BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.14
(58 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB41186.1| putative protein [Arabidopsis thaliana] gi|15230... 68 6e-11
gb|AAM18712.1| arabinogalactan-peptide AGP23 [Arabidopsis thaliana] 66 3e-10
gb|AAD21078.2| pollen-specific arabinogalacta protein BAN102 [Br... 65 6e-10
ref|NP_973662.1| expressed protein [Arabidopsis thaliana] 61 9e-09
ref|XP_467488.1| unknown protein [Oryza sativa (japonica cultiva... 56 2e-07
gb|AAQ03094.1| anther-specific protein ASG1 [Malus x domestica] 53 2e-06
gb|AAQ03096.1| anther-specific protein ASG3 [Malus x domestica] 52 5e-06
ref|XP_464461.1| unknown protein [Oryza sativa (japonica cultiva... 51 7e-06
gb|AAM67312.1| unknown [Arabidopsis thaliana] gi|18402781|ref|NP... 42 0.004
gb|AAQ03097.1| anther-specific protein ASG4 [Malus x domestica] ... 42 0.004
ref|ZP_00401604.1| hypothetical protein AdehDRAFT_0840 [Anaeromy... 33 1.5
emb|CAB79487.1| putative protein [Arabidopsis thaliana] gi|45394... 33 1.5
ref|YP_118852.1| hypothetical protein nfa26410 [Nocardia farcini... 33 1.5
ref|NP_691644.1| hypothetical protein OB0723 [Oceanobacillus ihe... 33 2.0
gb|AAF11445.1| tetratricopeptide repeat family protein [Deinococ... 33 2.6
gb|AAM21603.1| ankyrin-like protein [Xanthomonas campestris pv. ... 32 3.4
ref|ZP_00402340.1| Putative esterase [Anaeromyxobacter dehalogen... 32 5.8
ref|ZP_00401085.1| putative protein [Anaeromyxobacter dehalogena... 32 5.8
ref|XP_483413.1| putative auxin-induced protein [Oryza sativa (j... 32 5.8
emb|CAB87692.1| putative protein [Arabidopsis thaliana] gi|22136... 32 5.8
>emb|CAB41186.1| putative protein [Arabidopsis thaliana]
gi|15230372|ref|NP_191328.1| arabinogalactan-protein,
putative (AGP23) [Arabidopsis thaliana]
gi|7485499|pir||T06751 hypothetical protein F15B8.120 -
Arabidopsis thaliana
Length = 61
Score = 68.2 bits (165), Expect = 6e-11
Identities = 35/59 (59%), Positives = 45/59 (75%), Gaps = 2/59 (3%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATV--VGSLVGASVLSFFALF 57
M+MKK+ C VL AASM+A +A EV APAPGPAS ASA + +GSLVGAS++S F+ +
Sbjct: 1 MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 59
>gb|AAM18712.1| arabinogalactan-peptide AGP23 [Arabidopsis thaliana]
Length = 61
Score = 65.9 bits (159), Expect = 3e-10
Identities = 34/59 (57%), Positives = 44/59 (73%), Gaps = 2/59 (3%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATV--VGSLVGASVLSFFALF 57
M+MKK+ C VL AASM+A +A EV APAPGPAS A A + +GSLVGAS++S F+ +
Sbjct: 1 MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAALAALPALGSLVGASLVSLFSYY 59
>gb|AAD21078.2| pollen-specific arabinogalacta protein BAN102 [Brassica rapa]
Length = 61
Score = 64.7 bits (156), Expect = 6e-10
Identities = 32/59 (54%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATV--VGSLVGASVLSFFALF 57
M+MKK+ C V+ A SM+A +A E APAPGPAS ASA + +GSLVGAS++S F+ +
Sbjct: 1 MEMKKIACGVIFAAVSMTAVMAVEEAAAPAPGPASAASAALPALGSLVGASLVSLFSYY 59
>ref|NP_973662.1| expressed protein [Arabidopsis thaliana]
Length = 61
Score = 60.8 bits (146), Expect = 9e-09
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGP-ASGASATV--VGSLVGASVLSFFALF 57
M+MKK+ C V+ AASM+A +A EV APAPGP ASGAS V +GSLVGAS++S FA +
Sbjct: 1 MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 59
>ref|XP_467488.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|45735867|dbj|BAD12901.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 60
Score = 56.2 bits (134), Expect = 2e-07
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGAS-ATVVGSLVGASVLSFFALF 57
M+MKK+ C VL+VAAS + E PAPAP A+ A+ A +G+ +GA+V+SFFA +
Sbjct: 1 MEMKKIACAVLVVAASAATVAFAAEAPAPAPTSAAPAAVAPAIGAALGATVVSFFAYY 58
>gb|AAQ03094.1| anther-specific protein ASG1 [Malus x domestica]
Length = 75
Score = 52.8 bits (125), Expect = 2e-06
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPA--------PAPGPASGASATV--------VGS 44
M MKK+ +VL+VA MSAA+A + A PA P S ASA V VGS
Sbjct: 1 MAMKKIALIVLVVAVCMSAAMAVAPLKAAAATPAASPAATPTSDASAPVPNGSNMNAVGS 60
Query: 45 LVGASVLSFFALF 57
LVGASVLSF AL+
Sbjct: 61 LVGASVLSFLALY 73
>gb|AAQ03096.1| anther-specific protein ASG3 [Malus x domestica]
Length = 75
Score = 51.6 bits (122), Expect = 5e-06
Identities = 32/73 (43%), Positives = 41/73 (55%), Gaps = 16/73 (21%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPA----------------SGASATVVGS 44
M MKK+ VVL+VA MSAA+A + A A PA +G++ VGS
Sbjct: 1 MAMKKIALVVLVVAVCMSAAMAAAPLKAAAATPAATPAAAPVSDASVPAPNGSNMNAVGS 60
Query: 45 LVGASVLSFFALF 57
L+GASVLSF AL+
Sbjct: 61 LIGASVLSFLALY 73
>ref|XP_464461.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|49388139|dbj|BAD25267.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|49388123|dbj|BAD25254.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 116
Score = 51.2 bits (121), Expect = 7e-06
Identities = 26/58 (44%), Positives = 37/58 (62%), Gaps = 3/58 (5%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS---VLSFFA 55
M+MKK+ C VL+ A+ ++A+ +E PA APGP S + AT V + A+ VLSF A
Sbjct: 55 MEMKKIACAVLLAVAASASAVEASESPASAPGPGSASGATAVAAAPAAAAAVVLSFLA 112
>gb|AAM67312.1| unknown [Arabidopsis thaliana] gi|18402781|ref|NP_566668.1|
arabinogalactan-protein, putative (AGP) [Arabidopsis
thaliana]
Length = 62
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1 MDMKKVTCVVLIVAASMSA-ALATNEVPAPAPGPASGASAT--VVGSLVGASVLSFFAL 56
M+MK + + I A +S+ + AT E PAP+PG +S ++ VVGS+V AS+ +F AL
Sbjct: 1 MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLAL 59
>gb|AAQ03097.1| anther-specific protein ASG4 [Malus x domestica]
gi|33308673|gb|AAQ03095.1| anther-specific protein ASG2
[Malus x domestica]
Length = 88
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 29/86 (33%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEV---------------------PAPAP--GPAS-- 35
M MKK+ VVL+VA +SAA+A V PA A GP +
Sbjct: 1 MAMKKIALVVLVVAVCISAAMAAAPVKGAAATTSAATPTAATTAAATPAAAATAGPVAST 60
Query: 36 ----GASATVVGSLVGASVLSFFALF 57
G+S VGSLVGAS+LSF A++
Sbjct: 61 PAPNGSSMNAVGSLVGASLLSFLAIY 86
>ref|ZP_00401604.1| hypothetical protein AdehDRAFT_0840 [Anaeromyxobacter
dehalogenans 2CP-C] gi|66776652|gb|EAL77762.1|
hypothetical protein AdehDRAFT_0840 [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 430
Score = 33.5 bits (75), Expect = 1.5
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 9 VVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS 49
V+L+++A++ AA A PAPAPGPA A+A G+ ++
Sbjct: 31 VLLLLSAAVHAAAAPP--PAPAPGPAPAAAAVTAGAAAASA 69
>emb|CAB79487.1| putative protein [Arabidopsis thaliana]
gi|4539428|emb|CAB38961.1| putative protein
[Arabidopsis thaliana] gi|15236175|ref|NP_194362.1|
arabinogalactan-protein (AGP13) [Arabidopsis thaliana]
gi|10880503|gb|AAG24281.1| arabinogalactan protein
[Arabidopsis thaliana] gi|7487423|pir||T06016
hypothetical protein T25K17.130 - Arabidopsis thaliana
Length = 59
Score = 33.5 bits (75), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 10 VLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALF 57
VL+ A + SA V APAP P S AS + + L+F LF
Sbjct: 12 VLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGFLF 59
>ref|YP_118852.1| hypothetical protein nfa26410 [Nocardia farcinica IFM 10152]
gi|54016118|dbj|BAD57488.1| hypothetical protein
[Nocardia farcinica IFM 10152]
Length = 493
Score = 33.5 bits (75), Expect = 1.5
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 11 LIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFF 54
L+V A + AAL + P P P ASG + TVV VG+ SFF
Sbjct: 144 LLVVAVVVAALLGRQ-PEPEPAAASGPALTVVRGAVGSEKASFF 186
>ref|NP_691644.1| hypothetical protein OB0723 [Oceanobacillus iheyensis HTE831]
gi|22776403|dbj|BAC12679.1| hypothetical conserved
protein [Oceanobacillus iheyensis HTE831]
Length = 434
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (53%)
Query: 7 TCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFF 54
T L+ AS + + N++P S ASATVVG++VG S + +
Sbjct: 260 TAGTLVAVASKAGIMKDNKLPRAGKALFSDASATVVGAVVGTSTTTAY 307
>gb|AAF11445.1| tetratricopeptide repeat family protein [Deinococcus radiodurans]
gi|7473958|pir||C75341 tetratricopeptide repeat family
protein - Deinococcus radiodurans (strain R1)
gi|15806891|ref|NP_295614.1| tetratricopeptide repeat
family protein [Deinococcus radiodurans R1]
Length = 500
Score = 32.7 bits (73), Expect = 2.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 3 MKKVTCVVLIVAASMSAALATNEVPAPAPGPAS 35
M++ + L+ AA++ ALA N PAPAP P +
Sbjct: 94 MQRFLTLALLGAAALGGALAQNAAPAPAPAPVA 126
>gb|AAM21603.1| ankyrin-like protein [Xanthomonas campestris pv. phaseoli]
Length = 208
Score = 32.3 bits (72), Expect = 3.4
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 3 MKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGS 44
M+ + ++L A++++ A + PAPAP PAS ASAT +
Sbjct: 10 MRTLLFLMLGSASAIANAASPAPAPAPAPAPASAASATATAT 51
>ref|ZP_00402340.1| Putative esterase [Anaeromyxobacter dehalogenans 2CP-C]
gi|66775905|gb|EAL77044.1| Putative esterase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 442
Score = 31.6 bits (70), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 3 MKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASA 39
M+ + V +VA +++ A P+PAP PA GA A
Sbjct: 1 MRTLGAVASLVALTVTGGAAAQGAPSPAPAPAGGAPA 37
>ref|ZP_00401085.1| putative protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|66777204|gb|EAL78303.1| putative protein
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 447
Score = 31.6 bits (70), Expect = 5.8
Identities = 17/44 (38%), Positives = 22/44 (49%)
Query: 6 VTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS 49
+T L++A +SA A PAPAP PA A G GA+
Sbjct: 7 ITTSALLLAVFLSAPAARAAEPAPAPQPAPAAKPAAGGDKSGAA 50
>ref|XP_483413.1| putative auxin-induced protein [Oryza sativa (japonica
cultivar-group)] gi|29647484|dbj|BAC75413.1| putative
auxin-induced protein [Oryza sativa (japonica
cultivar-group)]
Length = 263
Score = 31.6 bits (70), Expect = 5.8
Identities = 17/38 (44%), Positives = 20/38 (51%)
Query: 12 IVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS 49
+V A AA AT+ PAP P +G A GS GAS
Sbjct: 191 LVLAGSKAATATSPASEPAPAPVAGGPAPSSGSDSGAS 228
>emb|CAB87692.1| putative protein [Arabidopsis thaliana]
gi|22136564|gb|AAM91068.1| AT5g11740/T22P22_130
[Arabidopsis thaliana] gi|14030655|gb|AAK53002.1|
AT5g11740/T22P22_130 [Arabidopsis thaliana]
gi|15239156|ref|NP_196735.1| arabinogalactan-protein
(AGP15) [Arabidopsis thaliana]
gi|10880507|gb|AAG24283.1| arabinogalactan protein
[Arabidopsis thaliana] gi|11358218|pir||T48533
hypothetical protein T22P22.130 - Arabidopsis thaliana
Length = 61
Score = 31.6 bits (70), Expect = 5.8
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
M + K + VVL++ A A +E PAP+ P SG+SA + S V A V + AL
Sbjct: 1 MAISKASIVVLMMVIISVVASAQSEAPAPS--PTSGSSA-ISASFVSAGVAAVAAL 53
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,685,265
Number of Sequences: 2540612
Number of extensions: 2414069
Number of successful extensions: 28414
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 28356
Number of HSP's gapped (non-prelim): 41
length of query: 58
length of database: 863,360,394
effective HSP length: 34
effective length of query: 24
effective length of database: 776,979,586
effective search space: 18647510064
effective search space used: 18647510064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0318.14