BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0322.4
(153 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_476057.1| unknown protein [Oryza sativa (japonica cultiva... 204 5e-52
ref|XP_493752.1| EST AU056133(S20320) corresponds to a region of... 198 2e-50
gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gi|20260634|gb|A... 187 4e-47
dbj|BAB09109.1| unnamed protein product [Arabidopsis thaliana] g... 187 4e-47
ref|NP_701958.1| hypothetical protein PF14_0070 [Plasmodium falc... 110 9e-24
emb|CAH74352.1| conserved hypothetical protein [Plasmodium chaba... 108 3e-23
ref|XP_624239.1| PREDICTED: similar to GA14052-PA [Apis mellifera] 106 1e-22
emb|CAH72069.1| novel protein (FLJ10330) [Homo sapiens] gi|55958... 105 2e-22
gb|AAH50900.1| PRP38 pre-mRNA processing factor 38 (yeast) domai... 105 2e-22
emb|CAH72068.1| novel protein (FLJ10330) [Homo sapiens] gi|55958... 105 2e-22
ref|XP_547250.1| PREDICTED: similar to RIKEN cDNA E230011A21 gen... 105 2e-22
ref|XP_513609.1| PREDICTED: similar to syntaxin 4 binding protei... 105 2e-22
ref|XP_587705.1| PREDICTED: similar to FLJ10330 protein, partial... 105 2e-22
dbj|BAA91546.1| unnamed protein product [Homo sapiens] gi|892235... 105 2e-22
ref|NP_001019476.1| hypothetical protein LOC499691 [Rattus norve... 105 2e-22
gb|AAH40127.1| PRPF38B protein [Homo sapiens] 105 2e-22
gb|AAH07757.1| PRPF38B protein [Homo sapiens] 105 2e-22
emb|CAG07709.1| unnamed protein product [Tetraodon nigroviridis] 105 2e-22
dbj|BAB31082.1| unnamed protein product [Mus musculus] 105 2e-22
dbj|BAB30042.1| unnamed protein product [Mus musculus] 105 2e-22
>ref|XP_476057.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|47777442|gb|AAT38075.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 434
Score = 204 bits (518), Expect = 5e-52
Identities = 95/108 (87%), Positives = 100/108 (91%)
Query: 7 MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCR 66
MEIQTSG+PI+ L+EKVLCMNI+SSDYFKELYRLKTY EVIDEIYNQVDHVEPWM GNCR
Sbjct: 1 MEIQTSGKPIDLLMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60
Query: 67 GPSTFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
GPST FCLLY FFTM LTVKQMHGLLKHPDSPYIR +GFLYLRYV DP
Sbjct: 61 GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADP 108
>ref|XP_493752.1| EST AU056133(S20320) corresponds to a region of the predicted
gene.~Similar to Caenorhabditis elegans cosmid D1054;
hypothetical protein (Z74030) [Oryza sativa (japonica
cultivar-group)]
Length = 437
Score = 198 bits (504), Expect = 2e-50
Identities = 94/111 (84%), Positives = 101/111 (90%)
Query: 7 MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCR 66
MEIQ+SGRPI+ L+EKVL +NILSSDYFKELYRLKTY EVIDEIYNQVDHVEPWM GNCR
Sbjct: 12 MEIQSSGRPIDVLMEKVLSVNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 71
Query: 67 GPSTFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDPNTV 117
GPS+ FCLLY FFTM LTVKQMHGLLKHPDSPYIR VGFLYLRYV +P T+
Sbjct: 72 GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVAEPKTL 122
>gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gi|20260634|gb|AAM13215.1| unknown
protein [Arabidopsis thaliana]
gi|30693071|ref|NP_851101.1| pre-mRNA splicing factor
PRP38 family protein (SRL1) [Arabidopsis thaliana]
Length = 393
Score = 187 bits (475), Expect = 4e-47
Identities = 91/110 (82%), Positives = 96/110 (86%)
Query: 8 EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRG 67
EIQ++GR ESLLEKVL MNILSSDYFKELY LKTY EVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3 EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62
Query: 68 PSTFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDPNTV 117
PST +CLLY FFTM LTVKQMHGLLKH DSPYIR VGFLYLRYV D T+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTL 112
>dbj|BAB09109.1| unnamed protein product [Arabidopsis thaliana]
gi|30693073|ref|NP_198553.2| pre-mRNA splicing factor
PRP38 family protein (SRL1) [Arabidopsis thaliana]
Length = 385
Score = 187 bits (475), Expect = 4e-47
Identities = 91/110 (82%), Positives = 96/110 (86%)
Query: 8 EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRG 67
EIQ++GR ESLLEKVL MNILSSDYFKELY LKTY EVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3 EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62
Query: 68 PSTFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDPNTV 117
PST +CLLY FFTM LTVKQMHGLLKH DSPYIR VGFLYLRYV D T+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTL 112
>ref|NP_701958.1| hypothetical protein PF14_0070 [Plasmodium falciparum 3D7]
gi|23497134|gb|AAN36682.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 690
Score = 110 bits (274), Expect = 9e-24
Identities = 52/88 (59%), Positives = 65/88 (73%)
Query: 27 NILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRGPSTFFCLLY*FFTMMLTVK 86
NILSS+YFK L +KT+ EV+DEI++ DHVEP+ G+ R PST FC LY FFTM L+ K
Sbjct: 190 NILSSEYFKSLIPIKTFKEVVDEIHSYADHVEPYCIGSNRAPSTLFCCLYKFFTMQLSEK 249
Query: 87 QMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
Q+ L+++ DS YIR GFLYLRYV P
Sbjct: 250 QLKSLIENKDSCYIRACGFLYLRYVHSP 277
>emb|CAH74352.1| conserved hypothetical protein [Plasmodium chabaudi]
Length = 635
Score = 108 bits (270), Expect = 3e-23
Identities = 52/98 (53%), Positives = 68/98 (69%)
Query: 20 LEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRGPSTFFCLLY*FF 79
+ +L NILSS+YF+ L LKT+ EV+DEI + DHVEP+ G+ R PST FC LY FF
Sbjct: 167 VNNLLRNNILSSEYFRSLINLKTFKEVLDEILSYADHVEPYCIGSTRAPSTLFCCLYKFF 226
Query: 80 TMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDPNTV 117
TM LT KQ+ L+ + +S Y+R GFLYLRYV P+ +
Sbjct: 227 TMQLTKKQLKSLIDNKESCYVRACGFLYLRYVHCPSNL 264
>ref|XP_624239.1| PREDICTED: similar to GA14052-PA [Apis mellifera]
Length = 374
Score = 106 bits (265), Expect = 1e-22
Identities = 58/114 (50%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NI SS YFK LY LKTY EVIDEIY +V H+EPW M G R
Sbjct: 48 LNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEKGSRKTAGQTGMCGGVR 107
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST +CLLY FT+ LT KQ++GL+ HPDSPYIR +GF+Y+RY P
Sbjct: 108 GVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALGFMYIRYTQPP 161
>emb|CAH72069.1| novel protein (FLJ10330) [Homo sapiens] gi|55958248|emb|CAI12933.1|
novel protein (FLJ10330) [Homo sapiens]
Length = 546
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>gb|AAH50900.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
[Mus musculus] gi|30354152|gb|AAH52077.1| PRP38 pre-mRNA
processing factor 38 (yeast) domain containing B [Mus
musculus] gi|30794464|ref|NP_080121.1| PRP38 pre-mRNA
processing factor 38 (yeast) domain containing B [Mus
musculus]
Length = 542
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 59 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 172
>emb|CAH72068.1| novel protein (FLJ10330) [Homo sapiens] gi|55958247|emb|CAI12932.1|
novel protein (FLJ10330) [Homo sapiens]
gi|31753070|gb|AAH53838.1| PRPF38B protein [Homo
sapiens]
Length = 190
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>ref|XP_547250.1| PREDICTED: similar to RIKEN cDNA E230011A21 gene [Canis familiaris]
Length = 1160
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 3 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 62
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 63 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 116
>ref|XP_513609.1| PREDICTED: similar to syntaxin 4 binding protein UNC-18c [Pan
troglodytes]
Length = 1397
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 3 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 62
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 63 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 116
>ref|XP_587705.1| PREDICTED: similar to FLJ10330 protein, partial [Bos taurus]
Length = 530
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>dbj|BAA91546.1| unnamed protein product [Homo sapiens] gi|8922358|ref|NP_060531.1|
PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>ref|NP_001019476.1| hypothetical protein LOC499691 [Rattus norvegicus]
gi|50925827|gb|AAH79264.1| Hypothetical protein
LOC499691 [Rattus norvegicus]
Length = 542
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>gb|AAH40127.1| PRPF38B protein [Homo sapiens]
Length = 303
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>gb|AAH07757.1| PRPF38B protein [Homo sapiens]
Length = 465
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 171
>emb|CAG07709.1| unnamed protein product [Tetraodon nigroviridis]
Length = 464
Score = 105 bits (263), Expect = 2e-22
Identities = 58/114 (50%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ N+LSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 33 LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 92
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 93 GVGTGGIVSTAFCLLYKLFTLKLTRKQLMGLITHTDSPYIRALGFMYIRYTQPP 146
>dbj|BAB31082.1| unnamed protein product [Mus musculus]
Length = 310
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 59 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 172
>dbj|BAB30042.1| unnamed protein product [Mus musculus]
Length = 346
Score = 105 bits (263), Expect = 2e-22
Identities = 59/114 (51%), Positives = 70/114 (60%), Gaps = 19/114 (16%)
Query: 20 LEKVLCMNILSSDYFK-ELYRLKTYLEVIDEIYNQVDHVEPW------------MAGNCR 66
L ++ NILSS YFK +LY LKTY EV+DEIY +V HVEPW M G R
Sbjct: 59 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118
Query: 67 GP------STFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDP 114
G ST FCLLY FT+ LT KQ+ GL+ H DSPYIR +GF+Y+RY P
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP 172
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.352 0.162 0.599
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,572,292
Number of Sequences: 2540612
Number of extensions: 8757789
Number of successful extensions: 33635
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 33525
Number of HSP's gapped (non-prelim): 70
length of query: 153
length of database: 863,360,394
effective HSP length: 129
effective length of query: 24
effective length of database: 535,621,446
effective search space: 12854914704
effective search space used: 12854914704
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0322.4