Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0320a.8
         (1611 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ...   852  0.0
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]                        836  0.0
dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|g...   834  0.0
gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana]           833  0.0
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    833  0.0
dbj|BAA78425.1| polyprotein [Arabidopsis thaliana]                    829  0.0
gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T...   825  0.0
ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cu...   767  0.0
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ...   752  0.0
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   726  0.0
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap...   717  0.0
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja...   714  0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               709  0.0
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         708  0.0
emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|32692...   708  0.0
gb|AAK51235.1| polyprotein [Arabidopsis thaliana]                     707  0.0
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap...   699  0.0
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   691  0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ...   680  0.0
gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H...   665  0.0

>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
            gi|7444442|pir||T02087 gag/pol polyprotein - maize
            retrotransposon Hopscotch
          Length = 1439

 Score =  852 bits (2201), Expect = 0.0
 Identities = 506/1193 (42%), Positives = 692/1193 (57%), Gaps = 153/1193 (12%)

Query: 467  PQAMLATVPAHHS-SPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQS 525
            P    A   AH + S V W  D+GAT H+T +      H   +  +Q++  NG G+ I +
Sbjct: 305  PDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISN 364

Query: 526  IGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTY 585
            IG+A++P+S   + SL L+ +L VPS  KNL+SV R   DN+VF  FH++H  +  + T 
Sbjct: 365  IGNAIVPTS---SRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTK 421

Query: 586  ELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATV 645
             +LL G    DGLY    PL                              P  DL+    
Sbjct: 422  AVLLHGKC-RDGLY----PL-----------------------------PPHPDLRL--- 444

Query: 646  SPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVL--KQTLSLCNIS 703
                        N SST   L   +   G    D+ H  + + +   L    T S+C+  
Sbjct: 445  ----------KHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCD-- 492

Query: 704  VPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTC 763
                        AC  +K H+LP + S +  + P  L+F+D++GPA ++S   + Y+++ 
Sbjct: 493  ------------ACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPA-IDSFGRYKYYVSF 539

Query: 764  VDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLG 823
            +D  +K+TW++ L+ KSD   +F  FQ +VE  FG K+ + Q+D GGE++ L +HF+ +G
Sbjct: 540  IDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIG 599

Query: 824  IIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTT 883
            I H+++CPHTH QNG+ ERKHRHIVE GLALL+ +SMPL++WDHAFLAA YLINR  + T
Sbjct: 600  IHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKT 659

Query: 884  LQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKC 943
            +   +P  KL G  PD+ SL++FG AC+P LRPYN +KL   S  CVF+GYS  HKG+KC
Sbjct: 660  IAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKC 719

Query: 944  LD-QSGRIYISKDVLFHEHRFPYP--------------ILFP---------TDHSSSSSA 979
            LD  +GRIYIS+DV+F EH FP+               +L P         TDH+++   
Sbjct: 720  LDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPG 779

Query: 980  EFYPL-----------STIPIISHTA-----------------PPSSPVLAA-------S 1004
               PL           S +P  ++TA                  PSS V AA       S
Sbjct: 780  SSSPLPFLAQHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVS 839

Query: 1005 GHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVI 1064
             ++ P P+       PP AT S      + P + +P   SS A     SA + AAAP   
Sbjct: 840  ANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAP--GSSVAHQTPDSAPLSAAAP--- 894

Query: 1065 VNTHPMQTRAKNGIVKPRLQPTLLLTH-------LEPTSVKQAMKDAKWYKAMQEEYTAL 1117
                  +TR ++GI KP+      + +        EP+SV +A+ D +W  AM+ E+ AL
Sbjct: 895  ------RTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQAL 948

Query: 1118 MNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
              N TWTLVP    R  + CKW++++K N DGSI++ KARLVAKG+ Q  G DY +TFSP
Sbjct: 949  QKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSP 1008

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF-EHKDKNLVCKLQ 1236
            VVK  T+RL+LSLA+S+ W L+QLDV NAFL+G+LEE VYM QPPGF +    N  C LQ
Sbjct: 1009 VVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQ 1068

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            K+LYGLKQ PRAW+ RL E L   GF  SK D SLF Y +    IY+LVYVDDIIITG+S
Sbjct: 1069 KSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSS 1128

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
               I  + A+L   FA+K LG L YFLG++V H     LLL Q KY  DLL +V M    
Sbjct: 1129 PHAIDNVLAKLKDDFAIKDLGDLHYFLGIEV-HRKGDGLLLCQEKYARDLLKRVGMECCK 1187

Query: 1357 AISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPH 1414
             + TP+    KLS + G+ L  ++ T+YRSVVGALQY T+TRP++S+A+N+VCQF+  P 
Sbjct: 1188 PVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPT 1247

Query: 1415 EEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFL 1474
            + HW AVKRILR ++ T+  G+ ++P   +  L L A+ DADW   PDDR+ST G  +FL
Sbjct: 1248 DLHWTAVKRILRNIQHTIGLGLTIRP---SLSLMLSAFSDADWAGCPDDRKSTGGYALFL 1304

Query: 1475 GYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMS 1533
            G NLISW +KKQS V+RSSTEAEY+++AN TAE++W+QSLL EL I  T IP ++CDN+ 
Sbjct: 1305 GPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLG 1364

Query: 1534 TVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
               L+  PI + RTKH+E+D  FVR++V  K L ++ + +  Q AD FTKAL+
Sbjct: 1365 ATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALT 1417



 Score =  116 bits (290), Expect = 7e-24
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 70/368 (19%)

Query: 9   SMPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLT 68
           +M SS S+S++  +F+  +S KL   N+  WK QV   IR+ +L   +    + P K ++
Sbjct: 2   AMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTIS 61

Query: 69  E-EDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAK 127
           +  D+     NP +  W  +D  +  +LLS+LS  +L +V+ C  S  VW  +   +++ 
Sbjct: 62  DASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSH 121

Query: 128 SRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEY 187
           SRA+    R  L    KG  + +E+  +++   + L + G+P+   + +  +  GL E++
Sbjct: 122 SRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDF 181

Query: 188 SALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAP 247
           + L+T +  ++   T  ++   ++S+E R                               
Sbjct: 182 NPLVTAVVARSDPITPGDLYTQLLSYENRMH----------------------------- 212

Query: 248 APPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG 307
                           SS++ Q  A + +P + +      G G        S G GRGRG
Sbjct: 213 ------------LQTGSSSLMQSSANARSPGRGMSWGRSGGRG-------FSRGRGRGRG 253

Query: 308 R--------GRGRNV------------QCTYCSKWGHDAASCWSRPSGVSSNANSSANSA 347
                    GRG N             +C  CS+ GH A +CW R          SANSA
Sbjct: 254 PSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSA 313

Query: 348 QSGNSGSN 355
              N GSN
Sbjct: 314 AHQN-GSN 320


>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score =  836 bits (2159), Expect = 0.0
 Identities = 487/1196 (40%), Positives = 672/1196 (55%), Gaps = 124/1196 (10%)

Query: 462  STGMHPQAMLATVPAHHSSPVT---WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNG 518
            S   +P A +   P  + + ++   W  DSGATHH+T +      H P +  E++ + +G
Sbjct: 399  SPSQYPNATVPWQPRANMAAMSYNPWLLDSGATHHLTTDLNNLALHQPYNGGEEVTIADG 458

Query: 519  QGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCS 578
              LPI   GS+ L +    + SL L  +L VP++ KNL+SV +    N V   F   H  
Sbjct: 459  STLPITHTGSSTLSTQ---SRSLALNNILYVPNLHKNLISVYKLCNANKVSVEFFPAHFQ 515

Query: 579  VHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAI 638
            V    T   LL G   D+ LY +  P         S++P+S              ASP  
Sbjct: 516  VKDLSTGARLLQGRTKDE-LYEWPVP---------SNTPISLF------------ASP-- 551

Query: 639  DLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLS 698
                 T    +P                              WHSRLGHP   VLK  +S
Sbjct: 552  -----TPKTTLPS-----------------------------WHSRLGHPSPPVLKSLVS 577

Query: 699  LCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFL 758
              ++ V ++      C  C ++K H+LP  S+  +  TP E V++D+W  + + S   F 
Sbjct: 578  QFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDVW-TSPVTSVDNFK 636

Query: 759  YFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSH 818
            Y+L  VD  T+YTW++PLK+KS    TF+ F+A+VE +F  K++++ +D GGEF  L   
Sbjct: 637  YYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTKIRTLYSDNGGEFIALRQF 696

Query: 819  FQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINR 878
                GI H  + PHT   NG  ERKHRHI+ETGL LL+ AS+P  +W +AF  A YLINR
Sbjct: 697  LLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSYWTYAFGTAVYLINR 756

Query: 879  MSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINH 938
            + ++ L   SPY KL+   P++  L+VFG +CFP+LRPY ++KL   S+ CVF+GYS+  
Sbjct: 757  LPSSVLNNESPYSKLFKTSPNYLKLRVFGCSCFPWLRPYTNHKLERRSQPCVFLGYSLTQ 816

Query: 939  KGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAE-----FYPLSTIPIISH 992
              Y CLD+ SGR+Y S+ V F E +FP+ I      S+SS  E       P S IPI S 
Sbjct: 817  SAYLCLDRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSS 876

Query: 993  T-----APPSSPVLAASGHSSP-------------------------------GPQDSPQ 1016
            +     AP S P L++  H  P                               GP  S  
Sbjct: 877  SPPLVQAPSSLPPLSSDSHRRPNAETSSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSS 936

Query: 1017 QQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAA------PPVIVNTHPM 1070
             Q   ++  S+   + + P     P P +S+  +  S+S  A +      PP   N HPM
Sbjct: 937  AQSQNNSNPSSSIQTQNEPNPSPSPTPQNSSPESSPSSSTSATSTVPNPPPPPPTNNHPM 996

Query: 1071 QTRAKNGIVKPRLQPTLLLTHLE-----PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTL 1125
            +TRAKN I KP+ + +LL   ++     P +V QA++D KW  AM EE  A + N T+ L
Sbjct: 997  RTRAKNHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEKWRNAMGEEINAQIRNNTFEL 1056

Query: 1126 VPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVR 1185
            VP   N+  +  KWI+ +K  P+G++++YKARLVA+G+ Q  G  YSETFSPVVK +T+R
Sbjct: 1057 VPPKPNQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIR 1116

Query: 1186 LILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQ 1244
            L+L LA+SR W ++QLDVNNAFL G L +EVY+ QPPGF   D+ + VC+L+KALYGLKQ
Sbjct: 1117 LVLQLAVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQ 1176

Query: 1245 APRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLT 1304
            APRAW+  L+  +   GF  S  D S+F Y +    +Y LVYVDDII+TG+S +L+    
Sbjct: 1177 APRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDDIIVTGSSDALVMAFI 1236

Query: 1305 AQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQC 1364
              L   F+LK    L YFLG++ T  S G L L Q KY+ DLL+++ MLDA  +STPM  
Sbjct: 1237 TALSRRFSLKDPTDLVYFLGIEATRTSQG-LHLMQHKYVYDLLSRMKMLDAKPVSTPMAT 1295

Query: 1365 GVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRI 1424
              KLS   G AL +P EYR+V+G+LQY   TRP+I++AVN++ QFM +P + HW+A KR+
Sbjct: 1296 HPKLSLYSGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQAAKRV 1355

Query: 1425 LRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAK 1484
            LRYL GT THGILL+  S   PL L A+ DADW  D DD  ST+   V+LG   I+W++K
Sbjct: 1356 LRYLAGTATHGILLRSNS---PLSLHAFSDADWAGDNDDFVSTNAYIVYLGSTPIAWSSK 1412

Query: 1485 KQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPIL 1543
            KQ  VARSSTEAEYR++ANTT+E+ WV SLLTEL I    +P +YCDN+    L+ NP+ 
Sbjct: 1413 KQKGVARSSTEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVGATYLSANPVF 1472

Query: 1544 HTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            H+R KH+ +D  F+R+ V   +L V H+ +  Q AD  TK L    FL    K+ V
Sbjct: 1473 HSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGV 1528



 Score =  115 bits (288), Expect = 1e-23
 Identities = 85/357 (23%), Positives = 159/357 (43%), Gaps = 54/357 (15%)

Query: 6   SSPSMPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEK 65
           +S ++ +S S+S L+   ++    KL  SNF  W++QV+ ++  + L  ++    ++P  
Sbjct: 104 ASETVITSDSTSLLNVNMTNVT--KLTSSNFLMWRRQVQALLNGYDLTGYIDGSIVVPPA 161

Query: 66  FLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFN 125
            +T    +T  VNP F  W++QD L+++ LL  +S ++ P + +   S ++W ++   + 
Sbjct: 162 TITANGAVT--VNPAFKHWQRQDQLIYSALLGAISISVQPILSRTTTSAEIWTKLMDTYA 219

Query: 126 AKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSE 185
             S +   QLR ++K   K TK+  EF Q +    + LA +G+P+   + +E I +GLS+
Sbjct: 220 KPSWSHIQQLRQQIKQWKKDTKSIDEFFQGLVMRFDQLALLGKPMESEEQMEVIVEGLSD 279

Query: 186 EYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSST 245
           +Y  ++  I  +    +++E+   +++HE +                  A A + P S+ 
Sbjct: 280 DYKQVIDQIQGREVPPSLTEIHEKLLNHEVKLQ----------------AAASSLPISAN 323

Query: 246 APAPPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRG 305
           A +  PP                         +   + + +    NR+  NR +  Y + 
Sbjct: 324 AASYRPP------------------------ANNKHNNSNNYRGQNRNNNNRGANSYQQP 359

Query: 306 RG---RGRGRNVQCTYCSKWGHDAASCWSRPSGVSSNANSSANSAQSGNSGSNFSVP 359
           R      RG   +C  C  +GH A  C       S    S A S  S +   N +VP
Sbjct: 360 RNDQPSSRGYQGKCQICGVFGHSARRC-------SQLQMSGAYSTPSPSQYPNATVP 409


>dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|gb|AAK62788.1|
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1466

 Score =  834 bits (2155), Expect = 0.0
 Identities = 512/1264 (40%), Positives = 692/1264 (54%), Gaps = 157/1264 (12%)

Query: 416  PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
            PY     + G+Q  G S  R    Q    +  +Q P  P  P Q       P+A LA   
Sbjct: 274  PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324

Query: 476  AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
             + S+   W  DSGATHH+T++      H P +  + ++V +G  +PI   GS  L +  
Sbjct: 325  PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382

Query: 536  NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
             P   L L  +L VP+I KNL+SV R    N V   F      V   +T   LL G   D
Sbjct: 383  RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 596  DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
            +    ++ P+        SS P+S              ASP                   
Sbjct: 440  E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458

Query: 656  SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
                             S  + +  WH+RLGHP   +L   +S  ++SV +    F  C 
Sbjct: 459  -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 716  ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
             C ++K +++P S S      P E +++D+W    L S   + Y++  VD  T+YTW++P
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560

Query: 776  LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
            LK+KS    TFI F+ ++E +F  ++ +  +D GGEF  L  +F + GI H  + PHT  
Sbjct: 561  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620

Query: 836  QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
             NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+G
Sbjct: 621  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680

Query: 896  QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
              P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  Q+ R+YIS+
Sbjct: 681  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740

Query: 955  DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
             V F E+ FP+     T     +    SS  + P +T+P  +            H A PP
Sbjct: 741  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800

Query: 997  SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
            SSP                  ++S  SSP        GPQ + Q  Q  + T S+ + S 
Sbjct: 801  SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860

Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
            + P   SP                 P P++SA S+ TS    S++   PP +        
Sbjct: 861  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920

Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
               +NTH M TRAK GI+KP  + +L   L    EP +  QA+KD +W  AM  E  A +
Sbjct: 921  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
             N TW LVP P +  T VGC+WI+  K N DGS+N+YKARLVAKGY+Q  G DY+ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1040

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYVDDI+ITG  
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL + NM+ A 
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
             ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ QFM  P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279

Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
            H +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST+G  V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336

Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
            + ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P +YCDN+   
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396

Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
             L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS T F     
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456

Query: 1596 KLNV 1599
            K+ V
Sbjct: 1457 KIGV 1460



 Score =  107 bits (266), Expect = 4e-21
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W +QV  +   ++L  F+     +P   +  +      VNP +  W++QD 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQLR +LK  TKGTKT 
Sbjct: 83  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            +++Q + T  + LA +G+P+   + +E + + L EEY  ++  I  + T  T++E+   
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 210 VISHEAR 216
           +++HE++
Sbjct: 203 LLNHESK 209


>gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana]
          Length = 1466

 Score =  833 bits (2151), Expect = 0.0
 Identities = 511/1264 (40%), Positives = 691/1264 (54%), Gaps = 157/1264 (12%)

Query: 416  PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
            PY     + G+Q  G S  R    Q    +  +Q P  P  P Q       P+A LA   
Sbjct: 274  PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324

Query: 476  AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
             + S+   W  DSGATHH+T++      H P +  + ++V +G  +PI   GS  L +  
Sbjct: 325  PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382

Query: 536  NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
             P   L L  +L VP+I KNL+SV R    N V   F      V   +T   LL G   D
Sbjct: 383  RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 596  DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
            +    ++ P+        SS P+S              ASP                   
Sbjct: 440  E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458

Query: 656  SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
                             S  + +  WH+RLGHP   +L   +S  ++SV +    F  C 
Sbjct: 459  -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 716  ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
             C ++K +++P S S      P E +++D+W    L S   + Y++  VD  T+YTW++P
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560

Query: 776  LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
            LK+KS    TFI F+ ++E +F  ++ +  +D GGEF  L  +F + GI H  + PHT  
Sbjct: 561  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620

Query: 836  QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
             NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+G
Sbjct: 621  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680

Query: 896  QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
              P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  Q+ R+YIS+
Sbjct: 681  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740

Query: 955  DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
             V F E+ FP+     T     +    SS  + P +T+P  +            H A PP
Sbjct: 741  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800

Query: 997  SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
            SSP                  ++S  SSP        GPQ + Q  Q  + T S+ + S 
Sbjct: 801  SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860

Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
            + P   SP                 P P++SA S+ TS    S++   PP +        
Sbjct: 861  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920

Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
               +NTH M TRAK GI+KP  + +L   L    EP +  QA+KD +W  AM  E  A +
Sbjct: 921  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
             N TW LVP P +  T VGC+WI+  K N DGS+N+YKAR VAKGY+Q  G DY+ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1040

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYVDDI+ITG  
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL + NM+ A 
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
             ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ QFM  P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279

Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
            H +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST+G  V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336

Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
            + ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P +YCDN+   
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396

Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
             L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS T F     
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456

Query: 1596 KLNV 1599
            K+ V
Sbjct: 1457 KIGV 1460



 Score =  107 bits (266), Expect = 4e-21
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W +QV  +   ++L  F+     +P   +  +      VNP +  W++QD 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQLR +LK  TKGTKT 
Sbjct: 83  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            +++Q + T  + LA +G+P+   + +E + + L EEY  ++  I  + T  T++E+   
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 210 VISHEAR 216
           +++HE++
Sbjct: 203 LLNHESK 209


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  833 bits (2151), Expect = 0.0
 Identities = 511/1264 (40%), Positives = 690/1264 (54%), Gaps = 157/1264 (12%)

Query: 416  PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
            PY     + G+Q  G S  R    Q    +  +Q P  P  P Q       P+A LA   
Sbjct: 239  PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 289

Query: 476  AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
             + S+   W  DSGATHH+T++      H P +  + ++V +G  +PI   GS  L +  
Sbjct: 290  PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 347

Query: 536  NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
             P   L L  +L VP+I KNL+SV R    N V   F      V   +T   LL G   D
Sbjct: 348  RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 404

Query: 596  DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
            +    ++ P+        SS P+S              ASP                   
Sbjct: 405  E---LYEWPIA-------SSQPVSLF------------ASP------------------- 423

Query: 656  SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
                             S  + +  WH+RLGHP   +L   +S  ++SV +    F  C 
Sbjct: 424  -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 466

Query: 716  ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
             C ++K +++P S S      P E +++D+W    L S   + Y++  VD  T+YTW++P
Sbjct: 467  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 525

Query: 776  LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
            LK+KS    TFI F+ ++E +F  ++ +  +D GGEF  L  +F + GI H  + PHT  
Sbjct: 526  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 585

Query: 836  QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
             NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+G
Sbjct: 586  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 645

Query: 896  QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
              P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  Q+ R+YIS+
Sbjct: 646  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 705

Query: 955  DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
             V F E+ FP+     T     +    SS  + P +T+P  +            H A PP
Sbjct: 706  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPGLPAPSGSDPHHAATPP 765

Query: 997  SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
            SSP                  ++S  SSP        GPQ   Q  Q  + T S+ + S 
Sbjct: 766  SSPSAPFRNSQVSSSNRESYFSSSFPSSPEPTAPRQNGPQPKTQPTQTQTQTHSSQNTSQ 825

Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
            + P   SP                 P P++SA S+ TS    S++   PP +        
Sbjct: 826  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 885

Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
               +NTH M TRAK GI+KP  + +L   L    EP +  QA+KD +W  AM  E  A +
Sbjct: 886  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 945

Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
             N TW LVP P +  T VGC+WI+  K N DGS+N+YKAR VAKGY+Q  G DY+ETFSP
Sbjct: 946  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1005

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD+ N VCKL+
Sbjct: 1006 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1065

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYVDDI+ITG  
Sbjct: 1066 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1125

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL + NM+ A 
Sbjct: 1126 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1184

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
             ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ QFM  P EE
Sbjct: 1185 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1244

Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
            H +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST+G  V+LG+
Sbjct: 1245 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1301

Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
            + ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P +YCDN+   
Sbjct: 1302 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1361

Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
             L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS T F     
Sbjct: 1362 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1421

Query: 1596 KLNV 1599
            K+ V
Sbjct: 1422 KIGV 1425



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 53/84 (62%)

Query: 133 TQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMT 192
           TQLR +LK  TKGTKT  +++Q + T  + LA +G+P+   + +E + + L EEY  ++ 
Sbjct: 91  TQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVID 150

Query: 193 VIYNQTTYFTISEVEAMVISHEAR 216
            I  + T  T++E+   +++HE++
Sbjct: 151 QIAAKDTPPTLTEIHERLLNHESK 174


>dbj|BAA78425.1| polyprotein [Arabidopsis thaliana]
          Length = 1447

 Score =  829 bits (2141), Expect = 0.0
 Identities = 501/1213 (41%), Positives = 674/1213 (55%), Gaps = 148/1213 (12%)

Query: 467  PQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSI 526
            P+A LA    + S+  +W  DSGATHH+T++      H P +  + ++V +G  +PI   
Sbjct: 297  PRANLALGSPYSSN--SWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVVDGSTIPISHT 354

Query: 527  GSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYE 586
            GS  L +   P   L L  +L VP+I KNL+SV R    N V   F      V   +T  
Sbjct: 355  GSTSLSTKSRP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLASFQVKDLNTGV 411

Query: 587  LLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVS 646
             LL G   D+    ++ P+        SS P+S              ASP          
Sbjct: 412  PLLQGKTKDE---LYEWPIA-------SSQPVSLF------------ASP---------- 439

Query: 647  PIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPS 706
                                      S  + +  WH+RLGHP   +L   +S  ++SV +
Sbjct: 440  --------------------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLN 473

Query: 707  NKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDA 766
                F  C    ++K +++P S S      P E +++D+W    L S   + Y++  VD 
Sbjct: 474  PSHKFLSCLDSLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDH 532

Query: 767  CTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIH 826
             T+YTW++PLK+KS    TFI F+ +VE +F  ++ +  +D GGEF  L  +F + GI H
Sbjct: 533  FTRYTWLYPLKQKSQVKETFITFKNLVENRFQTRIGTFYSDNGGEFVALREYFSQHGISH 592

Query: 827  RLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG 886
              + PHT   NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ 
Sbjct: 593  LTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQL 652

Query: 887  ASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD- 945
             SP  KL+G  P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  
Sbjct: 653  ESPCQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHL 712

Query: 946  QSGRIYISKDVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS--------- 991
            Q+ RIYIS+ V F E+ FP+     T     +    SS  + P +T+P  +         
Sbjct: 713  QTSRIYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 772

Query: 992  ---HTA-PPSSP----------------VLAASGHSSP--------GPQDSPQQQQPPSA 1023
               H A PPSSP                  ++S  SSP        GPQ + Q  Q  + 
Sbjct: 773  DPHHAATPPSSPSAPSRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 832

Query: 1024 TLSADDPSTSTPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPV 1063
            T S+ + S + P   SP                 P P++SA S+ TS    S++   PP 
Sbjct: 833  THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 892

Query: 1064 I-----------VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKA 1109
            +           +NTH M TRAK GI+KP L+ +L   L    EP +  QA+KD +W  A
Sbjct: 893  LAQIVNNNNQAPINTHSMGTRAKAGIIKPNLKYSLAVSLAAESEPRTAIQALKDERWRNA 952

Query: 1110 MQEEYTALMNNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
            M  E  A + N TW LVP P +  T VGC+WI+  K N DGS+N+YKARLVAKGY+Q  G
Sbjct: 953  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1012

Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKD 1228
             DY ETFSPV+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD
Sbjct: 1013 LDYVETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1072

Query: 1229 K-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYV 1287
            + N VCKL+KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYV
Sbjct: 1073 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1132

Query: 1288 DDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLL 1347
            DDI+ITG   +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL
Sbjct: 1133 DDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLL 1191

Query: 1348 TKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
             + NM+ A  ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ 
Sbjct: 1192 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1251

Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
            QFM  P EEH +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST
Sbjct: 1252 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWTGDKDDYVST 1308

Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPT 1526
            +G  V+LG++ ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P 
Sbjct: 1309 NGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPV 1368

Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
            +YCDN+    L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS
Sbjct: 1369 IYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1428

Query: 1587 PTRFLLLKDKLNV 1599
             T F     K+ V
Sbjct: 1429 RTAFQNFASKIGV 1441



 Score =  101 bits (252), Expect = 2e-19
 Identities = 51/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W +QV  +   ++L  F+     +P   +  +      VNP +  W++QD 
Sbjct: 6   KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 63

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQ R +LK  TKGTKT 
Sbjct: 64  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTI 123

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            +++Q   T  + LA +G+P+   + +E + + L EEY  ++  I  + T  T++E+   
Sbjct: 124 DDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 183

Query: 210 VISHEAR 216
           +++ E++
Sbjct: 184 LLNQESK 190


>gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T10728 probable
            gag/pol polyprotein - long-staminate rice retrotransposon
            retrofit
          Length = 1445

 Score =  825 bits (2131), Expect = 0.0
 Identities = 490/1205 (40%), Positives = 681/1205 (55%), Gaps = 140/1205 (11%)

Query: 468  QAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIG 527
            + ++A     +     W  D+GAT H+T            +  EQ+   +G G+ I  IG
Sbjct: 305  EKLVAAATNSYGIDTNWYIDTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIG 364

Query: 528  SALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYEL 587
              ++ +   P+ ++ L  +L VP   KNL+S S+ A DN+ F   H+   S+  Q T ++
Sbjct: 365  HTIVHT---PSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDV 421

Query: 588  LLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVS- 646
            LL G     GLY    P+ K   +  +   L + +  L S+  +    P++ +    +S 
Sbjct: 422  LLEGKC-RHGLY----PIPKFFGRSTNKQALGAAKLSL-SRWHSRLGHPSLPIVKQVISR 475

Query: 647  PIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPS 706
              +PC + +SVN S                                              
Sbjct: 476  NNLPC-SVESVNQS---------------------------------------------- 488

Query: 707  NKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDA 766
                   C AC  +K H+LP   S +V   P ELVF+D+WGPA  ES     Y+++ +D 
Sbjct: 489  ------VCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-ESVGRNKYYVSFIDD 541

Query: 767  CTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTD-GGGEFKPLTSHFQKLGII 825
             +K+TW++ LK KS+    F  FQA+VE  F  K+ ++QTD  GG ++ L S F ++G+I
Sbjct: 542  FSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWRGGRYQKLNSFFAQIGLI 601

Query: 826  HRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQ 885
                      QNGS ERKHRHIVE GL+LLS+ASMPL+FWD AF+AATYLINR+ + T+Q
Sbjct: 602  IMCHVLTLIRQNGSAERKHRHIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQ 661

Query: 886  GASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD 945
             ++P  KL+ Q PD+ SL+VFG AC+P LRPYN++KL   SK+CVF+G+S +HKG+KCLD
Sbjct: 662  NSTPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLD 721

Query: 946  -QSGRIYISKDVLFHEHRFPYP--------------ILFPTDHSSSSSAEFYPLSTIPII 990
              SGR+YIS+DV+F E+ FP+               +L P+  ++ ++A       +  +
Sbjct: 722  VSSGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTASAGGTHVVAPV 781

Query: 991  SHTAPPSSPVLA-----ASGHSSPGPQDSPQQQQPPSATLSADD---PSTSTPAVVSPPV 1042
            ++T  PS  +++      SG +S   +   + +Q     +  +D    + S P +  P  
Sbjct: 782  ANTPLPSDNLISNAADVTSGENSAAHEQEMENEQEIENVMHGNDVHGDAASGPVLDQPTA 841

Query: 1043 PSSSA--QSADTSASVVAAAPPVIVNTHPMQTRAKNGI---------VKPRLQPTLLLTH 1091
             SS+A  Q ADTS +V  AA     +T  +   A N           V+P +  T+L T 
Sbjct: 842  DSSTAPDQGADTSDAVSGAASDAGGDTATLGAGAANSAAAGGEESQPVQPDVTGTVLATV 901

Query: 1092 L---------------------------------EPTSVKQAMKDAKWYKAMQEEYTALM 1118
                                              EP + K+A+ D  W  AM+ EY AL+
Sbjct: 902  APASRPHTRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALI 961

Query: 1119 NNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPV 1178
             N TW LVP    +  +GCKW+Y+IK   DG++++YKARLVAKG+ Q  G DY +TFSPV
Sbjct: 962  KNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPV 1021

Query: 1179 VKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQK 1237
            VK  T+R+ILS+A+SRGW L+QLDV NAFL+G LEEEVYM QPPGFE   K + VCKL K
Sbjct: 1022 VKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDK 1081

Query: 1238 ALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASM 1297
            ALYGLKQAPRAW+ RL + L+  GF+ASK D SLF        +++LVYVDDII+  ++ 
Sbjct: 1082 ALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTE 1141

Query: 1298 SLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAA 1357
                 L   L+  FALK LG L YFLG++VT +SNG ++L Q KY +DLL +VNM +   
Sbjct: 1142 KATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNG-VILTQEKYANDLLKRVNMSNCKP 1200

Query: 1358 ISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHE 1415
            +STP+    KL+  EGS L   D  +YRS+VGALQY T+TRP+I+++VNKVCQF+  P  
Sbjct: 1201 VSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTT 1260

Query: 1416 EHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLG 1475
             HW AVKRILRYL    + G+ +   + T    +  Y DADW    DDR+ST G  VFLG
Sbjct: 1261 SHWIAVKRILRYLNQCTSLGLHIHKSASTL---VHGYSDADWAGSIDDRKSTGGFAVFLG 1317

Query: 1476 YNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMST 1534
             NL+SW+A+KQ  V+RSSTEAEY+++ANTTAEL+WVQ+LL EL I       ++CDN+  
Sbjct: 1318 SNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGA 1377

Query: 1535 VLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLK 1594
              L+ NP+ H RTKH+E+D  FVRE+V  K L +  VPS  Q AD FTKALS       K
Sbjct: 1378 KYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFK 1437

Query: 1595 DKLNV 1599
              LN+
Sbjct: 1438 HNLNL 1442



 Score =  128 bits (322), Expect = 1e-27
 Identities = 91/328 (27%), Positives = 145/328 (43%), Gaps = 37/328 (11%)

Query: 10  MPSSSSSSSLSQAF---SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIP--E 64
           M SSSSSS  + A     H +S KL  +N   WK QV   +R  +L  ++      P  E
Sbjct: 1   MASSSSSSGAAAANLLQGHSVSEKLGKANHALWKAQVSAAVRGARLLGYLNGDIKAPDAE 60

Query: 65  KFLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFF 124
             +T + K T   NP F DWE  D L+  +LLS+LS  +L  V  C  + + W  I + +
Sbjct: 61  LSVTIDGKTTTKPNPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALY 120

Query: 125 NAKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLS 184
           +  +RA++   R  L N  KGT   +E++ +++ + + +A+ G P+   D ++ I  GL+
Sbjct: 121 STGTRARAVNTRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGHPLDEEDLVQYIIAGLN 180

Query: 185 EEYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSS 244
           E++S +++ + N++   T+ E+ + +++ E   D  R         A F+A         
Sbjct: 181 EDFSPIVSNLCNKSDPITVGELYSQLVNFETLLDLYRS---TGQGGAAFVANRGRGGGGG 237

Query: 245 TAPAPPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGR 304
                        + AP                            G R   ++  GG GR
Sbjct: 238 GRGNNNNSGGGGGRSAP----------------------------GGRGSGSQGRGGRGR 269

Query: 305 GRGRGRGRNVQCTYCSKWGHDAASCWSR 332
           G G G+ R   C  C K GH AA CW R
Sbjct: 270 GTG-GQDRRPTCQVCFKRGHTAADCWYR 296


>ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|50080247|gb|AAT69582.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1256

 Score =  767 bits (1981), Expect = 0.0
 Identities = 420/913 (46%), Positives = 562/913 (61%), Gaps = 64/913 (7%)

Query: 743  ADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLK 802
            AD+WGPA +    G  Y+++ +DA +++TW++ LK KS+    F  FQ +VE  F  K+ 
Sbjct: 349  ADVWGPAPVAGG-GKKYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKII 407

Query: 803  SVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPL 862
            S+QTD GGE++ L + F K+GI H ++CPHTH QNGS ERKHRHIVE GL+LL+HAS+PL
Sbjct: 408  SMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPL 467

Query: 863  QFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKL 922
            +FWD A+ +  YLINRM T  L  +SP   L+ Q PD+++L+ FG AC+P LRPYNS+K+
Sbjct: 468  KFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKM 527

Query: 923  SLHSKECVFIGYSINHKGYKCLDQS-GRIYISKDVLFHEHRFPY---------------- 965
               SK C F+GYS  HKG++CLD S GRIYIS+DV+F E  FP+                
Sbjct: 528  HFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFAELNPNAGTNLRKEVN 587

Query: 966  ----PILFPTDHSSSSSAEFYPLSTIPIISHTAP-------------------------- 995
                 +L P D   +    +YP +   +++   P                          
Sbjct: 588  LLPADMLNPGDVQLNDHVNYYPTAPANMVAAENPVENTEENLASTRDDAADSGGSDTGTI 647

Query: 996  -PSSPVLAASGH--SSPGPQDSPQQQQPPSATLS-ADDPSTSTPAVVSPPVPSSSAQSAD 1051
              + P   A+G   ++P   DS   +   SA+ S A   S +T    + P P    Q+  
Sbjct: 648  SNADPADDAAGDMTANPNLNDSSTHESSISASASPASQSSVATAPEATLPNPQQHQQALR 707

Query: 1052 TSASVVAAAPPVIVNTHPMQTRAKNGIVKPR-LQPTLLLTHLEPTSVKQAMKDAKWYKAM 1110
            +S     A+ PV   TH  +   K  I   R ++   L T  EP  +  A+ D  W  AM
Sbjct: 708  SSTPEGEASRPV---THLQKGIRKEKIYTDRTVKYGCLTTTGEPRDLHDALHDTNWKHAM 764

Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
              ++TAL++N TW LVP    R  +  KW+Y+IK   DGS+++YKARLVAKG+ Q  G D
Sbjct: 765  DAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 824

Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHK-DK 1229
            Y +TFSPVVK  T+R+ILS+A+SRGW L+QLDV NAFL+G+LEEEVYM QPPG+E K   
Sbjct: 825  YEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHP 884

Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
            + VCKL KALYGLKQAPRAW+ +L + L   GFQ SK D SLF Y      I++LVYVDD
Sbjct: 885  DYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDD 944

Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
            II+  +    +  L   L   FALK LG L YFLG++V   S+G ++L Q KY++DLL +
Sbjct: 945  IIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSG-IVLTQEKYVTDLLRR 1003

Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSAL--KDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
            V M D   +STP+    KL+ +EG  L   D + YRSVVGALQY T+TRP+I F VNKVC
Sbjct: 1004 VGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVC 1063

Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
            QF+  P   HW A+KRILRYLK     G+ +   S ++ + +  Y DADW  + DDRRST
Sbjct: 1064 QFLHAPTIVHWAAMKRILRYLKQCTKLGLKI---SKSKSMLVSGYSDADWAGNIDDRRST 1120

Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPT 1526
             G  VFLG NL+SW AKKQ+ V RSSTE+EY++LAN TAE++W+Q+LL EL +P   +  
Sbjct: 1121 GGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMAR 1180

Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
            ++CDN+    L+ NP+ H RTKH+E+D  FVRE++Q K L V+ +P+  Q AD FTKALS
Sbjct: 1181 LWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALS 1240

Query: 1587 PTRFLLLKDKLNV 1599
              +    K  LNV
Sbjct: 1241 ARQLENFKYNLNV 1253



 Score =  112 bits (280), Expect = 1e-22
 Identities = 80/336 (23%), Positives = 139/336 (40%), Gaps = 59/336 (17%)

Query: 10  MPSSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEK--FL 67
           M SSS SS+        ++ KL   N+  WK QV  VIR  +L  ++      P     +
Sbjct: 1   MASSSQSSASGSLGGITVTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIII 60

Query: 68  TEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAK 127
            + +K  E  NP   +W   D  +  +LL+T+S  +L  V  C  +  +W  I   F++ 
Sbjct: 61  KKNEKEVEVSNPAVDEWIANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSA 120

Query: 128 SRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEY 187
           +RA+S   +  L N  KG    +E++ +++ + + LA+ G+PV   D +  I  GL E++
Sbjct: 121 TRARSINTKIALTNTKKGDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDF 180

Query: 188 SALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAP 247
             +++ + +++ + ++ E  + ++S E R  +MR++  A+  +     + + +P      
Sbjct: 181 EPIISSLVSKSEHVSLGEAYSQLLSFEQRM-KMRQEHSANLANR---GRGRGNPGRGRNN 236

Query: 248 APPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG 307
             P                                           +Q R  GG  RGRG
Sbjct: 237 KQP------------------------------------------QQQQRGHGGNSRGRG 254

Query: 308 RGRGRN-----------VQCTYCSKWGHDAASCWSR 332
           RG   N            +C  C K GH    CW R
Sbjct: 255 RGNNSNQRQGGNGVDYRPKCQLCYKRGHTVIDCWYR 290


>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
            gi|25301689|pir||C96578 hypothetical protein T18A20.5
            [imported] - Arabidopsis thaliana
          Length = 1522

 Score =  752 bits (1942), Expect = 0.0
 Identities = 459/1182 (38%), Positives = 637/1182 (53%), Gaps = 121/1182 (10%)

Query: 471  LATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSAL 530
            +  V  HH     W PDS A+ HVTNN  +     P    + ++V +G  LPI   GS  
Sbjct: 315  ITDVTDHHGHE--WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGS 372

Query: 531  LPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLT 590
            + SS   +  + LK++L+ P I K+L+SVS+   D      F A+   ++ + T +LL+ 
Sbjct: 373  IASS---SGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVM 429

Query: 591  GTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVP 650
            G    DGLY  + P  +     + +S  S +            A+  +  Q A+   I+ 
Sbjct: 430  GR-NRDGLYSLEEPKLQVLYSTRQNSASSEVW-----HRRLGHANAEVLHQLASSKSIII 483

Query: 651  CNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSV 710
             N      V  TV +  +C+ G                    L   LS  N S P     
Sbjct: 484  IN-----KVVKTVCE--ACHLGKSTR----------------LPFMLSTFNASRP----- 515

Query: 711  FSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKY 770
                    L ++H                    DLWGP+   S  GF Y++  +D  +++
Sbjct: 516  --------LERIH-------------------CDLWGPSPTSSVQGFRYYVVFIDHYSRF 548

Query: 771  TWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRL 828
            TW +PLK KSD  +TF+ FQ +VE Q GHK+K  Q DGGGEF       H Q  GI   +
Sbjct: 549  TWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNM 608

Query: 829  TCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTL-QGA 887
            +CP+T  QNG  ERKHRHIVE GL+++  + +PL++W  +F  A ++IN + T++L    
Sbjct: 609  SCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLDNNE 668

Query: 888  SPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQ 946
            SPY KLYG+ P++ +L+VFG AC+P LR Y S K    S +CVF+GY+  +KGY+CL   
Sbjct: 669  SPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCLYPP 728

Query: 947  SGRIYISKDVLFHEHRFP----YPILFPTDHSSSSSAEF---------------YPLSTI 987
            +GRIYIS+ V+F E+  P    Y  L P D +    A F               YP+S+I
Sbjct: 729  TGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVSSI 788

Query: 988  PIISHTAPPSSPVLAASGHSSPGPQDSPQQQQ--------PPSATLSADDPST-----ST 1034
            P    T   ++P   A+  + P   D   Q           P  T   D  S      S 
Sbjct: 789  PQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYHSP 848

Query: 1035 PAVVSPPVPSSSAQSADTSASVVAAAP-----PVIVNTHPMQTRAKNGIVKPRLQPTLLL 1089
             A  S P P+ S+ ++    S +  AP       + N H M TR K GI KP  +  +LL
Sbjct: 849  TADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPN-KRYVLL 907

Query: 1090 THL----EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKE 1145
            TH     EP +V +A+K   W  AMQEE        TWTLVP   N   +G  W++R K 
Sbjct: 908  THKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRTKL 967

Query: 1146 NPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNN 1205
            + DGS++K KARLVAKG+ Q +G DY ET+SPVV+  TVRLIL +A    W L+Q+DV N
Sbjct: 968  HADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKN 1027

Query: 1206 AFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQA 1264
            AFL+G L E VYM QP GF  K K + VC L K+LYGLKQ+PRAWF R    L+ FGF  
Sbjct: 1028 AFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFIC 1087

Query: 1265 SKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLG 1324
            S  DPSLF Y S+   I +L+YVDD++ITG +   +  L A L+  F +K +GQ+ YFLG
Sbjct: 1088 SLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLG 1147

Query: 1325 VQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRS 1384
            +Q+    +G L ++Q KY  DLL   +M + + + TP+   +    N+     DPT +RS
Sbjct: 1148 IQI-QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRS 1206

Query: 1385 VVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
            + G LQY T+TRP+I FAVN VCQ M QP    +  +KRILRY+KGT++ GI     S +
Sbjct: 1207 LAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSS 1266

Query: 1445 ------RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEY 1498
                      L AY D+D+ +  + RRS  G C F+G N+ISW++KKQ  V+RSSTEAEY
Sbjct: 1267 VVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEY 1326

Query: 1499 RSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFV 1557
            RSL+ T +E+ W+ S+L E+ +     P ++CDN+S V LT NP  H RTKH ++D  ++
Sbjct: 1327 RSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYI 1386

Query: 1558 REKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            RE+V  K+L+V+H+P   Q ADIFTK+L    F  L+ KL V
Sbjct: 1387 RERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGV 1428



 Score =  104 bits (259), Expect = 3e-20
 Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 72/333 (21%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLF 81
           S+ +++ L+  N+  WK Q E  +    L  FV      P   + +T  +  +E  NP F
Sbjct: 12  SNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEF 71

Query: 82  ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
             W Q D ++ +WLL + +  IL  V+ C  S+QVW  + + FN  S ++  +L+  L+ 
Sbjct: 72  YTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQT 131

Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYN---QT 198
           + K   T   FL+ +K I + LAS+G PV  +  + +  +GL  EY  + T I N     
Sbjct: 132 LEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSN 191

Query: 199 TYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQ 258
              ++ EV + +  ++ R                                    Q+  T+
Sbjct: 192 PSLSLDEVASKLRGYDDRL-----------------------------------QSYVTE 216

Query: 259 PAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG----RGRGRNV 314
           P      T++   A +V  S       DSGY + + + +     G G+     RGRG + 
Sbjct: 217 P------TISPHVAFNVTHS-------DSGYYHNNNRGKGRSNSGSGKSSFSTRGRGFHQ 263

Query: 315 Q---------------CTYCSKWGHDAASCWSR 332
           Q               C  C K GH A  CW R
Sbjct: 264 QISPTSGSQAGNSGLVCQICGKAGHHALKCWHR 296


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
            Arabidopsis thaliana BAC gb|AF080119 and is a member of
            the reverse transcriptase family PF|00078
            gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
            Arabidopsis thaliana
          Length = 1415

 Score =  726 bits (1875), Expect = 0.0
 Identities = 435/1151 (37%), Positives = 625/1151 (53%), Gaps = 146/1151 (12%)

Query: 484  WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
            W PDS AT HVT++             + +LVG+G  LPI   GS  + SS      + L
Sbjct: 322  WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSS---NGKIPL 378

Query: 544  KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
             ++L+VP+I K+L+SVS+   D      F AN   +    T +++ TG    +GLY  + 
Sbjct: 379  NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGP-RRNGLYVLEN 437

Query: 604  PLTKASSQPQSSSPLSSIQACLASKS--------AANKA------SPAIDLQSATVSPIV 649
                     Q    L S + C A++         A +KA      S AI +  +  SP+ 
Sbjct: 438  ---------QEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVC 488

Query: 650  -PCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNK 708
             PC    S  +   +SD                 SR+ HP                    
Sbjct: 489  EPCQMGKSSRLPFLISD-----------------SRVLHP-------------------- 511

Query: 709  SVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACT 768
                      L ++H                    DLWGP+ + S+ G  Y+   VD  +
Sbjct: 512  ----------LDRIH-------------------CDLWGPSPVVSNQGLKYYAIFVDDYS 542

Query: 769  KYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIH 826
            +Y+W +PL  KS+  + FI+FQ +VE Q   K+K  Q+DGGGEF    L +H  + GI H
Sbjct: 543  RYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHH 602

Query: 827  RLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG 886
            R++CP+T  QNG  ERKHRH+VE GL++L H+  P +FW  +F  A Y+INR+ ++ L+ 
Sbjct: 603  RISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKN 662

Query: 887  ASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-D 945
             SPY  L+G+ PD+ SL+VFGSAC+P LRP   NK    S +CVF+GY+  +KGY+C   
Sbjct: 663  LSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYP 722

Query: 946  QSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPI--------ISHTAPPS 997
             +G++YIS++V+F+E   P+                 P  + P+        IS  + P+
Sbjct: 723  PTGKVYISRNVIFNESELPF---------KEKYQSLVPQYSTPLLQAWQHNKISEISVPA 773

Query: 998  SPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTS---- 1053
            +PV   S              +P      A    T     ++ P P+S+ + +D      
Sbjct: 774  APVQLFS--------------KPIDLNTYAGSQVTEQ---LTDPEPTSNNEGSDEEVNPV 816

Query: 1054 ASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAM 1110
            A  +AA    ++N+H M TR+K GI KP  +  L+ + +   EP ++  AMK   W +A+
Sbjct: 817  AEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAV 876

Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
             EE   +    TW+LVP   +   +  KW+++ K +PDGSI+K KARLVAKG+ Q +G D
Sbjct: 877  HEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVD 936

Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK- 1229
            Y ETFSPVV+  T+RL+L ++ S+GWP++QLDV+NAFL+G L+E V+M QP GF    K 
Sbjct: 937  YLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKP 996

Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
              VC+L KA+YGLKQAPRAWF      L+ +GF  SK DPSLF  +     +Y+L+YVDD
Sbjct: 997  THVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDD 1056

Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
            I++TG+  SL++ L   L + F++K LG   YFLG+Q+   +NG L L+QT Y +D+L +
Sbjct: 1057 ILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANG-LFLHQTAYATDILQQ 1115

Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQF 1409
              M D   + TP+    +L         +PT +RS+ G LQY TITRP+I FAVN +CQ 
Sbjct: 1116 AGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQR 1173

Query: 1410 MAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSG 1469
            M  P    +  +KRILRY+KGT+  G+   P      L L AY D+D     + RRST+G
Sbjct: 1174 MHSPTTSDFGLLKRILRYIKGTIGMGL---PIKRNSTLTLSAYSDSDHAGCKNTRRSTTG 1230

Query: 1470 SCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VY 1528
             C+ LG NLISW+AK+Q  V+ SSTEAEYR+L     E+ W+  LL +L IP  +PT VY
Sbjct: 1231 FCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVY 1290

Query: 1529 CDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPT 1588
            CDN+S V L+ NP LH R+KH + D  ++RE+V    +  QH+ +  Q AD+FTK+L   
Sbjct: 1291 CDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRR 1350

Query: 1589 RFLLLKDKLNV 1599
             F+ L+ KL V
Sbjct: 1351 AFVDLRSKLGV 1361



 Score =  107 bits (267), Expect = 3e-21
 Identities = 91/318 (28%), Positives = 133/318 (41%), Gaps = 49/318 (15%)

Query: 27  LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLFADW 84
           +++KL DSN+  WK Q E ++ S KL  FV      P   + +   +  +E  NPL+  W
Sbjct: 17  VTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESW 76

Query: 85  EQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITK 144
              D L+ +WL  TLS  +L +V     S Q+W  +   FN  S A+   LR  L+ ++K
Sbjct: 77  FCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSK 136

Query: 145 GTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTIS 204
             K  S + +  KTI + L+SIG+PV     +    +GL  +Y  + TVI +  +     
Sbjct: 137 KEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVIQSSLSKLPTP 196

Query: 205 EVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQN-SPSSSTAPAPPPPQAMWTQPAPAP 263
                V+S    FD   K Q  +  ++V    A N   S S +P   P Q          
Sbjct: 197 TFND-VVSEVQGFD--SKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQ---------- 243

Query: 264 SSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRGRGR--------GRNV 314
                                   G G R  QN+  GGY  RGRG  +        G   
Sbjct: 244 -----------------------KGRG-RSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRP 279

Query: 315 QCTYCSKWGHDAASCWSR 332
            C  C + GH A  C++R
Sbjct: 280 VCQICGRTGHTALKCYNR 297


>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1373

 Score =  717 bits (1850), Expect = 0.0
 Identities = 425/1035 (41%), Positives = 587/1035 (56%), Gaps = 87/1035 (8%)

Query: 637  AIDLQSATVSPIVPCNNADSVN-----VSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHD 691
            A+DL++  V  I  CN++  +       +ST + L +  S        LWH RLGH   +
Sbjct: 353  ALDLETRNV--IARCNSSGDLYPFYPPATSTHALLAAPTS--------LWHRRLGHLGRE 402

Query: 692  VLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASL 751
             L + +    IS   +  +   C AC L    RLP SSS++  +  F+L+  DLW  + +
Sbjct: 403  ALSKLIRSSVISCTKD-DLPHLCHACQLGHHTRLPFSSSSSRASNNFDLIHCDLW-TSPI 460

Query: 752  ESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGE 811
             S  G+ Y+L  +D C+ Y W FPL+ KSDT +T  NF A V+ QFG  +KSVQ D G E
Sbjct: 461  VSVSGYKYYLVILDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGRE 520

Query: 812  F--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAF 869
            F   P  + F   G+  R++CP+T  QNG  ER  R +     +LL  A +P  +W  A 
Sbjct: 521  FDNSPARTFFLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEAL 580

Query: 870  LAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKEC 929
              AT L+NR+ T TL  ++PYF LY   P +  L+VFG AC+P +     +KL+  S  C
Sbjct: 581  HTATLLVNRIPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLC 640

Query: 930  VFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFPTDHSSSS----------- 977
            VF+GYS  HKGY+CL+  S RI  S+ V+F E  FP+  +  +  +SS+           
Sbjct: 641  VFLGYSSEHKGYRCLELGSNRIITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNELT 700

Query: 978  ----SAEFYPLSTIPIISHTAPPSSPVLAAS--GHSSP----GPQDSPQQQQP------- 1020
                 A+F    T         PS+P  A S  G  SP    GP+  P    P       
Sbjct: 701  AQPPRAKFVHAGTSSAARGAVEPSTPPPAPSSIGPRSPATLAGPEAGPHGGSPAGAATSQ 760

Query: 1021 -----PSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPP------------- 1062
                 P+ T +    +++T AV S P  ++S  +   S     AAPP             
Sbjct: 761  PGAISPARTAAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAASSTAAT 820

Query: 1063 ------------VIVNTHPMQTRAKNGIVKPRLQPTLLLTHLEPT--SVKQAMKDAKWYK 1108
                         + N H M+TR K G+ +P  +  L    L P   SV++A+ D  W  
Sbjct: 821  GRTLATRPVSIAPVDNAHSMRTRGKAGMAQPVDRLNLHAAPLSPVPRSVREALSDPNWRA 880

Query: 1109 AMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
            AMQ E+ AL+ N TW+LVP P     V  KWI+R K + DGS+++YKAR V +G++Q  G
Sbjct: 881  AMQAEFDALLANDTWSLVPRPRGVNLVTGKWIFRHKLHSDGSLDRYKARWVLRGFTQRPG 940

Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF-EHK 1227
             DY ETFSPVVKP TVR++LSLA+S+ WP+ QLDV NAFL+G L E VY +QP GF +  
Sbjct: 941  VDYDETFSPVVKPATVRVVLSLALSQDWPIHQLDVKNAFLHGTLSETVYCIQPTGFADPS 1000

Query: 1228 DKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYV 1287
              +LVC+L K+LYGLKQAPRAW HR    LI  GF  ++ D SLF +      + +L+YV
Sbjct: 1001 HADLVCRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLLLYV 1060

Query: 1288 DDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLL 1347
            DDI++T +S SL+QQ+ A L   FA+  +G L +FLG+ VT  ++G L L+Q +Y  D+L
Sbjct: 1061 DDIVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASG-LFLSQRQYSQDIL 1119

Query: 1348 TKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVC 1407
             +  M +    STP+    KLS  +G  + D T+YRS+ GALQY T TRP+I+FAV +VC
Sbjct: 1120 ERAGMGECKPCSTPVDVHSKLSA-DGPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQVC 1178

Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
             +M  P E H  A+KRILRY++GTL+ G+ ++    + P  L+ Y DADW   PD RRST
Sbjct: 1179 LYMHDPREPHLAALKRILRYIQGTLSLGLTMR---RSPPTDLVVYTDADWAGCPDTRRST 1235

Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTEL-KIPFTIPT 1526
            SG  VFLG NL+SW++K+Q  V+RSS EAEYR++AN  AE  W++ LL EL + P T   
Sbjct: 1236 SGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATV 1295

Query: 1527 VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALS 1586
            VYCDN+S + L+ NP+ H RTKH+E+D+ FVREKV    + V HVP+  Q AD+FTK L 
Sbjct: 1296 VYCDNVSAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLP 1355

Query: 1587 PTRFLLLKDKLNVVD 1601
             + F   +  L + D
Sbjct: 1356 TSLFQEFRTSLTISD 1370


>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
            cultivar-group)] gi|37530764|ref|NP_919684.1| putative
            copia-type polyprotein [Oryza sativa (japonica
            cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
            copia-type polyprotein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1803

 Score =  714 bits (1842), Expect = 0.0
 Identities = 526/1630 (32%), Positives = 762/1630 (46%), Gaps = 296/1630 (18%)

Query: 5    SSSPSMPSSSSSSSLSQAFSHK----LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPP 60
            S+S   P  + S+S+ Q  + +    + + LD SN+  W+   E V+    L+  VQ+PP
Sbjct: 12   STSDEEPVPAPSTSVLQTVNIRSHVPVVLDLDVSNYSQWRCSFESVLGKFGLEAHVQEPP 71

Query: 61   MIPEKFLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEI 120
             +  +                A+W + D  +  WL ++    I  NV   V+        
Sbjct: 72   ALDLRT---------------AEWRRADHCVVNWLHNS----IAKNVFDVVY-------- 104

Query: 121  HSFFNAKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIF 180
                  K RA +  + ++++ +                             FRD+     
Sbjct: 105  ------KPRASAFTVWSDIEGV-----------------------------FRDN----- 124

Query: 181  DGLSEEYSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNS 240
                    A+   +Y +T + +I++ +  +  + A+      KQLAD    + +  ++ S
Sbjct: 125  --------AVQRSVYLETEFRSINQGDMTITQYTAKL-----KQLADGLRDINMPVSEPS 171

Query: 241  P---------------SSSTAPAPPPPQAMWTQPAPAPSSTMAQPPATSVA-PSQPVDTA 284
                             +S A   PP   M  +     +    Q  A + A  +    T 
Sbjct: 172  QVLNLLRGLNTKFRSLRASIADRNPPHTFMTARSYLLLAELQMQHDAKAEAGEALYAGTG 231

Query: 285  VDSGYGNRDEQNRNSGGYGRGRGRGRGRNVQCTYCSKWGHDAASCWSRPSGVSSNANSSA 344
              SG  +   Q R  G   RG+ RGRG                     P G  S     A
Sbjct: 232  SSSGTSDTTGQPRPKG---RGKRRGRGGGAP-----------------PGGAPSTPGGGA 271

Query: 345  NSAQSGNSGSNFSVPGVNLGFSPMQFGGFPSMANFGF-----------PPYAPYNSMLPQ 393
             +   G        P    G++P  + GF     F F           PP+    +M  Q
Sbjct: 272  GAGHDGQPR-----PPAPWGYNP--WTGFVQAWPFPFRAPGAGVLGPRPPFQAQQAMTAQ 324

Query: 394  YGSSVLSPSSMPPWSPWCIPPTPYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQF 453
            +    L P+ +PP SP       + ++     +Q+AG++   P                 
Sbjct: 325  H----LLPA-LPPASPGVHSTGAWDNSALYSALQSAGVATTTP----------------- 362

Query: 454  PRPPQQQVSTGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQL 513
                                      S   W  D+GA+ H+++ PGI     P      +
Sbjct: 363  -------------------------PSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCI 397

Query: 514  LVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFH 573
             VGNG  LP+    S  +P+S   +  L L  +L+ P + KNL+SV +  RDNNV   F 
Sbjct: 398  TVGNGAKLPVTHTASTHIPTS---STDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFD 454

Query: 574  ANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANK 633
                S+    T  + L                      P    PL               
Sbjct: 455  PTGFSIKDLQTQVVKLR------------------CDSPGDLYPLRL------------- 483

Query: 634  ASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVL 693
              P+    SAT SP V                             + WH RLGHP    L
Sbjct: 484  --PSPHALSATSSPSV-----------------------------EHWHLRLGHPGSASL 512

Query: 694  KQTLSLCNISVPSNKSVFSFCKACCLSKLHRLP--SSSSNTVYNTPFELVFADLWGPASL 751
             + L   +     NKS    C AC +    RLP  SSSS T++  PF+LV  D+W  + +
Sbjct: 513  SKVLG--SFDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLF--PFQLVHTDVW-TSPI 567

Query: 752  ESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGE 811
             S+ G+ Y++  +D  T Y W FP++ KS+   T  +F A    QFG  + ++QTD G E
Sbjct: 568  YSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKE 627

Query: 812  FKP--LTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAF 869
            +    L S     G + RL+CP++  QNG  ER  R I +    +L H++ PL FW  A 
Sbjct: 628  YDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLSFWAEAL 687

Query: 870  LAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKEC 929
              A +LINR          PY  L G  P +  L+VFG  C+P       +KLS  S  C
Sbjct: 688  QTAMHLINRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLAC 747

Query: 930  VFIGYSINHKGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIP 988
            VFIGY  +H+GY+C D  S R++ S+ V F E  FP+    P+   S+     +   TI 
Sbjct: 748  VFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDA-PSPRPSAPPPPDHGDDTIV 806

Query: 989  IISHTAPPS-SPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPA--VVSPPVPSS 1045
            ++   A    +PV  A  H +  P        P S+T     PS++ PA  V  PP P +
Sbjct: 807  LLPAPAQHVVTPVGTAPAHDAASPPS------PASST-----PSSAAPAHDVAPPPSPET 855

Query: 1046 SAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMK 1102
            S        S  +A+PP     H M TRA+ GI KP  +  +  T      P+SV+ A++
Sbjct: 856  S--------SPASASPP----RHAMTTRARAGISKPNPRYAMTATSTLSPTPSSVRVALR 903

Query: 1103 DAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKG 1162
            D  W  AMQ E+ AL+ N TWTLVP P     +  KW+++ K + DGS++KYKAR V +G
Sbjct: 904  DPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRG 963

Query: 1163 YSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPP 1222
            ++Q  G D+ ETFSPVVKP T+R +L+L  S+ WP  QLDV+NAFL+G L+E V   QP 
Sbjct: 964  FNQRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPT 1023

Query: 1223 GFEHKDKNL-VCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCI 1281
            GFE   +   VC L ++LYGL+QAPRAWF R  +     GF  S+ DPSLF         
Sbjct: 1024 GFEDAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTA 1083

Query: 1282 YMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTK 1341
            Y+L+YVDD+I++ +S SL+Q++  +L + F +K +G L YFLG++V   ++G  +L+Q+K
Sbjct: 1084 YLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSK 1142

Query: 1342 YISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISF 1401
            Y +D+L +  M +  A++TP     KLS +EG   +D + YRS+ GALQY T+TRP+I++
Sbjct: 1143 YATDVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAY 1202

Query: 1402 AVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDP 1461
            AV +VC  M  P E H   +KRILRY+KGT   G+ L+  + T P  L A+ DADW   P
Sbjct: 1203 AVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLR--ASTSP-TLTAFSDADWAGCP 1259

Query: 1462 DDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIP 1521
            D RRSTSG C+FLG +LISW++K+Q+ V+RSS EAEYR +AN  AE  W++ LL EL   
Sbjct: 1260 DTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCR 1319

Query: 1522 FTIPTV-YCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADI 1580
                T+ YCDN+S+V ++ NP+ H RTKH+E+DI FVREKV    L V  +PS HQ AD+
Sbjct: 1320 VPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADV 1379

Query: 1581 FTKALSPTRF 1590
            FTK L  + F
Sbjct: 1380 FTKGLPSSMF 1389


>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  709 bits (1829), Expect = 0.0
 Identities = 428/1162 (36%), Positives = 625/1162 (52%), Gaps = 113/1162 (9%)

Query: 458  QQQVSTGMHPQAMLATVPA---HHSSPVT---WCPDSGATHHVTNNPGIFVDHVPSSSQE 511
            Q Q    + PQAM A+      H SS ++   W  DSGA+HH++ +   F    P SS  
Sbjct: 310  QFQKFLSLQPQAMSASSIGQLPHSSSGISHSEWVLDSGASHHMSPDSSSFTSVSPLSSIP 369

Query: 512  QLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFS 571
             ++  +G  +P+  +GS +       T  L L  + L+P +  NL S+ +     +    
Sbjct: 370  -VMTADGTPMPLAGVGSVV-------TLHLSLPNVYLIPKLKLNLASIGQICDSGDYLVM 421

Query: 572  FHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAA 631
            F  + C V    + +L+ TG   ++GLY  D                             
Sbjct: 422  FSGSFCCVQDLQSQKLIGTGR-RENGLYILD----------------------------- 451

Query: 632  NKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHD 691
                           P+V         V++T  DL         S + LWHSRLGH    
Sbjct: 452  -----------ELKVPVV---------VAATTVDLSFFRLSLSSSSFYLWHSRLGHVSSS 491

Query: 692  VLK---QTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGP 748
             L+    T +L N+         S C  C L+K   LP + S +V ++PF+L+ +D+WGP
Sbjct: 492  RLRFLASTGALGNLKTCD----ISDCSGCKLAKFSALPFNRSTSVSSSPFDLIHSDVWGP 547

Query: 749  ASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDG 808
            + + +  G  Y+++ +D  T+Y WV+ +K +S+    +  F+A+++ Q    +K  + D 
Sbjct: 548  SPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQHSAVIKCFRCDL 607

Query: 809  GGEFKPLTSHFQKL----GIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQF 864
            GGE+   ++ F ++    G IH+ +C  T  QNG  ERKHRHIVET  +LL  A +  +F
Sbjct: 608  GGEYT--SNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIVETARSLLLSAFVLSEF 665

Query: 865  WDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSL 924
            W  A L A  LIN + ++   G SP+ KLYG  PD+ S +VFG   F        NKLS 
Sbjct: 666  WGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDYSSFRVFGCTYFVLHPHVERNKLSS 725

Query: 925  HSKECVFIGYSINHKGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYP 983
             S  CVF+GY    KGY+C D  + ++Y+S  V+F EH                     P
Sbjct: 726  RSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLEH--------------------IP 765

Query: 984  LSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVP 1043
              +IP  +H+   S  +     H  P  +DS     P   ++   + + +   +   P  
Sbjct: 766  FFSIPSTTHSLTKSDLI-----HIDPFSEDSGNDTSPYVRSICTHNSAGTGTLLSGTPEA 820

Query: 1044 SSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL----EPTSVKQ 1099
            S S+ +   S+ +V   P   +                    T  L ++    EP+S K+
Sbjct: 821  SFSSTAPQASSEIVDPPPRQSIRIRKSTKLPDFAYSCYSSSFTSFLAYIHCLFEPSSYKE 880

Query: 1100 AMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLV 1159
            A+ D    +AM EE +AL    TW LVPLP  ++ VGC+W+Y+IK N DGSI +YKARLV
Sbjct: 881  AILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKTNSDGSIERYKARLV 940

Query: 1160 AKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMV 1219
            AKGYSQ  G DY ETF+P+ K  T+R ++++A  R W + QLDV NAFLNG L+EEVYM 
Sbjct: 941  AKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVKNAFLNGDLQEEVYMA 1000

Query: 1220 QPPGFEHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQG 1279
             PPG  H D   VCKL+KALYGLKQAPRAWF +   V+   GF +S  D +LF   +  G
Sbjct: 1001 PPPGISH-DSGYVCKLKKALYGLKQAPRAWFEKFSIVISSLGFVSSSHDSALFIKCTDAG 1059

Query: 1280 CIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQ 1339
             I + +YVDD+IITG  +  I  L  +L   F +K LG L YFLG++V +   G  LL+Q
Sbjct: 1060 RIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGIEVAYSPRG-YLLSQ 1118

Query: 1340 TKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEI 1399
            +KY++++L +  + D   + TP++   + S ++G  L DPT YR++VG+L Y TIT P+I
Sbjct: 1119 SKYVANILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIVGSLVYLTITHPDI 1178

Query: 1400 SFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGS 1459
            ++AV+ V QF+A P   HW AV RILRYL+GT+   +LL   S T  L L AY DAD GS
Sbjct: 1179 AYAVHVVSQFVASPTTIHWAAVLRILRYLRGTVFQSLLL---SSTSSLELRAYSDADHGS 1235

Query: 1460 DPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELK 1519
            DP DR+S +G C+FLG +LISW +KKQS+V++SSTEAEY ++A+TT E++W + LL ++ 
Sbjct: 1236 DPTDRKSVTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKEIVWSRWLLADMG 1295

Query: 1520 IPFT-IPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKA 1578
            I F+ +  +YCDN S++ + HN + H RTKH+E+D    R  ++  ++ +  VPS  Q A
Sbjct: 1296 ISFSHLTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIALPFVPSSLQIA 1355

Query: 1579 DIFTKALSPTRFLLLKDKLNVV 1600
            D FTKA S +RF  L  KL+++
Sbjct: 1356 DFFTKAHSISRFCFLVGKLSML 1377



 Score = 52.4 bits (124), Expect = 1e-04
 Identities = 40/220 (18%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 27  LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFAD-WE 85
           +S++LD  N+  W   +   ++  K+  +V    ++P        K TE  + +  D WE
Sbjct: 12  VSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVVP--------KNTEEGDTVSIDTWE 63

Query: 86  QQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKG 145
             ++ + TW+ + +  +I   + +   + +VW+ +   F   + A+  QL N+++ + + 
Sbjct: 64  ANNAKIITWINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQK 123

Query: 146 TKTASEFLQRIKTIVNTLA--------SIGEPVTFRD--HLEAIFDGLSEEYSALMTVIY 195
             +  EF   +  + + LA        + G  +  R+   L      L  ++  L   I 
Sbjct: 124 NMSIQEFYSAMTDLWDQLALTESVELKACGAYIERREQQRLVQFLTALRSDFEGLRGSIL 183

Query: 196 NQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLA 235
           +++   ++  V + +++ E R     +K +   ++   LA
Sbjct: 184 HRSPLPSVDSVVSELLAEEIRLQSYSEKGILSASNPSVLA 223


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  708 bits (1828), Expect = 0.0
 Identities = 426/1085 (39%), Positives = 609/1085 (55%), Gaps = 82/1085 (7%)

Query: 574  ANHCSVHHQDTYELLLTGTVGDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLA 626
            A+   + +  TYE       G+D +   DG   P+T   S   SSS    PL+ +  C A
Sbjct: 336  ASTSGLQNATTYE-------GNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPA 388

Query: 627  SKSA------------------ANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVS 668
             + +                  ANK    IDL +  V    P NN   +  +S    L S
Sbjct: 389  IQKSLLSVSKLCDDYPCGVYFDANKVC-IIDLTTQKVVSKGPRNNGLYMLENSEFVALYS 447

Query: 669  CNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPS 727
             N     S+ + WH RLGH +  +L+Q L+   I V  NKS  S  C+ C + K  RL  
Sbjct: 448  -NRQCAASM-ETWHHRLGHSNSKILQQLLTRKEIQV--NKSRTSPVCEPCQMGKSTRLQF 503

Query: 728  SSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFI 787
             SS+     P + V  DLWGP+ + S+ GF Y+   VD  ++++W FPL+ KS   + FI
Sbjct: 504  FSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFI 563

Query: 788  NFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHR 845
             +Q +VE Q G K+K  Q+DGGGEF    L  HF++ GI HR++CP+T  QNG  ERKHR
Sbjct: 564  AYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHR 623

Query: 846  HIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKV 905
            H+VE GL++L H+  PL+FW  AF  A YL N + ++ L+  SPY  L+ Q  D+  L+V
Sbjct: 624  HLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRV 683

Query: 906  FGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFP 964
            FG+AC+P LRP   NK    S +CVF+GY   +KGY+CL   +G++YIS+ V+F E +FP
Sbjct: 684  FGTACYPCLRPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFP 743

Query: 965  YPILFPTDHSSSSSAEFYPLSTIPIISHT--APPSSPVLAASGHSSPGPQDSPQQQQPPS 1022
            +           S    Y  + +    HT   PPS P        S   Q   +Q  P +
Sbjct: 744  F------KEKYHSLVPKYQTTLLQAWQHTDLTPPSVP--------SSQLQPLARQMTPMA 789

Query: 1023 ATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPV--------------IVNTH 1068
             + +    +  T   V+  + +SS +  +++        PV              + N H
Sbjct: 790  TSENQPMMNYETEEAVNVNMETSSDEETESNDEFDHEVAPVLNDQNEDNALGQGSLENLH 849

Query: 1069 PMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTL 1125
            PM TR+K+GI KP  +  L+++     EP ++  AMK   W  A+ +E   +    TW+L
Sbjct: 850  PMITRSKDGIQKPNPRYALIVSKSSFDEPKTITTAMKHPSWNAAVMDEIDRIHMLNTWSL 909

Query: 1126 VPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVR 1185
            VP   +   +  KW+++ K  PDG+I+K KARLVAKG+ Q +G DY ETFSPVV+  T+R
Sbjct: 910  VPATEDMNILTSKWVFKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIR 969

Query: 1186 LILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQ 1244
            L+L  A +  WPL+QLDV+NAFL+G L+E V+M QP GF   +K N VC+L KALYGLKQ
Sbjct: 970  LVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQ 1029

Query: 1245 APRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLT 1304
            APRAWF      L+ FGF+ S  DPSLF  + +   + +L+YVDDI++TG+   L+ +L 
Sbjct: 1030 APRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLL 1089

Query: 1305 AQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQC 1364
              L++ F++K LG   YFLG+++   +NG L L+Q  Y SD+L +  M +   + TP+  
Sbjct: 1090 QALNNRFSMKDLGPPRYFLGIEIESYNNG-LFLHQHAYASDILHQAGMTECNPMPTPLP- 1147

Query: 1365 GVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRI 1424
               L        ++PT +RS+ G LQY TITRP+I +AVN +CQ M  P    +  +KRI
Sbjct: 1148 -QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRI 1206

Query: 1425 LRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAK 1484
            LRY+KGT+  G+   P        L  +CD+D+    D RRST+G C+ LG  LISW+AK
Sbjct: 1207 LRYVKGTINMGL---PIRKHHNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAK 1263

Query: 1485 KQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPIL 1543
            +Q  ++ SSTEAEYR+L++T  E+ W+ SLL +L I    PT V+CDN+S V L+ NP L
Sbjct: 1264 RQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPAL 1323

Query: 1544 HTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVDKQ 1603
            H R+KH + D  ++RE+V    +  QH+P+  Q AD+FTK+L    F+ L+ KL V    
Sbjct: 1324 HKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGVSASP 1383

Query: 1604 VLLSP 1608
            V  +P
Sbjct: 1384 VSPTP 1388



 Score =  117 bits (294), Expect = 2e-24
 Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 47/320 (14%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQD--PPMIPEKFLTEEDKITENVNPLF 81
           S  +++KL+DSN+  WK Q E ++ S KL  FV     P    + +  +D  +E  NP +
Sbjct: 14  SSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQY 73

Query: 82  ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
            DW   D L+ +WL  TLS  +L +V     S Q+W  +   FN  S A+   LR  L+ 
Sbjct: 74  EDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQL 133

Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYF 201
           +TK  K+ S + +  K I ++L+SIG+PV     +    +GL  EY  + TVI +  +  
Sbjct: 134 LTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVIQSSLSKL 193

Query: 202 TISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQPAP 261
                   VIS    FD   K Q  D T +V    A N+  S++              AP
Sbjct: 194 PAPTFND-VISEVQGFD--SKLQSYDDTVSVNPHLAFNTERSNSG-------------AP 237

Query: 262 APSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRGRGR--------GR 312
             +S                    +S    R  QNR  GGY  RGRG  +        G+
Sbjct: 238 QYNS--------------------NSRGRGRSGQNRGRGGYSTRGRGFSQHQSASPSSGQ 277

Query: 313 NVQCTYCSKWGHDAASCWSR 332
              C  C + GH A  C++R
Sbjct: 278 RPVCQICGRIGHTAIKCYNR 297



 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           W PDS AT H+T +     +       + +LVG+G  LPI  +GS  + SS     ++ L
Sbjct: 324 WYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISSS---KGTIPL 380

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFD 602
            ++L+ P+I K+L+SVS+   D      F AN   +    T +++  G   ++GLY  +
Sbjct: 381 NEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGP-RNNGLYMLE 438


>emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|3269282|emb|CAA19715.1|
            putative protein [Arabidopsis thaliana]
            gi|7444417|pir||T05745 hypothetical protein M4I22.20 -
            Arabidopsis thaliana
          Length = 1318

 Score =  708 bits (1827), Expect = 0.0
 Identities = 398/954 (41%), Positives = 539/954 (55%), Gaps = 79/954 (8%)

Query: 679  DLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPF 738
            ++WH RLGHPH  +L+                                          P 
Sbjct: 310  EVWHRRLGHPHPQILQ------------------------------------------PL 327

Query: 739  ELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFG 798
            E V  DLWGP ++ S  GF Y+   +D  ++++W++PLK KSD    F+ F  +VE Q  
Sbjct: 328  ERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLS 387

Query: 799  HKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLS 856
             K+   Q DGGGEF       H Q  GI  +L+CPHT  QNG  ERKHRH+VE GL++L 
Sbjct: 388  QKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLF 447

Query: 857  HASMPLQFWDHAFLAATYLINRMSTTTL-QGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
             + +P +FW  AF  A +LIN + T+ L +  SPY KLY + PD+ SL+ FGSACFP LR
Sbjct: 448  QSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLR 507

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPY--------- 965
             Y  NK +  S +CVF+GY+  +KGY+CL   +GR+YIS+ V+F E  +P+         
Sbjct: 508  DYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHP 567

Query: 966  ----PILF--------PTDHSSSSSAEFYPLST---IPIISHTAPPSSPVLAASGHSSPG 1010
                P+L         P   +S+S +   PL T    P +     P  P L      S  
Sbjct: 568  QPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHA 627

Query: 1011 PQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPM 1070
               + QQ     +  + D  S S           S ++     ASV         N HPM
Sbjct: 628  SNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPM 687

Query: 1071 QTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVP 1127
             TRAK GI KP  +   L   +++ EP +V  A+K   W  AM EE        TW+LVP
Sbjct: 688  VTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVP 747

Query: 1128 LPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLI 1187
              ++   +G KW++R K + DG++NK KAR+VAKG+ Q +G DY ET+SPVV+  TVRL+
Sbjct: 748  YKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLV 807

Query: 1188 LSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAP 1246
            L LA +  W ++Q+DV NAFL+G L+E VYM QP GF    K + VC L K++YGLKQ+P
Sbjct: 808  LHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSP 867

Query: 1247 RAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQ 1306
            RAWF +    L+ FGF  SK DPSLF Y  +   I +L+YVDD++ITG S   +  L A 
Sbjct: 868  RAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAA 927

Query: 1307 LHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGV 1366
            L+  F +  +GQL YFLG+QV    NG L ++Q KY  DLL   +M     + TP+   +
Sbjct: 928  LNKEFRMTDMGQLHYFLGIQVQRQQNG-LFMSQQKYAEDLLIAASMEHCTPLPTPLPVQL 986

Query: 1367 KLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILR 1426
                ++     DPT +RS+ G LQY T+TRP+I FAVN VCQ M QP    +  +KRILR
Sbjct: 987  DRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILR 1046

Query: 1427 YLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQ 1486
            Y+KGT+T GI     S   P  L AY D+DWG+    RRS  G C F+G NL+SW++KK 
Sbjct: 1047 YIKGTITMGI---SYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKH 1103

Query: 1487 SLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHT 1545
              V+RSSTEAEY+SL++  +E+LW+ +LL EL+IP    P ++CDN+S V LT NP  H 
Sbjct: 1104 PTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHA 1163

Query: 1546 RTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            RTKH ++D  FVRE+V  K+L+V+H+P   Q ADIFTK+L    F+ L+ KL V
Sbjct: 1164 RTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGV 1217



 Score = 69.7 bits (169), Expect = 8e-10
 Identities = 44/116 (37%), Positives = 64/116 (54%), Gaps = 4/116 (3%)

Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           W PDS AT HVTN+P       P    + ++V +G  LPI   GS  L SS   + ++ L
Sbjct: 177 WLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASS---SGTVPL 233

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLY 599
             +L+ PSITK+L+S+S+  +D      F  +   V+ + T +LLL G+   DGLY
Sbjct: 234 TDVLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGS-NRDGLY 288



 Score = 50.4 bits (119), Expect = 5e-04
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 134 QLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTV 193
           +L+  L+N++K  KT   +L  +K I + LAS+G PVT +  + A  +GL  EY  + T 
Sbjct: 49  ELQRRLQNVSKRDKTMDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTT 108

Query: 194 IYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLA 235
           I N         +E  VI     +D   +  L +TT + ++A
Sbjct: 109 IENSMDTQPGPSLE-NVIPKLTGYDDRLQGYLEETTISPYVA 149


>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  707 bits (1824), Expect = 0.0
 Identities = 396/955 (41%), Positives = 566/955 (58%), Gaps = 54/955 (5%)

Query: 679  DLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPSSSSNTVYNTP 737
            ++WH RLGH +  +L+Q  S   IS   NKS  S  C+ C + K  +L   SSN+     
Sbjct: 457  EIWHHRLGHSNSRILQQLKSSKEISF--NKSRMSPVCEPCQMGKSSKLQFFSSNSRELDL 514

Query: 738  FELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQF 797
               +  DLWGP+ + S  GF Y++  VD  ++Y+W +PLK KSD  A F+ FQ +VE QF
Sbjct: 515  LGRIHCDLWGPSPVVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQF 574

Query: 798  GHKLKSVQTDGGGEFKP--LTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALL 855
              K+K  Q+DGGGEF    +  H    GI HR++CP+T  QNG  ERKHRH VE GL+++
Sbjct: 575  NTKIKVFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMM 634

Query: 856  SHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
             H+  PLQFW  AF  A++L N + + +L   SP   L  Q P++  L+VFG+AC+P LR
Sbjct: 635  FHSHTPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLR 694

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFP----YPILFP 970
            P   +K    S +CVF+GY+  +KGY+CL   +GR+YIS+ V+F E  FP    Y  L P
Sbjct: 695  PLGEHKFEPRSLQCVFLGYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPFKQKYQFLVP 754

Query: 971  TDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDP 1030
               SS  SA     S+IP    +  P +           G  +S    +PPS   +    
Sbjct: 755  QYESSLLSAW---QSSIPQADQSLIPQA---------EEGKIES--LAKPPSIQKNTIQD 800

Query: 1031 STSTPAVVSPPV-------------------PSSSAQSADTSASVVAAAPPVIVNTHPMQ 1071
            +T+ PA+++  V                     +  Q+ +   +V         NTHPM 
Sbjct: 801  TTTQPAILTEGVLNEEEEEDSFEETETESLNEETHTQNDEAEVTVEEEVQQEPENTHPMT 860

Query: 1072 TRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPL 1128
            TR+K GI K   +  LL +     EP S+ +A+    W  A+ +E   +    TW+LV  
Sbjct: 861  TRSKAGIHKSNTRYALLTSKFSVEEPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQP 920

Query: 1129 PANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLIL 1188
              +   +GC+W+++ K  PDGS++K KARLVAKG+ Q +G DY ETFSPVV+  T+RL+L
Sbjct: 921  TEDMNILGCRWVFKTKLKPDGSVDKLKARLVAKGFHQEEGLDYLETFSPVVRTATIRLVL 980

Query: 1189 SLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPR 1247
             +A ++GW ++QLDV+NAFL+G L+E VYM+QPPGF  ++K + VC+L KALYGLKQAPR
Sbjct: 981  DVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPR 1040

Query: 1248 AWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQL 1307
            AWF  +   L+ FGF  SK DPSLFTY+ +   + +L+YVDDI++TG+  +L+Q+L   L
Sbjct: 1041 AWFDTISNYLLDFGFSCSKSDPSLFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSL 1100

Query: 1308 HSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVK 1367
            +  F++K LG   YFLGV++     G L L+QT Y  D+L +  M +  ++ TP+   ++
Sbjct: 1101 NKRFSMKDLGAPSYFLGVEIESSPEG-LFLHQTAYAKDILHQAAMSNCNSMPTPLPQHIE 1159

Query: 1368 LSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRY 1427
               ++     +PT +RS+ G LQY TITRP+I FAVN +CQ M  P    +  +KRILRY
Sbjct: 1160 NLNSD--LFPEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTADFGLLKRILRY 1217

Query: 1428 LKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQS 1487
            +KGT+  G+ ++     + L L+AY D+DW    + RRST+G C  LG NLISW+AK+Q 
Sbjct: 1218 VKGTIHLGLHIK---KNQNLSLVAYSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQE 1274

Query: 1488 LVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTR 1546
             V++SSTEAEYR+L     EL W+  LL ++ +  T PT V CDN+S V L+ NP LH R
Sbjct: 1275 TVSKSSTEAEYRALTAVAQELTWLSFLLRDIGVTQTHPTLVKCDNLSAVYLSANPALHNR 1334

Query: 1547 TKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVD 1601
            +KH + D  ++RE+V    +  +H+ +  Q ADIFTK L    F+ L+ KL V +
Sbjct: 1335 SKHFDTDYHYIREQVALGLVETKHISATLQLADIFTKPLPRRAFIDLRIKLGVAE 1389



 Score =  100 bits (249), Expect = 4e-19
 Identities = 88/322 (27%), Positives = 128/322 (39%), Gaps = 50/322 (15%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLT--EEDKITENVNPLF 81
           S  +++KL+DSN+  WK Q E ++  HKL  FV      P + L     D   +  NP +
Sbjct: 14  SSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANPQY 73

Query: 82  ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
             W   D L+ +WL  TLS  +L  V     S  +W  +   FN  S A+   LR  L+ 
Sbjct: 74  ESWFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTLQL 133

Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYF 201
           ++K  KT S + +    + + L+SIG+PV     +    +GL  EY  + TVI       
Sbjct: 134 LSKKDKTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVI------- 186

Query: 202 TISEVEAMVISHEARFDRMRKKQLADTTSAV--FLAQAQNSPSSSTAPAPPPPQAMWTQP 259
                       ++   ++      D  S V  F  + Q+   S TA    P  A  TQ 
Sbjct: 187 ------------QSSLSKISPPTFRDVISEVKGFDVKLQSYEESVTA---NPHMAFNTQR 231

Query: 260 APAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRG--------RGR 310
           +    +  +                   GYG    QNR   GY  RGRG           
Sbjct: 232 SEYTDNYTSGNRGKG-----------RGGYG----QNRGRSGYSTRGRGFSQHQTNSNNT 276

Query: 311 GRNVQCTYCSKWGHDAASCWSR 332
           G    C  C + GH A  C++R
Sbjct: 277 GERPVCQICGRTGHTALKCYNR 298



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 479 SSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPT 538
           SS   W PDS AT HVT++        P +  + +LVG+G  LPI  +GS  + S    +
Sbjct: 320 SSGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGSTTISSD---S 376

Query: 539 ASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGL 598
            +L L ++L+ P I K+L+SVS+   D      F AN   +   +T +++  G    +GL
Sbjct: 377 GTLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKVCIIDINTQKVVSKGP-RSNGL 435

Query: 599 YYFD 602
           Y  +
Sbjct: 436 YVLE 439


>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1090

 Score =  699 bits (1805), Expect = 0.0
 Identities = 421/1003 (41%), Positives = 567/1003 (55%), Gaps = 63/1003 (6%)

Query: 639  DLQSATVSPIVPCNNADSVNV------SSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDV 692
            DLQ+  V  I+ CN+   +        SS    L++ +S        LWH RLGHP    
Sbjct: 86   DLQTRRV--ILRCNSRGELYTLPAATPSSAAHGLLATSS-------TLWHCRLGHPGPAA 136

Query: 693  LKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLE 752
            +    ++ +IS   NK   S C AC L K  RLP  +S++  + PFELV  D+W  + + 
Sbjct: 137  IHGLRNIASISC--NKIDTSLCHACQLGKHTRLPFHNSSSRTSVPFELVHCDVW-TSPVM 193

Query: 753  SSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF 812
            S+ GF Y+L  +D  + + W F L+ KSD     + F   V  QFG  LKS Q D G EF
Sbjct: 194  STSGFKYYLVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREF 253

Query: 813  --KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFL 870
                +T+     G   RL+CP+T  QNG  ER  R I  +   LL  ASMP  +W  A  
Sbjct: 254  VNTAITTFLASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALA 313

Query: 871  AATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECV 930
             ATYL+NR  ++++  + P+  L+   PDF  L+VFG  C+P L     +KLS  S  CV
Sbjct: 314  TATYLLNRRPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACV 373

Query: 931  FIGYSINHKGYKCLDQSG-RIYISKDVLFHEHRFPYPI--------------LFPTDHSS 975
            F+GY  +HKGY+CLD S  RI IS+ V+F E +FP+                L P D  S
Sbjct: 374  FLGYPTSHKGYRCLDLSTHRIIISRHVVFDESQFPFAATPPAASSFDFLLQGLSPADAPS 433

Query: 976  SSSAEFYPLSTIPIISHTAPPSS-PVLAASGHSSPGPQDSPQQQQPPSATLSAD--DPST 1032
                +  PL+  P      P    P    S  +     ++P    P   T SAD   P +
Sbjct: 434  LEVEQPRPLTVAPSTEVEQPYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGS 493

Query: 1033 STPA--VVSP--------PVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPR 1082
            +T A  +VSP        PV +    S+    + VAA  P     H M TR+++G ++P 
Sbjct: 494  ATRASTIVSPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQP-----HSMVTRSQSGSLRPV 548

Query: 1083 LQPTLLLTHLE----PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCK 1138
             + T   T       P +   A+ D  W  AM +EY  L++NGTW LV  P        K
Sbjct: 549  DRLTYTATQAAASPVPANYHSALADPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGK 608

Query: 1139 WIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPL 1198
            WI++ K + DGS+ +YKAR V +GYSQ  G DY ETFSPVVK  T+R++LS+A SR WP+
Sbjct: 609  WIFKHKFHSDGSLARYKARWVVRGYSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPI 668

Query: 1199 QQLDVNNAFLNGVLEEEVYMVQPPGF-EHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVL 1257
             QLDV NAFL+G L+E VY  QP GF +    + VC LQK+LYGLKQAPRAW+ R    +
Sbjct: 669  HQLDVKNAFLHGHLKETVYCQQPSGFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYI 728

Query: 1258 IRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLG 1317
             + GF  S  D SLF Y       Y+L+YVDDII+T ++ +L+QQLTA+LHS FA+  LG
Sbjct: 729  RQMGFMPSASDTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLG 788

Query: 1318 QLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALK 1377
             L +FLG+ V    +G L L+Q +Y  DLL +  M +  + STP+    KLS  +G  + 
Sbjct: 789  DLHFFLGISVKRSPDG-LFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVA 847

Query: 1378 DPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGIL 1437
            DP+ YRS+ GALQY T+TRP++++AV +VC FM  P E H   VKRILRY+KG+L+ G+ 
Sbjct: 848  DPSAYRSIAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLH 907

Query: 1438 LQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAE 1497
            +    +     L AY DADW   P+ RRSTSG CV+LG NL+SW++K+Q+ V+RSS EAE
Sbjct: 908  IGSGPIQ---SLTAYSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAE 964

Query: 1498 YRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFF 1556
            YR++A+  AE  W++ LL EL +P    T VYCDN+S V +T NP+ H RTKH+E+DI F
Sbjct: 965  YRAVAHAVAECCWLRQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHF 1024

Query: 1557 VREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            VREKV    + V +VPS HQ ADI TK L    F   +  L V
Sbjct: 1025 VREKVALGQVRVLYVPSSHQFADIMTKGLPVQLFTDFRSSLCV 1067


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|25301693|pir||F84480 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1402

 Score =  691 bits (1783), Expect = 0.0
 Identities = 420/1036 (40%), Positives = 569/1036 (54%), Gaps = 104/1036 (10%)

Query: 594  GDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLASKSAANKASPAIDLQSATVS 646
            G D +   DG   P+T   S   +SS    PL+ +  C           P+I     +VS
Sbjct: 357  GSDAVMVADGNFLPITHTGSTNLASSSGNVPLTDVLVC-----------PSITKSLLSVS 405

Query: 647  PIV---PCN---NADSVNVS-----------STVSDLVSCNSGSGISVY----------D 679
             +    PC    ++D V ++           ST   L      S    +          +
Sbjct: 406  KLTQDYPCTVEFDSDGVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDE 465

Query: 680  LWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFE 739
            +WH RLGHPH  VL+Q +   +IS+  NK+  S C+AC L K  RLP  SS+   N P E
Sbjct: 466  VWHRRLGHPHPQVLQQLVKTNSISI--NKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLE 523

Query: 740  LVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGH 799
             V  DLWGP+ + S  GF Y+   +D  ++++W++PLK KSD    F+ F  +VE Q  H
Sbjct: 524  RVHCDLWGPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNH 583

Query: 800  KLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSH 857
            K+   Q DGGGEF       H Q  GI   ++ PHT  QNG  ERKHRH+VE GL++L  
Sbjct: 584  KISVFQCDGGGEFVNHKFLQHLQNHGIQQHISYPHTPQQNGLAERKHRHLVELGLSMLFQ 643

Query: 858  ASMPLQFWDHAFLAATYLINRMSTTTLQGA-SPYFKLYGQYPDFKSLKVFGSACFPFLRP 916
            + +PL+FW  AF  A +LIN + T+ ++ A SPY KL+   PD+ +L+ FG ACFP +R 
Sbjct: 644  SKVPLKFWVEAFFTANFLINLLPTSAVEDAISPYEKLHQTTPDYTALRSFGCACFPTMRD 703

Query: 917  YNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPYPILFPTDHSS 975
            Y  NK    S +CVF+GY+  +KGY+CL   +GR+YIS+ V+F E  +P+   +   HS 
Sbjct: 704  YAMNKFDPRSLKCVFLGYNDKYKGYRCLYPPTGRVYISRHVIFDETAYPFSHHYKHLHSQ 763

Query: 976  SSSA---------EFYPLSTIPIISHTAPPS------SPVLAASGHSSPGPQDSPQQQQP 1020
             ++          E       P +S   PP       +P L  +    P P+ SPQ  Q 
Sbjct: 764  PTTPLLAAWFKGFESSVSQAPPKVSPAQPPQRKATLPTPPLFTAADFPPLPRRSPQLSQN 823

Query: 1021 PSATLSADDPSTST------PAVV-----------SPPVPSSSAQSA----DTSASVVAA 1059
             +A L    PST+T      PAVV           S  +  SS  S     DT   ++AA
Sbjct: 824  SAAAL-VSQPSTTTINSTHPPAVVNESSERTINFDSASIGDSSHSSQLLVDDTVEDLMAA 882

Query: 1060 ------APPVIVNTHPMQTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAM 1110
                  APP   NTHPM TRAK GI KP  +   L   +T+ EP +V  A+K   W  AM
Sbjct: 883  PVPTQQAPPP-TNTHPMITRAKVGITKPNPRYVFLSHKVTYPEPKTVTAALKHPGWTGAM 941

Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
             EE        TW+LVP   N   +G KW++R K + DG++NK KAR+VAK + Q +G  
Sbjct: 942  TEEMGNCSETNTWSLVPYTPNMHVLGSKWVFRTKLHADGTLNKLKARIVAKCFLQEEGIG 1001

Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK- 1229
            Y ET+SPVV+  TV+L+L LA +  W L+Q+DV NAFL+G L E VYM QP GF  K K 
Sbjct: 1002 YLETYSPVVRTPTVQLVLHLATALNWELKQMDVKNAFLHGDLNETVYMTQPAGFVDKSKP 1061

Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
              VC L K++YGLKQ+PRAWF +    L+ FGF  SK DPSLF Y  +   I +L+YVDD
Sbjct: 1062 THVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDD 1121

Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
            ++ITG S   +  L A L+  F +  +GQL YFLG+QV    +G L ++Q KY  DLL  
Sbjct: 1122 MVITGNSSQTLSSLLAALNKEFRMTDMGQLHYFLGIQVQRNQHG-LFMSQQKYAEDLLVA 1180

Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQF 1409
              M +   + TP+   +    ++     DPT +RS+ G LQY T+TRP+I FAVN VCQ 
Sbjct: 1181 SAMENCTPLPTPLPVQLDRVPHQEEPFTDPTYFRSIAGKLQYLTLTRPDIHFAVNFVCQK 1240

Query: 1410 MAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSG 1469
            M QP    +  +KRILRY+KGT+T GI     +   P  L AY D+DWG+    RRS  G
Sbjct: 1241 MHQPTMSDFHLLKRILRYIKGTITMGI---SYNQNSPTLLQAYSDSDWGNCKLTRRSVGG 1297

Query: 1470 SCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVY 1528
             C F+  NL+SW++KK   V+RSSTEAEYR+L++  +E+LW+ +LL EL IP    P ++
Sbjct: 1298 LCTFMATNLVSWSSKKHPTVSRSSTEAEYRTLSDAASEILWLSTLLRELGIPLPDTPELF 1357

Query: 1529 CDNMSTVLLTHNPILH 1544
            CDN+S V  T NP  H
Sbjct: 1358 CDNLSAVYHTANPAFH 1373



 Score =  103 bits (257), Expect = 5e-20
 Identities = 84/332 (25%), Positives = 134/332 (40%), Gaps = 64/332 (19%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEED---KITENVNPL 80
           S+ +++ L   N+  WK Q E  +    L  FV      P +     D     + + NP 
Sbjct: 12  SNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPNPE 71

Query: 81  FADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELK 140
           +  W + D ++ +WLL +    IL  V+ C  S++VW  + + FN  S ++  +L+  L+
Sbjct: 72  YYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRRLQ 131

Query: 141 NITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTY 200
           N++K  K+  E+L+ +KTI + LAS+G PVT +  + A  +GL  EY  + T I N    
Sbjct: 132 NVSKRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDA 191

Query: 201 FTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQPA 260
                +E ++       DR++           +L +   SP                   
Sbjct: 192 LPGPSLEDVIPKLTGYDDRLQG----------YLEETAVSPH------------------ 223

Query: 261 PAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRG----RGRG------- 309
                      A ++  S   D +  SGY N   + +     GR     RGRG       
Sbjct: 224 ----------VAFNITTS---DDSNASGYFNAYNRGKGKSNRGRNSFSTRGRGFHQQISS 270

Query: 310 ---------RGRNVQCTYCSKWGHDAASCWSR 332
                     G +V C  C K GH A  CW R
Sbjct: 271 TNSSSGSQSGGTSVVCQICGKMGHPALKCWHR 302



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 50/136 (36%), Positives = 75/136 (54%), Gaps = 7/136 (5%)

Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           W PDS AT HVTN+P       P    + ++V +G  LPI   GS  L SS   + ++ L
Sbjct: 332 WLPDSAATAHVTNSPRSLQQSQPYHGSDAVMVADGNFLPITHTGSTNLASS---SGNVPL 388

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYF-D 602
             +L+ PSITK+L+SVS+  +D      F ++   ++ + T +LL+ G+   DGLY   D
Sbjct: 389 TDVLVCPSITKSLLSVSKLTQDYPCTVEFDSDGVRINDKATKKLLIMGST-CDGLYCLKD 447

Query: 603 GPLTKA--SSQPQSSS 616
               KA  S++ QS+S
Sbjct: 448 DSQFKAFFSTRQQSAS 463


>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37534632|ref|NP_921618.1| putative pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1688

 Score =  680 bits (1755), Expect = 0.0
 Identities = 422/1178 (35%), Positives = 623/1178 (52%), Gaps = 125/1178 (10%)

Query: 464  GMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPI 523
            G+   + ++TV    S P  W  DSGA+ H++ +           +   +   NG    +
Sbjct: 166  GIASCSSISTVTPIASQP--WILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKV 223

Query: 524  QSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQD 583
               GS   P    P  SL       VP ++ NL+SV +   D N F  F    C V  + 
Sbjct: 224  THQGSISSPQFTVPNVSL-------VPKLSMNLISVGQLT-DTNCFVGFDDTSCFVQDRH 275

Query: 584  TYELLLTG--TVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQ 641
            T  ++ TG       GLY  D     + S P SS+   S+ + + S              
Sbjct: 276  TGAVIGTGHRQKRSCGLYILD-----SLSLPSSSTNTPSVYSPMCS-------------- 316

Query: 642  SATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCN 701
                                      +C S      +  WH RLGH     L   ++   
Sbjct: 317  -------------------------TACKS------FPQWHHRLGHLCGSRLATLINQGV 345

Query: 702  I-SVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYF 760
            + SVP + +    CK C L K  +LP  SS +  + PF+LV +D+WG +   S  G  Y+
Sbjct: 346  LGSVPVDTTFV--CKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGGHNYY 403

Query: 761  LTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQ 820
            +  VD  ++YTW++ +K +S   + + +F  M+  QF   ++  ++D GGE+  +++ F+
Sbjct: 404  VIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEY--MSNAFR 461

Query: 821  KL----GIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLI 876
            +     G + +L+CP  H QNG  ERKHRHI+ET   LL  + +P  FW  A   A YLI
Sbjct: 462  EFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTAVYLI 521

Query: 877  NRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSI 936
            N   +++LQG SP   L+G  P +  L+VFG  C+  L P    KL+  S ECVF+GYS+
Sbjct: 522  NMQPSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSL 581

Query: 937  NHKGYKCLDQSGR-IYISKDVLFHEHRFPYPILFPTDHSSSS---SAEFYPLSTIPIISH 992
             HKGY+C D S R I IS+DV F E++   P  + + +  SS   S  F  L  IP  S 
Sbjct: 582  EHKGYRCYDPSARRIRISRDVTFDENK---PFFYSSTNQPSSPENSISFLYLPPIP--SP 636

Query: 993  TAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPP---VPSSSAQ- 1048
             + PSSP+          P  SP     PS T     P + +P+ VSPP   +P+SS+  
Sbjct: 637  ESLPSSPIT---------PSPSPIPPSVPSPTYVPPPPPSPSPSPVSPPPSHIPASSSPP 687

Query: 1049 ------SADTSASVVAAAPPVIVNTHPMQT--------------------RAKNGIVKPR 1082
                  + DT     +  P +   + P Q                     RA++ +  P 
Sbjct: 688  HVPSTITLDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPN 747

Query: 1083 LQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYR 1142
                ++    EP++ ++A+    W  AM EE  AL    TW +VPLP++  P+ CKW+Y+
Sbjct: 748  RDDFVVGVVFEPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYK 807

Query: 1143 IKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLD 1202
            +K   DG + +YKARLVA+G+ Q  G DY ETF+PV    TVR ++++A +R W + Q+D
Sbjct: 808  VKTKSDGQVERYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMD 867

Query: 1203 VNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGF 1262
            V NAFL+G L EEVYM  PPG E    + V +L++ALYGLKQAPRAWF R   V++  GF
Sbjct: 868  VKNAFLHGDLHEEVYMHPPPGVEAPPGH-VFRLRRALYGLKQAPRAWFARFSSVVLAAGF 926

Query: 1263 QASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYF 1322
              S  DP+LF + SS+G   +L+YVDD++ITG  +  I  +  +L   F +  LG L YF
Sbjct: 927  SPSDHDPALFIHTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYF 986

Query: 1323 LGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEY 1382
            LG++VT   +G   L+Q +YI DLL +  + D+   +TPM+  V+L   +G+ L DP+ Y
Sbjct: 987  LGIEVTSTVDG-YYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRY 1045

Query: 1383 RSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCS 1442
            R +VG+L Y T+TRP+I++AV+ + QF++ P   H+  + R+LRYL+GT T  +     S
Sbjct: 1046 RHLVGSLVYLTVTRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASS 1105

Query: 1443 MTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLA 1502
               PL L A+ D+ W SDP DRRS +G C+FLG +L++W +KKQ+ V+RSSTEAE R+LA
Sbjct: 1106 ---PLQLRAFSDSTWASDPIDRRSVTGYCIFLGTSLLTWKSKKQTAVSRSSTEAELRALA 1162

Query: 1503 NTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKV 1561
             TT+E++W++ LL +  +   +PT + CDN   + + ++PI H  TKH+ +D  F R   
Sbjct: 1163 TTTSEIVWLRWLLADFGVSCDVPTPLLCDNTGAIQIANDPIKHELTKHIGVDASFTRSHC 1222

Query: 1562 QDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            Q  ++ + +VPSE Q AD FTKA +     L   KLNV
Sbjct: 1223 QQSTIALHYVPSELQVADFFTKAQTREHHRLHLLKLNV 1260


>gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H96650 protein
            T3P18.3 [imported] - Arabidopsis thaliana
          Length = 1309

 Score =  665 bits (1717), Expect = 0.0
 Identities = 421/1125 (37%), Positives = 602/1125 (53%), Gaps = 115/1125 (10%)

Query: 531  LPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLT 590
            L   ++P  ++I   L  +P+ T N V       D ++     A+   + +  TYE    
Sbjct: 175  LGREYDPITTVIQSSLSKLPAPTYNDVISEVQGFDTHIT----ASTSGLQNATTYE---- 226

Query: 591  GTVGDDGLYYFDG---PLTKASSQPQSSS----PLSSIQACLASKSA------------- 630
               G+D +   DG   P+T   S   SSS    PL+ +  C A + +             
Sbjct: 227  ---GNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPC 283

Query: 631  -----ANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRL 685
                 ANK    IDL +  V    P NN   +  +S    L S N     S+ + WH RL
Sbjct: 284  GVYFDANKVC-IIDLTTQKVVSKGPRNNGLYMLENSEFVALYS-NRQCAASM-ETWHHRL 340

Query: 686  GHPHHDVLKQTLSLCNISVPSNKSVFS-FCKACCLSKLHRLPSSSSNTVYNTPFELVFAD 744
            GH +  +L+Q L+   I V  NKS  S  C+ C + K  RL   SS+     P + V  D
Sbjct: 341  GHSNSKILQQLLTRKEIQV--NKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCD 398

Query: 745  LWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSV 804
            LWGP+ + S+                                   Q +VE Q G K+K  
Sbjct: 399  LWGPSPVVSN-----------------------------------QKLVENQLGTKIKEF 423

Query: 805  QTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPL 862
            Q+DGGGEF    L  HF++ GI HR++CP+T  QNG  ERKHRH+VE GL++L H+  PL
Sbjct: 424  QSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPL 483

Query: 863  QFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKL 922
            +FW  AF  A YL N + ++ L+  SPY  L+ Q  D+  L+VFG+AC+P LRP   NK 
Sbjct: 484  KFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKF 543

Query: 923  SLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEF 981
               S +CVF+GY   +KGY+CL   +G++YIS+ V+F E +FP+           S    
Sbjct: 544  DPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPF------KEKYHSLVPK 597

Query: 982  YPLSTIPIISHT--APPSSP-----------VLAASGHSSPGPQDSPQQQQPPSATLSAD 1028
            Y  + +    HT   PPS P              A+  + P      ++    +   S+D
Sbjct: 598  YQTTLLQAWQHTDLTPPSVPSSQLQPLARQVTPMATSENQPMMNYETEEAVNVNMETSSD 657

Query: 1029 DPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLL 1088
            + + S         P  + Q+ D      A     + N HPM TR+K+GI KP  +  L+
Sbjct: 658  EETESNDEFDHEVAPVLNDQNEDN-----ALGQGSLENLHPMITRSKDGIQKPNPRYALI 712

Query: 1089 LTHL---EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKE 1145
            ++     EP ++  AMK   W  A+ +E   +    TW+LVP   +   +  KW+++ K 
Sbjct: 713  VSKSSFDEPKTITTAMKHPGWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKL 772

Query: 1146 NPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNN 1205
             PDG+I+K KARLVAKG+ Q +G DY ETFSPVV+  T+RL+L  A +  WPL+QLDV+N
Sbjct: 773  KPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSN 832

Query: 1206 AFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQA 1264
            AFL+G L+E V+M QP GF   +K N VC+L KALYGLKQAPRAWF      L+ FGF+ 
Sbjct: 833  AFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFEC 892

Query: 1265 SKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLG 1324
            S  DPSLF  + +   + +L+YVDDI++TG+   L+ +L   L++ F++K LG   YFLG
Sbjct: 893  STSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLG 952

Query: 1325 VQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRS 1384
            +++   +NG L L+Q  Y SD+L +  M +   + TP+     L        ++PT +RS
Sbjct: 953  IEIESYNNG-LFLHQHAYASDILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRS 1009

Query: 1385 VVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
            + G LQY TITRP+I +AVN +CQ M  P    +  +KRILRY+KGT+  G+   P    
Sbjct: 1010 LAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGL---PIRKH 1066

Query: 1445 RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANT 1504
                L  +CD+D+    D RRST+G C+ LG  LISW+AK+Q  ++ SSTEAEYR+L++T
Sbjct: 1067 HNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDT 1126

Query: 1505 TAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQD 1563
              E+ W+ SLL +L I    PT V+CDN+S V L+ NP LH R+KH + D  ++RE+V  
Sbjct: 1127 AREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVAL 1186

Query: 1564 KSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVDKQVLLSP 1608
              +  QH+P+  Q AD+FTK+L    F+ L+ KL V    V  +P
Sbjct: 1187 GLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGVSASPVSPTP 1231



 Score =  103 bits (258), Expect = 4e-20
 Identities = 60/173 (34%), Positives = 91/173 (51%), Gaps = 2/173 (1%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQD--PPMIPEKFLTEEDKITENVNPLF 81
           S  +++KL+DSN+  WK Q E ++ S KL  FV     P    + +  +D  +E  NP +
Sbjct: 14  SSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQY 73

Query: 82  ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
            DW   D L+ +WL  TLS  +L +V     S Q+W  +   FN  S A+   LR  L+ 
Sbjct: 74  EDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQL 133

Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVI 194
           +TK  K+ S + +  K I ++L+SIG+PV     +    +GL  EY  + TVI
Sbjct: 134 LTKKDKSLSLYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVI 186



 Score = 45.4 bits (106), Expect = 0.015
 Identities = 37/135 (27%), Positives = 65/135 (47%), Gaps = 5/135 (3%)

Query: 468 QAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIG 527
           Q+ L+ +PA   + V      G   H+T +     +       + +LVG+G  LPI  +G
Sbjct: 187 QSSLSKLPAPTYNDVI-SEVQGFDTHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVG 245

Query: 528 SALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYEL 587
           S  + SS     ++ L ++L+ P+I K+L+SVS+   D      F AN   +    T ++
Sbjct: 246 STTISSS---KGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKV 302

Query: 588 LLTGTVGDDGLYYFD 602
           +  G   ++GLY  +
Sbjct: 303 VSKGP-RNNGLYMLE 316


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,853,351,016
Number of Sequences: 2540612
Number of extensions: 130033761
Number of successful extensions: 851143
Number of sequences better than 10.0: 4765
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 3034
Number of HSP's that attempted gapping in prelim test: 782702
Number of HSP's gapped (non-prelim): 43681
length of query: 1611
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1469
effective length of database: 502,593,490
effective search space: 738309836810
effective search space used: 738309836810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)


Lotus: description of TM0320a.8