRV 208
>gb|AAM66112.1| putative coated vesicle membrane protein [Arabidopsis thaliana]
Length = 208
Score = 116 bits (290), Expect = 5e-25
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 1/203 (0%)
Query: 9 TLVIFFLGTLIYNVFSLSISLNDVECVSEHAQ-SGDSVTGNFVVMDHDIFWSSDHPGIDF 67
T+V+ L + ++ EC S A+ GD++ +FVV+ D W + G+D
Sbjct: 6 TIVLLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDL 65
Query: 68 TVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEHDL 127
+ P G +H + K +F + G+Y+FCF N ET+ F + +GH
Sbjct: 66 VIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQH 125
Query: 128 AKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLA 187
AKDEH P+ +I++L EAL +I EQ +L+A+ +R NE+ R + + E L
Sbjct: 126 AKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALI 185
Query: 188 VTSILQVVYIRRLFSKSFAYNRV 210
S LQV +RRLF + +RV
Sbjct: 186 GASFLQVYLLRRLFERKLGMSRV 208
>gb|AAH44095.1| Rnp24-prov protein [Xenopus laevis]
Length = 201
Score = 103 bits (258), Expect = 2e-21
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
Query: 5 SKICTLVIFFLGTLIYNVFSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPG 64
S++ TL+ FF T + + +SI + EC E SG + F V +
Sbjct: 5 SELVTLLAFFSATA--SGYFVSIDAHAEECFFEQVTSGTKMGLIFEVAEGGFL------D 56
Query: 65 IDFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIP 122
ID +T P ++ S K+ F A +G YKFCF N MST P+ V F I +G P
Sbjct: 57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116
Query: 123 SEHDLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLE 182
D+ + H + + I EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176
Query: 183 YILLAVTSILQVVYIRRLF 201
++L ++ Q+ Y++R F
Sbjct: 177 ALVLVAMTLGQIYYLKRFF 195
>dbj|BAD05160.1| emp24/gp25L/p24 family protein [Dictyostelium discoideum]
gi|66806475|ref|XP_636960.1| hypothetical protein
DDB0201636 [Dictyostelium discoideum]
gi|60465361|gb|EAL63452.1| hypothetical protein
DDB0201636 [Dictyostelium discoideum]
Length = 205
Score = 102 bits (253), Expect = 9e-21
Identities = 69/202 (34%), Positives = 99/202 (48%), Gaps = 11/202 (5%)
Query: 5 SKICTLVIFFL---GTLIYNVFSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSD 61
+K+ LVI L I FS +S EC+ E S T F V+
Sbjct: 4 NKLLLLVIALLCIASNSIVESFSFKVSAKVEECIYEEIGVDLSFTAMFQVIQ------GG 57
Query: 62 HPGIDFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMS--TPETVSFYIHVG 119
IDFT+ +P V+S + S ++ G+Y FCF N MS T +TVSF + VG
Sbjct: 58 FNDIDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVG 117
Query: 120 HIPSEHDLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYT 179
++AK + L PI I L + + ++ EQ Y K R+ HR T EST +RV++++
Sbjct: 118 ESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWS 177
Query: 180 VLEYILLAVTSILQVVYIRRLF 201
V E +L SI Q+ Y+RR F
Sbjct: 178 VFEAFVLIALSIWQIYYLRRFF 199
>gb|AAH65441.1| Coated vesicle membrane protein [Danio rerio]
gi|29477153|gb|AAH50165.1| Coated vesicle membrane
protein [Danio rerio] gi|41054687|ref|NP_955842.1|
coated vesicle membrane protein [Danio rerio]
Length = 201
Score = 100 bits (250), Expect = 2e-20
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 11 VIFFLGTLIYNV--FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFT 68
+I L L Y + +SI + EC E SG ++ F V + ID
Sbjct: 7 LIVLLCALSYTASGYFVSIDAHAEECFYERVNSGTKMSLMFEVAEGGFL------DIDVK 60
Query: 69 VTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHD 126
+T P G ++ S K+ A +G YKFCF N MST P+ V F I +G P D
Sbjct: 61 ITGPDGKQIYKGDRESSGKYSVAAHMDGTYKFCFSNEMSTMTPKIVMFTIDIGEAPKGQD 120
Query: 127 LAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILL 186
+ + H + + I EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L
Sbjct: 121 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 180
Query: 187 AVTSILQVVYIRRLF 201
++ Q+ Y++R F
Sbjct: 181 VAMTLGQIYYLKRFF 195
>emb|CAG05307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 493
Score = 99.4 bits (246), Expect = 6e-20
Identities = 55/181 (30%), Positives = 91/181 (49%), Gaps = 8/181 (4%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+ +SI + EC E SG + F V + ID +T P G ++
Sbjct: 21 YFVSIDAHAEECFYERVNSGTKMGLMFEVAEGGFL------DIDVEITGPDGKQIYKGDR 74
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHDLAKDEHLDPINVKI 140
S K+ A +G YKFCF N MST P+ V F I +G P D+ + H + + I
Sbjct: 75 ESSGKYSVAAHMDGTYKFCFSNKMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134
Query: 141 AELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRL 200
EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L ++ Q+ Y++R
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194
Query: 201 F 201
F
Sbjct: 195 F 195
>ref|XP_509466.1| PREDICTED: similar to coated vesicle membrane protein [Pan
troglodytes] gi|67970704|dbj|BAE01694.1| unnamed protein
product [Macaca fascicularis] gi|60822185|gb|AAX36599.1|
coated vesicle membrane protein [synthetic construct]
gi|19683999|gb|AAH25957.1| Coated vesicle membrane
protein [Homo sapiens] gi|3914237|sp|Q15363|P24_HUMAN
Cop-coated vesicle membrane protein p24 precursor (p24A)
gi|1212965|emb|CAA63069.1| transmembrane protein [Homo
sapiens] gi|49456325|emb|CAG46483.1| RNP24 [Homo
sapiens] gi|49456287|emb|CAG46464.1| RNP24 [Homo
sapiens] gi|5803149|ref|NP_006806.1| coated vesicle
membrane protein [Homo sapiens]
Length = 201
Score = 99.0 bits (245), Expect = 8e-20
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 11 VIFFLGTLIYNV--FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFT 68
++ L L+ V + +SI + EC E SG + F V + ID
Sbjct: 7 LLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFL------DIDVE 60
Query: 69 VTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHD 126
+T P ++ S K+ F A +G YKFCF N MST P+ V F I +G P D
Sbjct: 61 ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD 120
Query: 127 LAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILL 186
+ + H + + I EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L
Sbjct: 121 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 180
Query: 187 AVTSILQVVYIRRLF 201
++ Q+ Y++R F
Sbjct: 181 VAMTLGQIYYLKRFF 195
>gb|AAX37039.1| coated vesicle membrane protein [synthetic construct]
Length = 202
Score = 99.0 bits (245), Expect = 8e-20
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 11 VIFFLGTLIYNV--FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFT 68
++ L L+ V + +SI + EC E SG + F V + ID
Sbjct: 7 LLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFL------DIDVE 60
Query: 69 VTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHD 126
+T P ++ S K+ F A +G YKFCF N MST P+ V F I +G P D
Sbjct: 61 ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD 120
Query: 127 LAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILL 186
+ + H + + I EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L
Sbjct: 121 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 180
Query: 187 AVTSILQVVYIRRLF 201
++ Q+ Y++R F
Sbjct: 181 VAMTLGQIYYLKRFF 195
>sp|P49020|P24_CRIGR Cop-coated vesicle membrane protein p24 precursor
gi|924850|gb|AAA82925.1| CHOp24
Length = 196
Score = 98.6 bits (244), Expect = 1e-19
Identities = 55/181 (30%), Positives = 91/181 (49%), Gaps = 8/181 (4%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+ +SI + EC E SG + F V + ID +T P ++
Sbjct: 16 YFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 69
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHDLAKDEHLDPINVKI 140
S K+ F A +G YKFCF N MST P+ V F I +G P D+ + H + + I
Sbjct: 70 ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 129
Query: 141 AELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRL 200
EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L ++ Q+ Y++R
Sbjct: 130 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 189
Query: 201 F 201
F
Sbjct: 190 F 190
>ref|NP_113910.1| coated vesicle membrane protein [Rattus norvegicus]
gi|57105540|ref|XP_534646.1| PREDICTED: similar to
coated vesicle membrane protein [Canis familiaris]
gi|38304009|gb|AAH62036.1| Coated vesicle membrane
protein [Rattus norvegicus] gi|61820673|ref|XP_588281.1|
PREDICTED: similar to coated vesicle membrane protein
[Bos taurus] gi|1213221|emb|CAA63068.1| transmembrane
protein [Rattus norvegicus] gi|3914232|sp|Q63524|P24_RAT
Cop-coated vesicle membrane protein p24 precursor (p24A)
(RNP21.4)
Length = 201
Score = 98.6 bits (244), Expect = 1e-19
Identities = 55/181 (30%), Positives = 91/181 (49%), Gaps = 8/181 (4%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+ +SI + EC E SG + F V + ID +T P ++
Sbjct: 21 YFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHDLAKDEHLDPINVKI 140
S K+ F A +G YKFCF N MST P+ V F I +G P D+ + H + + I
Sbjct: 75 ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134
Query: 141 AELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRL 200
EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L ++ Q+ Y++R
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194
Query: 201 F 201
F
Sbjct: 195 F 195
>ref|NP_001006186.1| similar to coated vesicle membrane protein [Gallus gallus]
gi|53131623|emb|CAG31833.1| hypothetical protein [Gallus
gallus]
Length = 201
Score = 98.6 bits (244), Expect = 1e-19
Identities = 55/181 (30%), Positives = 91/181 (49%), Gaps = 8/181 (4%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+ +SI + EC E SG + F V + ID +T P ++
Sbjct: 21 YFVSIDAHAEECFLERVPSGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHDLAKDEHLDPINVKI 140
S K+ F A +G YKFCF N MST P+ V F I +G P D+ + H + + I
Sbjct: 75 ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134
Query: 141 AELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRL 200
EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L ++ Q+ Y++R
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194
Query: 201 F 201
F
Sbjct: 195 F 195
>ref|NP_062744.1| coated vesicle membrane protein [Mus musculus]
gi|52789376|gb|AAH83140.1| Coated vesicle membrane
protein [Mus musculus] gi|12585284|sp|Q9R0Q3|P24_MOUSE
Cop-coated vesicle membrane protein p24 precursor (p24A)
(Sid 394) gi|5931557|dbj|BAA84689.1| Sid394p [Mus
musculus]
Length = 201
Score = 98.6 bits (244), Expect = 1e-19
Identities = 55/181 (30%), Positives = 91/181 (49%), Gaps = 8/181 (4%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
+ +SI + EC E SG + F V + ID +T P ++
Sbjct: 21 YFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIPSEHDLAKDEHLDPINVKI 140
S K+ F A +G YKFCF N MST P+ V F I +G P D+ + H + + I
Sbjct: 75 ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134
Query: 141 AELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRL 200
EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E ++L ++ Q+ Y++R
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194
Query: 201 F 201
F
Sbjct: 195 F 195
>ref|NP_572165.1| CG3564-PA [Drosophila melanogaster] gi|7290498|gb|AAF45951.1|
CG3564-PA [Drosophila melanogaster]
gi|16767926|gb|AAL28181.1| GH04989p [Drosophila
melanogaster]
Length = 208
Score = 95.9 bits (237), Expect = 7e-19
Identities = 60/201 (29%), Positives = 97/201 (47%), Gaps = 16/201 (7%)
Query: 11 VIFFLGTLIY-----NVFSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGI 65
V+ +G+L+ + F +S+ ++ EC E+ + G F V+D +
Sbjct: 8 VLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFL------DV 61
Query: 66 DFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMS--TPETVSFYIHVGHIPS 123
D ++ P + +H + S K+ F AP G Y CF+N S TP+ V F I VG P
Sbjct: 62 DIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQ 121
Query: 124 EHDLAKDEHL---DPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTV 180
A E + I EL L S+ EQ+Y+ RD HR NE+T +RV+ ++
Sbjct: 122 RAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWST 181
Query: 181 LEYILLAVTSILQVVYIRRLF 201
E ++L + ++ QV Y++R F
Sbjct: 182 FEALVLVLMTVGQVYYLKRFF 202
>gb|EAL31726.1| GA17526-PA [Drosophila pseudoobscura]
Length = 722
Score = 95.1 bits (235), Expect = 1e-18
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
F +S+ ++ EC E+ + G F V+D +D ++ P + +H +
Sbjct: 25 FIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFL------DVDIKISGPENHVMHESEK 78
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMS--TPETVSFYIHVGHIPSEHDLAKDEHL---DPIN 137
S K+ F AP G Y CF+N S TP+ V F I VG P A E +
Sbjct: 79 ESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLE 138
Query: 138 VKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYI 197
I EL L S+ EQ+Y+ RD HR NEST +RV+ ++ E ++L + ++ QV Y+
Sbjct: 139 DMIRELSGTLTSVKHEQEYMHVRDKIHRSVNESTNSRVVLWSTFEALVLILMTVGQVYYL 198
Query: 198 RRLFSK 203
+R F +
Sbjct: 199 KRFFEQ 204
>gb|EAL31725.1| GA17522-PA [Drosophila pseudoobscura]
Length = 208
Score = 94.7 bits (234), Expect = 1e-18
Identities = 58/184 (31%), Positives = 89/184 (47%), Gaps = 11/184 (5%)
Query: 23 FSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKG 82
F +S+ ++ EC E+ + G F V+D +D ++ P + +H +
Sbjct: 25 FIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFL------DVDIKISGPENHVMHESEK 78
Query: 83 TSGDKFEFKAPQNGIYKFCFHNPMS--TPETVSFYIHVGHIPSEHDLAKDEHL---DPIN 137
S K+ F AP G Y CF+N S TP+ V F I VG P A E +
Sbjct: 79 ESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLE 138
Query: 138 VKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYI 197
I EL L S+ EQ+Y+ RD HR NEST +RV+ ++ E ++L + ++ QV Y+
Sbjct: 139 DMIRELSGTLTSVKHEQEYMHVRDKIHRSVNESTNSRVVLWSTFEALVLILMTVGQVYYL 198
Query: 198 RRLF 201
+R F
Sbjct: 199 KRFF 202
>dbj|BAC41019.1| unnamed protein product [Mus musculus]
Length = 159
Score = 94.7 bits (234), Expect = 1e-18
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 65 IDFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCFHNPMST--PETVSFYIHVGHIP 122
ID +T P ++ S K+ F A +G YKFCF N MST P+ V F I +G P
Sbjct: 15 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 74
Query: 123 SEHDLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLE 182
D+ + H + + I EL A+ ++ EQ+Y++ R+ HR N++T +RV+ ++ E
Sbjct: 75 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 134
Query: 183 YILLAVTSILQVVYIRRLF 201
++L ++ Q+ Y++R F
Sbjct: 135 ALVLVAMTLGQIYYLKRFF 153
>gb|EAA50680.1| hypothetical protein MG04439.4 [Magnaporthe grisea 70-15]
gi|39944914|ref|XP_361994.1| hypothetical protein
MG04439.4 [Magnaporthe grisea 70-15]
Length = 203
Score = 90.1 bits (222), Expect = 4e-17
Identities = 58/171 (33%), Positives = 85/171 (48%), Gaps = 7/171 (4%)
Query: 33 ECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFKA 92
EC E+ D +T F V D + F S+ + IDF +TNP G K TS + F A
Sbjct: 32 ECFYENLHKDDKMTVTFQVGDRE-FGSAGNLDIDFWITNPEGQYETFSKSTSNGDYSFTA 90
Query: 93 PQNGIYKFCFHNPM--STPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESI 150
+G Y +CF N +T + VSF +H SEHD +D P+ + +L E L +
Sbjct: 91 HLDGQYTYCFGNEHWGATSKEVSFNVHGIVYVSEHDQPQD----PLESSVRQLSELLAQV 146
Query: 151 ITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRLF 201
EQ Y+ R+ HR T EST +RV ++ + + + QV ++RR F
Sbjct: 147 KDEQSYIILRERTHRNTAESTNSRVKWWNLFVICFIIGEYVFQVWWLRRFF 197
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,559,273
Number of Sequences: 2540612
Number of extensions: 15061255
Number of successful extensions: 39167
Number of sequences better than 10.0: 338
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 38705
Number of HSP's gapped (non-prelim): 354
length of query: 210
length of database: 863,360,394
effective HSP length: 122
effective length of query: 88
effective length of database: 553,405,730
effective search space: 48699704240
effective search space used: 48699704240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0322.5