BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0318.12
         (1553 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi...  1282  0.0
gb|AAO23078.1| polyprotein [Glycine max]                             1174  0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia...  1072  0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa...  1025  0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160...  1023  0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva...  1021  0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]                      1014  0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult...  1013  0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul...  1008  0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult...   998  0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu...   994  0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop...   979  0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar...   978  0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu...   978  0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon...   956  0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv...   928  0.0
gb|AAX95226.1| retrotransposon protein, putative, unclassified [...   915  0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]                890  0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon...   845  0.0
gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)]   811  0.0

>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1661

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 668/1438 (46%), Positives = 933/1438 (64%), Gaps = 42/1438 (2%)

Query: 122  RKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQV 181
            R +D P ++G  +A  W+ +LE+ F      EEEK++  +  L G +++W++  +   Q+
Sbjct: 229  RTVDYPAYEGG-NADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQI 287

Query: 182  TTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDI 241
             TW +F+E  + RF+ +  SS    LL ++Q G+VEE+  +FE     L  +  +     
Sbjct: 288  YTWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESA 347

Query: 242  FVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRST 301
            F+NGL+  +  ++    P +L  +V+ A ++E +        + + +R N++   PF + 
Sbjct: 348  FLNGLRRSLRDQVVRCRPVNLADIVEIAKLIESQERNAVSYQVRNQARTNTA---PFNN- 403

Query: 302  TFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKG 361
                  Q+ TG +    + T+     S  +      G                 E     
Sbjct: 404  ------QVSTGSRVVDRAPTRQPFIPSRDTTRASGSG-----------------EARNSN 440

Query: 362  ECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEE--IETL-EPLTEEI---EEAMELKHLS 415
             C  C +++   H CK ++ + + + ++ EEE   IE L EPLTEE    E A   K ++
Sbjct: 441  PCRYCGDRWFQGHKCKPQKLKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMT 500

Query: 416  LNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVG 475
            L+S+   S  +S+K+ G +  T +V+LVD GAT NFIS++L RE    +T+T ++ V+VG
Sbjct: 501  LSSLNDESQEQSMKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVG 560

Query: 476  DGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLK 535
             G ++KS G C ++ +++QG    QD++LF L  +D+VLG  WLAGLG+ +AN+ +L + 
Sbjct: 561  GGRIIKSSGKCVDIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRIS 620

Query: 536  FKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETP--ELL 593
            +++G   V L G+P+L + + SM ++ + I+  G  Y+L+   L +   + E+T     +
Sbjct: 621  WQIGRTWVSLYGDPDLCRGQISMRSMERVIKYTGTAYLLELASLFESKKQEEQTALQPAI 680

Query: 594  KAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLN 653
            + +L  +  +F  P  LPP R  +HAI L+EG+S  NIRPYRY   QKNEIEKLV EMLN
Sbjct: 681  QRLLDQYQGVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLN 740

Query: 654  AGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARV 713
            A IIRPS+SPYSSPV+LV+KKDG WRFCVDYRALN+ T+P+K+PIPVI+ELLDE+  A V
Sbjct: 741  AQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATV 800

Query: 714  FSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVL 773
            FSK+DLKSGY QI MK  DVEKTAF+THEGHYEFLVMPFGLTNAPSTFQS+MN++ RP L
Sbjct: 801  FSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYL 860

Query: 774  RKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSA 833
            RK  LVFFDDIL+YS  M+ H+ HL  VLQL+  H    N KK  FG  +I YLGH++S 
Sbjct: 861  RKFVLVFFDDILVYSPDMKTHLKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISE 920

Query: 834  GTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQW 893
              VA DP+K+EAM  WP+PK +  LRGFLG TGYYRRFVK+YG+IARPL   LKK+SF W
Sbjct: 921  QGVATDPEKVEAMLQWPLPKSVTELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFDW 980

Query: 894  GPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLS 953
              +   AF+ALK  ++ +P L +PDF + F +ETDASG G+GAVL+Q  + +AF S   S
Sbjct: 981  NEAATSAFQALKAAVSALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFS 1040

Query: 954  DRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISK 1013
             + + +SVYEREL+A+V+AV +W+HYL  + FII+TDQ+SL+ L EQ+ V   Q +W SK
Sbjct: 1041 SQGRIRSVYERELLAIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASK 1100

Query: 1014 LSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVN-----DFEEWQTEMLQDPKLQAI 1068
            LSG  + I+YKPG DN  ADA+SRR    ALS L +      D    + E+ QD +L  I
Sbjct: 1101 LSGLKYRIEYKPGVDNKVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQI 1160

Query: 1069 VHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRR 1128
            + +          +T+ D  ++ KG LV+   S  IP + ++FH S +GGH G  +T++R
Sbjct: 1161 LKNWAQGDHHDSDFTVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKR 1220

Query: 1129 LAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLP 1188
            L + VYW G++ D+ +++  C  CQ NK+  LSPAGLL PLP+P Q+W+DVS+DF+ GLP
Sbjct: 1221 LTSEVYWRGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLP 1280

Query: 1189 KSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFL 1248
             SN  + ILVVVDRL+KY+HFIPL+HPFTA  V   F+ +VV+LHGFP T+VSDRD +FL
Sbjct: 1281 SSNRFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFL 1340

Query: 1249 SSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEF 1308
            S FW ELF++ GT L+ S+AYHPQTDGQTEVVNRCLE YLRC  G RP  W   LPWAE+
Sbjct: 1341 SGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEY 1400

Query: 1309 WFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKS 1368
            W+N++Y+ + K +PFQA+YGREPPVLL+   IP+  A V +L   RD +L +LR NL  +
Sbjct: 1401 WYNTSYHSATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIA 1460

Query: 1369 QDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAV 1428
            Q  M+  A+K RRDV ++I + V+LKL+PYR+ S+A + NEKLS RY+GP+ ++ +IG V
Sbjct: 1461 QAQMKKAADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQV 1520

Query: 1429 AYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAVRET-TM 1487
            AY+L+LP HS +HPVFHVS LK AV  +F PQ LP  L+   E    PE +L +R++ T 
Sbjct: 1521 AYKLQLPEHSTIHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTN 1580

Query: 1488 GQIEVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGGIDEHRPSIKKVYER 1545
               EVL+QW  L   E++WE    L + +PDF LEDKV  L G ID  + ++  V  R
Sbjct: 1581 SGPEVLVQWSGLSTLESTWEPLLTLVQQYPDFDLEDKVSLLRGSIDRLQVTLAGVRRR 1638


>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score = 1174 bits (3036), Expect = 0.0
 Identities = 633/1440 (43%), Positives = 895/1440 (61%), Gaps = 42/1440 (2%)

Query: 114  ANAQTERWR--------KLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALD 165
            +N+Q E+ R        KLD P F G+ +   WI K E++F      + +++    V LD
Sbjct: 82   SNSQKEQQRSSFQVRSVKLDFPRFDGK-NVMDWIFKAEQFFDYYATPDADRLIIASVHLD 140

Query: 166  GKALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFER 225
               + WYQ  +     ++W  F  A+   F  ++   P A L  L Q  +V E+  QF  
Sbjct: 141  QDVVPWYQMLQKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTA 200

Query: 226  FAGMLKGIDEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIG 285
                + G+  E  +D FV+GL+EEI+ ++K  EP++LT  V  A + E+K  +  K    
Sbjct: 201  LVNRVDGLSAEAILDCFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTF 260

Query: 286  STSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKP--ARG 343
            S    N      F S T        T QK+ +       +  +  +       KP   R 
Sbjct: 261  SNLARN------FTSNTSATQKYPPTNQKNDNPKPNLPPLLPTPST-------KPFNLRN 307

Query: 344  GVYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNKQFRVMLLR-DDGEEEEIETLEPLT 402
               +K++  E++ +  K  C+ CDEKF P H C N+Q  VMLL+ ++ +E++ +    +T
Sbjct: 308  QNIKKISPAEIQLRREKNLCYFCDEKFSPAHKCPNRQ--VMLLQLEETDEDQTDEQVMVT 365

Query: 403  EEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMEL 462
            EE     +  HLSLN+++G +   +++  G++ G A+ +LVD G++ NFI   +A+ ++L
Sbjct: 366  EEANMDDDTHHLSLNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKL 425

Query: 463  QITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGL 522
             +   P   V VG+G ++ ++G+ + L + IQG  V    +L  + G DV+LG  WLA L
Sbjct: 426  PVEPAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATL 485

Query: 523  GDIKANFEELTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKE 582
            G   A++  LTLKF   +K + L+GE      +A ++   +    +        Q+++KE
Sbjct: 486  GPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKE 545

Query: 583  VAK-------AEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYR 635
            V +           PEL   +L  +  +FA P  LPPQR  DHAI LK+G+    +RPYR
Sbjct: 546  VPEDTLKDLPTNIDPELA-ILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYR 604

Query: 636  YPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNK 695
            YPH QK++IEK++ EML  GII+PS SP+S P++LV+KKDGSWRFC DYRALN ITV + 
Sbjct: 605  YPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDS 664

Query: 696  FPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLT 755
            FP+P +DELLDE+  A+ FSK+DL+SGYHQI+++ ED EKTAFRTH GHYE+LVMPFGLT
Sbjct: 665  FPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLT 724

Query: 756  NAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGK 815
            NAP+TFQ LMN++ +  LRK  LVFFDDILIYS + ++H+ HL  VLQ + QH L     
Sbjct: 725  NAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLS 784

Query: 816  KSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDY 875
            K  FG  +++YLGH +S   V+ +  K++A+  WP P ++K LRGFLGLTGYYRRF+K Y
Sbjct: 785  KCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSY 844

Query: 876  GKIARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLG 935
              IA PLT LL+KDSF W    + AF  LK  +TE P L++PDFS+ F+LETDASG G+G
Sbjct: 845  ANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVG 904

Query: 936  AVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLK 995
            AVL Q G P+A++S  L+ R Q +S Y REL+A+  A+ ++RHYLLG  FIIRTDQ+SLK
Sbjct: 905  AVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLK 964

Query: 996  FLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEW 1055
             L +Q +    Q  W+ K  GYDF+I+YKPGKDN AADA+S R    A S       EE 
Sbjct: 965  SLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALS-RMFMLAWSEPHSIFLEEL 1023

Query: 1056 QTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASL 1115
            +  ++ DP L+ ++       +A   YT+++  L++K ++V+  +   +  + +E+H+S 
Sbjct: 1024 RARLISDPHLKQLMETYKQGADA-SHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSP 1082

Query: 1116 LGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQV 1175
            +GGH+G  RT  RL A  YW  M+ D++ ++ +C  CQ+ K +N  PAGLLQPLP+P QV
Sbjct: 1083 IGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQV 1142

Query: 1176 WTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGF 1235
            W DV+MDFI GLP S G   I+VV+DRLTKYAHFIPL+  + +  VA  F+  +V+LHG 
Sbjct: 1143 WEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGI 1202

Query: 1236 PTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSR 1295
            P +IVSDRD +F S+FW+ LF++ GT L  SSAYHPQ+DGQ+EV+N+CLE+YLRC T   
Sbjct: 1203 PRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEH 1262

Query: 1296 PRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRD 1355
            P+ WV  LPWAEFW+N+ Y+ S  M+PF+ALYGREPP L +        A V +    RD
Sbjct: 1263 PKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRD 1322

Query: 1356 ELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRY 1415
             LL+ L+ NL ++Q +M+  A+KKR DV +QIGDEV +KLQPYR+ S   + N+KLS RY
Sbjct: 1323 ALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRY 1382

Query: 1416 YGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQ-PLPAALNEDHELLV 1474
            +GP+ ++AKIG VAY+LELP+ +R+HPVFHVS LK   GT   P  PLP  + E   ++ 
Sbjct: 1383 FGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVM- 1441

Query: 1475 EPESVLAVRETTMG--QIE-VLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGG 1531
            +P  +LA R    G  QIE +L+QW +    E +WE    +  ++P F LEDKV   G G
Sbjct: 1442 QPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEG 1501


>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
            gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
            polyprotein; 69905-74404 [Arabidopsis thaliana]
          Length = 1499

 Score = 1072 bits (2772), Expect = 0.0
 Identities = 605/1543 (39%), Positives = 914/1543 (59%), Gaps = 89/1543 (5%)

Query: 19   VMNRDREEERRNREEDRRIRDEERRER-----AIEHERVEQRFRNLEAIVATMTRRRAGE 73
            V  R +E + + +E +  +  + R  R     A +H+ + ++F +L A+   ++R  AG+
Sbjct: 2    VTTRSQEGDGKGKEVELEVPLDSRVTRLETTVAEQHKEMMKQFADLYAV---LSRSTAGK 58

Query: 74   HGDSDGEQERR--RMEEERTVNGGQPGSVRDEADARENLQRT----ANAQTERWRKLDIP 127
              D     +R   R  +      G P   RD   AR    R+    A     R  K+D P
Sbjct: 59   MVDEQSTLDRSAPRSSQSMENRSGYPDPYRD---ARHQQVRSDHFNAYNNLTRLGKIDFP 115

Query: 128  VFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQ----VTT 183
             F G      W+ K+E +F +    E+ KV+   +  D  A +W+Q +         +  
Sbjct: 116  RFDGTR-LKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYD 174

Query: 184  WTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFV 243
            W  + + + ERF+      P A L  L++   + ++  +FE     +  + EE+ + +++
Sbjct: 175  WKGYVKLLKERFE-DDCDDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLVSVYL 232

Query: 244  NGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTF 303
             GL+ +    +++++P++    V+  L             +G T       KP   +TT+
Sbjct: 233  AGLRTDTQMHVRMFQPQT----VRHCLF------------LGKTYEKAHPKKPA--NTTW 274

Query: 304  QKSVQIDTG-----QKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKL 358
              +    TG     QK G         + +   V+++           +K++ +EM ++ 
Sbjct: 275  STNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQP----------KKMSQQEMSDRR 324

Query: 359  RKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNS 418
             KG C+ CDEK+ P H   +K  +  L R D +EE  +  E L  + +E M    +S+N+
Sbjct: 325  SKGLCYFCDEKYTPEHYLVHK--KTQLFRMDVDEEFEDAREELVNDDDEHMP--QISVNA 380

Query: 419  IQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGH 478
            + GI+  K+++V G      I +L+D G+THNF+  + A ++  ++       V V DG 
Sbjct: 381  VSGIAGYKTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGR 440

Query: 479  VVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKL 538
             ++ +G   + S ++Q      D  L  L+G+D+VLG++WL  LG I   F++L ++FK 
Sbjct: 441  KLRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKF 500

Query: 539  GNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEE---------T 589
             N+KV+L G    L   +      + +Q+  E  V    +  +EV+++ E         T
Sbjct: 501  NNQKVLLHG----LTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALT 556

Query: 590  PEL-----LKAVLSDFPALFAAPTELPPQR-RHDHAIHLKEGASIPNIRPYRYPHYQKNE 643
             EL     ++ VL+++P +F  PT LPP R +H+H I L EG++  N RPYRY  +QKNE
Sbjct: 557  SELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNE 616

Query: 644  IEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDE 703
            I+KLV ++L  G ++ S SPY+SPV+LV+KKDG+WR CVDYR LN +TV + FPIP+I++
Sbjct: 617  IDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIED 676

Query: 704  LLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQS 763
            L+DE+G A +FSKIDL++GYHQ+ M  +D++KTAF+TH GH+E+LVMPFGLTNAP+TFQ 
Sbjct: 677  LMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQG 736

Query: 764  LMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQ 823
            LMN + +P LRK  LVFFDDIL+YS ++EEH  HL QV ++M  + L     K  F   +
Sbjct: 737  LMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPK 796

Query: 824  IEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLT 883
            +EYLGH +SA  +  DP K++A+  WP P  LK LRGFLGL GYYRRFV+ +G IA PL 
Sbjct: 797  VEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLH 856

Query: 884  QLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGK 943
             L K D+F+W    QQAFE LK  L + P L++P F K FV+ETDA G G+GAVL QEG 
Sbjct: 857  ALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGH 916

Query: 944  PLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVV 1003
            PLA+ S  L  +    S+YE+EL+AV+ AV++WRHYLL  HFII+TDQ+SLK+L EQ++ 
Sbjct: 917  PLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLN 976

Query: 1004 GEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEM 1059
               Q +W+ KL  +D+EIQY+ GK+N  ADA+SR       + A++V++ +  ++ Q   
Sbjct: 977  TPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGY 1036

Query: 1060 LQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGH 1119
              D +LQ I+  L  DP++ K ++   + L  K K+V+    +    +    H S +GGH
Sbjct: 1037 ANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGH 1096

Query: 1120 SGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDV 1179
            SG   T++R+  + YW+GM  DI+ ++  C TCQ+ K D  +  GLLQPLP+P  +W++V
Sbjct: 1097 SGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEV 1156

Query: 1180 SMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTI 1239
            SMDFI GLP S GK  I+VVVDRL+K AHFI L HP++A  VA  +L  V +LHG PT+I
Sbjct: 1157 SMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSI 1216

Query: 1240 VSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKW 1299
            VSDRD +F S FW+E F + G  LK +SAYHPQ+DGQTEVVNRCLE YLRC+   RP+ W
Sbjct: 1217 VSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLW 1276

Query: 1300 VTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLS 1359
               L  AE+W+N+NY+ S++M+PF+ +YG+ PPV L      SK+A V      R+++L 
Sbjct: 1277 SKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLL 1336

Query: 1360 DLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPY 1419
             L+ +L+++Q  M+ +A++ R + +++IGD V++KLQPYR++S+  + N+KLSP+Y+GPY
Sbjct: 1337 FLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPY 1396

Query: 1420 PIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESV 1479
             I+ + G VAY+L LP++S+VHPVFHVS LK  VG       LP+ + +  E +  PE V
Sbjct: 1397 KIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV--PEKV 1454

Query: 1480 L---AVRETTMGQIEVLIQWHSLPACENSWESAAQLHEAFPDF 1519
            +    V        +VL++W + P  E +WE    L + FP+F
Sbjct: 1455 VERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497


>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1495

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 588/1445 (40%), Positives = 831/1445 (56%), Gaps = 70/1445 (4%)

Query: 101  RDEADARENLQRTA------NAQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEE 154
            +D+ADAR    +        N+   R  KL+ P + G+ D   W+ + E  FR +   E 
Sbjct: 82   QDDADARSRRDQHGDDTAIDNSFLPR-AKLEFPTYDGKGDPLPWLNRCET-FRGQKTPET 139

Query: 155  EKVQAIMVALDGKALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEG 214
             KV    + L G A  WY   E  +   +W +F + +  RF      SP   L AL++ G
Sbjct: 140  RKVWYASLHLIGDAQLWYYRIELNSGEPSWRRFVQLVHTRFGPPMTDSPLGELTALRRTG 199

Query: 215  SVEEFVGQFERFAGMLKGIDEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQ 274
            +VE +V  F   A     + E   + +F  GL   +  ++ L  P+SL   +  A   EQ
Sbjct: 200  TVENYVNSFLALACRDVELSESQQVQLFTAGLVNPLKTDVALCRPRSLDDAIMLARAYEQ 259

Query: 275  KNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNE 334
            +      A +G T         P      + S+   +   S S S T   V +S+ +   
Sbjct: 260  R------ATLGPTDP-----SAPRTGRVPRPSLPASSAA-SASASTTSADVAASTAA--- 304

Query: 335  RVGGKPARGGVYRK-LTGEEMKEKLRKGECFRCDEKFGPNHICKNK-QFRVMLLRDDGEE 392
              G +P    + RK L+  EM ++  +G C+ CDEK+   H CK      V+   +D  +
Sbjct: 305  --GKQPLVSALPRKRLSPAEMAQRRSEGLCYNCDEKYVAGHRCKKSFVIEVISFPEDTGD 362

Query: 393  EEIETLEPLTEEIEEAMELKHLSLNSIQGISSRK--SLKVWGKLKGTAIVVLVDCGATHN 450
            EE  T E     ++E      + L+++ GIS+ K  ++KVW +L    +V L+D G+THN
Sbjct: 363  EEDSTPEAHAITLDEPS----IFLHALAGISAPKFNTIKVWARLGSQELVALLDSGSTHN 418

Query: 451  FISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGV 510
            FI+ ++A +  + +   P  +V V +G  V S G C    V I       DF+   L G 
Sbjct: 419  FINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGRCPPQRVSIGSHEFDIDFYALPLGGY 478

Query: 511  DVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGE 570
            D+VLG +WL  LG    +F   +L F   + +V            A   AL  AI  Q  
Sbjct: 479  DIVLGAQWLGTLGPTLWDFSRQSLAFGPAHDRVTWTS-----IDAAPAPALAAAIDGQ-- 531

Query: 571  GYVLQYQMLEKEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPN 630
                                +L+  +L     LF  P  LPP+R   H I L+ G S   
Sbjct: 532  ------------------PGDLMTDLLDVLKDLFTEPHGLPPERHLCHRIRLEAGVSAVA 573

Query: 631  IRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKI 690
            +RPYRY H QK+E+E+   +ML  G+IRPS S +SSP +L++K DGSWRFCVDYRALN  
Sbjct: 574  VRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAFSSPALLIKKCDGSWRFCVDYRALNDK 633

Query: 691  TVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVM 750
            T+ +KFPIPV +EL DE+  A+ F+K+D++SGYHQ++M  +DV KTAFRTH+G +EFLVM
Sbjct: 634  TIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYHQVLMHPDDVHKTAFRTHQGLFEFLVM 693

Query: 751  PFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDL 810
            PFGLTNAP+TFQ+LMN+VL P LR+  LVFFDDILIYS +  EH+ H+  VLQ +  H L
Sbjct: 694  PFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDILIYSSSWSEHLRHVRTVLQTLQDHCL 753

Query: 811  KINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRR 870
             +   K  FG   + YLGHV+S   VA D  K++A+  WPVPK ++++RGFLGL GYYRR
Sbjct: 754  HLKRSKCEFGLTSVAYLGHVISGDGVAMDRSKVQAVLDWPVPKTVRAVRGFLGLAGYYRR 813

Query: 871  FVKDYGKIARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDAS 930
            F++D+G IA PLT LL+K+ F+W      AF  L+H LT  P L +PDF++ F++E DAS
Sbjct: 814  FIRDFGAIAAPLTALLRKEGFRWSDEAAAAFRKLQHALTAAPVLQLPDFNRDFIVECDAS 873

Query: 931  GTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTD 990
            GTGLGAVL Q G P+AF+S  ++ R    + YEREL+ +V+AV+ WR YL GR FIIRTD
Sbjct: 874  GTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTD 933

Query: 991  QKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCA----LSV 1046
              SL+FL +Q++    Q  W SKL G+DF ++YKPG  N  ADA+SRR  + A    LS 
Sbjct: 934  HYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKPGTANVVADALSRRDEHLAEAFVLSA 993

Query: 1047 LKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPI 1106
               +  ++ + E+   P L ++  D+I   +    +  KD  +  K ++ + + S  +P 
Sbjct: 994  PHFSLLDDVRREVASTPSLASLRDDIIRGAKP-PPWAFKDGLIVLKDRVFIPESSPLLPA 1052

Query: 1107 LCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLL 1166
            + +  H     GH G  +T  RL A  +    +  ++DFV  C TCQRNK ++L PAGLL
Sbjct: 1053 VLELAHGH---GHEGTQKTMFRLRADFHVPRDRVLVQDFVRACLTCQRNKTEHLQPAGLL 1109

Query: 1167 QPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFL 1226
            Q LPVP+ VW D++MDF+ GLP+ +GK  IL VVDR +K+AHFIPL HP+TA  VAA F 
Sbjct: 1110 QSLPVPSAVWADIAMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPLSHPYTATTVAAAFF 1169

Query: 1227 HEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEV 1286
             ++VRLHG P++IVSDRD +F S FW ELFR++G QL  +SA+HPQ+DGQ+EV N+ + +
Sbjct: 1170 GDIVRLHGVPSSIVSDRDPVFTSKFWTELFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAM 1229

Query: 1287 YLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAA 1346
            YLRCLTG RPR+W+  LPWAE+ +N++Y  S + +PF  +YGR PP L       + + A
Sbjct: 1230 YLRCLTGDRPRQWLRWLPWAEYCYNTSYQASLRTTPFHVVYGRSPPSLRSYEPGSTCLPA 1289

Query: 1347 VNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKK 1406
            V      RD+ L  +R  L ++Q + +   +KK R++++ +GD V+L+L      SL  +
Sbjct: 1290 VQRSMQDRDQFLVAIRDRLEQAQQVYKQAYDKKHRELNFDVGDWVWLRLLHRPMASLDTR 1349

Query: 1407 MNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAAL 1466
               KL P++YGPY IVA IG+VAYRL LP  +R+H VFHV LLK   G    P  LP   
Sbjct: 1350 GRGKLGPKFYGPYQIVACIGSVAYRLRLPPGARLHDVFHVGLLKPFRGE--PPSTLPPLP 1407

Query: 1467 NEDH-ELLVEPESVLAVRETTMGQIEVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKV 1525
               H ++ +EP+SV   R    G  +VL+QW + PA + SW S  +    +PDF LED++
Sbjct: 1408 PTQHGQVCLEPQSVSRSR-LARGVRQVLVQWKNKPAADASWLSLDEFRALYPDFQLEDEL 1466

Query: 1526 KHLGG 1530
               GG
Sbjct: 1467 LLEGG 1471


>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
            Putative retroelement [Oryza sativa]
          Length = 1461

 Score = 1023 bits (2646), Expect = 0.0
 Identities = 582/1424 (40%), Positives = 818/1424 (56%), Gaps = 80/1424 (5%)

Query: 119  ERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKV-QAIMVALDGKALSWYQWWET 177
            + WR  D P + G+ D   +I + E +F  +   +EEKV  A    L+G  L + Q  E 
Sbjct: 65   KHWRP-DFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQED 123

Query: 178  CNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEH 237
                 TWT+FKE +  R+     S+P   L + ++ G+VE++  +F+        +DEE 
Sbjct: 124  ERGTPTWTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQ 183

Query: 238  YMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKAL---MVEQKNLAVSKAGIGSTSRYNSSF 294
             + +F  GL   ++ ++++  P+SL   +  A    ++EQ     +KA            
Sbjct: 184  RVQLFTGGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYTAVPAKA------------ 231

Query: 295  KPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEM 354
              P R      + +      + +G+       +++         +P R     +L   E 
Sbjct: 232  --PGRGVLPAPAPRPQLALPAPAGAAKPAPPAATAAD------NRPVR-----RLNQAEQ 278

Query: 355  KEKLRKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHL 414
            +E+ R G CF CDEK+   H   NK  + +   D  E+E+ E  E   +E++   E    
Sbjct: 279  EERRRLGLCFNCDEKYSRGH---NKVCKRLFFVDSVEDEDEEAPE---DEVDA--EAPVF 330

Query: 415  SLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEV 474
            SL+++ G++    + +  +L  T +V LVD G+THNFI +S A    L +   P  T  V
Sbjct: 331  SLHAVAGVAVGHPILLRVQLGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATV 390

Query: 475  GDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTL 534
             +G  V   GV ++  + I+G     D ++  L G D+VLG +W+A LG +  +     L
Sbjct: 391  ANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRAL 450

Query: 535  KFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETPELLK 594
             F L  + +  +G P                 Q G             V  A     LL 
Sbjct: 451  TFDLEGRTICWQGAPN----------------QDGPA-----------VRAASADDSLLG 483

Query: 595  AVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNA 654
             +L  F  +F  PT LPPQR  DHAI LK+G S   +RPYRYP   K+E+E+  A M++ 
Sbjct: 484  GLLDSFADVFTEPTGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDELERQCAAMISQ 543

Query: 655  GIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVF 714
            GI+R S S +SSPV+LV+K D SWRFCVDYRALN +TV + FPIPV+DELLDE+  AR F
Sbjct: 544  GIVRRSDSAFSSPVLLVKKADSSWRFCVDYRALNALTVKDAFPIPVVDELLDELHGARFF 603

Query: 715  SKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLR 774
            SK+DL+SGYHQ+ M+ ED+ KTAFRTH+G YEFLVMPFGL NAP+TFQ+LMN+VLR  LR
Sbjct: 604  SKLDLRSGYHQVRMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRSFLR 663

Query: 775  KCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAG 834
            +  LVFFDDILIYS T  +H+ HL  VL ++ +H L I   K  FG   + YLGHV+SA 
Sbjct: 664  RFVLVFFDDILIYSDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGVDSVAYLGHVISAA 723

Query: 835  TVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWG 894
             VA DP K++A+  WP P+  +++RGFLGL GYYR+FV +YG IA PLT LLKK+ F W 
Sbjct: 724  GVAMDPAKVQAIREWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLTALLKKEGFAWT 783

Query: 895  PSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSD 954
             +   AF+ALK  ++  P LA+PDF+K F +E DAS  G GAVL Q+G PLAF+S  ++ 
Sbjct: 784  EAATAAFDALKAAVSSAPILAMPDFTKAFTVECDASSHGFGAVLIQDGHPLAFFSRPVAP 843

Query: 955  RSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKL 1014
            R +A + YEREL+ +V AV+ WR YL GRHF ++TD  SLK+L +Q++    Q  W+ KL
Sbjct: 844  RHRALAAYERELIGLVLAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLSTIPQHHWVGKL 903

Query: 1015 SGYDFEIQYKPGKDNSAADAMSRR-----SSYCALSVLKVNDFEEWQTEMLQDPKLQAIV 1069
             G+DF ++YKPG  N+ ADA+SRR     +S   LS  + +  E  +     DP L A+ 
Sbjct: 904  LGFDFTVEYKPGAANTVADALSRRDTTEDASVLVLSAPRFDFIERLRQAQDVDPALVALQ 963

Query: 1070 HDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRL 1129
             ++     A   +++ D  + + G+L L   S   P+L +   A    GH G  RT  RL
Sbjct: 964  AEIRSGTRAGP-WSMADGMVLFAGRLYLPPAS---PLLQEVLRAVHEEGHEGVQRTLHRL 1019

Query: 1130 AAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPK 1189
                ++  MKS ++DFV  C+ CQR K ++L PAGLL PLPVP  VWTDV++DF+  LP+
Sbjct: 1020 RRDFHFPNMKSVVQDFVRTCEVCQRYKAEHLQPAGLLLPLPVPQGVWTDVALDFVEALPR 1079

Query: 1190 SNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLS 1249
              GK  IL VVDR +KY HFIPL HP++A  VA +F  E+VRLHG P ++VSDRD +F S
Sbjct: 1080 VRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQVFFAEIVRLHGVPQSMVSDRDPVFTS 1139

Query: 1250 SFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFW 1309
            +FW EL R+ GT+L  ++A+HPQ+DGQ+E  NR + +YLRCLTG RPR+W+  LPWAEF 
Sbjct: 1140 AFWSELMRLVGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFV 1199

Query: 1310 FNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQ 1369
            FN+ Y  S + +PF+ +YGR+PP +       +++AAV      R E L D+R  L ++Q
Sbjct: 1200 FNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKSMEERSEFLEDIRYRLEQAQ 1259

Query: 1370 DMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVA 1429
             + + Y +K  R V +Q+GD V L+L+     SL+  ++ KL PRY+GPY I   I  VA
Sbjct: 1260 AIQKKYYDKSHRAVSFQVGDWVLLRLRQRAPASLSLAVSGKLKPRYFGPYRIAEMINEVA 1319

Query: 1430 YRLELPAHSRVHPVFHVSLLKTAVGT-NFQPQPLPAALNEDH-ELLVEPESVLAVRETTM 1487
             RL LPA +R+H VFH+ LLK   G     P PLP   N  H  +  EPE V+  R    
Sbjct: 1320 ARLALPAGARLHDVFHIGLLKKWHGAPPDAPPPLP---NVHHGAVACEPERVIKAR-LAR 1375

Query: 1488 GQIEVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGG 1531
            G  +VL+QW    A   +WE        +P   LED++   GGG
Sbjct: 1376 GVRQVLVQWKGTSAASATWEDREPFFARYPALQLEDELPLDGGG 1419


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
          Length = 1586

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 561/1463 (38%), Positives = 839/1463 (57%), Gaps = 90/1463 (6%)

Query: 87   EEERTVNGGQPGSVRDEADARENLQRTANAQTERWRKLDIPVFQGEEDAYSWIQKLERYF 146
            +++R + GG  G     A+A             +  +L+IP+F GE D   W+++ E+++
Sbjct: 182  DQQRNILGGHMGDGNHYAEA-----------IIKGPRLEIPLFSGE-DPIDWLKQCEKFY 229

Query: 147  RLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAA 206
             + G   E+ V   +  L GKA+ WY+      Q+ TW ++   +  RF           
Sbjct: 230  EISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPWQLITWPQWCAMVSTRFSAADTHEAVEL 289

Query: 207  LLALKQEG-SVEEFVGQFERFAGMLKG----IDEEHYMDIFVNGLKEEIAAEIKLYEPKS 261
               +KQ   +VE+++ +FE +  +++     + E++    F+ GL+ +I  ++  ++P+ 
Sbjct: 290  FQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQEQYLNSCFIGGLRGDIKHDVCGHKPQG 349

Query: 262  LTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVT 321
            L                                     S  + K+ +     +    +  
Sbjct: 350  L-----------------------------------LESYWYTKNYERAANARKNLLNFN 374

Query: 322  QGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNKQF 381
            +   Q+ +G +  R         V  +    E  EK  + +C+ C E + P H CK K+ 
Sbjct: 375  RNRFQNQAGPIQGR--------NVVNRGQPREQVEKKEERKCWFCKEPWFPKHQCKVKKA 426

Query: 382  RVMLL------RDDGEEEEI-----------ETLEPLTEEIEEAMELKHLSLNSIQGISS 424
               LL      +D+GEE E+           E   P  E  EE M + H   N++ G + 
Sbjct: 427  LNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEELMFVSH---NAVYGTTR 483

Query: 425  RKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKG 484
              +  V  ++ G   V LVD G+T  F+ Q  A      +  T A  V V  G  +KS+ 
Sbjct: 484  PDTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSEV 543

Query: 485  VCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVV 544
                L  QIQG   +  F +  L+G DV+LG +W+     I  + ++  L    G K VV
Sbjct: 544  QVPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLKKRELGITKGEKTVV 603

Query: 545  LKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLE-KEVAKAEETPELLKAVLSDFPAL 603
            ++      K     +  V  I ++G G    +Q+   KE   + E PE +K +L +FPA+
Sbjct: 604  IQDFTRPGKHLWVDSKKVDQILRKG-GLGCLFQITRVKEEETSHEIPEDIKEILQEFPAV 662

Query: 604  FAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISP 663
               P  LPP+R  DH I LK GA  PN+RPYR PHYQK  +EK++AE++ +  I+ S  P
Sbjct: 663  LKDPKGLPPRRNCDHVITLKSGAEPPNLRPYRVPHYQKEAMEKIIAELIESKEIQVSDIP 722

Query: 664  YSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGY 723
            YSSP ++VRKKDGSWR CVDYR LN  TV NKFP+P+I++LLDE+  A+VFSK+DL+SGY
Sbjct: 723  YSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDELNGAKVFSKLDLRSGY 782

Query: 724  HQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDD 783
            HQI M  +D+ KTAFRTH GHYE+ VMPFGLTNAP+TFQSLMN+VL P LRK  LVFFDD
Sbjct: 783  HQIRMATQDIPKTAFRTHLGHYEYQVMPFGLTNAPTTFQSLMNQVLAPFLRKYVLVFFDD 842

Query: 784  ILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKL 843
            ILIYS    EH  H+ QV+++++++ L +  KK  FG   + YLGH++S   VA DPKK+
Sbjct: 843  ILIYSKDWAEHKEHIRQVMKVLEENKLVVKLKKCAFGLPSVTYLGHIISQDGVATDPKKV 902

Query: 844  EAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSPQQAFEA 903
            E +  +P PK +  LR FLG+TGYYRRF+K+YG + RPL  +LKK+ FQW     +AFE 
Sbjct: 903  EKIATYPTPKSVTDLRKFLGMTGYYRRFIKNYGIVCRPLHDMLKKEGFQWEREQTEAFET 962

Query: 904  LKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYE 963
            LK  +   P L++PDF+K FV+E DA G G+GAVL Q G+PLA++S TL  ++ A+S+YE
Sbjct: 963  LKTHMCTSPVLSLPDFTKEFVIEADACGNGIGAVLMQSGRPLAYFSKTLGPKAAAQSIYE 1022

Query: 964  RELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQY 1023
            +E MA++ A+++WRHY+LG   II+TDQ+SLKF+  Q++V   Q K + KL  YD+ I+Y
Sbjct: 1023 KEAMAILEALKKWRHYVLGSRLIIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIEY 1082

Query: 1024 KPGKDNSAADAMSR--RSSYC-ALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHK 1080
            K GK+N  ADA+SR   +  C A++ +      + Q     D +   I+  +  + +   
Sbjct: 1083 KAGKENLVADALSRIPPAEQCQAITTVIPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDG 1142

Query: 1081 GYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKS 1140
             Y+ +   L YKG++ + + +     L + +H+S  GGHSG   TY R+ ++ YW G+K 
Sbjct: 1143 SYSQEAGLLRYKGRIYVGENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKK 1202

Query: 1141 DIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVV 1200
             +  F+ EC  CQ  K +++   GLL PL VP   W  ++MDF+ GLPKSNGKD ILVVV
Sbjct: 1203 AVEGFIRECPICQVTKAEHIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILVVV 1262

Query: 1201 DRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSG 1260
            DRLTKYAHFI + HP+T  +V  LF++ + RLHG P  I++DRD +F S  ++E+F+   
Sbjct: 1263 DRLTKYAHFIAMAHPYTVEQVVELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMK 1322

Query: 1261 TQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKM 1320
             +LKFS++YHPQTDGQTE VN+CLE YLR +T   P +W + L  AE+W+N+ Y+ S +M
Sbjct: 1323 VRLKFSTSYHPQTDGQTERVNQCLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQM 1382

Query: 1321 SPFQALYGREPPVLLQGTTIPSKIAAVNDLQV-GRDELLSDLRANLLKSQDMMRAYANKK 1379
            +PFQALYG  PP + +  ++P  ++    + +  +D ++  L+ +L ++Q  ++ YA++ 
Sbjct: 1383 TPFQALYGYPPPQINE-FSVPCNVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADRN 1441

Query: 1380 RRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSR 1439
            R +    +GD V+LKLQPYR+ +   + + KL  ++YGP+ I+ K+G VAY+L+LP  S 
Sbjct: 1442 RSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSN 1501

Query: 1440 VHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAVRETTMGQIEV---LIQW 1496
            +HPVFHVS LK  +G+   P     ++  D ++  EP +VL  R    G + V   L+ W
Sbjct: 1502 IHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLW 1561

Query: 1497 HSLPACENSWESAAQLHEAFPDF 1519
            H+L   E +WE A+ +   FP F
Sbjct: 1562 HNLSPSEATWEDASMIQSMFPSF 1584


>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
          Length = 1397

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 534/1205 (44%), Positives = 749/1205 (61%), Gaps = 119/1205 (9%)

Query: 345  VYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEE 404
            V ++L   ++ EK RKG CFRCD  +   H C NK+ RV+ + +  E E +E+     E 
Sbjct: 286  VQKELQLVKLDEKRRKGICFRCDGPWSKEHKCPNKELRVLTVINGFEMEVLESNSVEEEF 345

Query: 405  IEEAMELKHLSLNSIQGISSRKSLKVWGKL-KGTAIVVLVDCGATHNFISQSLAREMELQ 463
             +   +   LS +S  G+ S  ++K+ G + KG        C     F            
Sbjct: 346  HDSVAQFAELSFSSYMGLPSYTTIKMKGSICKGEW------CHTQFYF------------ 387

Query: 464  ITETPAYTVEVGDGHVVKSKGVCKNLSVQI-----QGFVVTQDFFLFGLRGVDVVLGLEW 518
                P + + +G G  V+  G+C  +++ +     Q   +T  F    L  VDV+LG+ W
Sbjct: 388  ----PNFHIRLGTGITVQGLGLCDKVTMTLPVGCGQELELTTHFITLDLGPVDVILGIAW 443

Query: 519  LAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQM 578
            L  LGD K N+E   L F    + V L+G+PEL   + S+ +           +  ++++
Sbjct: 444  LRTLGDCKVNWERHELSFLYHGRTVTLRGDPELDTFKMSLKS-----------FSTKFRL 492

Query: 579  LEKEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPH 638
              KE+  +  + + LK               LPP + ++HAI L  G    ++RPYRYPH
Sbjct: 493  QNKELEVSLNSHQNLKG--------------LPPIKGNEHAISLLPGTRAISVRPYRYPH 538

Query: 639  YQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPI 698
              K  +E LV+EML+ GIIR S SP+SSPV+LV+KKD SWRFCVDYRALN+ T+PNKFPI
Sbjct: 539  AHKEAMEGLVSEMLDNGIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPI 598

Query: 699  PVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAP 758
            P+ID+LLDE+  A +FSK+DL++GYHQI MK ED+EKT FRTH+GH+EFLVMPFGL+NAP
Sbjct: 599  PMIDQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVMPFGLSNAP 658

Query: 759  STFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSV 818
            +TFQS MN++LRP LRK  LVFFDDILIYS   +EH  HL  VL+++++H    N KK  
Sbjct: 659  ATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANRKKPY 718

Query: 819  FGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKI 878
                      H+     V+ DP K  AM  W  P+ +K LRGFLGLTGYYRRF+K YG +
Sbjct: 719  ----------HITQG--VSTDPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFLKGYGTL 766

Query: 879  ARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVL 938
            ARPLT+LLKKDSF W  S Q+AF+ALK  ++  P LA+PDF KV                
Sbjct: 767  ARPLTELLKKDSFVWSESAQEAFDALKRAMSTAPVLALPDFGKVH--------------- 811

Query: 939  TQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLT 998
                         L+ + Q K VYERELMA+V ++Q+W+HYL+GR F++ TDQKSLKFL 
Sbjct: 812  ------------GLTSKEQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQ 859

Query: 999  EQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRR------------SSYCALSV 1046
            EQ+ V     KW++KL  Y+F+I YK G DN AAD +SR              ++   +V
Sbjct: 860  EQREVSMDYQKWLTKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMAFTVPTV 919

Query: 1047 LKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPI 1106
            L+++D  E   E+  +  LQ +V + +   +    YT+K+ RL+ K +L++ K S  +P+
Sbjct: 920  LQLHDLYE---EIDSNAHLQHLVKECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKFLPL 976

Query: 1107 LCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLL 1166
            +  E+H+ LLGGHSG  +T +R+    +WEGM  DI+ FVA+C+ CQR K+  LSPAGLL
Sbjct: 977  ILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLL 1036

Query: 1167 QPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFL 1226
            QPLP+PTQVW D+S+DF+ GLP            DRL+KY HFI L+HPF A +VA +F+
Sbjct: 1037 QPLPIPTQVWEDISLDFVEGLP------------DRLSKYGHFIGLKHPFNAVDVARIFI 1084

Query: 1227 HEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEV 1286
            HEVV+LHGFP +IVSDRD+ FLSSFWK+ F++SGT+LK+S+A+HPQTDGQTEV+NR LE 
Sbjct: 1085 HEVVKLHGFPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLET 1144

Query: 1287 YLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAA 1346
            YLRC   + P+ W   LP AE W+NS+++ + K +PF+ LYGR+PP +++     +K   
Sbjct: 1145 YLRCFASAHPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTKNCE 1204

Query: 1347 VNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKK 1406
            +  L   RD +L+D++ +L+ +Q +M+   +K RR+V++   + VFLKL+PYR+ S+ K+
Sbjct: 1205 LEGLLKQRDLMLADIKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKR 1264

Query: 1407 MNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAAL 1466
            + +KL+ +Y+GP+ I+ +IG VAYRL+LP  S++H VFHVS LK  +G + Q  PLP  L
Sbjct: 1265 VCQKLAAKYFGPFEIMERIGKVAYRLKLPEGSKIHLVFHVSQLKQVLGDHHQVIPLPEVL 1324

Query: 1467 NEDHELLVEPESVLAVRETTMGQIEVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVK 1526
              D+E +V PE+VL  R    G +E L+ W  LP  E++WE A  L + FP   L+DK+ 
Sbjct: 1325 TADNEFVVVPEAVLETRYNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGLALQDKLH 1384

Query: 1527 HLGGG 1531
              GGG
Sbjct: 1385 VEGGG 1389



 Score =  104 bits (259), Expect = 3e-20
 Identities = 51/152 (33%), Positives = 87/152 (56%), Gaps = 1/152 (0%)

Query: 122 RKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQV 181
           + +++P+F G    Y WI ++ER+FR  G  E E++  + V++ G+ALSWY W  +    
Sbjct: 128 KNVEMPMFDGS-GIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYNWAISRGDF 186

Query: 182 TTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDI 241
            +W K K  ++ RF       P  +L  +KQ GSV E+V +FE  +  + G+D++    I
Sbjct: 187 VSWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGLDDQKLEGI 246

Query: 242 FVNGLKEEIAAEIKLYEPKSLTIMVKKALMVE 273
           F+NGL  E+   + +++P++L  MV  A  +E
Sbjct: 247 FLNGLTGEMQELVHMHKPQNLPEMVAVARSME 278


>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1475

 Score = 1013 bits (2619), Expect = 0.0
 Identities = 573/1508 (37%), Positives = 853/1508 (55%), Gaps = 103/1508 (6%)

Query: 48   EHERVEQRFRNLEAIVATMTRRRAGEHGDSDGEQERRRMEEERTVNGGQPGSVRDEADAR 107
            E E  E+     +A  A  ++      G S   Q  R ++++R +  GQ G     A+A 
Sbjct: 33   EAEEEEEAAATAKASKAVASQGGGDAAGTSSQAQGVRMLDQQRNIYLGQAGEGNQYAEA- 91

Query: 108  ENLQRTANAQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGK 167
                        +  +L+IP+F GE D   W+++ E++F + G   ++ V   +  L+G+
Sbjct: 92   ----------VLKGPRLEIPLFSGE-DPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGR 140

Query: 168  ALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGS-VEEFVGQFERF 226
            AL W+       QV  W ++   +  RF   S          +KQ G+ VE+++ +FE +
Sbjct: 141  ALKWFGGIGLPWQVIAWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDY 200

Query: 227  AGMLKG----IDEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKA 282
              ++K     + E++    F+ GL+ +I  ++   +P+ L         +E    A ++ 
Sbjct: 201  VDLVKRDHPYLQEQYLTSCFIGGLRADIKYDVCGQKPQGL---------LETYWAANARK 251

Query: 283  GIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPAR 342
             +G+ +R N +  P                                       +GG   R
Sbjct: 252  MVGNFNR-NRNQNP---------------------------------------LGGNQGR 271

Query: 343  GGVYRKLTGEEMKEKLRKGE--CFRCDEKFGPNHICKNKQ-FRVMLLRDDG--------- 390
               +R   G+   E  R+ E  C+ C E + P H CK KQ    +L  DDG         
Sbjct: 272  NANHR---GQNRGEGDRREEKKCWFCKEPWFPRHQCKIKQAIHALLEEDDGQEDKETSNT 328

Query: 391  ---EEEEIETLEPLTEEIEEAME-LKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCG 446
               EEE+ ET E  T E E   E L ++S  ++QG S   +  V  K+ G   V LVD G
Sbjct: 329  GGDEEEKKETEESATSENESPTEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGLVDSG 388

Query: 447  ATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFG 506
            +T  F+ Q  A      +  T    V V  G  +K+  +  ++S +IQG   T  F L  
Sbjct: 389  STTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQFKLLP 448

Query: 507  LRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKK-RASMNALVKAI 565
            L+G D++LG +W+     I  + ++  L    GNK ++L+   +  K  + S   L K +
Sbjct: 449  LKGYDIILGADWIYNYSPISLDLKQRILGITKGNKVILLQDFTKPNKHFQISGKRLEKML 508

Query: 566  QQQGEGYVLQYQMLEKEVAKAEET-PELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKE 624
            ++   G V+Q  ++ + V +     PE +  ++  FPA+   P  LPP+R  DH I+L+ 
Sbjct: 509  KKGALGMVIQVNVMSETVEEEGHVIPEDISDIIQQFPAVLKEPKGLPPKRECDHVINLQS 568

Query: 625  GASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDY 684
            GA  PNIRPYR PHYQK  +E ++ E++ +  I+ S SPYSSP ++VRKKDGSWR CVDY
Sbjct: 569  GAVPPNIRPYRVPHYQKEAMENIINELIESKEIQTSDSPYSSPAVMVRKKDGSWRMCVDY 628

Query: 685  RALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGH 744
            R LN  TV NKFP+P+I++LLDE+  AR+FSK+DL+SGYHQI M  +DV KTAFRTH GH
Sbjct: 629  RQLNAQTVKNKFPMPIIEDLLDELNGARIFSKLDLRSGYHQIRMAEKDVHKTAFRTHLGH 688

Query: 745  YEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQL 804
            YE+ VMPFGLTN P+TFQSLMN VL P LR+  LVFFDDILIYS T  EH+ H+  V+Q 
Sbjct: 689  YEYQVMPFGLTNDPATFQSLMNHVLAPFLRRFVLVFFDDILIYSKTRAEHLEHVKLVMQA 748

Query: 805  MDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGL 864
            +  + L I  KK  FG   + YLGHV+S   VA DPKK+  +  WP PKD+  +R FLG+
Sbjct: 749  LQDNHLVIKLKKCAFGLASVSYLGHVISQDGVATDPKKVGKIKNWPTPKDVTDVRKFLGM 808

Query: 865  TGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFV 924
            TGYYRRF++ YG I RP+  +LKK+ FQWG     AFE LKH L   P LA+PDF + F 
Sbjct: 809  TGYYRRFIQGYGTICRPIHDMLKKNGFQWGADQTTAFETLKHKLRTSPVLALPDFDQAFT 868

Query: 925  LETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRH 984
            +E DA G G+GAVL Q G+P+AF+S  L  ++  +S+YE+E MA++ A+++WRHY+LG  
Sbjct: 869  IEADACGVGIGAVLMQGGRPIAFFSKALGPKAAGQSIYEKEAMAILEALKKWRHYVLGSK 928

Query: 985  FIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCAL 1044
             II+TDQ+SLKF+  Q++V   Q K + KL  YD+ I+YK GK+N  ADA+SR     A+
Sbjct: 929  LIIKTDQQSLKFMMGQRLVEGIQHKLLLKLMEYDYTIEYKSGKENLVADALSRLPQKEAV 988

Query: 1045 SVL---KVNDFEEWQTEMLQDPKLQAIVHDLI------VDPEAHKGYTLKDHRLFYKGKL 1095
            +           EW  ++ +  +     H ++       DP+  + Y L+   L YKG++
Sbjct: 989  ADRCHPMTVVIPEWIVDIQRSYENDVQAHKILSLIGTAADPD--REYKLEAGLLKYKGRI 1046

Query: 1096 VLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRN 1155
             + + +     L   +H+S  GGHSG   T+ R+  + YW GM+ ++  F+ EC TCQ  
Sbjct: 1047 YVGEATDIRRQLITTYHSSSFGGHSGMRATHHRIKMLFYWHGMRGEVERFIRECPTCQIT 1106

Query: 1156 KFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHP 1215
            K +++   GLL PL +P   WT ++MDFI GLPKS GKD ILVVVDRLTKYAHFI L HP
Sbjct: 1107 KSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAHP 1166

Query: 1216 FTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDG 1275
            +   +V   F++ + +LHG P  I++DRD +F SS ++E+F+    +L+FS+AYHPQ DG
Sbjct: 1167 YDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMDG 1226

Query: 1276 QTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLL 1335
            QTE VN+CLE YLR +T   P KW + L  AE+W+N+ ++ + +M+PF+A+YG  PP + 
Sbjct: 1227 QTERVNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQIN 1286

Query: 1336 QGTTIPSKIAAVNDLQVGRDE-LLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLK 1394
            +  ++P  I+    + +   E +L+ L+ +L  +Q  M+ +A+K R + + ++GD V+LK
Sbjct: 1287 E-FSVPCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLK 1345

Query: 1395 LQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVG 1454
            L+PYR+ +   + + KL  ++YGP+ ++ KIG +AY+L+LP  +++HPVFHVS LK  +G
Sbjct: 1346 LKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLG 1405

Query: 1455 TNFQPQPLPAALNEDHELLVEPESVLAVRETTMGQIEV---LIQWHSLPACENSWESAAQ 1511
             +  P     ++  D ++  EP +VL  R      + V   LI W +L   E +WE A+ 
Sbjct: 1406 KHAIPMSNLPSVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEATWEDASV 1465

Query: 1512 LHEAFPDF 1519
            +   FP F
Sbjct: 1466 IQAMFPSF 1473


>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
            gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
            sativa (japonica cultivar-group)]
            gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
            sativa]
          Length = 1476

 Score = 1008 bits (2607), Expect = 0.0
 Identities = 575/1441 (39%), Positives = 815/1441 (55%), Gaps = 65/1441 (4%)

Query: 119  ERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETC 178
            + WR  + P + G+ D  ++I + E +F  +     E+       L   A  WY   +  
Sbjct: 64   KHWRP-EFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDN 122

Query: 179  NQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHY 238
                TW +FKE +  R+     S P   L A ++  +VE++  +F+        ++E   
Sbjct: 123  EGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQ 182

Query: 239  MDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPF 298
            + +F  GL   ++ +++  +P SL   +  A   E     +                  F
Sbjct: 183  VQLFTGGLLPPLSLQVQQQKPASLEEAMSLARQFELMEPYL------------------F 224

Query: 299  RSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKL 358
             +TT  + V      +  +G V    V+ +  +V   V G+P +     +L+  + +E+ 
Sbjct: 225  PATTSARGVLPTPAPRPSTGPV----VKPAPATVT--VEGRPVK-----RLSQAQQEERR 273

Query: 359  RKGECFRCDEKFGPNH--ICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSL 416
            R G C+ CDEK+  +H  +CK    R+  +     EE  +T+E  TEE    +E    SL
Sbjct: 274  RLGLCYNCDEKYSRSHNKVCK----RLFFVEGGAIEEGDDTVEDDTEEA--TVEAPVFSL 327

Query: 417  NSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGD 476
            +++ GI   K + +   L   ++V LVD G+THNFI +  A    L +   P  T  V +
Sbjct: 328  HAVAGIPLGKPILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVAN 387

Query: 477  GHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKA-NFEELTLK 535
            G  V   GV +   + IQG     D ++  L G D+VLG +W+A LG   A +    T+ 
Sbjct: 388  GEKVSCPGVLRRAPITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVS 447

Query: 536  FKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETPELLKA 595
            F+   + V  +  P    +RA ++A+       G   V          A   E P LL  
Sbjct: 448  FQHQGRTVSWQSLPP--HQRADVHAV-----STGTSLVAATGSSSSTPAPTTE-PALLDG 499

Query: 596  VLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAG 655
            +L  F  +FA P  LPP R  DHAIHL  GA    +RPYRYP   K+E+E+  A M+  G
Sbjct: 500  LLGSFDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQG 559

Query: 656  IIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFS 715
            +IR S S +SSPV+LV+K DGSWRFCVDYRALN IT+ + +PIPV+DELLDE+  A+ F+
Sbjct: 560  LIRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFT 619

Query: 716  KIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRK 775
            K+DL+SGYHQ+ M+AEDV KTAFRTH+G YEFLVMPFGL NAP+TFQ+LMN++LR  LR+
Sbjct: 620  KLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRR 679

Query: 776  CALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGT 835
              LVFFDDILIYS T  +H+ H+  VL L+ QH L +   K  FG   I YLGH++ A  
Sbjct: 680  FVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATG 739

Query: 836  VAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGP 895
            V+ DP K++A+  WP P+  +++RGFLGL GYYR+FV DYG IA PLT L KK+ F+W  
Sbjct: 740  VSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWSD 799

Query: 896  SPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDR 955
                AF ALKH +T  P LA+PDF K FV+E DAS  G GAVL Q+  PLAF+S  ++ R
Sbjct: 800  EVATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAPR 859

Query: 956  SQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLS 1015
             +A + YEREL+ +V A++ WR YL GR F++RTD  SLK+L +Q++    Q  W+ KL 
Sbjct: 860  HRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKLL 919

Query: 1016 GYDFEIQYKPGKDNSAADAMSRR----SSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHD 1071
            G+DF ++YK G  N  ADA+SRR     +  ALS  + +  E  +     +P L AI  D
Sbjct: 920  GFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIERLRAAQTTEPALVAI-RD 978

Query: 1072 LIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAA 1131
             I        + L+D  + +  +L +   S   P+L +   A    GH G  RT  RL  
Sbjct: 979  AIQAGTRSAPWALRDGMVMFDSRLYIPPSS---PLLHEILAAIHTDGHEGVQRTLHRLRR 1035

Query: 1132 VVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSN 1191
              +   M+  +++FV  CDTCQRNK ++L P GLL PLPVPT VW D+ +DF+  LP+  
Sbjct: 1036 DFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVG 1095

Query: 1192 GKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSF 1251
            GK  IL VVDR +KY HFIPL HP+TA  VA  F  ++VRLHG P ++VSDRD +F SSF
Sbjct: 1096 GKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSF 1155

Query: 1252 WKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFN 1311
            W+EL R++GT++  ++A HPQ+DGQTE  N+ + +YLRC TG RPR+WV  LPWAE+ +N
Sbjct: 1156 WRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYN 1215

Query: 1312 SNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDM 1371
            + Y  S + +PF+ +YGR+PP++       +++AAV      RDE L+D+R  L ++Q  
Sbjct: 1216 TAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLADVRYRLEQAQAT 1275

Query: 1372 MRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYR 1431
             + Y +K  R V Y++GD V L+L+     SL +    KL PRY+GPY +V  I  VA R
Sbjct: 1276 HKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVR 1335

Query: 1432 LELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAVR-ETTMGQI 1490
            LELP  +++H VFHV LLK  VG      P P AL   H   ++PE     R     G  
Sbjct: 1336 LELPPRAKLHDVFHVGLLKKFVGA---APPSPPALPAVHHGAIDPEPERVTRSRLARGVR 1392

Query: 1491 EVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGGIDEHRPSI-KKVYERRNKR 1549
            +VL+ W    A   +WE      E +P F LED++      ++E R  +  + Y RR++ 
Sbjct: 1393 QVLVHWKGESAASATWEDLDTFKERYPAFQLEDEL-----ALEEGRDVMWGRTYARRHRA 1447

Query: 1550 K 1550
            +
Sbjct: 1448 R 1448


>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
            gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1611

 Score =  998 bits (2581), Expect = 0.0
 Identities = 550/1432 (38%), Positives = 830/1432 (57%), Gaps = 88/1432 (6%)

Query: 123  KLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVT 182
            +L+I +F GE D   W+++ E++F + G   ++ V   +  L G+A  W++      QV 
Sbjct: 231  RLEISLFTGE-DPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQVI 289

Query: 183  TWTKFKEAMLERFQLTSNSSPFAALLALKQEG-SVEEFVGQFERFAGMLKG----IDEEH 237
            TW ++   +  RF   +          +KQ G +VE+++ +FE +  +++     + E +
Sbjct: 290  TWPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDHPYLQEPY 349

Query: 238  YMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPP 297
            +   F++GL+ +I  ++   +P+ L                                   
Sbjct: 350  FTSCFISGLRGDIKHDVCGQKPQGL----------------------------------- 374

Query: 298  FRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEK 357
              S  + K+ +     +  + +  +  +Q+         GG   +  VY K    +  +K
Sbjct: 375  LESYWYAKNYEKAANSRKAAANFNRNRLQT---------GGNTGKN-VYNKGQPRQEGDK 424

Query: 358  LRKGECFRCDEKFGPNHICKNKQFRVMLL----------RDDGEEEEI------ETLEPL 401
              + +C+ C E + P H CK KQ    LL           D  EEEEI      E L   
Sbjct: 425  KEEKKCWFCKEPWFPRHQCKVKQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQ 484

Query: 402  TEEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREME 461
            TE ++E  EL  +S +++ G++   +  V  K+ G   V LVD G+T  F+    A + +
Sbjct: 485  TENVQE--ELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQ 542

Query: 462  LQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAG 521
              +  T    V V  G  +KS+ +   +  +IQG   T  F L  L   D++LG +W+  
Sbjct: 543  CTLENTKMRKVIVAGGGELKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFK 602

Query: 522  LGDIKANFEELTLKFKLGNKKVVLKGEPELLKK-RASMNALVKAIQQQGEGYVLQYQMLE 580
               I  +  +  +K   G +++ ++   +  K  + S   + K I++   G V+Q   + 
Sbjct: 603  YSPITLDLRKREMKITKGGRELEIQDFTKPGKYFQVSNKKMGKMIKKGALGCVIQINAIT 662

Query: 581  KEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQ 640
             +       P+ ++ VL  FP +   P  LPP+R  DH I+LK G+  PN+RPYR PH+Q
Sbjct: 663  DQSNVEVGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQ 722

Query: 641  KNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPV 700
            K  +E ++ E+     IR S SPY SP ++VRKKDGSWR CVDYR LN  T+ NKFP+P+
Sbjct: 723  KGAMEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPI 782

Query: 701  IDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPST 760
            I++LLDE+  A+VFSK+DL+SGYHQI M   D+ KTAFRTH GHYE+ VMPFGLTNAP+T
Sbjct: 783  IEDLLDELHGAKVFSKLDLRSGYHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPAT 842

Query: 761  FQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFG 820
            FQ+LMN+VL P LRK  LVFF DILIYS T  EH+ H+  V+Q +  + L +  KK  FG
Sbjct: 843  FQALMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHIKLVMQALSANQLVVRLKKCEFG 902

Query: 821  RGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIAR 880
              ++ YLGH++S+  V+ DPKK+  +     PK++  +R FLG+ GYYRRF+K YG I R
Sbjct: 903  LDRVSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREFLGMAGYYRRFIKGYGVICR 962

Query: 881  PLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQ 940
            PL  LLKKD F+WG + Q+AFE LK  +   P LA+PDFS+ FV+ETDA G G+GAVL Q
Sbjct: 963  PLHDLLKKDGFKWGDTQQEAFELLKEKMCNSPVLALPDFSQPFVIETDACGIGIGAVLMQ 1022

Query: 941  EGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQ 1000
            +G+PLA++S  L  ++ A+SVYE+E +A++ A+++WRHY+LG   II+TDQ+SLKF+  Q
Sbjct: 1023 KGRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFMMSQ 1082

Query: 1001 QVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVN-DFEEWQTEM 1059
            ++V   Q K + KL  +D+ I+YK GK+N  ADA+SR  +      L +     EW  ++
Sbjct: 1083 RLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNLKEEQCLPITVVVPEWVQDI 1142

Query: 1060 LQDPKLQAIVHDLIV------DPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHA 1113
             +  +     H ++       DPE H  Y L+   L YKG++ + + +    +L + +HA
Sbjct: 1143 KRSYEEDIFAHKILSLIETDGDPERH--YKLESGLLKYKGRIYVGETTEIRMLLLEAYHA 1200

Query: 1114 SLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPT 1173
            S  GGHSG   TY R+  + YW G+K  +  ++ EC TCQ  K +++   GLL PL VP 
Sbjct: 1201 SYFGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPD 1260

Query: 1174 QVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLH 1233
              WT ++MDFI GLPKS GKD ILVVVDRLTKYAHF+ L HP+T  +V  +F+  + +LH
Sbjct: 1261 MAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLH 1320

Query: 1234 GFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTG 1293
            G P  IV+DRD +F S+F++E+F+    +L+FS+A+HPQTDGQTE VN+CLE YLR +T 
Sbjct: 1321 GMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTF 1380

Query: 1294 SRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVG 1353
              P+KW + L  AE+W+N+ Y+ S +M+PFQALYG  PP + +   IP  ++   + +V 
Sbjct: 1381 QEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITE-FAIPCNMS--EEARVT 1437

Query: 1354 RDE---LLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEK 1410
             ++   +L  L++++ ++Q  ++ YA+K R +   ++GD V+LKLQPYR+ ++  + + K
Sbjct: 1438 LEDKALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLK 1497

Query: 1411 LSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDH 1470
            L  +YYGP+ ++ K+GAVAY+L+LP  + +HPVFHVS LK  +G    P P   A+  D 
Sbjct: 1498 LRSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDG 1557

Query: 1471 ELLVEPESVLAVRETTMGQIEV---LIQWHSLPACENSWESAAQLHEAFPDF 1519
            ++  EP +VL  R        V   LI W +L   E +WE A+ +  AFP+F
Sbjct: 1558 QIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQAAFPNF 1609


>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1522

 Score =  994 bits (2569), Expect = 0.0
 Identities = 582/1471 (39%), Positives = 817/1471 (54%), Gaps = 114/1471 (7%)

Query: 87   EEERTVNGGQPGSVRDEADARENLQRTANAQTERW-RKLDIPVFQGEEDAYSWIQKLERY 145
            E E  V  GQP  VRD +D +             W  K+D P F G  D   W+   E Y
Sbjct: 103  EVEVPVRSGQP-PVRDNSDVQGR---------RSWVPKMDFPKFDGT-DVCVWVDNCETY 151

Query: 146  FRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFA 205
            F L   TE  KV A  + + G A  WYQ W+      TW + +EA+L  F++    +   
Sbjct: 152  FALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPTWEQLREAVLNEFEINIKRAKME 211

Query: 206  ALLALKQEGSVEEFVGQFERFAGMLKGIDEE----HYMDIFVNGLKEEIAAEIKLYEPKS 261
             LL L Q G+V E+  +F +    ++  D        +  FV GLK+E+   +   EP++
Sbjct: 212  ELLLLTQTGTVSEYRSKFLQLVYHIRLYDPATSGLFLVSRFVMGLKDELRCFVAAQEPET 271

Query: 262  LTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVT 321
            +    + AL  E           G+            R   F+K V              
Sbjct: 272  VHQAARVALAFE-----------GAFCN---------RKVAFKKDV-------------- 297

Query: 322  QGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRK-GECFRCDEKFGPNHIC---K 377
                    G+V     GK   G +++    +++KE  R  G CF+C EK+ P H C   +
Sbjct: 298  --------GNVKFGDKGKVPVGDLWK---AQQLKEYRRTHGLCFKCGEKYSPAHTCGKTE 346

Query: 378  NKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGT 437
              Q + M +    +    E L+ +T   +   +   LSL ++ G S+  SL++       
Sbjct: 347  GAQLKTMEVSSSDDVLTDEILDVVTAFEQLPDDNMLLSLQAVAGTSATHSLQLRALAGNQ 406

Query: 438  AIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFV 497
             +++LVD G++H+FI+  L  ++ L     P  TV+V +G  ++ +      S  IQG  
Sbjct: 407  VVIILVDSGSSHSFINADLCSKLNLSTDPIPVSTVKVANGETLQCEAQVSEFSWWIQGCT 466

Query: 498  VTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRAS 557
                  +  + G D+VLG++WL+    +  N+ +  L+F    K V L+G          
Sbjct: 467  FVSSLKVLSMGGHDIVLGMDWLSKFSPMTCNWADRWLEFTYQGKLVKLQG---------- 516

Query: 558  MNALVKAIQQQGEGYVLQYQMLEKEVAKA----------------EETPELLKAVLSDFP 601
                +++ Q Q    V   QM++ +V                      P  ++ VL  + 
Sbjct: 517  ----IQSHQLQYLSEVSSDQMMKWQVGNDIWALAVVDCLSSPLCDSAVPASIQDVLQKYS 572

Query: 602  ALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSI 661
            ++F     LPP R  DH+I L  GA   N RPYRY   QK+EIEK V EML +G+I  S 
Sbjct: 573  SVFQPSAGLPPHRELDHSIPLVPGAIPVNSRPYRYSPAQKDEIEKQVQEMLESGLISRSC 632

Query: 662  SPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKS 721
            SP++SPV+LV+KKD +WRFCVDYR LN IT+ NKFP+P++DELLDE+   R FSK+DL+S
Sbjct: 633  SPFASPVLLVKKKDNTWRFCVDYRRLNAITIKNKFPLPIVDELLDELAGTRFFSKLDLRS 692

Query: 722  GYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFF 781
            GYHQI MK  D EKTAF+TH GH++F VMPFGLTNAP+TFQ LMN +  P LRK  LVF 
Sbjct: 693  GYHQIRMKETDEEKTAFKTHHGHFQFRVMPFGLTNAPATFQCLMNSIFEPYLRKFVLVFM 752

Query: 782  DDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPK 841
            DDIL+YS ++E H +HL  VLQ++ QH L     K  F   Q+EYLGH++SA  VA DP+
Sbjct: 753  DDILVYSPSLETHAIHLDTVLQVLQQHQLSAKLSKCSFAASQLEYLGHIISADGVATDPE 812

Query: 842  KLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDS-FQWGPSPQQA 900
            K   M  WPVP ++  LRGFLGLTGYYR+FVK+YG IA+PLT LL+K++ F W  S   A
Sbjct: 813  KTRIMRDWPVPTNVTELRGFLGLTGYYRKFVKNYGVIAKPLTVLLQKNAKFIWTDSANSA 872

Query: 901  FEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKS 960
            F  LKH +   P LA+PDF+K FVLETDA  TG+GAVL+QEG P+AF+S  L   +Q  S
Sbjct: 873  FLQLKHAMCSTPVLALPDFTKTFVLETDACATGIGAVLSQEGHPIAFYSKALGMANQKLS 932

Query: 961  VYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFE 1020
            +YE+E +A++ A+ +WR YLL   F I+TD +SL  L +Q +  E Q K ++KL G  ++
Sbjct: 933  IYEKEFLAIMMAIDKWRSYLLRGPFTIKTDHQSLCHLDDQILGSELQRKAMTKLIGLQYK 992

Query: 1021 IQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQ----DPKLQAIVHDLIVDP 1076
             QYK G DN +ADA+SR      L       + +W  E++     D   Q ++ +L V  
Sbjct: 993  FQYKRGVDNKSADALSRVGH---LFATVSGPYPKWIQEVVNSYATDADAQQLLTELAVSS 1049

Query: 1077 EAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWE 1136
               KG+ L    +    K+ +   S     L   FH+S +GGHSG   TY RL  +  W 
Sbjct: 1050 PNDKGFMLSGGLIKKHDKIWVGANSGLQSKLIAVFHSSPIGGHSGIHATYHRLKKLFVWT 1109

Query: 1137 GMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTI 1196
            GMK  + +FV +C  CQ+ K ++    GLLQPLP+P   W D+SMDFI GLP S G +TI
Sbjct: 1110 GMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQPLPIPEGSWQDISMDFIEGLPLSKGANTI 1169

Query: 1197 LVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELF 1256
            LVVVDR TKYAHF+ L+HPF+A +VA LFL  V +L+G P +IVSDRD +F SSFWK LF
Sbjct: 1170 LVVVDRFTKYAHFLSLKHPFSASQVAELFLDRVAQLYGMPKSIVSDRDRVFTSSFWKTLF 1229

Query: 1257 RVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNR 1316
               G  L  S+AYHPQ+DGQTE VN+CLE+YLRC   + P KW + LP A+FW+N++++ 
Sbjct: 1230 ARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLRCAVANTPSKWASWLPLAQFWYNTSFHT 1289

Query: 1317 SAKMSPFQALYGRE------PPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 1370
            S K SP +ALYG +      P + ++ +   S       L   R    S L+ +L ++Q+
Sbjct: 1290 SLKCSPHKALYGSDPSYGLLPSLSVEASDESSSSKDATALLKARSFYSSTLQHHLARAQN 1349

Query: 1371 MMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 1430
             M+  A+ KR    +Q+GD VFLKLQPY + S+  +   KL+ +Y+GP+PI+ ++G+VAY
Sbjct: 1350 HMKQVADSKRTLRVFQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERVGSVAY 1409

Query: 1431 RLELPAHSRVHPVFHVSLLKTAVGTNFQP-QPLPAALNEDHELLVEPESVLAVRETTMGQ 1489
            +L+LP  S+VH VFHVS LK +V ++      LP  +  D E L+ P  +L  R    G 
Sbjct: 1410 KLQLPPASQVHSVFHVSQLKPSVPSHVPVYTSLPDVVALDVEDLI-PTEILDCRMVKKGN 1468

Query: 1490 ---IEVLIQWHSLPACENSWESAAQLHEAFP 1517
               ++V ++W SLP    +WE    +   FP
Sbjct: 1469 AAIVQVRVRWGSLPDNMATWEDYDVIRTRFP 1499


>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
            gi|25403233|pir||G86474 probable protein gypsy/Ty3
            element polyprotein [imported] - Arabidopsis thaliana
          Length = 1447

 Score =  979 bits (2530), Expect = 0.0
 Identities = 574/1520 (37%), Positives = 855/1520 (55%), Gaps = 138/1520 (9%)

Query: 35   RRIRDEERRERAIEHER-VEQRFRNLEAIVA----TMTRRRAGEHGDSDGEQERRRMEEE 89
            R  ++E+ + + +E E  +  R   LE +VA    +M +  A           +R  E E
Sbjct: 5    RSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRVTEGE 64

Query: 90   RTVNGGQP----------GSVRDEADAR-----ENLQRTANAQ---TERWRKLDIPVFQG 131
            + ++   P          G V  + D +     E +++  N Q     R  K+D P F G
Sbjct: 65   KVLDRSVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLGKIDFPRFDG 124

Query: 132  EEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWY----QWWETCNQVTTWTKF 187
                  W+ K+E +F +    EE KV+ + +  D  A +W+    Q     +    W ++
Sbjct: 125  SR-INEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEY 183

Query: 188  KEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFVNGLK 247
             + + +RF+  +   P A L  L++   + E+  QFE     L  + EE+ + +++ GL+
Sbjct: 184  VKLLKDRFE-DACDDPMAELKKLQETDGIVEYHQQFELIKVRLN-LSEEYLVSVYLAGLR 241

Query: 248  EEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSV 307
             +    ++++EPK++   ++     E+ +                  K    ST  QK  
Sbjct: 242  TDTQMHVRMFEPKTVRDCLRLGKYYERAHP-----------------KKTVSSTWSQKGT 284

Query: 308  QIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKGECFRCD 367
            +                                  GG YR +   E K     G C+ CD
Sbjct: 285  R---------------------------------SGGSYRPVKEVEQKSD-HLGLCYFCD 310

Query: 368  EKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSRKS 427
            EKF P H   +K  +  L R D +EE  + +E L+++  E   +  +S+N++ GIS  K+
Sbjct: 311  EKFTPEHYLVHK--KTQLFRMDVDEEFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKT 368

Query: 428  LKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCK 487
            + V G +    + +L+D G+THNFI  ++A ++   +       V V DG  +   G  K
Sbjct: 369  MGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIK 428

Query: 488  NLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKG 547
              + ++Q      D  L  L+GVD+VLG++WL  LG I   F++L ++F   N++V L G
Sbjct: 429  GFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHG 488

Query: 548  ----------EPELLKKRASMNAL----VKAIQQQGEGYVLQYQMLEKEVAKAEETPELL 593
                        +L K +A    L    V+ +    E  +     L  +V +      ++
Sbjct: 489  IITGSVRDIKAHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEES----VV 544

Query: 594  KAVLSDFPALFAAPTELPPQR-RHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEML 652
            + ++ +FP +FA PT+LPP R +HDH I L EGA+  N RPYRY  +QK+EI+K+V +M+
Sbjct: 545  QNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMI 604

Query: 653  NAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPAR 712
             +G I+ S SP++SPV+LV+KKDG+WR CVDY  LN +TV ++F IP+I++L+DE+G + 
Sbjct: 605  KSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSV 664

Query: 713  VFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPV 772
            VFSKIDL++GYHQ+ M  +D++KTAF+TH GH+E+LVM FGLTNAP+TFQSLMN V R  
Sbjct: 665  VFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDF 724

Query: 773  LRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLS 832
            LRK  LVFFDDILIYS ++EEH  HL  V ++M  H L        F +G  E+LGH +S
Sbjct: 725  LRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFIS 776

Query: 833  AGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQ 892
            A  +  DP K++A+  WP P  +K +RGFLG  GYYRRFV+++G IA PL  L K D F 
Sbjct: 777  AREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFC 836

Query: 893  WGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATL 952
            W    Q AF+ LK  L   P LA+P F K F++ETDA G G+ AVL Q+G PLA+ S  L
Sbjct: 837  WSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQL 896

Query: 953  SDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWIS 1012
              +    S+YE+EL+A + AV++WRHYLL  HFII+TDQ+SLK+L EQ++    Q +W+ 
Sbjct: 897  KGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLP 956

Query: 1013 KLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEMLQDPKLQAI 1068
            KL  +D+EIQY+ GK+N  ADA+SR       + ALS+++ +  +E Q     D  L+ I
Sbjct: 957  KLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVLKDI 1016

Query: 1069 VHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRR 1128
            +  L   P+A K Y+     L  K K+V+         L +  H S +GG SG   +++R
Sbjct: 1017 ISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQR 1076

Query: 1129 LAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLP 1188
            + ++ YW+GM  DI+ F+  C TCQ+ K DN +  GLLQPLP+P ++W DVSMDFI GLP
Sbjct: 1077 VKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLP 1136

Query: 1189 KSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFL 1248
             S GK  I+VVVDRL+K AHF+ L HP++A  VA  FL  V + HG PT+IVSDRD LF 
Sbjct: 1137 NSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFT 1196

Query: 1249 SSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEF 1308
            S FWKE F++ G +L+ SSAYHPQ+DGQTEVVNRCLE YLRC+  +RP  W   LP AE+
Sbjct: 1197 SDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEY 1256

Query: 1309 WFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKS 1368
            W+N+NY+ S++M+PF+ +YG+ PP+ L      SK+A V      R+ +L  L+ +L+++
Sbjct: 1257 WYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRA 1316

Query: 1369 QDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAV 1428
            Q  M+ +A++ R +  + IGD V++KLQPYR++S+  ++N+KLSP+Y+GPY I+ K G V
Sbjct: 1317 QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV 1376

Query: 1429 AYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAV-RETTM 1487
                               ++     +   P  LP    +  E ++E + V    R  TM
Sbjct: 1377 -------------------MVGNVTTSTQLPSVLPDIFEKAPEYILERKLVKRQGRAATM 1417

Query: 1488 GQIEVLIQWHSLPACENSWE 1507
                VL++W   P  E +W+
Sbjct: 1418 ----VLVKWIGEPVEEATWK 1433


>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
            gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1463

 Score =  978 bits (2529), Expect = 0.0
 Identities = 566/1419 (39%), Positives = 785/1419 (54%), Gaps = 69/1419 (4%)

Query: 120  RWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCN 179
            R +K D P + G  D   ++ K E YFR      EE+V      LD    +WY       
Sbjct: 56   RPKKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDE 115

Query: 180  QVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYM 239
               TW +FKE +  RF     S+P   L   ++ G+VEE+  +F+        +DE   +
Sbjct: 116  GTPTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRV 175

Query: 240  DIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFR 299
             +F  GL   ++  ++++ P++L   +  A  VE                 +    PP R
Sbjct: 176  QLFTGGLLPPLSHAVRIHHPETLAAAMSLARQVE-------------LMERDRPAPPPLR 222

Query: 300  STTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLR 359
            +   +  +     + +      Q  + +   +  +   G+ A     R+LT EEM E+ R
Sbjct: 223  APP-RGLLPAPAPRLALPAPAQQLALPAPPAAAPQ---GRDAANP--RRLTPEEMAERCR 276

Query: 360  KGECFRCDEKF--GPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLN 417
            +G CF C+EKF  G N  C+   F       DG E +   +E          E    SL+
Sbjct: 277  QGLCFNCNEKFTRGHNRFCRRLFFV------DGVEIDDVAIEGDAAAAAGDTEAPVFSLH 330

Query: 418  SIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDG 477
            ++ G+    ++++   +   +++ L+D G+TH+FI +  AR   L I  +P  T  V +G
Sbjct: 331  AVAGVPIADTIQLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANG 390

Query: 478  HVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFK 537
              V   GV ++ +  I G     D F+  L G DVVLG  WL  LG I  +F   ++ F+
Sbjct: 391  ERVACPGVIRDAAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQ 450

Query: 538  LGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETPELLKAVL 597
               ++   KG                                 + +A A  T  LL  +L
Sbjct: 451  RDGQRFAWKGVASTSTTHL------------------------RTLAAASGT--LLDELL 484

Query: 598  SDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGII 657
              +  +F  PT LPP R  DHAI LK  ++   +RPYRYP   K+E+E+  A M+  G++
Sbjct: 485  VAYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELERQCAAMIEQGVV 544

Query: 658  RPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKI 717
            R S SP+SSPV+LV+K DGSWRFCVDYRALN +TV + FPIPV+DEL      AR F+K+
Sbjct: 545  RRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVVDELHG----ARFFTKL 600

Query: 718  DLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCA 777
            DL+SGYHQ+ M+ EDV KTAFRTH+G YEFLVMPFGL NAP+TFQ+LMN+VLRP LR+  
Sbjct: 601  DLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRPFLRRFV 660

Query: 778  LVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVA 837
            LVFFDDILIYS T  +H+ HL  VL ++ QH L +   K  FG   + YLGHV+S   VA
Sbjct: 661  LVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHVISEAGVA 720

Query: 838  ADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSP 897
             DP K++A+  W VP+  +++R FLGL GYYR+FV +YG IA PLT L KKD F W    
Sbjct: 721  MDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKDGFSWTEDT 780

Query: 898  QQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQ 957
              AF+ALK  +T  P LA+PDF+K F +E DAS  G GAVL Q+G P+AF+S  +  R +
Sbjct: 781  AAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVAFFSRPVVLRHR 840

Query: 958  AKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGY 1017
            A + YEREL+ +V AV+ WR YL GR F+++TD  SLK+L +Q++    Q  W+ KL G+
Sbjct: 841  ALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGF 900

Query: 1018 DFEIQYKPGKDNSAADAMSRR----SSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHDLI 1073
            DF ++YKPG  N+ ADA+SRR     +  ALS  + +   +      QDP L A+  D +
Sbjct: 901  DFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISKLHDAQRQDPALTAL-RDEV 959

Query: 1074 VDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVV 1133
                    + L D  L Y   L +   S   P+  +   A+   GH G  RT  RL    
Sbjct: 960  SAGTRTGPWALVDDLLQYNSWLYIPPAS---PLAREIIEATHEDGHEGVKRTMHRLRREF 1016

Query: 1134 YWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGK 1193
            +   MK  ++D+V  C  CQR K ++LSPAGLL PLPVP  VWTD+++DFI  LP+  GK
Sbjct: 1017 HIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDIALDFIEALPRVRGK 1076

Query: 1194 DTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWK 1253
              IL VVDR +KY HFIPL HP++A  VA  F  E+V LHG P ++VSDRD +F S+FW+
Sbjct: 1077 SVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSMVSDRDPIFTSTFWR 1136

Query: 1254 ELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSN 1313
            EL R+ GT+L  ++A+HPQ+DGQ+E  NR + +YLRCLTG RPR+W+  LPWAEF FN+ 
Sbjct: 1137 ELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFIFNTA 1196

Query: 1314 YNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMR 1373
            Y  S + +PF+ +YGR+PP +       +++AAV      R E L D+R  L ++Q + +
Sbjct: 1197 YQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLFDIRYRLEQAQAVQK 1256

Query: 1374 AYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLE 1433
             + +K  R V YQ+GD   L+L+     SL +    KL PR+YGPY I   I  VA RLE
Sbjct: 1257 LHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPYRITELINDVAVRLE 1316

Query: 1434 LPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAVR-ETTMGQIEV 1492
            LPA +R+H VFH+ LLK   G    P   P AL   H   + PE   AVR     G  + 
Sbjct: 1317 LPAGARLHDVFHIGLLKKFHG---PPPGAPPALPPLHHGAIAPEPERAVRFRLARGVRQA 1373

Query: 1493 LIQWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGG 1531
            L+QW        +WE    L   +P   LED++    GG
Sbjct: 1374 LVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEGG 1412


>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1382

 Score =  978 bits (2529), Expect = 0.0
 Identities = 558/1417 (39%), Positives = 784/1417 (54%), Gaps = 79/1417 (5%)

Query: 124  LDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVTT 183
            +D P + G  D   ++ + E YF  +   EEEKV      L+  A  WY   +       
Sbjct: 1    MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60

Query: 184  WTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFV 243
            W +FK+ +  RF     S+P   L   ++ G+V+E+   F+        + E   + +F 
Sbjct: 61   WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQLVQLFT 120

Query: 244  NGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTF 303
             GL   ++  ++++ P+SL   +  A  VE   L    A + +        +P  R    
Sbjct: 121  GGLLPPLSHAVRIHNPQSLAAAMSLARQVELMELD-KPAPVPA--------RPAPRGLLP 171

Query: 304  QKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKGEC 363
                ++       S  V              ++  KP +     +L+ EE  E+ R G C
Sbjct: 172  ALPQRLALPAPPASAPVA-------------KMEAKPVK-----RLSQEEQAERRRLGLC 213

Query: 364  FRCDEKF--GPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQG 421
            + CDEK+  G N +C+   +   +   D E+  ++         ++  E    SL ++ G
Sbjct: 214  YNCDEKYSRGHNRVCRRIFYIDGVTLTDAEDAALDA--------DQDGEAPVFSLQAVAG 265

Query: 422  ISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVK 481
            +    +++V   L    +  L+D  +THNFI++  AR   L I   P  T  V +G  ++
Sbjct: 266  VPICDTMQVRVMLGAVTLTALLDTSSTHNFIAEEAARRTNLAIQPKPRLTATVANGEKIQ 325

Query: 482  SKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNK 541
              GV +   + I G     D F+  L G D+VLG +W+  LG I  +F   T+ F     
Sbjct: 326  CPGVLRQAPITIDGEEFHVDLFVMPLAGYDLVLGTQWMVTLGPITWDFTARTMSFS---- 381

Query: 542  KVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETPELLKAVLSDFP 601
                         R  M      +  + E  V         V  A E   LL  +L+ F 
Sbjct: 382  -------------RHGMEVRWSDVAARPEPTVA--------VIAASEV--LLDGLLASFE 418

Query: 602  ALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSI 661
             +FA P+ LPPQR  DH+I LK GA    +RPYRY    K+E+E   A ++  GI+R S 
Sbjct: 419  GVFAEPSGLPPQRARDHSIVLKPGALPVAVRPYRYLAAHKDELELQCAAIIEQGIVRRSD 478

Query: 662  SPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKS 721
            S +SSPV+LV+K DGSWRFCVDYRALN +TV + FPIPVIDELLDE+  AR F+K+DL+S
Sbjct: 479  SAFSSPVLLVKKPDGSWRFCVDYRALNALTVKDAFPIPVIDELLDELHGARFFTKLDLRS 538

Query: 722  GYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFF 781
            GYHQ+ M+  DV KTAF TH+G YEFLVMPFGL NAP TFQ+LMN+VLRP LR+  LVFF
Sbjct: 539  GYHQVRMRPADVHKTAFHTHDGLYEFLVMPFGLCNAPVTFQALMNDVLRPFLRRFVLVFF 598

Query: 782  DDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPK 841
            DDILIYS T  +H+ H+  VL  + +H L +   K  F    + YLGHV+S   VA DP 
Sbjct: 599  DDILIYSKTWADHLRHIRAVLSELQRHQLFLKRAKCAFASASVAYLGHVISEAGVAMDPA 658

Query: 842  KLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSPQQAF 901
            K++A+  WP P+  +++R FLGL GYYR+FV +YG IA PLT LLKKDSF W      AF
Sbjct: 659  KVQAVRDWPAPRSARAVRSFLGLAGYYRKFVHNYGAIAAPLTALLKKDSFSWSGEAATAF 718

Query: 902  EALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSV 961
            +ALK  +T  P LA+PDFSK F++E DAS  G GAVL Q+  P+AF+S  ++ R +A + 
Sbjct: 719  DALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVLVQDSHPVAFFSRPVAPRHRALAA 778

Query: 962  YERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEI 1021
            YEREL+  V AV+ WR YL GR F+++TD  SLK+L +Q++    Q  W+ KL G+DF +
Sbjct: 779  YERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFTV 838

Query: 1022 QYKPGKDNSAADAMSRR-----SSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDP 1076
            +YKPG  N+ ADA+SRR      +  ALS  + +  +  +     DP L A +H+ +   
Sbjct: 839  EYKPGHANAVADALSRRDTPEDGTILALSAPRFDFVDRLRHAQTTDPALVA-MHEELTSG 897

Query: 1077 EAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWE 1136
                 +   D  + Y G+L +   S  +P L    H     GH G  RT  RL    ++ 
Sbjct: 898  SQALPWAAVDGMIQYSGRLYIPPASPLLPELMAAVHEE---GHEGVQRTLHRLRRDFHFP 954

Query: 1137 GMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTI 1196
             MK  ++D V  C TCQR K ++L PAGLL PLPVP  VWTD+++DF+  LP+  GK  I
Sbjct: 955  NMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDIALDFVEALPRVRGKSVI 1014

Query: 1197 LVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELF 1256
            L VVDR +KY HFIPL HP++A  VA  F  ++VRLHG P +IVSDRD++F S FW+EL 
Sbjct: 1015 LTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMPQSIVSDRDTVFTSHFWRELM 1074

Query: 1257 RVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNR 1316
             + GT+L  ++A+HPQ+DGQ+E  NR + +YLRCLTG RPR+W+  LPWAE+ FN+ Y  
Sbjct: 1075 WLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRPRQWLQWLPWAEYVFNTAYQT 1134

Query: 1317 SAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYA 1376
            S + +PF+ +YGR+PP +       +++AAV      RD+ L+D+R+ L ++Q   + + 
Sbjct: 1135 SLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLADIRSRLEQAQATQKRHY 1194

Query: 1377 NKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPA 1436
            +K  R V YQ+GD   L+L+     SL + +  KL PR+YGPY I   I  VA RL LP 
Sbjct: 1195 DKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFYGPYRITELINDVAVRLALPP 1254

Query: 1437 HSRVHPVFHVSLLKTAVGT-NFQPQPLPAALNEDHELLVEPESVLAVR-ETTMGQIEVLI 1494
             +R+H VFH+ LLK   G+    P PLPA     H   V PE   AV+     G  ++LI
Sbjct: 1255 RARLHDVFHIGLLKKFHGSPPDAPPPLPAV----HHGAVVPEPERAVKTRLARGVRQLLI 1310

Query: 1495 QWHSLPACENSWESAAQLHEAFPDFPLEDKVKHLGGG 1531
            QW        +WE A      +PDF L D++    GG
Sbjct: 1311 QWKGESPASATWEDADAFIAKYPDFQLGDELALDEGG 1347


>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
            gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1608

 Score =  956 bits (2470), Expect = 0.0
 Identities = 558/1417 (39%), Positives = 804/1417 (56%), Gaps = 55/1417 (3%)

Query: 124  LDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVTT 183
            +  P F G+     W    E YF + G   +  V+   +   G A  W Q   +     T
Sbjct: 148  MSCPQFNGDNPQL-WKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGAT 206

Query: 184  WTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGI----DEEHYM 239
            W +  + +  RF      +     + + Q  SV ++V +F+     L       D  +++
Sbjct: 207  WFELCDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFV 266

Query: 240  DIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFR 299
              FV+GLK+ I   + +  P+ L      AL+ E+     +  G+ S S   +       
Sbjct: 267  TKFVDGLKDHIRVVVMVQRPQDLDSACTVALLQEE-----ALEGVQSVSNKKNE------ 315

Query: 300  STTFQKSVQIDTGQKSGSGSVTQGTVQSSS---GSVNERVGGKPARGGVYRKLTGEEMKE 356
            +TTF K+          S ++T  T Q+ S    ++ ++ G + ++G   +       + 
Sbjct: 316  TTTFLKT--------KPSHNLTSPTFQARSIPFTNIEDKRGVEFSKGRDDKVSALRSYRR 367

Query: 357  KLRKGECFRCDEKFGPNHICKNK-QFRVM-----LLRDDGEEEEIETLEPLTEEIEEAME 410
               KG CF C EK+G +H C    Q  V+      L+ D EE       P +EE      
Sbjct: 368  S--KGLCFVCGEKWGRDHKCATTVQLHVVEELINALKTDPEENCNSEGAPESEEDS---- 421

Query: 411  LKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAY 470
            L  +S  ++ G  S KS+++ G ++ T +++LVD G+TH+FI   L  ++        A 
Sbjct: 422  LMAISFQALNGTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAI 481

Query: 471  TVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFE 530
             V+V DG  +       N S   QG   T DF L  L   D +LG++WL     ++ ++ 
Sbjct: 482  KVQVADGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWV 541

Query: 531  ELTLKFKLGNKKVVLKG-EPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEET 589
               + F+   + V L+G  P+L       N  ++ + ++G    L +  +  E   A   
Sbjct: 542  HKWIAFQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNVA-ETLTATTV 600

Query: 590  PELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVA 649
            PE+++ +L++F  +F+ PTELPP+R  DH I L EGA   N+RPYRY    K+EIE+ VA
Sbjct: 601  PEIVQPILNEFQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEIERQVA 660

Query: 650  EMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIG 709
            EML +G+I+PS SP+SSP +LV+KKDG+WR C+DYR LN +TV +K+P+PVIDELLDE+ 
Sbjct: 661  EMLRSGVIQPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELA 720

Query: 710  PARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVL 769
             ++ FSK+DL++GYHQI M   D  KTAF+TH GHYE+ VM FGLT AP+TF S MNE L
Sbjct: 721  GSKWFSKLDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSAMNETL 780

Query: 770  RPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGH 829
             PVLRK ALVFFDDILIYS T+E H+ H+  VLQL+  H  K+   K  F + +I YLGH
Sbjct: 781  SPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGH 840

Query: 830  VLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD 889
            V+ A  VA DP K++ +  WP P  +K LRGFLGL GYYR+FV+ +G I++PLTQLLKK 
Sbjct: 841  VIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISKPLTQLLKKG 900

Query: 890  -SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFW 948
              F+W P  + AF+ LK  L   P LA+PDFSK F +ETDAS  G+GAVL+QE  P+A+ 
Sbjct: 901  IPFKWTPEIESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLSQEKHPIAYL 960

Query: 949  SATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQF 1008
            S  L  +++  S YE+E MA++ AV+ WR YL    FII TD  SL  LTEQ++    Q 
Sbjct: 961  SRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLHTPWQQ 1020

Query: 1009 KWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQ----DPK 1064
            K  +KL G  ++I Y+ G  N+AADA+SRR S  +           W  E++Q    D +
Sbjct: 1021 KAFTKLLGLQYKICYRKGVSNAAADALSRRESPISEVAAISECIPSWMQELMQGYQLDGQ 1080

Query: 1065 LQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFR 1124
             + ++ +L + P + K Y L    L YKGK+ +   ++    L  E HA+ LGGHSGF  
Sbjct: 1081 SKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATPLGGHSGFPV 1140

Query: 1125 TYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFI 1184
            TYR++ ++  W GMK  I++ +  C  C + K D     GLLQPLPVP   W  +S+DFI
Sbjct: 1141 TYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGAWQTISLDFI 1200

Query: 1185 GGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRD 1244
             GLP+S+  + ILVVVD+ +KY+HFIPL HPF A  VA  F+  + +LHG P  I+SDRD
Sbjct: 1201 EGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPRAIISDRD 1260

Query: 1245 SLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLP 1304
             +F S FW +LF   GT L  SSAYHPQ+DGQTE VN+CLE+YLRC   + P KW + L 
Sbjct: 1261 KIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAAPHKWSSWLY 1320

Query: 1305 WAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRAN 1364
             AEFW+N++++ +   +PF+ LYG  P     G     +IA +++    R  +   L+ +
Sbjct: 1321 LAEFWYNTSFHSTLNKTPFEVLYGYTPSHFGIGLD-DCQIADLHEWHTERKFMQQLLQQH 1379

Query: 1365 LLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAK 1424
            L ++Q  M+  A+KKR    + +GD V+LKLQPY +  +A++   KL+ RYYGP+ ++++
Sbjct: 1380 LNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQVMSR 1439

Query: 1425 IGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQ-PLPAALNEDHELLVEPESVLAVR 1483
            +G VAY ++LPA S +HPVFHVS LK AVG + + Q  LP +L      L  P   L  R
Sbjct: 1440 VGTVAYHIQLPATSSIHPVFHVSQLKAAVGFSKKVQDELPTSLG----ALQVPFQFLDKR 1495

Query: 1484 ETTMGQ---IEVLIQWHSLPACENSWESAAQLHEAFP 1517
                G    +++L  W+     E++WE    L   FP
Sbjct: 1496 LVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARFP 1532


>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
            gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
            (japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
            OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
          Length = 1629

 Score =  928 bits (2398), Expect = 0.0
 Identities = 542/1456 (37%), Positives = 815/1456 (55%), Gaps = 79/1456 (5%)

Query: 118  TERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWET 177
            + R  KLD P F G  D   W  K E YF +        V+  ++   G+A SW +  + 
Sbjct: 173  SHRVPKLDFPKFDGT-DPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKA 231

Query: 178  CNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGID--- 234
              +   W  F  A+ ++F    +      +  ++Q G+V E+  QF+     L   D   
Sbjct: 232  HVRFPNWEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLVYDPVV 291

Query: 235  EEHYMDI-FVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQ--------KNLAVSKAGIG 285
              HY+   F  GL  +I   + L  P+ L   +  AL+ E+            V K+   
Sbjct: 292  NMHYLTHRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGKEVKKSEGN 351

Query: 286  STSRYNSSFK-------PPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGG 338
            S  R  ++ +       PP RS      ++ +  ++S         V+ SSG+ NER+  
Sbjct: 352  SLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKES--------EVRRSSGT-NERLSS 402

Query: 339  KPARGGVYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNK-QFRVMLLRDDGEEEEIET 397
              A              ++  +G C+ C EK+ P H C N  Q   +        E +E 
Sbjct: 403  LKA--------------QRRAQGLCYICAEKWSPTHKCSNTVQLHAVQELFTVLHESVED 448

Query: 398  LEPLTEEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLA 457
                T+ + E   L  +SL ++QG  +   +++ G+++G  I++LVD G++ +FIS+ +A
Sbjct: 449  GLSTTDHVVE-QTLMAVSLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVA 507

Query: 458  REMELQITETPAYT-VEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGL 516
              + + + E P +  V V  G  +       N    IQG V   +  +  L   D++LG+
Sbjct: 508  SSL-MGVLEQPVHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGM 566

Query: 517  EWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRASMNA----------LVKAIQ 566
            +WL     +  ++   +L       ++ L G     ++ A +++           V  + 
Sbjct: 567  DWLMQHSPMTVDWTTKSLIIAYAGTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLV 626

Query: 567  QQGEGYVLQYQMLEKEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGA 626
            Q    + L+YQ         E+ PE+++ VL++F ++F  P  LPP R+ DH I L  GA
Sbjct: 627  QFCSVFALEYQ---------EQIPEVVQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGA 677

Query: 627  SIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRA 686
               N+RPYRY   QKNEIE  V EML+ GII+PS SP+SSPV+LV+KKDGSWRFCVDYR 
Sbjct: 678  GPVNVRPYRYTPIQKNEIESQVQEMLSKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRH 737

Query: 687  LNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYE 746
            LN ITV NK+P+PVIDELLDE+  A+ FSK+DL+SGYHQI M  +D  KTAF+TH GH+E
Sbjct: 738  LNAITVKNKYPLPVIDELLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFE 797

Query: 747  FLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMD 806
            F V+PFGLT+AP+TFQ +MN VL  +LR+C LVF DDILIYS ++EEHV HL  V Q++ 
Sbjct: 798  FRVLPFGLTSAPATFQGVMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILL 857

Query: 807  QHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTG 866
            +H LK+   K  F + ++ YLGH++    V+ DP+K++ +  WP P  +K LR FLGL+G
Sbjct: 858  KHQLKVKRTKCSFAQQELAYLGHIIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSG 917

Query: 867  YYRRFVKDYGKIARPLTQLLKKDS-FQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVL 925
            YYR+FV++YG +++PLT LL+K   + W    + AF+ALK  L     LA+PDF   FV+
Sbjct: 918  YYRKFVRNYGILSKPLTNLLRKGQLYIWTAETEDAFQALKQALITALVLAMPDFQTPFVV 977

Query: 926  ETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHF 985
            ETDAS  G+GAVL Q   PLAF S  L  R    S YE+E +A++ AV  WR YL    F
Sbjct: 978  ETDASDKGIGAVLMQNNHPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEF 1037

Query: 986  IIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSR--RSSYCA 1043
             IRTD +SL FLTEQ++    Q K ++KL G  ++I +K G DNSAADA+SR   S    
Sbjct: 1038 FIRTDHRSLAFLTEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVE 1097

Query: 1044 LSVLKVNDFEEWQTEML----QDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSK 1099
            LS L V    EW  +++     DP   + V  L ++  A   ++L++  L+++ +L +  
Sbjct: 1098 LSALSV-AVPEWINDIVAGYSSDPDACSKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGH 1156

Query: 1100 QSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDN 1159
                   +    H + +GGHSG   TY+R+  +  W  +++ +  +V  C  CQ+ K ++
Sbjct: 1157 NVDVQQRILANLHTAAVGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEH 1216

Query: 1160 LSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAP 1219
            +   G+LQPLPVP   W  VS+DF+ GLPKS   + ILVVVD+ +KY+HF+PL HPF+A 
Sbjct: 1217 VKYPGMLQPLPVPDHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSAL 1276

Query: 1220 EVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEV 1279
            +VA  ++  + RLHG P +++SDRD +F S+ W  LFR++GTQL+ SS+YHPQTDGQTE 
Sbjct: 1277 DVAEAYMQHIHRLHGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTER 1336

Query: 1280 VNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTT 1339
            VN+CLE +LRC   + P +W   L  AE+W+N++++ +   +PF+ LYG +P       +
Sbjct: 1337 VNQCLETFLRCFVHACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSAS 1396

Query: 1340 IPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYR 1399
               +   + +    R+++ + +R +LL++Q  M+  A++ R +  + +GD V+LKLQP+ 
Sbjct: 1397 AACRSDDLVEWLHEREKMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFV 1456

Query: 1400 RRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQ- 1458
            ++S+  + N KLS R+YGP+ ++ K+G VAYRL+LP+ S +HPV HVS LK A+    Q 
Sbjct: 1457 QQSVVTRANRKLSFRFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQV 1516

Query: 1459 PQPLPAALNEDHELLVEPESVLAVRETTMGQ---IEVLIQWHSLPACENSWESAAQLHEA 1515
              PLP  L+  +   V P  +L  R    G     ++ ++W        +WE+  +L   
Sbjct: 1517 HSPLP-VLDPTNATHVCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRR 1575

Query: 1516 FPDFPLEDKVKHLGGG 1531
            FP  P   +    GGG
Sbjct: 1576 FPTAPAWGQAGTQGGG 1591


>gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
            (japonica cultivar-group)]
          Length = 1513

 Score =  915 bits (2365), Expect = 0.0
 Identities = 485/1180 (41%), Positives = 708/1180 (59%), Gaps = 60/1180 (5%)

Query: 367  DEKFGPNHICK-NKQFRVMLLRDD-------------GEEEEIETLEPLTEEIEEAMELK 412
            DE + P H CK  K    +LL ++              +E+ +E  E   EEI++  EL 
Sbjct: 365  DEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQE-ELM 423

Query: 413  HLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTV 472
            ++S N++QG +   +  V  ++ G   V LVD G+   F+ Q  A   +  +  T +  V
Sbjct: 424  YVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIRNDCPLVSTDSKKV 483

Query: 473  EVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEEL 532
             V  G  +KS+    ++  QIQG   +  F L  L+G D++LG +W+     I  + ++ 
Sbjct: 484  VVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKKR 543

Query: 533  TLKFKLGNKKVVLKGEPELLKKRASMNALV-KAIQQQGEGYVLQYQML--EKEVAKAEET 589
             L    G K + L+      K     ++ V K I++ G GY+ Q   +  E +V ++   
Sbjct: 544  ELGITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKGGLGYLFQITQVAEESDVEESISI 603

Query: 590  PELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVA 649
            P+ ++ +L  FP +   P  LPPQR  DH I LK+GA  PN+RPYR PH+QK  +EK++A
Sbjct: 604  PDDIQDILQRFPTVLEKPKGLPPQRGCDHVITLKDGAIPPNLRPYRVPHHQKEAMEKIIA 663

Query: 650  EMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIG 709
            E++ +  I+ S SPYSSP ++VRKKDGSWR CVDYR LN  TV NKFP+P+I++LLDE+ 
Sbjct: 664  ELIESKEIQVSNSPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDELN 723

Query: 710  PARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVL 769
             A++F+K+DL SGYHQI M   D+ KTAFRTH GHYE+ VMPFGLTNAP+TFQSLMN+VL
Sbjct: 724  GAKIFTKLDLMSGYHQIRMSRPDIPKTAFRTHLGHYEYQVMPFGLTNAPATFQSLMNQVL 783

Query: 770  RPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGH 829
             P  RK  LVFFDDILIYS   EEH  H+  VLQ++  ++L I  KK  FG   + YLGH
Sbjct: 784  APFFRKFVLVFFDDILIYSKDREEHKEHIRLVLQVLKANNLVIKPKKCAFGLSSVSYLGH 843

Query: 830  VLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD 889
            ++S   VA DP K+E +  WP+PK++  LR FLG+TGYYRRF++ Y  I RPL  +LKK+
Sbjct: 844  IISQNGVATDPGKVEKIVSWPIPKNVTDLRKFLGMTGYYRRFIQGYVLICRPLHDMLKKE 903

Query: 890  SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWS 949
             FQWG    +AF+ LK  +   P L +PDFSK F +E DA GTG+GAVL Q  +P+AF+S
Sbjct: 904  GFQWGEKQTEAFKFLKQKMCSSPVLTLPDFSKEFTIEADACGTGIGAVLMQGDRPIAFYS 963

Query: 950  ATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFK 1009
             +L  ++ A+S+YE+E MA++ A+++WRHY LG   +I+TDQ+SLK +  Q++V   Q K
Sbjct: 964  KSLGPKAAAQSIYEKEAMAILEALKKWRHYFLGSKLVIKTDQQSLKHMMNQRLVEGIQHK 1023

Query: 1010 WISKLSGYDFEIQYKPGKDNSAADAMSR------RSSYC-ALSVLKVNDFEEWQTEMLQD 1062
             + KL  YD+ I+YK GKDN  ADA+SR      ++  C A++V+      + Q     D
Sbjct: 1024 LLLKLMEYDYIIEYKAGKDNVVADALSRLPQDQLQTEICNAITVVIPKWIIDVQNSYEGD 1083

Query: 1063 PKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGF 1122
             +   I+  +  + +  + Y+ ++  L +KG++ + +++S    L +++H S  GGHSG 
Sbjct: 1084 VQAHKILSMIGTNSDPDQHYSFENGILRFKGRIYVGEETSIRTNLIRDYHCSAFGGHSGM 1143

Query: 1123 FRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMD 1182
              T+ R+ A+ YW G+K  +  F+ EC  CQ  K +++   GLL PL V    WT ++MD
Sbjct: 1144 RATHHRIKALFYWPGLKKTVEMFIRECPVCQITKVEHIHIPGLLNPLEVLDMAWTHITMD 1203

Query: 1183 FIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSD 1242
            FI GLPKS  KD ILVVVDRLTKYAHF+ L HP++  +V  +F++ + RLHG P  I+ D
Sbjct: 1204 FIEGLPKSKWKDAILVVVDRLTKYAHFLALSHPYSVEQVVEIFMNNIHRLHGMPMAIIID 1263

Query: 1243 RDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTC 1302
            RD +F S  ++E+F+    QL+FS++YHPQTDGQTE VN+CLE YLR +T   P +W + 
Sbjct: 1264 RDRIFTSQLFQEIFKSMKVQLRFSTSYHPQTDGQTERVNQCLESYLRNMTFQEPHQWYSW 1323

Query: 1303 LPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLR 1362
            L  A +W+N+ Y+ S +M+PFQALYG  PP              +N+  +  +       
Sbjct: 1324 LSLAGWWYNTTYHTSLQMTPFQALYGYPPP-------------QINEFSISCN------- 1363

Query: 1363 ANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIV 1422
                         + + R +    +GD V++KLQPYR+ +   + + KL  ++YGP+ ++
Sbjct: 1364 ------------VSAEARTERSLNVGDMVYIKLQPYRQTAFGIRGSLKLRSKFYGPFKVL 1411

Query: 1423 AKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAV 1482
             KIG VAY+L+LP  + +HPVFHVS LK  +G    P     ++  D ++  +P +VL  
Sbjct: 1412 EKIGQVAYKLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLPSMGPDGQIKTQPVAVLQR 1471

Query: 1483 RETTMGQIEV---LIQWHSLPACENSWESAAQLHEAFPDF 1519
            R      + V   LI W +L   + +WE AA +   +P F
Sbjct: 1472 RMIPRNGVAVTQWLILWENLGPADATWEDAAVIQSMYPTF 1511


>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
          Length = 2396

 Score =  890 bits (2300), Expect = 0.0
 Identities = 527/1445 (36%), Positives = 793/1445 (54%), Gaps = 105/1445 (7%)

Query: 123  KLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVT 182
            +++ P F G+     W    E YF +        ++   +   G+A SW Q       + 
Sbjct: 174  RVNFPQFDGDNPQL-WKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCML 232

Query: 183  TWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGI----DEEHY 238
            +W++F   + +RF    + S    L  + Q G+V E+V QF      L       D  +Y
Sbjct: 233  SWSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYY 292

Query: 239  MDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPF 298
               F++GL+++I A I +  P +L      AL+ E+           +T+R     +P  
Sbjct: 293  TMRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEE----------ATTARRWRRSEPSS 342

Query: 299  RSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKL 358
                 +  VQ+    K  S    + + QS+S S                     +  E L
Sbjct: 343  SHAGPKTGVQLSASTKWTSN---KDSTQSASHS---------------------DKLESL 378

Query: 359  R-----KGECFRCDEKFGPNHICK-NKQFRVM------LLRDDGEEEEIETLEPLTEEIE 406
            R     KG C +C EK+ P H C    Q   M      L+ ++  E ++   EP  E++ 
Sbjct: 379  RRFRRAKGLCDKCAEKWNPGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPEPAPEQL- 437

Query: 407  EAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITE 466
                   +S ++  G + R++LK+ G ++   +++L+D G++H F++  L   ++   + 
Sbjct: 438  ----FVTISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSM 493

Query: 467  TPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIK 526
                 V+V +G +V           QIQ    T D     L   D+V+G++WL     ++
Sbjct: 494  ASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMR 553

Query: 527  ANFEELTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKA 586
             ++ +  L        V+L+G    +     +  L              +      V+ +
Sbjct: 554  VDWAQKWLIIPYQGSSVLLQGNTAGVPADTVIELL--------------FMESASSVSSS 599

Query: 587  EETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEK 646
             ++   ++A+L  F ++FA P  LPP R  DHAI L EGA   ++RPYRYP   K++IEK
Sbjct: 600  PDSHPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPYRYPPALKDKIEK 659

Query: 647  LVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLD 706
             V EML+ G+I+ S S ++SPV+LV+KKD +WRFCVDYR LN +T+ +K+P+PV D+L+D
Sbjct: 660  QVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPVPVFDQLID 719

Query: 707  EIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMN 766
            E+  ++ FSK+DL++GYHQI++K  +  KTAF+TH GHYEF VM FGLT AP+TF S MN
Sbjct: 720  ELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAPNTFLSAMN 779

Query: 767  EVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEY 826
            E L+PVLRKCALVFFDDILIYS + EEH++HL +VLQL+   + K+   K  F +    Y
Sbjct: 780  ETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCEFAKTNTAY 839

Query: 827  LGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLL 886
            LGH++S   V+  P K++A+  W VP   K LR FLGL G+YR+FVK +G I+RPL  LL
Sbjct: 840  LGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKHFGIISRPLFDLL 899

Query: 887  KKDS-FQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPL 945
            KK + F W     +AFE LK  L   P LA+PDFS+ F + TDAS  G+GAVL Q G PL
Sbjct: 900  KKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAVLMQSGHPL 959

Query: 946  AFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGE 1005
            AF S  L  ++Q  S YE+E MA++ A+ +WR YL    FII TD +SL  L EQ++   
Sbjct: 960  AFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQLNEQRLHTI 1019

Query: 1006 GQFKWISKLSGYDFEIQYKPGKDNSAADAMSRR----SSYCALSVLKVNDFEEWQTEMLQ 1061
             Q K  +KL+G  ++I Y+ G DN AADA+SR+    S  CA+S    +    W  E+++
Sbjct: 1020 WQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSHCCAIS----HSVPTWLQEVVE 1075

Query: 1062 ----DPKLQAIVHDLIVDP------EAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEF 1111
                DP  + ++  LI++         H+G     +R++  G L L ++      + +  
Sbjct: 1076 GYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQK------VLQAM 1129

Query: 1112 HASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPV 1171
            H + +GGHSG   TY ++  + YW GM++D+  +V  C  CQ++K D     GLLQPL V
Sbjct: 1130 HDTAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEV 1189

Query: 1172 PTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVR 1231
            P Q W  +S+DFI GLP+S   + ILVVVD+ +KY HF+PL HPFTA +VA +FL  V +
Sbjct: 1190 PPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYK 1249

Query: 1232 LHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCL 1291
            LHG P  I+SDRD +F SSFW++LF+++GT L  SS+YHPQ+DGQTE +N+CLE +LRC 
Sbjct: 1250 LHGLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCY 1309

Query: 1292 TGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPP--VLLQGTTIPSKIAAVND 1349
              + P +W   L  AE+W+N+  + +   +PF+ LYG  P    +L  T +P     +  
Sbjct: 1310 VHTCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQ--PELET 1367

Query: 1350 LQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNE 1409
                R+ +   ++ +L ++QD M+  A+K+R +  + +GD V+LKLQPY + S+A + N 
Sbjct: 1368 WLKERELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNH 1427

Query: 1410 KLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNED 1469
            KLS +++GP+ I  ++G+VAYRL LPA S +HP+FHVS LK  +G + +  P    L +D
Sbjct: 1428 KLSFKFFGPFQITDRLGSVAYRLALPASSSIHPIFHVSQLKRVIGRDQRASP---QLPQD 1484

Query: 1470 HELLVEPESVLAVRETTMGQ---IEVLIQWHSLPACENSWESAAQLHEAFPDFPLEDKVK 1526
               +  P  +L  R    G     +V + W  +     +WE    L   FP   + D+  
Sbjct: 1485 VGPIQVPTRILQRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPKALIWDQAG 1544

Query: 1527 HLGGG 1531
              G G
Sbjct: 1545 ARGQG 1549


>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
            gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
            gi|18958673|gb|AAL82656.1| retrotransposon protein,
            putative, unclassified [Oryza sativa (japonica
            cultivar-group)]
          Length = 1338

 Score =  845 bits (2182), Expect = 0.0
 Identities = 472/1153 (40%), Positives = 665/1153 (56%), Gaps = 65/1153 (5%)

Query: 382  RVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVV 441
            R   L +D +  E +T      +  +A     +SL++  G+ +  ++ +   L  T +  
Sbjct: 216  RTGYLSEDQQLGEDDTDNDSATDQADAAATLRISLHAATGVRASDAMHITAHLGDTDLYT 275

Query: 442  LVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQD 501
            L+D G  H F+SQ  A  +           V V +G  V   GV  ++ +QI G     D
Sbjct: 276  LIDSGLMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAGEEFATD 335

Query: 502  FFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRASMNAL 561
             +                        +F  LT+ F     +V L G P   + RA   A 
Sbjct: 336  VY------------------------DFTVLTMSFW---HRVTLHGLPGHQRPRALACA- 367

Query: 562  VKAIQQQGEGYVLQYQMLEKEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIH 621
                                          LL ++L +F  +F  PT LPP R   H I 
Sbjct: 368  ---------------------------PAALLDSLLEEFADVFTEPTGLPPARDRSHRIQ 400

Query: 622  LKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFC 681
            L  G +   +RPYRYP   K+E+E+    M   G+I  S S +SSPV+LV+K DGSWRFC
Sbjct: 401  LLPGTAPVAVRPYRYPVRHKDELERQCRVMEENGLIHRSTSAFSSPVLLVKKADGSWRFC 460

Query: 682  VDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTH 741
            V+YRALN+ TV +K+PIPV+DELLDE+  A +FSK+DL+SGYHQ+ M  +D++KTAFRTH
Sbjct: 461  VNYRALNERTVKDKYPIPVVDELLDELHGAAIFSKLDLRSGYHQVRMHPDDIDKTAFRTH 520

Query: 742  EGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQV 801
            +G YEFLV+PFGLTNA +TFQSLMN+VLRP LR+  LVFFDDIL+YS T   H+ HL  V
Sbjct: 521  DGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRRFVLVFFDDILVYSPTWTSHLQHLRTV 580

Query: 802  LQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGF 861
               +    L +   K  FG   + YLGH++S    A D  K++A+  WP P+  K LRGF
Sbjct: 581  FTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHGFAMDAAKIQAVAEWPRPRSPKELRGF 640

Query: 862  LGLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSK 921
            LGL  YYR+F++D+G +A PLTQLL+KDSF W P+   AF+ LK  LT  P L++PDF++
Sbjct: 641  LGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAPATDDAFQRLKLALTTTPVLSLPDFNR 700

Query: 922  VFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLL 981
             FV+E DASGTG GAVL Q   P+A++S  ++ R  A + YEREL+++V+AV+ WR YL 
Sbjct: 701  PFVVECDASGTGFGAVLHQGEDPIAYFSRPIATRHHALAAYERELISLVQAVRHWRPYLW 760

Query: 982  GRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRR--- 1038
            GR FI++TD  SLKFL +Q++    Q  W+SKL G+DF ++YKPGK N+AADA+S R   
Sbjct: 761  GRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLLGFDFVVEYKPGKQNAAADALSCRAAP 820

Query: 1039 -SSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVL 1097
             S    LS    +  ++ +T    DP LQA+  D I        + + D  + YK ++ +
Sbjct: 821  DSQAFVLSTPTFDLLKDIRTAGDTDPALQAL-RDEINSGTRTTPWAVIDGLVTYKRRIYI 879

Query: 1098 SKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKF 1157
               S  + ++    H     GH G  +T  RL    +    +  + D +  C TCQRNK 
Sbjct: 880  PPGSPWVSVVVAAAHDD---GHEGIQKTLHRLRRDFHTPDDRRVVHDHIQGCLTCQRNKT 936

Query: 1158 DNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFT 1217
            D+L PAGLL PLPVP+ +W+DV+MDF+ GLP+  GK  IL VVDR +KYAH I L H +T
Sbjct: 937  DHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGGKSVILTVVDRFSKYAHLIALAHSYT 996

Query: 1218 APEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQT 1277
            A  VA  F  ++VRLHG P +IVSDRD +F S+FW  LF  + T+L  S+A+HPQ+DGQ+
Sbjct: 997  AETVARAFFVDIVRLHGVPESIVSDRDPVFTSAFWTALFTATCTKLHRSTAFHPQSDGQS 1056

Query: 1278 EVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQG 1337
            + VN+ + + LRC+TG R R+W+  LPWAE+ +N++++ + + +PF+ +YGR+PP +   
Sbjct: 1057 KAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNTSFHAALRDTPFKLVYGRDPPSIRAY 1116

Query: 1338 TTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQP 1397
                 ++AAV      RD  L+D+R  L ++Q   + Y ++K R+V +++G  V+L+++ 
Sbjct: 1117 DASELRVAAVAQSIEERDAFLADVRLRLEQAQQYAKRYYDQKHREVSFEVGAWVWLRVRH 1176

Query: 1398 YRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNF 1457
                SL + +  KL PR+YGPY +VA I  VAYRL LP  +R+H VFHV LLK  VG + 
Sbjct: 1177 RVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRLALPPGTRLHDVFHVGLLKPFVGVS- 1235

Query: 1458 QPQPLPAALNEDHELLVEPESVLAVRETTMGQIEVLIQWHSLPACENSWESAAQLHEAFP 1517
               PL     +       P  VL  R    G  ++L+QW  LPA   SWE        +P
Sbjct: 1236 PSAPLALPPIQHGAAQPVPRQVLRAR-LARGVRQLLVQWEGLPASATSWEDLDDFRNRYP 1294

Query: 1518 DFPLEDKVKHLGG 1530
             F L D++   GG
Sbjct: 1295 SFQLADELLIEGG 1307



 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 95  GQPGSVRDEADARENLQRTANAQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEE 154
           G+PG  R + D           +  R+ KLD P F G  D   ++ + E++FR +   E+
Sbjct: 91  GRPGGHRFDGDGD---------RPPRYHKLDFPKFDGRGDPLPFLNRCEQFFRGQRTPED 141

Query: 155 EKVQAIMVALDGKALSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEG 214
            KV      L   A  WY   E  ++  +W +F E +  R+    +S+P   L A ++  
Sbjct: 142 NKVWLASYHLLDGAQQWYTRLERDHEPPSWHRFSELLNMRYGPPLHSTPLGELAACRRTT 201

Query: 215 SVEEFVGQFERFAGML 230
           +V+++    ERF  +L
Sbjct: 202 TVDDYA---ERFLDLL 214


>gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 933

 Score =  811 bits (2095), Expect = 0.0
 Identities = 427/879 (48%), Positives = 572/879 (64%), Gaps = 19/879 (2%)

Query: 651  MLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGP 710
            ML  GII+ S SP+SSP +LV+KKDGSWR C+DYR LN IT    +P+P+IDELLDE+  
Sbjct: 1    MLQNGIIQHSSSPFSSPALLVKKKDGSWRVCIDYRQLNAITKKGTYPMPIIDELLDELAG 60

Query: 711  ARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLR 770
            A++FSK+DL++GYHQI M   +  KTAF+TH GHYE+ VM FGLT AP+TFQ  MN+ LR
Sbjct: 61   AKIFSKLDLRAGYHQIRMAEGEEFKTAFQTHSGHYEYKVMSFGLTGAPATFQGAMNDTLR 120

Query: 771  PVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHV 830
            P+LRKCALVFFDDILIYS  M  H+ HL QVLQL+D H  K+   K  F + QI YLGH+
Sbjct: 121  PLLRKCALVFFDDILIYSPDMNSHLDHLKQVLQLLDTHQWKVKLSKCDFAQTQISYLGHI 180

Query: 831  LSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDS 890
            +S   V+ DP K++++  W VP  LK LRGFLGL GYYR+FVKD+G +++PLTQLLKKD+
Sbjct: 181  ISGQGVSTDPSKIQSIVDWAVPTTLKKLRGFLGLAGYYRKFVKDFGTLSKPLTQLLKKDA 240

Query: 891  -FQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWS 949
             F W     QAF+ALKH LT  P LA+P+F + F +ETDAS  G+GAVL+Q   P+AF S
Sbjct: 241  PFVWSAEVNQAFQALKHALTSTPVLALPNFQQGFTIETDASDIGIGAVLSQNQHPVAFVS 300

Query: 950  ATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFK 1009
              L  R+Q  S YE+E +A++ AV  WR YL  + F+I TD  SL  LTEQ++    Q K
Sbjct: 301  KALGPRTQGLSTYEKECLAIMMAVDHWRPYLQFQEFLIITDHHSLMHLTEQRLHTPWQQK 360

Query: 1010 WISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEE-WQTEML----QDPK 1064
              +KLSG  F+I Y+ GK N+AADA+SR         L ++     W  ++L    QDP 
Sbjct: 361  AFTKLSGLQFQIVYRKGKHNAAADALSRHVPEETSEFLGISTCSPVWLQDILHGYDQDPL 420

Query: 1065 LQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFR 1124
              +++  L V+P ++  Y+L    + +KGK+ +   S+    +    H S LGGHSGF  
Sbjct: 421  ALSLLTGLAVNPSSYPHYSLSKGLIKHKGKVWVGNNSNIQQQIISALHDSPLGGHSGFPV 480

Query: 1125 TYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFI 1184
            TY+R+ ++  W  MK  ++  +A C  C + K D     GLLQPLPVP   W  +SMDFI
Sbjct: 481  TYKRIKSLFSWPHMKLTVQKQLASCAVCLQAKPDRSKYPGLLQPLPVPDGAWQIISMDFI 540

Query: 1185 GGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRD 1244
             GLPKS  +D ILVVVD+ +KYAHF+PL HPF+A +VA +F+  V +LHG P  I+SDRD
Sbjct: 541  EGLPKSYHQDCILVVVDKFSKYAHFMPLSHPFSALDVAKVFMLNVYKLHGLPQIIISDRD 600

Query: 1245 SLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLP 1304
             +F S+ W++LF  SGT+L  SSAYHPQ+DGQTE VN+CLE++LRC   + P KW   L 
Sbjct: 601  KIFTSALWEQLFLRSGTKLHLSSAYHPQSDGQTERVNQCLEIFLRCFVHATPAKWSLWLH 660

Query: 1305 WAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDE---LLSDL 1361
             AEFW+NS+Y+ +   +PF+ LYG  P        I +    ++DL     E   +   L
Sbjct: 661  LAEFWYNSSYHSALNKTPFEVLYGYPP----SHFGIRADACVISDLDSWLSERHLMTQLL 716

Query: 1362 RANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPI 1421
            R +L ++Q +M+  A+KKR    +Q+GD VFLKLQPY + S+AK+ N KLS RY+GPY I
Sbjct: 717  RQHLNRAQQVMKTQADKKRSFRSFQVGDWVFLKLQPYVQSSVAKRANHKLSFRYFGPYQI 776

Query: 1422 VAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLA 1481
            ++K+G+VAY+L+LPA S VHPVFHVS LK   GT      + + L    + +  P  +L 
Sbjct: 777  LSKVGSVAYKLQLPADSMVHPVFHVSQLK---GTQNFKHSIQSQLPNITDHIQYPVQILD 833

Query: 1482 VRETTMGQ---IEVLIQWHSLPACENSWESAAQLHEAFP 1517
             R    G     ++L+ W +LPA E +WE   +L + FP
Sbjct: 834  TRIQKKGNKVVRQILVCWSNLPAVEATWEDEEELKQRFP 872


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,618,826,812
Number of Sequences: 2540612
Number of extensions: 114793142
Number of successful extensions: 508240
Number of sequences better than 10.0: 38038
Number of HSP's better than 10.0 without gapping: 3153
Number of HSP's successfully gapped in prelim test: 35008
Number of HSP's that attempted gapping in prelim test: 403350
Number of HSP's gapped (non-prelim): 51227
length of query: 1553
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1412
effective length of database: 505,134,102
effective search space: 713249352024
effective search space used: 713249352024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)