BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0320a.8
(1611 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ... 852 0.0
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana] 836 0.0
dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|g... 834 0.0
gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana] 833 0.0
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana] 833 0.0
dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] 829 0.0
gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T... 825 0.0
ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cu... 767 0.0
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 752 0.0
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 726 0.0
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap... 717 0.0
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 714 0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 709 0.0
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 708 0.0
emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|32692... 708 0.0
gb|AAK51235.1| polyprotein [Arabidopsis thaliana] 707 0.0
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 699 0.0
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi... 691 0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ... 680 0.0
gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H... 665 0.0
>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
gi|7444442|pir||T02087 gag/pol polyprotein - maize
retrotransposon Hopscotch
Length = 1439
Score = 852 bits (2201), Expect = 0.0
Identities = 506/1193 (42%), Positives = 692/1193 (57%), Gaps = 153/1193 (12%)
Query: 467 PQAMLATVPAHHS-SPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQS 525
P A AH + S V W D+GAT H+T + H + +Q++ NG G+ I +
Sbjct: 305 PDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISN 364
Query: 526 IGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTY 585
IG+A++P+S + SL L+ +L VPS KNL+SV R DN+VF FH++H + + T
Sbjct: 365 IGNAIVPTS---SRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTK 421
Query: 586 ELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATV 645
+LL G DGLY PL P DL+
Sbjct: 422 AVLLHGKC-RDGLY----PL-----------------------------PPHPDLRL--- 444
Query: 646 SPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVL--KQTLSLCNIS 703
N SST L + G D+ H + + + L T S+C+
Sbjct: 445 ----------KHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCD-- 492
Query: 704 VPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTC 763
AC +K H+LP + S + + P L+F+D++GPA ++S + Y+++
Sbjct: 493 ------------ACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPA-IDSFGRYKYYVSF 539
Query: 764 VDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLG 823
+D +K+TW++ L+ KSD +F FQ +VE FG K+ + Q+D GGE++ L +HF+ +G
Sbjct: 540 IDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIG 599
Query: 824 IIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTT 883
I H+++CPHTH QNG+ ERKHRHIVE GLALL+ +SMPL++WDHAFLAA YLINR + T
Sbjct: 600 IHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKT 659
Query: 884 LQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKC 943
+ +P KL G PD+ SL++FG AC+P LRPYN +KL S CVF+GYS HKG+KC
Sbjct: 660 IAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKC 719
Query: 944 LD-QSGRIYISKDVLFHEHRFPYP--------------ILFP---------TDHSSSSSA 979
LD +GRIYIS+DV+F EH FP+ +L P TDH+++
Sbjct: 720 LDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPG 779
Query: 980 EFYPL-----------STIPIISHTA-----------------PPSSPVLAA-------S 1004
PL S +P ++TA PSS V AA S
Sbjct: 780 SSSPLPFLAQHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVS 839
Query: 1005 GHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVI 1064
++ P P+ PP AT S + P + +P SS A SA + AAAP
Sbjct: 840 ANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAP--GSSVAHQTPDSAPLSAAAP--- 894
Query: 1065 VNTHPMQTRAKNGIVKPRLQPTLLLTH-------LEPTSVKQAMKDAKWYKAMQEEYTAL 1117
+TR ++GI KP+ + + EP+SV +A+ D +W AM+ E+ AL
Sbjct: 895 ------RTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQAL 948
Query: 1118 MNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
N TWTLVP R + CKW++++K N DGSI++ KARLVAKG+ Q G DY +TFSP
Sbjct: 949 QKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSP 1008
Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF-EHKDKNLVCKLQ 1236
VVK T+RL+LSLA+S+ W L+QLDV NAFL+G+LEE VYM QPPGF + N C LQ
Sbjct: 1009 VVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQ 1068
Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
K+LYGLKQ PRAW+ RL E L GF SK D SLF Y + IY+LVYVDDIIITG+S
Sbjct: 1069 KSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSS 1128
Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
I + A+L FA+K LG L YFLG++V H LLL Q KY DLL +V M
Sbjct: 1129 PHAIDNVLAKLKDDFAIKDLGDLHYFLGIEV-HRKGDGLLLCQEKYARDLLKRVGMECCK 1187
Query: 1357 AISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPH 1414
+ TP+ KLS + G+ L ++ T+YRSVVGALQY T+TRP++S+A+N+VCQF+ P
Sbjct: 1188 PVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPT 1247
Query: 1415 EEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFL 1474
+ HW AVKRILR ++ T+ G+ ++P + L L A+ DADW PDDR+ST G +FL
Sbjct: 1248 DLHWTAVKRILRNIQHTIGLGLTIRP---SLSLMLSAFSDADWAGCPDDRKSTGGYALFL 1304
Query: 1475 GYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMS 1533
G NLISW +KKQS V+RSSTEAEY+++AN TAE++W+QSLL EL I T IP ++CDN+
Sbjct: 1305 GPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLG 1364
Query: 1534 TVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
L+ PI + RTKH+E+D FVR++V K L ++ + + Q AD FTKAL+
Sbjct: 1365 ATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALT 1417
Score = 116 bits (290), Expect = 7e-24
Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 70/368 (19%)
Query: 9 SMPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLT 68
+M SS S+S++ +F+ +S KL N+ WK QV IR+ +L + + P K ++
Sbjct: 2 AMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTIS 61
Query: 69 E-EDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAK 127
+ D+ NP + W +D + +LLS+LS +L +V+ C S VW + +++
Sbjct: 62 DASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSH 121
Query: 128 SRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEY 187
SRA+ R L KG + +E+ +++ + L + G+P+ + + + GL E++
Sbjct: 122 SRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDF 181
Query: 188 SALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAP 247
+ L+T + ++ T ++ ++S+E R
Sbjct: 182 NPLVTAVVARSDPITPGDLYTQLLSYENRMH----------------------------- 212
Query: 248 APPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG 307
SS++ Q A + +P + + G G S G GRGRG
Sbjct: 213 ------------LQTGSSSLMQSSANARSPGRGMSWGRSGGRG-------FSRGRGRGRG 253
Query: 308 R--------GRGRNV------------QCTYCSKWGHDAASCWSRPSGVSSNANSSANSA 347
GRG N +C CS+ GH A +CW R SANSA
Sbjct: 254 PSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSA 313
Query: 348 QSGNSGSN 355
N GSN
Sbjct: 314 AHQN-GSN 320
>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 836 bits (2159), Expect = 0.0
Identities = 487/1196 (40%), Positives = 672/1196 (55%), Gaps = 124/1196 (10%)
Query: 462 STGMHPQAMLATVPAHHSSPVT---WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNG 518
S +P A + P + + ++ W DSGATHH+T + H P + E++ + +G
Sbjct: 399 SPSQYPNATVPWQPRANMAAMSYNPWLLDSGATHHLTTDLNNLALHQPYNGGEEVTIADG 458
Query: 519 QGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCS 578
LPI GS+ L + + SL L +L VP++ KNL+SV + N V F H
Sbjct: 459 STLPITHTGSSTLSTQ---SRSLALNNILYVPNLHKNLISVYKLCNANKVSVEFFPAHFQ 515
Query: 579 VHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAI 638
V T LL G D+ LY + P S++P+S ASP
Sbjct: 516 VKDLSTGARLLQGRTKDE-LYEWPVP---------SNTPISLF------------ASP-- 551
Query: 639 DLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLS 698
T +P WHSRLGHP VLK +S
Sbjct: 552 -----TPKTTLPS-----------------------------WHSRLGHPSPPVLKSLVS 577
Query: 699 LCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFL 758
++ V ++ C C ++K H+LP S+ + TP E V++D+W + + S F
Sbjct: 578 QFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDVW-TSPVTSVDNFK 636
Query: 759 YFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSH 818
Y+L VD T+YTW++PLK+KS TF+ F+A+VE +F K++++ +D GGEF L
Sbjct: 637 YYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTKIRTLYSDNGGEFIALRQF 696
Query: 819 FQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINR 878
GI H + PHT NG ERKHRHI+ETGL LL+ AS+P +W +AF A YLINR
Sbjct: 697 LLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSYWTYAFGTAVYLINR 756
Query: 879 MSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINH 938
+ ++ L SPY KL+ P++ L+VFG +CFP+LRPY ++KL S+ CVF+GYS+
Sbjct: 757 LPSSVLNNESPYSKLFKTSPNYLKLRVFGCSCFPWLRPYTNHKLERRSQPCVFLGYSLTQ 816
Query: 939 KGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAE-----FYPLSTIPIISH 992
Y CLD+ SGR+Y S+ V F E +FP+ I S+SS E P S IPI S
Sbjct: 817 SAYLCLDRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSS 876
Query: 993 T-----APPSSPVLAASGHSSP-------------------------------GPQDSPQ 1016
+ AP S P L++ H P GP S
Sbjct: 877 SPPLVQAPSSLPPLSSDSHRRPNAETSSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSS 936
Query: 1017 QQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAA------PPVIVNTHPM 1070
Q ++ S+ + + P P P +S+ + S+S A + PP N HPM
Sbjct: 937 AQSQNNSNPSSSIQTQNEPNPSPSPTPQNSSPESSPSSSTSATSTVPNPPPPPPTNNHPM 996
Query: 1071 QTRAKNGIVKPRLQPTLLLTHLE-----PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTL 1125
+TRAKN I KP+ + +LL ++ P +V QA++D KW AM EE A + N T+ L
Sbjct: 997 RTRAKNHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEKWRNAMGEEINAQIRNNTFEL 1056
Query: 1126 VPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVR 1185
VP N+ + KWI+ +K P+G++++YKARLVA+G+ Q G YSETFSPVVK +T+R
Sbjct: 1057 VPPKPNQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIR 1116
Query: 1186 LILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQ 1244
L+L LA+SR W ++QLDVNNAFL G L +EVY+ QPPGF D+ + VC+L+KALYGLKQ
Sbjct: 1117 LVLQLAVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQ 1176
Query: 1245 APRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLT 1304
APRAW+ L+ + GF S D S+F Y + +Y LVYVDDII+TG+S +L+
Sbjct: 1177 APRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDDIIVTGSSDALVMAFI 1236
Query: 1305 AQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQC 1364
L F+LK L YFLG++ T S G L L Q KY+ DLL+++ MLDA +STPM
Sbjct: 1237 TALSRRFSLKDPTDLVYFLGIEATRTSQG-LHLMQHKYVYDLLSRMKMLDAKPVSTPMAT 1295
Query: 1365 GVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRI 1424
KLS G AL +P EYR+V+G+LQY TRP+I++AVN++ QFM +P + HW+A KR+
Sbjct: 1296 HPKLSLYSGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQAAKRV 1355
Query: 1425 LRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAK 1484
LRYL GT THGILL+ S PL L A+ DADW D DD ST+ V+LG I+W++K
Sbjct: 1356 LRYLAGTATHGILLRSNS---PLSLHAFSDADWAGDNDDFVSTNAYIVYLGSTPIAWSSK 1412
Query: 1485 KQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPIL 1543
KQ VARSSTEAEYR++ANTT+E+ WV SLLTEL I +P +YCDN+ L+ NP+
Sbjct: 1413 KQKGVARSSTEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVGATYLSANPVF 1472
Query: 1544 HTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
H+R KH+ +D F+R+ V +L V H+ + Q AD TK L FL K+ V
Sbjct: 1473 HSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGV 1528
Score = 115 bits (288), Expect = 1e-23
Identities = 85/357 (23%), Positives = 159/357 (43%), Gaps = 54/357 (15%)
Query: 6 SSPSMPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEK 65
+S ++ +S S+S L+ ++ KL SNF W++QV+ ++ + L ++ ++P
Sbjct: 104 ASETVITSDSTSLLNVNMTNVT--KLTSSNFLMWRRQVQALLNGYDLTGYIDGSIVVPPA 161
Query: 66 FLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFN 125
+T +T VNP F W++QD L+++ LL +S ++ P + + S ++W ++ +
Sbjct: 162 TITANGAVT--VNPAFKHWQRQDQLIYSALLGAISISVQPILSRTTTSAEIWTKLMDTYA 219
Query: 126 AKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSE 185
S + QLR ++K K TK+ EF Q + + LA +G+P+ + +E I +GLS+
Sbjct: 220 KPSWSHIQQLRQQIKQWKKDTKSIDEFFQGLVMRFDQLALLGKPMESEEQMEVIVEGLSD 279
Query: 186 EYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSST 245
+Y ++ I + +++E+ +++HE + A A + P S+
Sbjct: 280 DYKQVIDQIQGREVPPSLTEIHEKLLNHEVKLQ----------------AAASSLPISAN 323
Query: 246 APAPPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRG 305
A + PP + + + + NR+ NR + Y +
Sbjct: 324 AASYRPP------------------------ANNKHNNSNNYRGQNRNNNNRGANSYQQP 359
Query: 306 RG---RGRGRNVQCTYCSKWGHDAASCWSRPSGVSSNANSSANSAQSGNSGSNFSVP 359
R RG +C C +GH A C S S A S S + N +VP
Sbjct: 360 RNDQPSSRGYQGKCQICGVFGHSARRC-------SQLQMSGAYSTPSPSQYPNATVP 409
>dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|gb|AAK62788.1|
polyprotein, putative [Arabidopsis thaliana]
Length = 1466
Score = 834 bits (2155), Expect = 0.0
Identities = 512/1264 (40%), Positives = 692/1264 (54%), Gaps = 157/1264 (12%)
Query: 416 PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
PY + G+Q G S R Q + +Q P P P Q P+A LA
Sbjct: 274 PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324
Query: 476 AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
+ S+ W DSGATHH+T++ H P + + ++V +G +PI GS L +
Sbjct: 325 PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382
Query: 536 NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
P L L +L VP+I KNL+SV R N V F V +T LL G D
Sbjct: 383 RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439
Query: 596 DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
+ ++ P+ SS P+S ASP
Sbjct: 440 E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458
Query: 656 SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
S + + WH+RLGHP +L +S ++SV + F C
Sbjct: 459 -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501
Query: 716 ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
C ++K +++P S S P E +++D+W L S + Y++ VD T+YTW++P
Sbjct: 502 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560
Query: 776 LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
LK+KS TFI F+ ++E +F ++ + +D GGEF L +F + GI H + PHT
Sbjct: 561 LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620
Query: 836 QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
NG ERKHRHIVETGL LLSHAS+P +W +AF A YLINR+ T LQ SP+ KL+G
Sbjct: 621 HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680
Query: 896 QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
P++ L+VFG AC+P+LRPYN +KL S++CVF+GYS+ Y CL Q+ R+YIS+
Sbjct: 681 TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740
Query: 955 DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
V F E+ FP+ T + SS + P +T+P + H A PP
Sbjct: 741 HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800
Query: 997 SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
SSP ++S SSP GPQ + Q Q + T S+ + S
Sbjct: 801 SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860
Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
+ P SP P P++SA S+ TS S++ PP +
Sbjct: 861 NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920
Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
+NTH M TRAK GI+KP + +L L EP + QA+KD +W AM E A +
Sbjct: 921 QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980
Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
N TW LVP P + T VGC+WI+ K N DGS+N+YKARLVAKGY+Q G DY+ETFSP
Sbjct: 981 GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1040
Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
V+K ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100
Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
KALYGLKQAPRAW+ L+ L+ GF S D SLF + +YMLVYVDDI+ITG
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160
Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
+L+ L F++K +L YFLG++ + G L L+Q +YI DLL + NM+ A
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219
Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
++TPM KLS G+ L DPTEYR +VG+LQY TRP+IS+AVN++ QFM P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279
Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
H +A+KRILRYL GT HGI L+ L L AY DADW D DD ST+G V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336
Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
+ ISW++KKQ V RSSTEAEYRS+ANT++E+ W+ SLLTEL I T P +YCDN+
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396
Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
L NP+ H+R KH+ +D F+R +VQ +L V HV + Q AD TK LS T F
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456
Query: 1596 KLNV 1599
K+ V
Sbjct: 1457 KIGV 1460
Score = 107 bits (266), Expect = 4e-21
Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 30 KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
KL +N+ W +QV + ++L F+ +P + + VNP + W++QD
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82
Query: 90 LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
L+++ +L +S ++ P V + + Q+WE + + S TQLR +LK TKGTKT
Sbjct: 83 LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142
Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
+++Q + T + LA +G+P+ + +E + + L EEY ++ I + T T++E+
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202
Query: 210 VISHEAR 216
+++HE++
Sbjct: 203 LLNHESK 209
>gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana]
Length = 1466
Score = 833 bits (2151), Expect = 0.0
Identities = 511/1264 (40%), Positives = 691/1264 (54%), Gaps = 157/1264 (12%)
Query: 416 PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
PY + G+Q G S R Q + +Q P P P Q P+A LA
Sbjct: 274 PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324
Query: 476 AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
+ S+ W DSGATHH+T++ H P + + ++V +G +PI GS L +
Sbjct: 325 PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382
Query: 536 NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
P L L +L VP+I KNL+SV R N V F V +T LL G D
Sbjct: 383 RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439
Query: 596 DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
+ ++ P+ SS P+S ASP
Sbjct: 440 E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458
Query: 656 SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
S + + WH+RLGHP +L +S ++SV + F C
Sbjct: 459 -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501
Query: 716 ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
C ++K +++P S S P E +++D+W L S + Y++ VD T+YTW++P
Sbjct: 502 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560
Query: 776 LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
LK+KS TFI F+ ++E +F ++ + +D GGEF L +F + GI H + PHT
Sbjct: 561 LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620
Query: 836 QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
NG ERKHRHIVETGL LLSHAS+P +W +AF A YLINR+ T LQ SP+ KL+G
Sbjct: 621 HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680
Query: 896 QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
P++ L+VFG AC+P+LRPYN +KL S++CVF+GYS+ Y CL Q+ R+YIS+
Sbjct: 681 TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740
Query: 955 DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
V F E+ FP+ T + SS + P +T+P + H A PP
Sbjct: 741 HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800
Query: 997 SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
SSP ++S SSP GPQ + Q Q + T S+ + S
Sbjct: 801 SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860
Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
+ P SP P P++SA S+ TS S++ PP +
Sbjct: 861 NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920
Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
+NTH M TRAK GI+KP + +L L EP + QA+KD +W AM E A +
Sbjct: 921 QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980
Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
N TW LVP P + T VGC+WI+ K N DGS+N+YKAR VAKGY+Q G DY+ETFSP
Sbjct: 981 GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1040
Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
V+K ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100
Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
KALYGLKQAPRAW+ L+ L+ GF S D SLF + +YMLVYVDDI+ITG
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160
Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
+L+ L F++K +L YFLG++ + G L L+Q +YI DLL + NM+ A
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219
Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
++TPM KLS G+ L DPTEYR +VG+LQY TRP+IS+AVN++ QFM P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279
Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
H +A+KRILRYL GT HGI L+ L L AY DADW D DD ST+G V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336
Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
+ ISW++KKQ V RSSTEAEYRS+ANT++E+ W+ SLLTEL I T P +YCDN+
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396
Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
L NP+ H+R KH+ +D F+R +VQ +L V HV + Q AD TK LS T F
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456
Query: 1596 KLNV 1599
K+ V
Sbjct: 1457 KIGV 1460
Score = 107 bits (266), Expect = 4e-21
Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 30 KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
KL +N+ W +QV + ++L F+ +P + + VNP + W++QD
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82
Query: 90 LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
L+++ +L +S ++ P V + + Q+WE + + S TQLR +LK TKGTKT
Sbjct: 83 LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142
Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
+++Q + T + LA +G+P+ + +E + + L EEY ++ I + T T++E+
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202
Query: 210 VISHEAR 216
+++HE++
Sbjct: 203 LLNHESK 209
>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
Length = 1431
Score = 833 bits (2151), Expect = 0.0
Identities = 511/1264 (40%), Positives = 690/1264 (54%), Gaps = 157/1264 (12%)
Query: 416 PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
PY + G+Q G S R Q + +Q P P P Q P+A LA
Sbjct: 239 PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 289
Query: 476 AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
+ S+ W DSGATHH+T++ H P + + ++V +G +PI GS L +
Sbjct: 290 PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 347
Query: 536 NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
P L L +L VP+I KNL+SV R N V F V +T LL G D
Sbjct: 348 RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 404
Query: 596 DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
+ ++ P+ SS P+S ASP
Sbjct: 405 E---LYEWPIA-------SSQPVSLF------------ASP------------------- 423
Query: 656 SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
S + + WH+RLGHP +L +S ++SV + F C
Sbjct: 424 -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 466
Query: 716 ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
C ++K +++P S S P E +++D+W L S + Y++ VD T+YTW++P
Sbjct: 467 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 525
Query: 776 LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
LK+KS TFI F+ ++E +F ++ + +D GGEF L +F + GI H + PHT
Sbjct: 526 LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 585
Query: 836 QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
NG ERKHRHIVETGL LLSHAS+P +W +AF A YLINR+ T LQ SP+ KL+G
Sbjct: 586 HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 645
Query: 896 QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
P++ L+VFG AC+P+LRPYN +KL S++CVF+GYS+ Y CL Q+ R+YIS+
Sbjct: 646 TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 705
Query: 955 DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
V F E+ FP+ T + SS + P +T+P + H A PP
Sbjct: 706 HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPGLPAPSGSDPHHAATPP 765
Query: 997 SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
SSP ++S SSP GPQ Q Q + T S+ + S
Sbjct: 766 SSPSAPFRNSQVSSSNRESYFSSSFPSSPEPTAPRQNGPQPKTQPTQTQTQTHSSQNTSQ 825
Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
+ P SP P P++SA S+ TS S++ PP +
Sbjct: 826 NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 885
Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
+NTH M TRAK GI+KP + +L L EP + QA+KD +W AM E A +
Sbjct: 886 QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 945
Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
N TW LVP P + T VGC+WI+ K N DGS+N+YKAR VAKGY+Q G DY+ETFSP
Sbjct: 946 GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1005
Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
V+K ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF KD+ N VCKL+
Sbjct: 1006 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1065
Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
KALYGLKQAPRAW+ L+ L+ GF S D SLF + +YMLVYVDDI+ITG
Sbjct: 1066 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1125
Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
+L+ L F++K +L YFLG++ + G L L+Q +YI DLL + NM+ A
Sbjct: 1126 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1184
Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
++TPM KLS G+ L DPTEYR +VG+LQY TRP+IS+AVN++ QFM P EE
Sbjct: 1185 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1244
Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
H +A+KRILRYL GT HGI L+ L L AY DADW D DD ST+G V+LG+
Sbjct: 1245 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1301
Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
+ ISW++KKQ V RSSTEAEYRS+ANT++E+ W+ SLLTEL I T P +YCDN+
Sbjct: 1302 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1361
Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
L NP+ H+R KH+ +D F+R +VQ +L V HV + Q AD TK LS T F
Sbjct: 1362 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1421
Query: 1596 KLNV 1599
K+ V
Sbjct: 1422 KIGV 1425
Score = 62.0 bits (149), Expect = 2e-07
Identities = 29/84 (34%), Positives = 53/84 (62%)
Query: 133 TQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMT 192
TQLR +LK TKGTKT +++Q + T + LA +G+P+ + +E + + L EEY ++
Sbjct: 91 TQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVID 150
Query: 193 VIYNQTTYFTISEVEAMVISHEAR 216
I + T T++E+ +++HE++
Sbjct: 151 QIAAKDTPPTLTEIHERLLNHESK 174
>dbj|BAA78425.1| polyprotein [Arabidopsis thaliana]
Length = 1447
Score = 829 bits (2141), Expect = 0.0
Identities = 501/1213 (41%), Positives = 674/1213 (55%), Gaps = 148/1213 (12%)
Query: 467 PQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSI 526
P+A LA + S+ +W DSGATHH+T++ H P + + ++V +G +PI
Sbjct: 297 PRANLALGSPYSSN--SWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVVDGSTIPISHT 354
Query: 527 GSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYE 586
GS L + P L L +L VP+I KNL+SV R N V F V +T
Sbjct: 355 GSTSLSTKSRP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLASFQVKDLNTGV 411
Query: 587 LLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVS 646
LL G D+ ++ P+ SS P+S ASP
Sbjct: 412 PLLQGKTKDE---LYEWPIA-------SSQPVSLF------------ASP---------- 439
Query: 647 PIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPS 706
S + + WH+RLGHP +L +S ++SV +
Sbjct: 440 --------------------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLN 473
Query: 707 NKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDA 766
F C ++K +++P S S P E +++D+W L S + Y++ VD
Sbjct: 474 PSHKFLSCLDSLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDH 532
Query: 767 CTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIH 826
T+YTW++PLK+KS TFI F+ +VE +F ++ + +D GGEF L +F + GI H
Sbjct: 533 FTRYTWLYPLKQKSQVKETFITFKNLVENRFQTRIGTFYSDNGGEFVALREYFSQHGISH 592
Query: 827 RLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG 886
+ PHT NG ERKHRHIVETGL LLSHAS+P +W +AF A YLINR+ T LQ
Sbjct: 593 LTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQL 652
Query: 887 ASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD- 945
SP KL+G P++ L+VFG AC+P+LRPYN +KL S++CVF+GYS+ Y CL
Sbjct: 653 ESPCQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHL 712
Query: 946 QSGRIYISKDVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS--------- 991
Q+ RIYIS+ V F E+ FP+ T + SS + P +T+P +
Sbjct: 713 QTSRIYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 772
Query: 992 ---HTA-PPSSP----------------VLAASGHSSP--------GPQDSPQQQQPPSA 1023
H A PPSSP ++S SSP GPQ + Q Q +
Sbjct: 773 DPHHAATPPSSPSAPSRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 832
Query: 1024 TLSADDPSTSTPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPV 1063
T S+ + S + P SP P P++SA S+ TS S++ PP
Sbjct: 833 THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 892
Query: 1064 I-----------VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKA 1109
+ +NTH M TRAK GI+KP L+ +L L EP + QA+KD +W A
Sbjct: 893 LAQIVNNNNQAPINTHSMGTRAKAGIIKPNLKYSLAVSLAAESEPRTAIQALKDERWRNA 952
Query: 1110 MQEEYTALMNNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
M E A + N TW LVP P + T VGC+WI+ K N DGS+N+YKARLVAKGY+Q G
Sbjct: 953 MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1012
Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKD 1228
DY ETFSPV+K ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF KD
Sbjct: 1013 LDYVETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1072
Query: 1229 K-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYV 1287
+ N VCKL+KALYGLKQAPRAW+ L+ L+ GF S D SLF + +YMLVYV
Sbjct: 1073 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1132
Query: 1288 DDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLL 1347
DDI+ITG +L+ L F++K +L YFLG++ + G L L+Q +YI DLL
Sbjct: 1133 DDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLL 1191
Query: 1348 TKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
+ NM+ A ++TPM KLS G+ L DPTEYR +VG+LQY TRP+IS+AVN++
Sbjct: 1192 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1251
Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
QFM P EEH +A+KRILRYL GT HGI L+ L L AY DADW D DD ST
Sbjct: 1252 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWTGDKDDYVST 1308
Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPT 1526
+G V+LG++ ISW++KKQ V RSSTEAEYRS+ANT++E+ W+ SLLTEL I T P
Sbjct: 1309 NGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPV 1368
Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
+YCDN+ L NP+ H+R KH+ +D F+R +VQ +L V HV + Q AD TK LS
Sbjct: 1369 IYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1428
Query: 1587 PTRFLLLKDKLNV 1599
T F K+ V
Sbjct: 1429 RTAFQNFASKIGV 1441
Score = 101 bits (252), Expect = 2e-19
Identities = 51/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 30 KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
KL +N+ W +QV + ++L F+ +P + + VNP + W++QD
Sbjct: 6 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 63
Query: 90 LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
L+++ +L +S ++ P V + + Q+WE + + S TQ R +LK TKGTKT
Sbjct: 64 LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTI 123
Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
+++Q T + LA +G+P+ + +E + + L EEY ++ I + T T++E+
Sbjct: 124 DDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 183
Query: 210 VISHEAR 216
+++ E++
Sbjct: 184 LLNQESK 190
>gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T10728 probable
gag/pol polyprotein - long-staminate rice retrotransposon
retrofit
Length = 1445
Score = 825 bits (2131), Expect = 0.0
Identities = 490/1205 (40%), Positives = 681/1205 (55%), Gaps = 140/1205 (11%)
Query: 468 QAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIG 527
+ ++A + W D+GAT H+T + EQ+ +G G+ I IG
Sbjct: 305 EKLVAAATNSYGIDTNWYIDTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIG 364
Query: 528 SALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYEL 587
++ + P+ ++ L +L VP KNL+S S+ A DN+ F H+ S+ Q T ++
Sbjct: 365 HTIVHT---PSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDV 421
Query: 588 LLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVS- 646
LL G GLY P+ K + + L + + L S+ + P++ + +S
Sbjct: 422 LLEGKC-RHGLY----PIPKFFGRSTNKQALGAAKLSL-SRWHSRLGHPSLPIVKQVISR 475
Query: 647 PIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPS 706
+PC + +SVN S
Sbjct: 476 NNLPC-SVESVNQS---------------------------------------------- 488
Query: 707 NKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDA 766
C AC +K H+LP S +V P ELVF+D+WGPA ES Y+++ +D
Sbjct: 489 ------VCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-ESVGRNKYYVSFIDD 541
Query: 767 CTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTD-GGGEFKPLTSHFQKLGII 825
+K+TW++ LK KS+ F FQA+VE F K+ ++QTD GG ++ L S F ++G+I
Sbjct: 542 FSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWRGGRYQKLNSFFAQIGLI 601
Query: 826 HRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQ 885
QNGS ERKHRHIVE GL+LLS+ASMPL+FWD AF+AATYLINR+ + T+Q
Sbjct: 602 IMCHVLTLIRQNGSAERKHRHIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQ 661
Query: 886 GASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD 945
++P KL+ Q PD+ SL+VFG AC+P LRPYN++KL SK+CVF+G+S +HKG+KCLD
Sbjct: 662 NSTPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLD 721
Query: 946 -QSGRIYISKDVLFHEHRFPYP--------------ILFPTDHSSSSSAEFYPLSTIPII 990
SGR+YIS+DV+F E+ FP+ +L P+ ++ ++A + +
Sbjct: 722 VSSGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTASAGGTHVVAPV 781
Query: 991 SHTAPPSSPVLA-----ASGHSSPGPQDSPQQQQPPSATLSADD---PSTSTPAVVSPPV 1042
++T PS +++ SG +S + + +Q + +D + S P + P
Sbjct: 782 ANTPLPSDNLISNAADVTSGENSAAHEQEMENEQEIENVMHGNDVHGDAASGPVLDQPTA 841
Query: 1043 PSSSA--QSADTSASVVAAAPPVIVNTHPMQTRAKNGI---------VKPRLQPTLLLTH 1091
SS+A Q ADTS +V AA +T + A N V+P + T+L T
Sbjct: 842 DSSTAPDQGADTSDAVSGAASDAGGDTATLGAGAANSAAAGGEESQPVQPDVTGTVLATV 901
Query: 1092 L---------------------------------EPTSVKQAMKDAKWYKAMQEEYTALM 1118
EP + K+A+ D W AM+ EY AL+
Sbjct: 902 APASRPHTRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALI 961
Query: 1119 NNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPV 1178
N TW LVP + +GCKW+Y+IK DG++++YKARLVAKG+ Q G DY +TFSPV
Sbjct: 962 KNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPV 1021
Query: 1179 VKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQK 1237
VK T+R+ILS+A+SRGW L+QLDV NAFL+G LEEEVYM QPPGFE K + VCKL K
Sbjct: 1022 VKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDK 1081
Query: 1238 ALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASM 1297
ALYGLKQAPRAW+ RL + L+ GF+ASK D SLF +++LVYVDDII+ ++
Sbjct: 1082 ALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTE 1141
Query: 1298 SLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAA 1357
L L+ FALK LG L YFLG++VT +SNG ++L Q KY +DLL +VNM +
Sbjct: 1142 KATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNG-VILTQEKYANDLLKRVNMSNCKP 1200
Query: 1358 ISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHE 1415
+STP+ KL+ EGS L D +YRS+VGALQY T+TRP+I+++VNKVCQF+ P
Sbjct: 1201 VSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTT 1260
Query: 1416 EHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLG 1475
HW AVKRILRYL + G+ + + T + Y DADW DDR+ST G VFLG
Sbjct: 1261 SHWIAVKRILRYLNQCTSLGLHIHKSASTL---VHGYSDADWAGSIDDRKSTGGFAVFLG 1317
Query: 1476 YNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMST 1534
NL+SW+A+KQ V+RSSTEAEY+++ANTTAEL+WVQ+LL EL I ++CDN+
Sbjct: 1318 SNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGA 1377
Query: 1535 VLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLK 1594
L+ NP+ H RTKH+E+D FVRE+V K L + VPS Q AD FTKALS K
Sbjct: 1378 KYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFK 1437
Query: 1595 DKLNV 1599
LN+
Sbjct: 1438 HNLNL 1442
Score = 128 bits (322), Expect = 1e-27
Identities = 91/328 (27%), Positives = 145/328 (43%), Gaps = 37/328 (11%)
Query: 10 MPSSSSSSSLSQAF---SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIP--E 64
M SSSSSS + A H +S KL +N WK QV +R +L ++ P E
Sbjct: 1 MASSSSSSGAAAANLLQGHSVSEKLGKANHALWKAQVSAAVRGARLLGYLNGDIKAPDAE 60
Query: 65 KFLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFF 124
+T + K T NP F DWE D L+ +LLS+LS +L V C + + W I + +
Sbjct: 61 LSVTIDGKTTTKPNPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALY 120
Query: 125 NAKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLS 184
+ +RA++ R L N KGT +E++ +++ + + +A+ G P+ D ++ I GL+
Sbjct: 121 STGTRARAVNTRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGHPLDEEDLVQYIIAGLN 180
Query: 185 EEYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSS 244
E++S +++ + N++ T+ E+ + +++ E D R A F+A
Sbjct: 181 EDFSPIVSNLCNKSDPITVGELYSQLVNFETLLDLYRS---TGQGGAAFVANRGRGGGGG 237
Query: 245 TAPAPPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGR 304
+ AP G R ++ GG GR
Sbjct: 238 GRGNNNNSGGGGGRSAP----------------------------GGRGSGSQGRGGRGR 269
Query: 305 GRGRGRGRNVQCTYCSKWGHDAASCWSR 332
G G G+ R C C K GH AA CW R
Sbjct: 270 GTG-GQDRRPTCQVCFKRGHTAADCWYR 296
>ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|50080247|gb|AAT69582.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1256
Score = 767 bits (1981), Expect = 0.0
Identities = 420/913 (46%), Positives = 562/913 (61%), Gaps = 64/913 (7%)
Query: 743 ADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLK 802
AD+WGPA + G Y+++ +DA +++TW++ LK KS+ F FQ +VE F K+
Sbjct: 349 ADVWGPAPVAGG-GKKYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKII 407
Query: 803 SVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPL 862
S+QTD GGE++ L + F K+GI H ++CPHTH QNGS ERKHRHIVE GL+LL+HAS+PL
Sbjct: 408 SMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPL 467
Query: 863 QFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKL 922
+FWD A+ + YLINRM T L +SP L+ Q PD+++L+ FG AC+P LRPYNS+K+
Sbjct: 468 KFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKM 527
Query: 923 SLHSKECVFIGYSINHKGYKCLDQS-GRIYISKDVLFHEHRFPY---------------- 965
SK C F+GYS HKG++CLD S GRIYIS+DV+F E FP+
Sbjct: 528 HFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFAELNPNAGTNLRKEVN 587
Query: 966 ----PILFPTDHSSSSSAEFYPLSTIPIISHTAP-------------------------- 995
+L P D + +YP + +++ P
Sbjct: 588 LLPADMLNPGDVQLNDHVNYYPTAPANMVAAENPVENTEENLASTRDDAADSGGSDTGTI 647
Query: 996 -PSSPVLAASGH--SSPGPQDSPQQQQPPSATLS-ADDPSTSTPAVVSPPVPSSSAQSAD 1051
+ P A+G ++P DS + SA+ S A S +T + P P Q+
Sbjct: 648 SNADPADDAAGDMTANPNLNDSSTHESSISASASPASQSSVATAPEATLPNPQQHQQALR 707
Query: 1052 TSASVVAAAPPVIVNTHPMQTRAKNGIVKPR-LQPTLLLTHLEPTSVKQAMKDAKWYKAM 1110
+S A+ PV TH + K I R ++ L T EP + A+ D W AM
Sbjct: 708 SSTPEGEASRPV---THLQKGIRKEKIYTDRTVKYGCLTTTGEPRDLHDALHDTNWKHAM 764
Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
++TAL++N TW LVP R + KW+Y+IK DGS+++YKARLVAKG+ Q G D
Sbjct: 765 DAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 824
Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHK-DK 1229
Y +TFSPVVK T+R+ILS+A+SRGW L+QLDV NAFL+G+LEEEVYM QPPG+E K
Sbjct: 825 YEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHP 884
Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
+ VCKL KALYGLKQAPRAW+ +L + L GFQ SK D SLF Y I++LVYVDD
Sbjct: 885 DYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDD 944
Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
II+ + + L L FALK LG L YFLG++V S+G ++L Q KY++DLL +
Sbjct: 945 IIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSG-IVLTQEKYVTDLLRR 1003
Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
V M D +STP+ KL+ +EG L D + YRSVVGALQY T+TRP+I F VNKVC
Sbjct: 1004 VGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVC 1063
Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
QF+ P HW A+KRILRYLK G+ + S ++ + + Y DADW + DDRRST
Sbjct: 1064 QFLHAPTIVHWAAMKRILRYLKQCTKLGLKI---SKSKSMLVSGYSDADWAGNIDDRRST 1120
Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPT 1526
G VFLG NL+SW AKKQ+ V RSSTE+EY++LAN TAE++W+Q+LL EL +P +
Sbjct: 1121 GGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMAR 1180
Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
++CDN+ L+ NP+ H RTKH+E+D FVRE++Q K L V+ +P+ Q AD FTKALS
Sbjct: 1181 LWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALS 1240
Query: 1587 PTRFLLLKDKLNV 1599
+ K LNV
Sbjct: 1241 ARQLENFKYNLNV 1253
Score = 112 bits (280), Expect = 1e-22
Identities = 80/336 (23%), Positives = 139/336 (40%), Gaps = 59/336 (17%)
Query: 10 MPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEK--FL 67
M SSS SS+ ++ KL N+ WK QV VIR +L ++ P +
Sbjct: 1 MASSSQSSASGSLGGITVTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIII 60
Query: 68 TEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAK 127
+ +K E NP +W D + +LL+T+S +L V C + +W I F++
Sbjct: 61 KKNEKEVEVSNPAVDEWIANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSA 120
Query: 128 SRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEY 187
+RA+S + L N KG +E++ +++ + + LA+ G+PV D + I GL E++
Sbjct: 121 TRARSINTKIALTNTKKGDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDF 180
Query: 188 SALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAP 247
+++ + +++ + ++ E + ++S E R +MR++ A+ + + + +P
Sbjct: 181 EPIISSLVSKSEHVSLGEAYSQLLSFEQRM-KMRQEHSANLANR---GRGRGNPGRGRNN 236
Query: 248 APPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG 307
P +Q R GG RGRG
Sbjct: 237 KQP------------------------------------------QQQQRGHGGNSRGRG 254
Query: 308 RGRGRN-----------VQCTYCSKWGHDAASCWSR 332
RG N +C C K GH CW R
Sbjct: 255 RGNNSNQRQGGNGVDYRPKCQLCYKRGHTVIDCWYR 290
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 752 bits (1942), Expect = 0.0
Identities = 459/1182 (38%), Positives = 637/1182 (53%), Gaps = 121/1182 (10%)
Query: 471 LATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSAL 530
+ V HH W PDS A+ HVTNN + P + ++V +G LPI GS
Sbjct: 315 ITDVTDHHGHE--WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGS 372
Query: 531 LPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLT 590
+ SS + + LK++L+ P I K+L+SVS+ D F A+ ++ + T +LL+
Sbjct: 373 IASS---SGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVM 429
Query: 591 GTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVP 650
G DGLY + P + + +S S + A+ + Q A+ I+
Sbjct: 430 GR-NRDGLYSLEEPKLQVLYSTRQNSASSEVW-----HRRLGHANAEVLHQLASSKSIII 483
Query: 651 CNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSV 710
N V TV + +C+ G L LS N S P
Sbjct: 484 IN-----KVVKTVCE--ACHLGKSTR----------------LPFMLSTFNASRP----- 515
Query: 711 FSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKY 770
L ++H DLWGP+ S GF Y++ +D +++
Sbjct: 516 --------LERIH-------------------CDLWGPSPTSSVQGFRYYVVFIDHYSRF 548
Query: 771 TWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRL 828
TW +PLK KSD +TF+ FQ +VE Q GHK+K Q DGGGEF H Q GI +
Sbjct: 549 TWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNM 608
Query: 829 TCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTL-QGA 887
+CP+T QNG ERKHRHIVE GL+++ + +PL++W +F A ++IN + T++L
Sbjct: 609 SCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLDNNE 668
Query: 888 SPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQ 946
SPY KLYG+ P++ +L+VFG AC+P LR Y S K S +CVF+GY+ +KGY+CL
Sbjct: 669 SPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCLYPP 728
Query: 947 SGRIYISKDVLFHEHRFP----YPILFPTDHSSSSSAEF---------------YPLSTI 987
+GRIYIS+ V+F E+ P Y L P D + A F YP+S+I
Sbjct: 729 TGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVSSI 788
Query: 988 PIISHTAPPSSPVLAASGHSSPGPQDSPQQQQ--------PPSATLSADDPST-----ST 1034
P T ++P A+ + P D Q P T D S S
Sbjct: 789 PQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYHSP 848
Query: 1035 PAVVSPPVPSSSAQSADTSASVVAAAP-----PVIVNTHPMQTRAKNGIVKPRLQPTLLL 1089
A S P P+ S+ ++ S + AP + N H M TR K GI KP + +LL
Sbjct: 849 TADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPN-KRYVLL 907
Query: 1090 THL----EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKE 1145
TH EP +V +A+K W AMQEE TWTLVP N +G W++R K
Sbjct: 908 THKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRTKL 967
Query: 1146 NPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNN 1205
+ DGS++K KARLVAKG+ Q +G DY ET+SPVV+ TVRLIL +A W L+Q+DV N
Sbjct: 968 HADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKN 1027
Query: 1206 AFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQA 1264
AFL+G L E VYM QP GF K K + VC L K+LYGLKQ+PRAWF R L+ FGF
Sbjct: 1028 AFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFIC 1087
Query: 1265 SKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLG 1324
S DPSLF Y S+ I +L+YVDD++ITG + + L A L+ F +K +GQ+ YFLG
Sbjct: 1088 SLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLG 1147
Query: 1325 VQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRS 1384
+Q+ +G L ++Q KY DLL +M + + + TP+ + N+ DPT +RS
Sbjct: 1148 IQI-QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRS 1206
Query: 1385 VVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
+ G LQY T+TRP+I FAVN VCQ M QP + +KRILRY+KGT++ GI S +
Sbjct: 1207 LAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSS 1266
Query: 1445 ------RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEY 1498
L AY D+D+ + + RRS G C F+G N+ISW++KKQ V+RSSTEAEY
Sbjct: 1267 VVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEY 1326
Query: 1499 RSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFV 1557
RSL+ T +E+ W+ S+L E+ + P ++CDN+S V LT NP H RTKH ++D ++
Sbjct: 1327 RSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYI 1386
Query: 1558 REKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
RE+V K+L+V+H+P Q ADIFTK+L F L+ KL V
Sbjct: 1387 RERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGV 1428
Score = 104 bits (259), Expect = 3e-20
Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 72/333 (21%)
Query: 24 SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLF 81
S+ +++ L+ N+ WK Q E + L FV P + +T + +E NP F
Sbjct: 12 SNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEF 71
Query: 82 ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
W Q D ++ +WLL + + IL V+ C S+QVW + + FN S ++ +L+ L+
Sbjct: 72 YTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQT 131
Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYN---QT 198
+ K T FL+ +K I + LAS+G PV + + + +GL EY + T I N
Sbjct: 132 LEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSN 191
Query: 199 TYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQ 258
++ EV + + ++ R Q+ T+
Sbjct: 192 PSLSLDEVASKLRGYDDRL-----------------------------------QSYVTE 216
Query: 259 PAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG----RGRGRNV 314
P T++ A +V S DSGY + + + + G G+ RGRG +
Sbjct: 217 P------TISPHVAFNVTHS-------DSGYYHNNNRGKGRSNSGSGKSSFSTRGRGFHQ 263
Query: 315 Q---------------CTYCSKWGHDAASCWSR 332
Q C C K GH A CW R
Sbjct: 264 QISPTSGSQAGNSGLVCQICGKAGHHALKCWHR 296
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 726 bits (1875), Expect = 0.0
Identities = 435/1151 (37%), Positives = 625/1151 (53%), Gaps = 146/1151 (12%)
Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
W PDS AT HVT++ + +LVG+G LPI GS + SS + L
Sbjct: 322 WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSS---NGKIPL 378
Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
++L+VP+I K+L+SVS+ D F AN + T +++ TG +GLY +
Sbjct: 379 NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGP-RRNGLYVLEN 437
Query: 604 PLTKASSQPQSSSPLSSIQACLASKS--------AANKA------SPAIDLQSATVSPIV 649
Q L S + C A++ A +KA S AI + + SP+
Sbjct: 438 ---------QEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVC 488
Query: 650 -PCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNK 708
PC S + +SD SR+ HP
Sbjct: 489 EPCQMGKSSRLPFLISD-----------------SRVLHP-------------------- 511
Query: 709 SVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACT 768
L ++H DLWGP+ + S+ G Y+ VD +
Sbjct: 512 ----------LDRIH-------------------CDLWGPSPVVSNQGLKYYAIFVDDYS 542
Query: 769 KYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIH 826
+Y+W +PL KS+ + FI+FQ +VE Q K+K Q+DGGGEF L +H + GI H
Sbjct: 543 RYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHH 602
Query: 827 RLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG 886
R++CP+T QNG ERKHRH+VE GL++L H+ P +FW +F A Y+INR+ ++ L+
Sbjct: 603 RISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKN 662
Query: 887 ASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-D 945
SPY L+G+ PD+ SL+VFGSAC+P LRP NK S +CVF+GY+ +KGY+C
Sbjct: 663 LSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYP 722
Query: 946 QSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPI--------ISHTAPPS 997
+G++YIS++V+F+E P+ P + P+ IS + P+
Sbjct: 723 PTGKVYISRNVIFNESELPF---------KEKYQSLVPQYSTPLLQAWQHNKISEISVPA 773
Query: 998 SPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTS---- 1053
+PV S +P A T ++ P P+S+ + +D
Sbjct: 774 APVQLFS--------------KPIDLNTYAGSQVTEQ---LTDPEPTSNNEGSDEEVNPV 816
Query: 1054 ASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAM 1110
A +AA ++N+H M TR+K GI KP + L+ + + EP ++ AMK W +A+
Sbjct: 817 AEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAV 876
Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
EE + TW+LVP + + KW+++ K +PDGSI+K KARLVAKG+ Q +G D
Sbjct: 877 HEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVD 936
Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK- 1229
Y ETFSPVV+ T+RL+L ++ S+GWP++QLDV+NAFL+G L+E V+M QP GF K
Sbjct: 937 YLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKP 996
Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
VC+L KA+YGLKQAPRAWF L+ +GF SK DPSLF + +Y+L+YVDD
Sbjct: 997 THVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDD 1056
Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
I++TG+ SL++ L L + F++K LG YFLG+Q+ +NG L L+QT Y +D+L +
Sbjct: 1057 ILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANG-LFLHQTAYATDILQQ 1115
Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQF 1409
M D + TP+ +L +PT +RS+ G LQY TITRP+I FAVN +CQ
Sbjct: 1116 AGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQR 1173
Query: 1410 MAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSG 1469
M P + +KRILRY+KGT+ G+ P L L AY D+D + RRST+G
Sbjct: 1174 MHSPTTSDFGLLKRILRYIKGTIGMGL---PIKRNSTLTLSAYSDSDHAGCKNTRRSTTG 1230
Query: 1470 SCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VY 1528
C+ LG NLISW+AK+Q V+ SSTEAEYR+L E+ W+ LL +L IP +PT VY
Sbjct: 1231 FCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVY 1290
Query: 1529 CDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPT 1588
CDN+S V L+ NP LH R+KH + D ++RE+V + QH+ + Q AD+FTK+L
Sbjct: 1291 CDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRR 1350
Query: 1589 RFLLLKDKLNV 1599
F+ L+ KL V
Sbjct: 1351 AFVDLRSKLGV 1361
Score = 107 bits (267), Expect = 3e-21
Identities = 91/318 (28%), Positives = 133/318 (41%), Gaps = 49/318 (15%)
Query: 27 LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLFADW 84
+++KL DSN+ WK Q E ++ S KL FV P + + + +E NPL+ W
Sbjct: 17 VTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESW 76
Query: 85 EQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITK 144
D L+ +WL TLS +L +V S Q+W + FN S A+ LR L+ ++K
Sbjct: 77 FCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSK 136
Query: 145 GTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTIS 204
K S + + KTI + L+SIG+PV + +GL +Y + TVI + +
Sbjct: 137 KEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVIQSSLSKLPTP 196
Query: 205 EVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQN-SPSSSTAPAPPPPQAMWTQPAPAP 263
V+S FD K Q + ++V A N S S +P P Q
Sbjct: 197 TFND-VVSEVQGFD--SKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQ---------- 243
Query: 264 SSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRGRGR--------GRNV 314
G G R QN+ GGY RGRG + G
Sbjct: 244 -----------------------KGRG-RSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRP 279
Query: 315 QCTYCSKWGHDAASCWSR 332
C C + GH A C++R
Sbjct: 280 VCQICGRTGHTALKCYNR 297
>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1373
Score = 717 bits (1850), Expect = 0.0
Identities = 425/1035 (41%), Positives = 587/1035 (56%), Gaps = 87/1035 (8%)
Query: 637 AIDLQSATVSPIVPCNNADSVN-----VSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHD 691
A+DL++ V I CN++ + +ST + L + S LWH RLGH +
Sbjct: 353 ALDLETRNV--IARCNSSGDLYPFYPPATSTHALLAAPTS--------LWHRRLGHLGRE 402
Query: 692 VLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASL 751
L + + IS + + C AC L RLP SSS++ + F+L+ DLW + +
Sbjct: 403 ALSKLIRSSVISCTKD-DLPHLCHACQLGHHTRLPFSSSSSRASNNFDLIHCDLW-TSPI 460
Query: 752 ESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGE 811
S G+ Y+L +D C+ Y W FPL+ KSDT +T NF A V+ QFG +KSVQ D G E
Sbjct: 461 VSVSGYKYYLVILDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGRE 520
Query: 812 F--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAF 869
F P + F G+ R++CP+T QNG ER R + +LL A +P +W A
Sbjct: 521 FDNSPARTFFLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEAL 580
Query: 870 LAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKEC 929
AT L+NR+ T TL ++PYF LY P + L+VFG AC+P + +KL+ S C
Sbjct: 581 HTATLLVNRIPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLC 640
Query: 930 VFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFPTDHSSSS----------- 977
VF+GYS HKGY+CL+ S RI S+ V+F E FP+ + + +SS+
Sbjct: 641 VFLGYSSEHKGYRCLELGSNRIITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNELT 700
Query: 978 ----SAEFYPLSTIPIISHTAPPSSPVLAAS--GHSSP----GPQDSPQQQQP------- 1020
A+F T PS+P A S G SP GP+ P P
Sbjct: 701 AQPPRAKFVHAGTSSAARGAVEPSTPPPAPSSIGPRSPATLAGPEAGPHGGSPAGAATSQ 760
Query: 1021 -----PSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPP------------- 1062
P+ T + +++T AV S P ++S + S AAPP
Sbjct: 761 PGAISPARTAAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAASSTAAT 820
Query: 1063 ------------VIVNTHPMQTRAKNGIVKPRLQPTLLLTHLEPT--SVKQAMKDAKWYK 1108
+ N H M+TR K G+ +P + L L P SV++A+ D W
Sbjct: 821 GRTLATRPVSIAPVDNAHSMRTRGKAGMAQPVDRLNLHAAPLSPVPRSVREALSDPNWRA 880
Query: 1109 AMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
AMQ E+ AL+ N TW+LVP P V KWI+R K + DGS+++YKAR V +G++Q G
Sbjct: 881 AMQAEFDALLANDTWSLVPRPRGVNLVTGKWIFRHKLHSDGSLDRYKARWVLRGFTQRPG 940
Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF-EHK 1227
DY ETFSPVVKP TVR++LSLA+S+ WP+ QLDV NAFL+G L E VY +QP GF +
Sbjct: 941 VDYDETFSPVVKPATVRVVLSLALSQDWPIHQLDVKNAFLHGTLSETVYCIQPTGFADPS 1000
Query: 1228 DKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYV 1287
+LVC+L K+LYGLKQAPRAW HR LI GF ++ D SLF + + +L+YV
Sbjct: 1001 HADLVCRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLLLYV 1060
Query: 1288 DDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLL 1347
DDI++T +S SL+QQ+ A L FA+ +G L +FLG+ VT ++G L L+Q +Y D+L
Sbjct: 1061 DDIVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASG-LFLSQRQYSQDIL 1119
Query: 1348 TKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
+ M + STP+ KLS +G + D T+YRS+ GALQY T TRP+I+FAV +VC
Sbjct: 1120 ERAGMGECKPCSTPVDVHSKLSA-DGPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQVC 1178
Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
+M P E H A+KRILRY++GTL+ G+ ++ + P L+ Y DADW PD RRST
Sbjct: 1179 LYMHDPREPHLAALKRILRYIQGTLSLGLTMR---RSPPTDLVVYTDADWAGCPDTRRST 1235
Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTEL-KIPFTIPT 1526
SG VFLG NL+SW++K+Q V+RSS EAEYR++AN AE W++ LL EL + P T
Sbjct: 1236 SGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATV 1295
Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
VYCDN+S + L+ NP+ H RTKH+E+D+ FVREKV + V HVP+ Q AD+FTK L
Sbjct: 1296 VYCDNVSAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLP 1355
Query: 1587 PTRFLLLKDKLNVVD 1601
+ F + L + D
Sbjct: 1356 TSLFQEFRTSLTISD 1370
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 714 bits (1842), Expect = 0.0
Identities = 526/1630 (32%), Positives = 762/1630 (46%), Gaps = 296/1630 (18%)
Query: 5 SSSPSMPSSSSSSSLSQAFSHK----LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPP 60
S+S P + S+S+ Q + + + + LD SN+ W+ E V+ L+ VQ+PP
Sbjct: 12 STSDEEPVPAPSTSVLQTVNIRSHVPVVLDLDVSNYSQWRCSFESVLGKFGLEAHVQEPP 71
Query: 61 MIPEKFLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEI 120
+ + A+W + D + WL ++ I NV V+
Sbjct: 72 ALDLRT---------------AEWRRADHCVVNWLHNS----IAKNVFDVVY-------- 104
Query: 121 HSFFNAKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIF 180
K RA + + ++++ + FRD+
Sbjct: 105 ------KPRASAFTVWSDIEGV-----------------------------FRDN----- 124
Query: 181 DGLSEEYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNS 240
A+ +Y +T + +I++ + + + A+ KQLAD + + ++ S
Sbjct: 125 --------AVQRSVYLETEFRSINQGDMTITQYTAKL-----KQLADGLRDINMPVSEPS 171
Query: 241 P---------------SSSTAPAPPPPQAMWTQPAPAPSSTMAQPPATSVA-PSQPVDTA 284
+S A PP M + + Q A + A + T
Sbjct: 172 QVLNLLRGLNTKFRSLRASIADRNPPHTFMTARSYLLLAELQMQHDAKAEAGEALYAGTG 231
Query: 285 VDSGYGNRDEQNRNSGGYGRGRGRGRGRNVQCTYCSKWGHDAASCWSRPSGVSSNANSSA 344
SG + Q R G RG+ RGRG P G S A
Sbjct: 232 SSSGTSDTTGQPRPKG---RGKRRGRGGGAP-----------------PGGAPSTPGGGA 271
Query: 345 NSAQSGNSGSNFSVPGVNLGFSPMQFGGFPSMANFGF-----------PPYAPYNSMLPQ 393
+ G P G++P + GF F F PP+ +M Q
Sbjct: 272 GAGHDGQPR-----PPAPWGYNP--WTGFVQAWPFPFRAPGAGVLGPRPPFQAQQAMTAQ 324
Query: 394 YGSSVLSPSSMPPWSPWCIPPTPYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQF 453
+ L P+ +PP SP + ++ +Q+AG++ P
Sbjct: 325 H----LLPA-LPPASPGVHSTGAWDNSALYSALQSAGVATTTP----------------- 362
Query: 454 PRPPQQQVSTGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQL 513
S W D+GA+ H+++ PGI P +
Sbjct: 363 -------------------------PSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCI 397
Query: 514 LVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFH 573
VGNG LP+ S +P+S + L L +L+ P + KNL+SV + RDNNV F
Sbjct: 398 TVGNGAKLPVTHTASTHIPTS---STDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFD 454
Query: 574 ANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANK 633
S+ T + L P PL
Sbjct: 455 PTGFSIKDLQTQVVKLR------------------CDSPGDLYPLRL------------- 483
Query: 634 ASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVL 693
P+ SAT SP V + WH RLGHP L
Sbjct: 484 --PSPHALSATSSPSV-----------------------------EHWHLRLGHPGSASL 512
Query: 694 KQTLSLCNISVPSNKSVFSFCKACCLSKLHRLP--SSSSNTVYNTPFELVFADLWGPASL 751
+ L + NKS C AC + RLP SSSS T++ PF+LV D+W + +
Sbjct: 513 SKVLG--SFDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLF--PFQLVHTDVW-TSPI 567
Query: 752 ESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGE 811
S+ G+ Y++ +D T Y W FP++ KS+ T +F A QFG + ++QTD G E
Sbjct: 568 YSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKE 627
Query: 812 FKP--LTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAF 869
+ L S G + RL+CP++ QNG ER R I + +L H++ PL FW A
Sbjct: 628 YDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLSFWAEAL 687
Query: 870 LAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKEC 929
A +LINR PY L G P + L+VFG C+P +KLS S C
Sbjct: 688 QTAMHLINRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLAC 747
Query: 930 VFIGYSINHKGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIP 988
VFIGY +H+GY+C D S R++ S+ V F E FP+ P+ S+ + TI
Sbjct: 748 VFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDA-PSPRPSAPPPPDHGDDTIV 806
Query: 989 IISHTAPPS-SPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPA--VVSPPVPSS 1045
++ A +PV A H + P P S+T PS++ PA V PP P +
Sbjct: 807 LLPAPAQHVVTPVGTAPAHDAASPPS------PASST-----PSSAAPAHDVAPPPSPET 855
Query: 1046 SAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMK 1102
S S +A+PP H M TRA+ GI KP + + T P+SV+ A++
Sbjct: 856 S--------SPASASPP----RHAMTTRARAGISKPNPRYAMTATSTLSPTPSSVRVALR 903
Query: 1103 DAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKG 1162
D W AMQ E+ AL+ N TWTLVP P + KW+++ K + DGS++KYKAR V +G
Sbjct: 904 DPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRG 963
Query: 1163 YSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPP 1222
++Q G D+ ETFSPVVKP T+R +L+L S+ WP QLDV+NAFL+G L+E V QP
Sbjct: 964 FNQRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPT 1023
Query: 1223 GFEHKDKNL-VCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCI 1281
GFE + VC L ++LYGL+QAPRAWF R + GF S+ DPSLF
Sbjct: 1024 GFEDAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTA 1083
Query: 1282 YMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTK 1341
Y+L+YVDD+I++ +S SL+Q++ +L + F +K +G L YFLG++V ++G +L+Q+K
Sbjct: 1084 YLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSK 1142
Query: 1342 YISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISF 1401
Y +D+L + M + A++TP KLS +EG +D + YRS+ GALQY T+TRP+I++
Sbjct: 1143 YATDVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAY 1202
Query: 1402 AVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDP 1461
AV +VC M P E H +KRILRY+KGT G+ L+ + T P L A+ DADW P
Sbjct: 1203 AVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLR--ASTSP-TLTAFSDADWAGCP 1259
Query: 1462 DDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIP 1521
D RRSTSG C+FLG +LISW++K+Q+ V+RSS EAEYR +AN AE W++ LL EL
Sbjct: 1260 DTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCR 1319
Query: 1522 FTIPTV-YCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADI 1580
T+ YCDN+S+V ++ NP+ H RTKH+E+DI FVREKV L V +PS HQ AD+
Sbjct: 1320 VPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADV 1379
Query: 1581 FTKALSPTRF 1590
FTK L + F
Sbjct: 1380 FTKGLPSSMF 1389
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 709 bits (1829), Expect = 0.0
Identities = 428/1162 (36%), Positives = 625/1162 (52%), Gaps = 113/1162 (9%)
Query: 458 QQQVSTGMHPQAMLATVPA---HHSSPVT---WCPDSGATHHVTNNPGIFVDHVPSSSQE 511
Q Q + PQAM A+ H SS ++ W DSGA+HH++ + F P SS
Sbjct: 310 QFQKFLSLQPQAMSASSIGQLPHSSSGISHSEWVLDSGASHHMSPDSSSFTSVSPLSSIP 369
Query: 512 QLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFS 571
++ +G +P+ +GS + T L L + L+P + NL S+ + +
Sbjct: 370 -VMTADGTPMPLAGVGSVV-------TLHLSLPNVYLIPKLKLNLASIGQICDSGDYLVM 421
Query: 572 FHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAA 631
F + C V + +L+ TG ++GLY D
Sbjct: 422 FSGSFCCVQDLQSQKLIGTGR-RENGLYILD----------------------------- 451
Query: 632 NKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHD 691
P+V V++T DL S + LWHSRLGH
Sbjct: 452 -----------ELKVPVV---------VAATTVDLSFFRLSLSSSSFYLWHSRLGHVSSS 491
Query: 692 VLK---QTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGP 748
L+ T +L N+ S C C L+K LP + S +V ++PF+L+ +D+WGP
Sbjct: 492 RLRFLASTGALGNLKTCD----ISDCSGCKLAKFSALPFNRSTSVSSSPFDLIHSDVWGP 547
Query: 749 ASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDG 808
+ + + G Y+++ +D T+Y WV+ +K +S+ + F+A+++ Q +K + D
Sbjct: 548 SPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQHSAVIKCFRCDL 607
Query: 809 GGEFKPLTSHFQKL----GIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQF 864
GGE+ ++ F ++ G IH+ +C T QNG ERKHRHIVET +LL A + +F
Sbjct: 608 GGEYT--SNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIVETARSLLLSAFVLSEF 665
Query: 865 WDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSL 924
W A L A LIN + ++ G SP+ KLYG PD+ S +VFG F NKLS
Sbjct: 666 WGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDYSSFRVFGCTYFVLHPHVERNKLSS 725
Query: 925 HSKECVFIGYSINHKGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYP 983
S CVF+GY KGY+C D + ++Y+S V+F EH P
Sbjct: 726 RSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLEH--------------------IP 765
Query: 984 LSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVP 1043
+IP +H+ S + H P +DS P ++ + + + + P
Sbjct: 766 FFSIPSTTHSLTKSDLI-----HIDPFSEDSGNDTSPYVRSICTHNSAGTGTLLSGTPEA 820
Query: 1044 SSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL----EPTSVKQ 1099
S S+ + S+ +V P + T L ++ EP+S K+
Sbjct: 821 SFSSTAPQASSEIVDPPPRQSIRIRKSTKLPDFAYSCYSSSFTSFLAYIHCLFEPSSYKE 880
Query: 1100 AMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLV 1159
A+ D +AM EE +AL TW LVPLP ++ VGC+W+Y+IK N DGSI +YKARLV
Sbjct: 881 AILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKTNSDGSIERYKARLV 940
Query: 1160 AKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMV 1219
AKGYSQ G DY ETF+P+ K T+R ++++A R W + QLDV NAFLNG L+EEVYM
Sbjct: 941 AKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVKNAFLNGDLQEEVYMA 1000
Query: 1220 QPPGFEHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQG 1279
PPG H D VCKL+KALYGLKQAPRAWF + V+ GF +S D +LF + G
Sbjct: 1001 PPPGISH-DSGYVCKLKKALYGLKQAPRAWFEKFSIVISSLGFVSSSHDSALFIKCTDAG 1059
Query: 1280 CIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQ 1339
I + +YVDD+IITG + I L +L F +K LG L YFLG++V + G LL+Q
Sbjct: 1060 RIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGIEVAYSPRG-YLLSQ 1118
Query: 1340 TKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEI 1399
+KY++++L + + D + TP++ + S ++G L DPT YR++VG+L Y TIT P+I
Sbjct: 1119 SKYVANILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIVGSLVYLTITHPDI 1178
Query: 1400 SFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGS 1459
++AV+ V QF+A P HW AV RILRYL+GT+ +LL S T L L AY DAD GS
Sbjct: 1179 AYAVHVVSQFVASPTTIHWAAVLRILRYLRGTVFQSLLL---SSTSSLELRAYSDADHGS 1235
Query: 1460 DPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELK 1519
DP DR+S +G C+FLG +LISW +KKQS+V++SSTEAEY ++A+TT E++W + LL ++
Sbjct: 1236 DPTDRKSVTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKEIVWSRWLLADMG 1295
Query: 1520 IPFT-IPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKA 1578
I F+ + +YCDN S++ + HN + H RTKH+E+D R ++ ++ + VPS Q A
Sbjct: 1296 ISFSHLTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIALPFVPSSLQIA 1355
Query: 1579 DIFTKALSPTRFLLLKDKLNVV 1600
D FTKA S +RF L KL+++
Sbjct: 1356 DFFTKAHSISRFCFLVGKLSML 1377
Score = 52.4 bits (124), Expect = 1e-04
Identities = 40/220 (18%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 27 LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFAD-WE 85
+S++LD N+ W + ++ K+ +V ++P K TE + + D WE
Sbjct: 12 VSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVVP--------KNTEEGDTVSIDTWE 63
Query: 86 QQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKG 145
++ + TW+ + + +I + + + +VW+ + F + A+ QL N+++ + +
Sbjct: 64 ANNAKIITWINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQK 123
Query: 146 TKTASEFLQRIKTIVNTLA--------SIGEPVTFRD--HLEAIFDGLSEEYSALMTVIY 195
+ EF + + + LA + G + R+ L L ++ L I
Sbjct: 124 NMSIQEFYSAMTDLWDQLALTESVELKACGAYIERREQQRLVQFLTALRSDFEGLRGSIL 183
Query: 196 NQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLA 235
+++ ++ V + +++ E R +K + ++ LA
Sbjct: 184 HRSPLPSVDSVVSELLAEEIRLQSYSEKGILSASNPSVLA 223
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 708 bits (1828), Expect = 0.0
Identities = 426/1085 (39%), Positives = 609/1085 (55%), Gaps = 82/1085 (7%)
Query: 574 ANHCSVHHQDTYELLLTGTVGDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLA 626
A+ + + TYE G+D + DG P+T S SSS PL+ + C A
Sbjct: 336 ASTSGLQNATTYE-------GNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPA 388
Query: 627 SKSA------------------ANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVS 668
+ + ANK IDL + V P NN + +S L S
Sbjct: 389 IQKSLLSVSKLCDDYPCGVYFDANKVC-IIDLTTQKVVSKGPRNNGLYMLENSEFVALYS 447
Query: 669 CNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPS 727
N S+ + WH RLGH + +L+Q L+ I V NKS S C+ C + K RL
Sbjct: 448 -NRQCAASM-ETWHHRLGHSNSKILQQLLTRKEIQV--NKSRTSPVCEPCQMGKSTRLQF 503
Query: 728 SSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFI 787
SS+ P + V DLWGP+ + S+ GF Y+ VD ++++W FPL+ KS + FI
Sbjct: 504 FSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFI 563
Query: 788 NFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHR 845
+Q +VE Q G K+K Q+DGGGEF L HF++ GI HR++CP+T QNG ERKHR
Sbjct: 564 AYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHR 623
Query: 846 HIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKV 905
H+VE GL++L H+ PL+FW AF A YL N + ++ L+ SPY L+ Q D+ L+V
Sbjct: 624 HLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRV 683
Query: 906 FGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFP 964
FG+AC+P LRP NK S +CVF+GY +KGY+CL +G++YIS+ V+F E +FP
Sbjct: 684 FGTACYPCLRPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFP 743
Query: 965 YPILFPTDHSSSSSAEFYPLSTIPIISHT--APPSSPVLAASGHSSPGPQDSPQQQQPPS 1022
+ S Y + + HT PPS P S Q +Q P +
Sbjct: 744 F------KEKYHSLVPKYQTTLLQAWQHTDLTPPSVP--------SSQLQPLARQMTPMA 789
Query: 1023 ATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPV--------------IVNTH 1068
+ + + T V+ + +SS + +++ PV + N H
Sbjct: 790 TSENQPMMNYETEEAVNVNMETSSDEETESNDEFDHEVAPVLNDQNEDNALGQGSLENLH 849
Query: 1069 PMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTL 1125
PM TR+K+GI KP + L+++ EP ++ AMK W A+ +E + TW+L
Sbjct: 850 PMITRSKDGIQKPNPRYALIVSKSSFDEPKTITTAMKHPSWNAAVMDEIDRIHMLNTWSL 909
Query: 1126 VPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVR 1185
VP + + KW+++ K PDG+I+K KARLVAKG+ Q +G DY ETFSPVV+ T+R
Sbjct: 910 VPATEDMNILTSKWVFKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIR 969
Query: 1186 LILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQ 1244
L+L A + WPL+QLDV+NAFL+G L+E V+M QP GF +K N VC+L KALYGLKQ
Sbjct: 970 LVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQ 1029
Query: 1245 APRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLT 1304
APRAWF L+ FGF+ S DPSLF + + + +L+YVDDI++TG+ L+ +L
Sbjct: 1030 APRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLL 1089
Query: 1305 AQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQC 1364
L++ F++K LG YFLG+++ +NG L L+Q Y SD+L + M + + TP+
Sbjct: 1090 QALNNRFSMKDLGPPRYFLGIEIESYNNG-LFLHQHAYASDILHQAGMTECNPMPTPLP- 1147
Query: 1365 GVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRI 1424
L ++PT +RS+ G LQY TITRP+I +AVN +CQ M P + +KRI
Sbjct: 1148 -QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRI 1206
Query: 1425 LRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAK 1484
LRY+KGT+ G+ P L +CD+D+ D RRST+G C+ LG LISW+AK
Sbjct: 1207 LRYVKGTINMGL---PIRKHHNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAK 1263
Query: 1485 KQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPIL 1543
+Q ++ SSTEAEYR+L++T E+ W+ SLL +L I PT V+CDN+S V L+ NP L
Sbjct: 1264 RQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPAL 1323
Query: 1544 HTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVDKQ 1603
H R+KH + D ++RE+V + QH+P+ Q AD+FTK+L F+ L+ KL V
Sbjct: 1324 HKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGVSASP 1383
Query: 1604 VLLSP 1608
V +P
Sbjct: 1384 VSPTP 1388
Score = 117 bits (294), Expect = 2e-24
Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 47/320 (14%)
Query: 24 SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQD--PPMIPEKFLTEEDKITENVNPLF 81
S +++KL+DSN+ WK Q E ++ S KL FV P + + +D +E NP +
Sbjct: 14 SSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQY 73
Query: 82 ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
DW D L+ +WL TLS +L +V S Q+W + FN S A+ LR L+
Sbjct: 74 EDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQL 133
Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYF 201
+TK K+ S + + K I ++L+SIG+PV + +GL EY + TVI + +
Sbjct: 134 LTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVIQSSLSKL 193
Query: 202 TISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQPAP 261
VIS FD K Q D T +V A N+ S++ AP
Sbjct: 194 PAPTFND-VISEVQGFD--SKLQSYDDTVSVNPHLAFNTERSNSG-------------AP 237
Query: 262 APSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRGRGR--------GR 312
+S +S R QNR GGY RGRG + G+
Sbjct: 238 QYNS--------------------NSRGRGRSGQNRGRGGYSTRGRGFSQHQSASPSSGQ 277
Query: 313 NVQCTYCSKWGHDAASCWSR 332
C C + GH A C++R
Sbjct: 278 RPVCQICGRIGHTAIKCYNR 297
Score = 57.4 bits (137), Expect = 4e-06
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
W PDS AT H+T + + + +LVG+G LPI +GS + SS ++ L
Sbjct: 324 WYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISSS---KGTIPL 380
Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFD 602
++L+ P+I K+L+SVS+ D F AN + T +++ G ++GLY +
Sbjct: 381 NEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGP-RNNGLYMLE 438
>emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|3269282|emb|CAA19715.1|
putative protein [Arabidopsis thaliana]
gi|7444417|pir||T05745 hypothetical protein M4I22.20 -
Arabidopsis thaliana
Length = 1318
Score = 708 bits (1827), Expect = 0.0
Identities = 398/954 (41%), Positives = 539/954 (55%), Gaps = 79/954 (8%)
Query: 679 DLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPF 738
++WH RLGHPH +L+ P
Sbjct: 310 EVWHRRLGHPHPQILQ------------------------------------------PL 327
Query: 739 ELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFG 798
E V DLWGP ++ S GF Y+ +D ++++W++PLK KSD F+ F +VE Q
Sbjct: 328 ERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLS 387
Query: 799 HKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLS 856
K+ Q DGGGEF H Q GI +L+CPHT QNG ERKHRH+VE GL++L
Sbjct: 388 QKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLF 447
Query: 857 HASMPLQFWDHAFLAATYLINRMSTTTL-QGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
+ +P +FW AF A +LIN + T+ L + SPY KLY + PD+ SL+ FGSACFP LR
Sbjct: 448 QSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLR 507
Query: 916 PYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPY--------- 965
Y NK + S +CVF+GY+ +KGY+CL +GR+YIS+ V+F E +P+
Sbjct: 508 DYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHP 567
Query: 966 ----PILF--------PTDHSSSSSAEFYPLST---IPIISHTAPPSSPVLAASGHSSPG 1010
P+L P +S+S + PL T P + P P L S
Sbjct: 568 QPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHA 627
Query: 1011 PQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPM 1070
+ QQ + + D S S S ++ ASV N HPM
Sbjct: 628 SNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPM 687
Query: 1071 QTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVP 1127
TRAK GI KP + L +++ EP +V A+K W AM EE TW+LVP
Sbjct: 688 VTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVP 747
Query: 1128 LPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLI 1187
++ +G KW++R K + DG++NK KAR+VAKG+ Q +G DY ET+SPVV+ TVRL+
Sbjct: 748 YKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLV 807
Query: 1188 LSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAP 1246
L LA + W ++Q+DV NAFL+G L+E VYM QP GF K + VC L K++YGLKQ+P
Sbjct: 808 LHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSP 867
Query: 1247 RAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQ 1306
RAWF + L+ FGF SK DPSLF Y + I +L+YVDD++ITG S + L A
Sbjct: 868 RAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAA 927
Query: 1307 LHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGV 1366
L+ F + +GQL YFLG+QV NG L ++Q KY DLL +M + TP+ +
Sbjct: 928 LNKEFRMTDMGQLHYFLGIQVQRQQNG-LFMSQQKYAEDLLIAASMEHCTPLPTPLPVQL 986
Query: 1367 KLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILR 1426
++ DPT +RS+ G LQY T+TRP+I FAVN VCQ M QP + +KRILR
Sbjct: 987 DRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILR 1046
Query: 1427 YLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQ 1486
Y+KGT+T GI S P L AY D+DWG+ RRS G C F+G NL+SW++KK
Sbjct: 1047 YIKGTITMGI---SYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKH 1103
Query: 1487 SLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHT 1545
V+RSSTEAEY+SL++ +E+LW+ +LL EL+IP P ++CDN+S V LT NP H
Sbjct: 1104 PTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHA 1163
Query: 1546 RTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
RTKH ++D FVRE+V K+L+V+H+P Q ADIFTK+L F+ L+ KL V
Sbjct: 1164 RTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGV 1217
Score = 69.7 bits (169), Expect = 8e-10
Identities = 44/116 (37%), Positives = 64/116 (54%), Gaps = 4/116 (3%)
Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
W PDS AT HVTN+P P + ++V +G LPI GS L SS + ++ L
Sbjct: 177 WLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASS---SGTVPL 233
Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLY 599
+L+ PSITK+L+S+S+ +D F + V+ + T +LLL G+ DGLY
Sbjct: 234 TDVLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGS-NRDGLY 288
Score = 50.4 bits (119), Expect = 5e-04
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 134 QLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTV 193
+L+ L+N++K KT +L +K I + LAS+G PVT + + A +GL EY + T
Sbjct: 49 ELQRRLQNVSKRDKTMDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTT 108
Query: 194 IYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLA 235
I N +E VI +D + L +TT + ++A
Sbjct: 109 IENSMDTQPGPSLE-NVIPKLTGYDDRLQGYLEETTISPYVA 149
>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 707 bits (1824), Expect = 0.0
Identities = 396/955 (41%), Positives = 566/955 (58%), Gaps = 54/955 (5%)
Query: 679 DLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPSSSSNTVYNTP 737
++WH RLGH + +L+Q S IS NKS S C+ C + K +L SSN+
Sbjct: 457 EIWHHRLGHSNSRILQQLKSSKEISF--NKSRMSPVCEPCQMGKSSKLQFFSSNSRELDL 514
Query: 738 FELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQF 797
+ DLWGP+ + S GF Y++ VD ++Y+W +PLK KSD A F+ FQ +VE QF
Sbjct: 515 LGRIHCDLWGPSPVVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQF 574
Query: 798 GHKLKSVQTDGGGEFKP--LTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALL 855
K+K Q+DGGGEF + H GI HR++CP+T QNG ERKHRH VE GL+++
Sbjct: 575 NTKIKVFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMM 634
Query: 856 SHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
H+ PLQFW AF A++L N + + +L SP L Q P++ L+VFG+AC+P LR
Sbjct: 635 FHSHTPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLR 694
Query: 916 PYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFP----YPILFP 970
P +K S +CVF+GY+ +KGY+CL +GR+YIS+ V+F E FP Y L P
Sbjct: 695 PLGEHKFEPRSLQCVFLGYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPFKQKYQFLVP 754
Query: 971 TDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDP 1030
SS SA S+IP + P + G +S +PPS +
Sbjct: 755 QYESSLLSAW---QSSIPQADQSLIPQA---------EEGKIES--LAKPPSIQKNTIQD 800
Query: 1031 STSTPAVVSPPV-------------------PSSSAQSADTSASVVAAAPPVIVNTHPMQ 1071
+T+ PA+++ V + Q+ + +V NTHPM
Sbjct: 801 TTTQPAILTEGVLNEEEEEDSFEETETESLNEETHTQNDEAEVTVEEEVQQEPENTHPMT 860
Query: 1072 TRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPL 1128
TR+K GI K + LL + EP S+ +A+ W A+ +E + TW+LV
Sbjct: 861 TRSKAGIHKSNTRYALLTSKFSVEEPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQP 920
Query: 1129 PANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLIL 1188
+ +GC+W+++ K PDGS++K KARLVAKG+ Q +G DY ETFSPVV+ T+RL+L
Sbjct: 921 TEDMNILGCRWVFKTKLKPDGSVDKLKARLVAKGFHQEEGLDYLETFSPVVRTATIRLVL 980
Query: 1189 SLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPR 1247
+A ++GW ++QLDV+NAFL+G L+E VYM+QPPGF ++K + VC+L KALYGLKQAPR
Sbjct: 981 DVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPR 1040
Query: 1248 AWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQL 1307
AWF + L+ FGF SK DPSLFTY+ + + +L+YVDDI++TG+ +L+Q+L L
Sbjct: 1041 AWFDTISNYLLDFGFSCSKSDPSLFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSL 1100
Query: 1308 HSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVK 1367
+ F++K LG YFLGV++ G L L+QT Y D+L + M + ++ TP+ ++
Sbjct: 1101 NKRFSMKDLGAPSYFLGVEIESSPEG-LFLHQTAYAKDILHQAAMSNCNSMPTPLPQHIE 1159
Query: 1368 LSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRY 1427
++ +PT +RS+ G LQY TITRP+I FAVN +CQ M P + +KRILRY
Sbjct: 1160 NLNSD--LFPEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTADFGLLKRILRY 1217
Query: 1428 LKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQS 1487
+KGT+ G+ ++ + L L+AY D+DW + RRST+G C LG NLISW+AK+Q
Sbjct: 1218 VKGTIHLGLHIK---KNQNLSLVAYSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQE 1274
Query: 1488 LVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTR 1546
V++SSTEAEYR+L EL W+ LL ++ + T PT V CDN+S V L+ NP LH R
Sbjct: 1275 TVSKSSTEAEYRALTAVAQELTWLSFLLRDIGVTQTHPTLVKCDNLSAVYLSANPALHNR 1334
Query: 1547 TKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVD 1601
+KH + D ++RE+V + +H+ + Q ADIFTK L F+ L+ KL V +
Sbjct: 1335 SKHFDTDYHYIREQVALGLVETKHISATLQLADIFTKPLPRRAFIDLRIKLGVAE 1389
Score = 100 bits (249), Expect = 4e-19
Identities = 88/322 (27%), Positives = 128/322 (39%), Gaps = 50/322 (15%)
Query: 24 SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLT--EEDKITENVNPLF 81
S +++KL+DSN+ WK Q E ++ HKL FV P + L D + NP +
Sbjct: 14 SSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANPQY 73
Query: 82 ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
W D L+ +WL TLS +L V S +W + FN S A+ LR L+
Sbjct: 74 ESWFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTLQL 133
Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYF 201
++K KT S + + + + L+SIG+PV + +GL EY + TVI
Sbjct: 134 LSKKDKTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVI------- 186
Query: 202 TISEVEAMVISHEARFDRMRKKQLADTTSAV--FLAQAQNSPSSSTAPAPPPPQAMWTQP 259
++ ++ D S V F + Q+ S TA P A TQ
Sbjct: 187 ------------QSSLSKISPPTFRDVISEVKGFDVKLQSYEESVTA---NPHMAFNTQR 231
Query: 260 APAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRG--------RGR 310
+ + + GYG QNR GY RGRG
Sbjct: 232 SEYTDNYTSGNRGKG-----------RGGYG----QNRGRSGYSTRGRGFSQHQTNSNNT 276
Query: 311 GRNVQCTYCSKWGHDAASCWSR 332
G C C + GH A C++R
Sbjct: 277 GERPVCQICGRTGHTALKCYNR 298
Score = 62.0 bits (149), Expect = 2e-07
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 479 SSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPT 538
SS W PDS AT HVT++ P + + +LVG+G LPI +GS + S +
Sbjct: 320 SSGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGSTTISSD---S 376
Query: 539 ASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGL 598
+L L ++L+ P I K+L+SVS+ D F AN + +T +++ G +GL
Sbjct: 377 GTLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKVCIIDINTQKVVSKGP-RSNGL 435
Query: 599 YYFD 602
Y +
Sbjct: 436 YVLE 439
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 699 bits (1805), Expect = 0.0
Identities = 421/1003 (41%), Positives = 567/1003 (55%), Gaps = 63/1003 (6%)
Query: 639 DLQSATVSPIVPCNNADSVNV------SSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDV 692
DLQ+ V I+ CN+ + SS L++ +S LWH RLGHP
Sbjct: 86 DLQTRRV--ILRCNSRGELYTLPAATPSSAAHGLLATSS-------TLWHCRLGHPGPAA 136
Query: 693 LKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLE 752
+ ++ +IS NK S C AC L K RLP +S++ + PFELV D+W + +
Sbjct: 137 IHGLRNIASISC--NKIDTSLCHACQLGKHTRLPFHNSSSRTSVPFELVHCDVW-TSPVM 193
Query: 753 SSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF 812
S+ GF Y+L +D + + W F L+ KSD + F V QFG LKS Q D G EF
Sbjct: 194 STSGFKYYLVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREF 253
Query: 813 --KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFL 870
+T+ G RL+CP+T QNG ER R I + LL ASMP +W A
Sbjct: 254 VNTAITTFLASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALA 313
Query: 871 AATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECV 930
ATYL+NR ++++ + P+ L+ PDF L+VFG C+P L +KLS S CV
Sbjct: 314 TATYLLNRRPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACV 373
Query: 931 FIGYSINHKGYKCLDQSG-RIYISKDVLFHEHRFPYPI--------------LFPTDHSS 975
F+GY +HKGY+CLD S RI IS+ V+F E +FP+ L P D S
Sbjct: 374 FLGYPTSHKGYRCLDLSTHRIIISRHVVFDESQFPFAATPPAASSFDFLLQGLSPADAPS 433
Query: 976 SSSAEFYPLSTIPIISHTAPPSS-PVLAASGHSSPGPQDSPQQQQPPSATLSAD--DPST 1032
+ PL+ P P P S + ++P P T SAD P +
Sbjct: 434 LEVEQPRPLTVAPSTEVEQPYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGS 493
Query: 1033 STPA--VVSP--------PVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPR 1082
+T A +VSP PV + S+ + VAA P H M TR+++G ++P
Sbjct: 494 ATRASTIVSPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQP-----HSMVTRSQSGSLRPV 548
Query: 1083 LQPTLLLTHLE----PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCK 1138
+ T T P + A+ D W AM +EY L++NGTW LV P K
Sbjct: 549 DRLTYTATQAAASPVPANYHSALADPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGK 608
Query: 1139 WIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPL 1198
WI++ K + DGS+ +YKAR V +GYSQ G DY ETFSPVVK T+R++LS+A SR WP+
Sbjct: 609 WIFKHKFHSDGSLARYKARWVVRGYSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPI 668
Query: 1199 QQLDVNNAFLNGVLEEEVYMVQPPGF-EHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVL 1257
QLDV NAFL+G L+E VY QP GF + + VC LQK+LYGLKQAPRAW+ R +
Sbjct: 669 HQLDVKNAFLHGHLKETVYCQQPSGFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYI 728
Query: 1258 IRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLG 1317
+ GF S D SLF Y Y+L+YVDDII+T ++ +L+QQLTA+LHS FA+ LG
Sbjct: 729 RQMGFMPSASDTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLG 788
Query: 1318 QLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALK 1377
L +FLG+ V +G L L+Q +Y DLL + M + + STP+ KLS +G +
Sbjct: 789 DLHFFLGISVKRSPDG-LFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVA 847
Query: 1378 DPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGIL 1437
DP+ YRS+ GALQY T+TRP++++AV +VC FM P E H VKRILRY+KG+L+ G+
Sbjct: 848 DPSAYRSIAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLH 907
Query: 1438 LQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAE 1497
+ + L AY DADW P+ RRSTSG CV+LG NL+SW++K+Q+ V+RSS EAE
Sbjct: 908 IGSGPIQ---SLTAYSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAE 964
Query: 1498 YRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFF 1556
YR++A+ AE W++ LL EL +P T VYCDN+S V +T NP+ H RTKH+E+DI F
Sbjct: 965 YRAVAHAVAECCWLRQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHF 1024
Query: 1557 VREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
VREKV + V +VPS HQ ADI TK L F + L V
Sbjct: 1025 VREKVALGQVRVLYVPSSHQFADIMTKGLPVQLFTDFRSSLCV 1067
>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301693|pir||F84480 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1402
Score = 691 bits (1783), Expect = 0.0
Identities = 420/1036 (40%), Positives = 569/1036 (54%), Gaps = 104/1036 (10%)
Query: 594 GDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLASKSAANKASPAIDLQSATVS 646
G D + DG P+T S +SS PL+ + C P+I +VS
Sbjct: 357 GSDAVMVADGNFLPITHTGSTNLASSSGNVPLTDVLVC-----------PSITKSLLSVS 405
Query: 647 PIV---PCN---NADSVNVS-----------STVSDLVSCNSGSGISVY----------D 679
+ PC ++D V ++ ST L S + +
Sbjct: 406 KLTQDYPCTVEFDSDGVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDE 465
Query: 680 LWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFE 739
+WH RLGHPH VL+Q + +IS+ NK+ S C+AC L K RLP SS+ N P E
Sbjct: 466 VWHRRLGHPHPQVLQQLVKTNSISI--NKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLE 523
Query: 740 LVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGH 799
V DLWGP+ + S GF Y+ +D ++++W++PLK KSD F+ F +VE Q H
Sbjct: 524 RVHCDLWGPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNH 583
Query: 800 KLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSH 857
K+ Q DGGGEF H Q GI ++ PHT QNG ERKHRH+VE GL++L
Sbjct: 584 KISVFQCDGGGEFVNHKFLQHLQNHGIQQHISYPHTPQQNGLAERKHRHLVELGLSMLFQ 643
Query: 858 ASMPLQFWDHAFLAATYLINRMSTTTLQGA-SPYFKLYGQYPDFKSLKVFGSACFPFLRP 916
+ +PL+FW AF A +LIN + T+ ++ A SPY KL+ PD+ +L+ FG ACFP +R
Sbjct: 644 SKVPLKFWVEAFFTANFLINLLPTSAVEDAISPYEKLHQTTPDYTALRSFGCACFPTMRD 703
Query: 917 YNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPYPILFPTDHSS 975
Y NK S +CVF+GY+ +KGY+CL +GR+YIS+ V+F E +P+ + HS
Sbjct: 704 YAMNKFDPRSLKCVFLGYNDKYKGYRCLYPPTGRVYISRHVIFDETAYPFSHHYKHLHSQ 763
Query: 976 SSSA---------EFYPLSTIPIISHTAPPS------SPVLAASGHSSPGPQDSPQQQQP 1020
++ E P +S PP +P L + P P+ SPQ Q
Sbjct: 764 PTTPLLAAWFKGFESSVSQAPPKVSPAQPPQRKATLPTPPLFTAADFPPLPRRSPQLSQN 823
Query: 1021 PSATLSADDPSTST------PAVV-----------SPPVPSSSAQSA----DTSASVVAA 1059
+A L PST+T PAVV S + SS S DT ++AA
Sbjct: 824 SAAAL-VSQPSTTTINSTHPPAVVNESSERTINFDSASIGDSSHSSQLLVDDTVEDLMAA 882
Query: 1060 ------APPVIVNTHPMQTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAM 1110
APP NTHPM TRAK GI KP + L +T+ EP +V A+K W AM
Sbjct: 883 PVPTQQAPPP-TNTHPMITRAKVGITKPNPRYVFLSHKVTYPEPKTVTAALKHPGWTGAM 941
Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
EE TW+LVP N +G KW++R K + DG++NK KAR+VAK + Q +G
Sbjct: 942 TEEMGNCSETNTWSLVPYTPNMHVLGSKWVFRTKLHADGTLNKLKARIVAKCFLQEEGIG 1001
Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK- 1229
Y ET+SPVV+ TV+L+L LA + W L+Q+DV NAFL+G L E VYM QP GF K K
Sbjct: 1002 YLETYSPVVRTPTVQLVLHLATALNWELKQMDVKNAFLHGDLNETVYMTQPAGFVDKSKP 1061
Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
VC L K++YGLKQ+PRAWF + L+ FGF SK DPSLF Y + I +L+YVDD
Sbjct: 1062 THVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDD 1121
Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
++ITG S + L A L+ F + +GQL YFLG+QV +G L ++Q KY DLL
Sbjct: 1122 MVITGNSSQTLSSLLAALNKEFRMTDMGQLHYFLGIQVQRNQHG-LFMSQQKYAEDLLVA 1180
Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQF 1409
M + + TP+ + ++ DPT +RS+ G LQY T+TRP+I FAVN VCQ
Sbjct: 1181 SAMENCTPLPTPLPVQLDRVPHQEEPFTDPTYFRSIAGKLQYLTLTRPDIHFAVNFVCQK 1240
Query: 1410 MAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSG 1469
M QP + +KRILRY+KGT+T GI + P L AY D+DWG+ RRS G
Sbjct: 1241 MHQPTMSDFHLLKRILRYIKGTITMGI---SYNQNSPTLLQAYSDSDWGNCKLTRRSVGG 1297
Query: 1470 SCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVY 1528
C F+ NL+SW++KK V+RSSTEAEYR+L++ +E+LW+ +LL EL IP P ++
Sbjct: 1298 LCTFMATNLVSWSSKKHPTVSRSSTEAEYRTLSDAASEILWLSTLLRELGIPLPDTPELF 1357
Query: 1529 CDNMSTVLLTHNPILH 1544
CDN+S V T NP H
Sbjct: 1358 CDNLSAVYHTANPAFH 1373
Score = 103 bits (257), Expect = 5e-20
Identities = 84/332 (25%), Positives = 134/332 (40%), Gaps = 64/332 (19%)
Query: 24 SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEED---KITENVNPL 80
S+ +++ L N+ WK Q E + L FV P + D + + NP
Sbjct: 12 SNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPNPE 71
Query: 81 FADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELK 140
+ W + D ++ +WLL + IL V+ C S++VW + + FN S ++ +L+ L+
Sbjct: 72 YYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRRLQ 131
Query: 141 NITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTY 200
N++K K+ E+L+ +KTI + LAS+G PVT + + A +GL EY + T I N
Sbjct: 132 NVSKRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDA 191
Query: 201 FTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQPA 260
+E ++ DR++ +L + SP
Sbjct: 192 LPGPSLEDVIPKLTGYDDRLQG----------YLEETAVSPH------------------ 223
Query: 261 PAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRG----RGRG------- 309
A ++ S D + SGY N + + GR RGRG
Sbjct: 224 ----------VAFNITTS---DDSNASGYFNAYNRGKGKSNRGRNSFSTRGRGFHQQISS 270
Query: 310 ---------RGRNVQCTYCSKWGHDAASCWSR 332
G +V C C K GH A CW R
Sbjct: 271 TNSSSGSQSGGTSVVCQICGKMGHPALKCWHR 302
Score = 71.2 bits (173), Expect = 3e-10
Identities = 50/136 (36%), Positives = 75/136 (54%), Gaps = 7/136 (5%)
Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
W PDS AT HVTN+P P + ++V +G LPI GS L SS + ++ L
Sbjct: 332 WLPDSAATAHVTNSPRSLQQSQPYHGSDAVMVADGNFLPITHTGSTNLASS---SGNVPL 388
Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYF-D 602
+L+ PSITK+L+SVS+ +D F ++ ++ + T +LL+ G+ DGLY D
Sbjct: 389 TDVLVCPSITKSLLSVSKLTQDYPCTVEFDSDGVRINDKATKKLLIMGST-CDGLYCLKD 447
Query: 603 GPLTKA--SSQPQSSS 616
KA S++ QS+S
Sbjct: 448 DSQFKAFFSTRQQSAS 463
>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534632|ref|NP_921618.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 680 bits (1755), Expect = 0.0
Identities = 422/1178 (35%), Positives = 623/1178 (52%), Gaps = 125/1178 (10%)
Query: 464 GMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPI 523
G+ + ++TV S P W DSGA+ H++ + + + NG +
Sbjct: 166 GIASCSSISTVTPIASQP--WILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKV 223
Query: 524 QSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQD 583
GS P P SL VP ++ NL+SV + D N F F C V +
Sbjct: 224 THQGSISSPQFTVPNVSL-------VPKLSMNLISVGQLT-DTNCFVGFDDTSCFVQDRH 275
Query: 584 TYELLLTG--TVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQ 641
T ++ TG GLY D + S P SS+ S+ + + S
Sbjct: 276 TGAVIGTGHRQKRSCGLYILD-----SLSLPSSSTNTPSVYSPMCS-------------- 316
Query: 642 SATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCN 701
+C S + WH RLGH L ++
Sbjct: 317 -------------------------TACKS------FPQWHHRLGHLCGSRLATLINQGV 345
Query: 702 I-SVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYF 760
+ SVP + + CK C L K +LP SS + + PF+LV +D+WG + S G Y+
Sbjct: 346 LGSVPVDTTFV--CKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGGHNYY 403
Query: 761 LTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQ 820
+ VD ++YTW++ +K +S + + +F M+ QF ++ ++D GGE+ +++ F+
Sbjct: 404 VIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEY--MSNAFR 461
Query: 821 KL----GIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLI 876
+ G + +L+CP H QNG ERKHRHI+ET LL + +P FW A A YLI
Sbjct: 462 EFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTAVYLI 521
Query: 877 NRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSI 936
N +++LQG SP L+G P + L+VFG C+ L P KL+ S ECVF+GYS+
Sbjct: 522 NMQPSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSL 581
Query: 937 NHKGYKCLDQSGR-IYISKDVLFHEHRFPYPILFPTDHSSSS---SAEFYPLSTIPIISH 992
HKGY+C D S R I IS+DV F E++ P + + + SS S F L IP S
Sbjct: 582 EHKGYRCYDPSARRIRISRDVTFDENK---PFFYSSTNQPSSPENSISFLYLPPIP--SP 636
Query: 993 TAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPP---VPSSSAQ- 1048
+ PSSP+ P SP PS T P + +P+ VSPP +P+SS+
Sbjct: 637 ESLPSSPIT---------PSPSPIPPSVPSPTYVPPPPPSPSPSPVSPPPSHIPASSSPP 687
Query: 1049 ------SADTSASVVAAAPPVIVNTHPMQT--------------------RAKNGIVKPR 1082
+ DT + P + + P Q RA++ + P
Sbjct: 688 HVPSTITLDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPN 747
Query: 1083 LQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYR 1142
++ EP++ ++A+ W AM EE AL TW +VPLP++ P+ CKW+Y+
Sbjct: 748 RDDFVVGVVFEPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYK 807
Query: 1143 IKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLD 1202
+K DG + +YKARLVA+G+ Q G DY ETF+PV TVR ++++A +R W + Q+D
Sbjct: 808 VKTKSDGQVERYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMD 867
Query: 1203 VNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGF 1262
V NAFL+G L EEVYM PPG E + V +L++ALYGLKQAPRAWF R V++ GF
Sbjct: 868 VKNAFLHGDLHEEVYMHPPPGVEAPPGH-VFRLRRALYGLKQAPRAWFARFSSVVLAAGF 926
Query: 1263 QASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYF 1322
S DP+LF + SS+G +L+YVDD++ITG + I + +L F + LG L YF
Sbjct: 927 SPSDHDPALFIHTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYF 986
Query: 1323 LGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEY 1382
LG++VT +G L+Q +YI DLL + + D+ +TPM+ V+L +G+ L DP+ Y
Sbjct: 987 LGIEVTSTVDG-YYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRY 1045
Query: 1383 RSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCS 1442
R +VG+L Y T+TRP+I++AV+ + QF++ P H+ + R+LRYL+GT T + S
Sbjct: 1046 RHLVGSLVYLTVTRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASS 1105
Query: 1443 MTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLA 1502
PL L A+ D+ W SDP DRRS +G C+FLG +L++W +KKQ+ V+RSSTEAE R+LA
Sbjct: 1106 ---PLQLRAFSDSTWASDPIDRRSVTGYCIFLGTSLLTWKSKKQTAVSRSSTEAELRALA 1162
Query: 1503 NTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKV 1561
TT+E++W++ LL + + +PT + CDN + + ++PI H TKH+ +D F R
Sbjct: 1163 TTTSEIVWLRWLLADFGVSCDVPTPLLCDNTGAIQIANDPIKHELTKHIGVDASFTRSHC 1222
Query: 1562 QDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
Q ++ + +VPSE Q AD FTKA + L KLNV
Sbjct: 1223 QQSTIALHYVPSELQVADFFTKAQTREHHRLHLLKLNV 1260
>gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H96650 protein
T3P18.3 [imported] - Arabidopsis thaliana
Length = 1309
Score = 665 bits (1717), Expect = 0.0
Identities = 421/1125 (37%), Positives = 602/1125 (53%), Gaps = 115/1125 (10%)
Query: 531 LPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLT 590
L ++P ++I L +P+ T N V D ++ A+ + + TYE
Sbjct: 175 LGREYDPITTVIQSSLSKLPAPTYNDVISEVQGFDTHIT----ASTSGLQNATTYE---- 226
Query: 591 GTVGDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLASKSA------------- 630
G+D + DG P+T S SSS PL+ + C A + +
Sbjct: 227 ---GNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPC 283
Query: 631 -----ANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRL 685
ANK IDL + V P NN + +S L S N S+ + WH RL
Sbjct: 284 GVYFDANKVC-IIDLTTQKVVSKGPRNNGLYMLENSEFVALYS-NRQCAASM-ETWHHRL 340
Query: 686 GHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPSSSSNTVYNTPFELVFAD 744
GH + +L+Q L+ I V NKS S C+ C + K RL SS+ P + V D
Sbjct: 341 GHSNSKILQQLLTRKEIQV--NKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCD 398
Query: 745 LWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSV 804
LWGP+ + S+ Q +VE Q G K+K
Sbjct: 399 LWGPSPVVSN-----------------------------------QKLVENQLGTKIKEF 423
Query: 805 QTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPL 862
Q+DGGGEF L HF++ GI HR++CP+T QNG ERKHRH+VE GL++L H+ PL
Sbjct: 424 QSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPL 483
Query: 863 QFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKL 922
+FW AF A YL N + ++ L+ SPY L+ Q D+ L+VFG+AC+P LRP NK
Sbjct: 484 KFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKF 543
Query: 923 SLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEF 981
S +CVF+GY +KGY+CL +G++YIS+ V+F E +FP+ S
Sbjct: 544 DPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPF------KEKYHSLVPK 597
Query: 982 YPLSTIPIISHT--APPSSP-----------VLAASGHSSPGPQDSPQQQQPPSATLSAD 1028
Y + + HT PPS P A+ + P ++ + S+D
Sbjct: 598 YQTTLLQAWQHTDLTPPSVPSSQLQPLARQVTPMATSENQPMMNYETEEAVNVNMETSSD 657
Query: 1029 DPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLL 1088
+ + S P + Q+ D A + N HPM TR+K+GI KP + L+
Sbjct: 658 EETESNDEFDHEVAPVLNDQNEDN-----ALGQGSLENLHPMITRSKDGIQKPNPRYALI 712
Query: 1089 LTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKE 1145
++ EP ++ AMK W A+ +E + TW+LVP + + KW+++ K
Sbjct: 713 VSKSSFDEPKTITTAMKHPGWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKL 772
Query: 1146 NPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNN 1205
PDG+I+K KARLVAKG+ Q +G DY ETFSPVV+ T+RL+L A + WPL+QLDV+N
Sbjct: 773 KPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSN 832
Query: 1206 AFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQA 1264
AFL+G L+E V+M QP GF +K N VC+L KALYGLKQAPRAWF L+ FGF+
Sbjct: 833 AFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFEC 892
Query: 1265 SKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLG 1324
S DPSLF + + + +L+YVDDI++TG+ L+ +L L++ F++K LG YFLG
Sbjct: 893 STSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLG 952
Query: 1325 VQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRS 1384
+++ +NG L L+Q Y SD+L + M + + TP+ L ++PT +RS
Sbjct: 953 IEIESYNNG-LFLHQHAYASDILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRS 1009
Query: 1385 VVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
+ G LQY TITRP+I +AVN +CQ M P + +KRILRY+KGT+ G+ P
Sbjct: 1010 LAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGL---PIRKH 1066
Query: 1445 RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANT 1504
L +CD+D+ D RRST+G C+ LG LISW+AK+Q ++ SSTEAEYR+L++T
Sbjct: 1067 HNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDT 1126
Query: 1505 TAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQD 1563
E+ W+ SLL +L I PT V+CDN+S V L+ NP LH R+KH + D ++RE+V
Sbjct: 1127 AREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVAL 1186
Query: 1564 KSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVDKQVLLSP 1608
+ QH+P+ Q AD+FTK+L F+ L+ KL V V +P
Sbjct: 1187 GLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGVSASPVSPTP 1231
Score = 103 bits (258), Expect = 4e-20
Identities = 60/173 (34%), Positives = 91/173 (51%), Gaps = 2/173 (1%)
Query: 24 SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQD--PPMIPEKFLTEEDKITENVNPLF 81
S +++KL+DSN+ WK Q E ++ S KL FV P + + +D +E NP +
Sbjct: 14 SSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQY 73
Query: 82 ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
DW D L+ +WL TLS +L +V S Q+W + FN S A+ LR L+
Sbjct: 74 EDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQL 133
Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVI 194
+TK K+ S + + K I ++L+SIG+PV + +GL EY + TVI
Sbjct: 134 LTKKDKSLSLYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVI 186
Score = 45.4 bits (106), Expect = 0.015
Identities = 37/135 (27%), Positives = 65/135 (47%), Gaps = 5/135 (3%)
Query: 468 QAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIG 527
Q+ L+ +PA + V G H+T + + + +LVG+G LPI +G
Sbjct: 187 QSSLSKLPAPTYNDVI-SEVQGFDTHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVG 245
Query: 528 SALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYEL 587
S + SS ++ L ++L+ P+I K+L+SVS+ D F AN + T ++
Sbjct: 246 STTISSS---KGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKV 302
Query: 588 LLTGTVGDDGLYYFD 602
+ G ++GLY +
Sbjct: 303 VSKGP-RNNGLYMLE 316
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,853,351,016
Number of Sequences: 2540612
Number of extensions: 130033761
Number of successful extensions: 851143
Number of sequences better than 10.0: 4765
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 3034
Number of HSP's that attempted gapping in prelim test: 782702
Number of HSP's gapped (non-prelim): 43681
length of query: 1611
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1469
effective length of database: 502,593,490
effective search space: 738309836810
effective search space used: 738309836810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0320a.8