BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.6
(1449 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 350 3e-94
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 341 1e-91
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 339 5e-91
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 328 6e-88
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 328 6e-88
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 325 7e-87
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 324 1e-86
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 314 1e-83
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 312 5e-83
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 312 5e-83
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 306 3e-81
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 304 1e-80
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 300 2e-79
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 298 9e-79
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 294 1e-77
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g... 294 1e-77
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 294 2e-77
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 292 5e-77
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 286 3e-75
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 286 3e-75
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 350 bits (897), Expect = 3e-94
Identities = 177/468 (37%), Positives = 269/468 (56%), Gaps = 18/468 (3%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L+ T G LHGI++ Q AP +SHLLFADD+++ RA EA + IL YE+ SGQV
Sbjct: 855 LLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQV 914
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVW 987
IN DKS + S N + L ++ + +KYLGLP +G+S+++IF+++K+R+W
Sbjct: 915 INKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIW 974
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASR 1047
++++GWKEK LSRAG+E+LIK+VAQ IP++ M CF L LC ++ MIAK++W+
Sbjct: 975 QRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKD 1034
Query: 1048 RGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRT 1107
+HW+ W+ L K+ GGLGFRD FNL+++ K WR+ PD+L +++ +A YFP
Sbjct: 1035 NKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLG 1094
Query: 1108 DLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLV 1167
D + K+ SY W SI + + G WR+GDG K+ +W D W+P G + +
Sbjct: 1095 DCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRG----WSRKPM 1150
Query: 1168 AEWGIHLVSDL--IVQPH-GGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVN 1224
G +LV+ + ++ P+ G W+ LL F V I ++PV + +D L W +
Sbjct: 1151 TPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHV-EMEDVLAWHFDAR 1209
Query: 1225 GMYSSKSGYQLLQSLTQE-------GVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRA 1277
G ++ KS Y++ + + + GVS+ SG + WKK W+ + K WR
Sbjct: 1210 GCFTVKSAYKVQREMERRASRNGCPGVSNWESGDD---DFWKKLWKLGVPGKIKHFLWRM 1266
Query: 1278 IKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFA 1325
L +R +L RGMDVD RC +CG E H+F C V+ +W A
Sbjct: 1267 CHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQA 1314
Score = 119 bits (299), Expect = 6e-25
Identities = 79/226 (34%), Positives = 113/226 (49%), Gaps = 9/226 (3%)
Query: 493 VYGFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMA 552
+YG + K RTW ++ L PWL GDFN+IL +K G + M E
Sbjct: 396 LYGDAHSETKHRTWTTMRGLI-DNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRH 454
Query: 553 TCSTCDLHDVGVSGYRFTWSN-KRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRS 611
+ C L D+G G FTW N + G + E LD A+AN W A++P V + S
Sbjct: 455 ALTDCGLDDLGFEGDAFTWRNHSHSQEGYIREWLDRAVANPEWRAMFPAARVINGDPRHS 514
Query: 612 DHNPLLICCG--SRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAM-GLT--AK 666
DH P++I ++G+R FRFE WL+EE+ KE+V EAW + + GL A
Sbjct: 515 DHRPVIIELEGKNKGVRGRNGHND-FRFEAAWLEEEKFKEVVKEAWDVSAGLQGLLVHAS 573
Query: 667 LSSLGSSLKDWGREKFGDIPKKISDTKALLQKLQWQTQS-EQVVRE 711
L+ + + L W GD+ K++ K L+ + Q S +QVVRE
Sbjct: 574 LAGVAAGLSSWSSNVLGDLEKRLKKVKKELETCRRQPISRDQVVRE 619
Score = 63.9 bits (154), Expect = 4e-08
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 800 QDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGD 859
Q+ ++V +V+ A E L FT+ +V+EAL + KAPG DG PA FY+ WD++G+
Sbjct: 632 QNLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGE 691
Query: 860 DVAHFCLQVLNGTASPGSLHGIKVAQKAPVISHLL--FADDNILFARATINEAACISD-I 916
V L+VL G A P + + V+++ L D I A++ ISD I
Sbjct: 692 KVTVEVLEVLRGGAIPEGWNDTTIVLIPKVLANRLKKILPDVISPAQSAFVPGRLISDNI 751
Query: 917 LSTYE-------KASGQV 927
L YE K SGQV
Sbjct: 752 LIAYEMTHYMRNKRSGQV 769
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 341 bits (874), Expect = 1e-91
Identities = 186/509 (36%), Positives = 282/509 (54%), Gaps = 26/509 (5%)
Query: 880 GIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSR 939
GIKVA +P +SHLLFADD++ F +A + I +IL YE SGQ IN KS +
Sbjct: 450 GIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGH 509
Query: 940 NVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLS 999
V D+ ++K +LG+ + YLGLP +G SK+++F+FV+DR+ ++ GW KFLS
Sbjct: 510 KVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLS 569
Query: 1000 RAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLC 1059
+ G+EV+IKSVA +P YVMSCF LP ++ ++L +AKF+W+ + RG+HW+ W LC
Sbjct: 570 KGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLC 629
Query: 1060 RHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPS 1119
K DGGLGFR+ FN +L+ K WR+ + PD+L A++FK YF +++ D+ K Y PS
Sbjct: 630 SSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPS 689
Query: 1120 YAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWGIHL----- 1174
Y W S++ ++ + KG R+G G + VW D W+P P A++G +
Sbjct: 690 YGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFP------RPAKYGGSIVDPSL 743
Query: 1175 -VSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGY 1233
V LI WN+ LL+ +F P V I A+P+ +D L W +T G Y+ KSGY
Sbjct: 744 KVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGY 803
Query: 1234 QLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGM 1293
+ EG ++ G +L +L W+ + P+ + W+ + G +PV +LR RG+
Sbjct: 804 HTARLDLNEG--TTLIGPDL-TTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGI 860
Query: 1294 DVDDRCPLCGCEEETNDHVFVCCPAVQPLWFAS--PLAIRV----ASFSSLHELAVAFLS 1347
D C CG EE+ +H C + +W S P A + + F++L L S
Sbjct: 861 LCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPS 920
Query: 1348 TAEEDFIPVFQAW-LYTLWEARNALIFNN 1375
+ P W ++ +W+ARN +F N
Sbjct: 921 GVDSAPYP----WIIWYIWKARNEKVFEN 945
Score = 133 bits (334), Expect = 5e-29
Identities = 77/254 (30%), Positives = 127/254 (49%), Gaps = 9/254 (3%)
Query: 611 SDHNPLLICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAMG---LTAKL 667
SDH+P++ + R + FRF++ W+ ++ E +++ W S KL
Sbjct: 4 SDHSPVIATIADKIPRGKQN----FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKL 59
Query: 668 SSLGSSLKDWGREKFGDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQE 727
++ ++ W + + I D KA L Q ++ E E + L +E
Sbjct: 60 TNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQ--RDDDRSREEITELTLRLKEAYRDEE 117
Query: 728 IWWSQRSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYF 787
+W Q+SR+ W++ GD N+ FFH QRR RN I + D+ G ++D +I + YF
Sbjct: 118 QYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYF 177
Query: 788 TSLFTSSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPA 847
+LFT+++P +A V +T ++L+ T+ +V ALF +HP KAPG DG A
Sbjct: 178 QNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTA 237
Query: 848 LFYQRHWDIIGDDV 861
LF+Q+ W II D+
Sbjct: 238 LFFQKSWAIIKSDL 251
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 339 bits (869), Expect = 5e-91
Identities = 185/516 (35%), Positives = 285/516 (54%), Gaps = 10/516 (1%)
Query: 878 LHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSV 937
LHG K ++ P ISHLLFA D+++F +AT+ E + ++L YEKASGQ +N KS +
Sbjct: 119 LHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILF 178
Query: 938 SRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKF 997
+ + + +L QLLG+ E F +YLGLP +G++K+ F+F+ + +K+ W K
Sbjct: 179 GKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKL 238
Query: 998 LSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWST 1057
LS AG+EVLIKS+ AIP+Y MSCF+LP L ++ + F+W+ + I WV WS
Sbjct: 239 LSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSK 298
Query: 1058 LCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYR 1117
L K GGL RD K FN++L+ K WRI QP +L+A++FKA YFP+ L DAK +
Sbjct: 299 LNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQ 358
Query: 1118 PSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWGIHLVSD 1177
SYAW SIL + +G ++ G+G +Q+W+DNWLP P + + VSD
Sbjct: 359 SSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSD 418
Query: 1178 LIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQ 1237
L+++ G WN LL + + I A+ + +D + W +T +G YS KSGY LL+
Sbjct: 419 LLIE--GRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLR 476
Query: 1238 SLTQEGVSSSSSGGNLH-PSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVD 1296
L+Q+ +S S + +++ W+ A P+ K WR+ LP +L+ R + D
Sbjct: 477 KLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITD 536
Query: 1297 DRCPLCGCEEETNDHVFVCCPAVQPLWFASPL------AIRVASFSSLHELAVAFLSTAE 1350
D C CG E +H+ C + +W + + ++ SF+ E +A
Sbjct: 537 DTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSAR 596
Query: 1351 EDFIPVFQAWLYTLWEARNALIFNNKPVSMESLLQR 1386
+D + +F + +W+ RN LIFNNK S+ +Q+
Sbjct: 597 KD-VSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQK 631
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 328 bits (842), Expect = 6e-88
Identities = 184/520 (35%), Positives = 279/520 (53%), Gaps = 13/520 (2%)
Query: 866 LQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASG 925
+ +LN G + GI+ K ++HLLFADD +L +AT E + LS Y + SG
Sbjct: 630 IHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSG 689
Query: 926 QVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDR 985
Q+INL+KS ++ +NV + +K G+ KYLGLP + SK +F F+K++
Sbjct: 690 QMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEK 749
Query: 986 VWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDA 1045
+ +L GW K LS+ G+EVL+KS+A A+P YVMSCF LP +LC +L ++ F+W
Sbjct: 750 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809
Query: 1046 SRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFP 1105
+R IHW+ W L K GG GF+D + FN +L+ K WR+ + +L +++F++ YF
Sbjct: 810 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869
Query: 1106 RTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGA---PLLF 1162
+D A +G RPSYAW SIL + + +G R IG+G+K VW D WL G+ PL
Sbjct: 870 NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNR 929
Query: 1163 REDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWT 1222
R + + VS LI WN+ +L +F V+ IL PLF +D W +
Sbjct: 930 RRFINVDL---KVSQLIDPTSRNWNLNMLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHS 985
Query: 1223 VNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGIL 1282
NG+YS K+GY+ L + + SL+ K W P+ + W+A+ G +
Sbjct: 986 HNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAI 1045
Query: 1283 PVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFS-SLHEL 1341
PV LR RG+ DD C +C E ET +H+ CP + +W + L+ + FS S++
Sbjct: 1046 PVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTN 1105
Query: 1342 AVAFLSTAEEDFIP----VFQAW-LYTLWEARNALIFNNK 1376
+ +++ +P W L+ LW+ RNAL+F K
Sbjct: 1106 MSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGK 1145
Score = 189 bits (479), Expect = 8e-46
Identities = 134/459 (29%), Positives = 221/459 (47%), Gaps = 37/459 (8%)
Query: 412 PDVVFAMETKMYTSEVLKNRGMGGLPNVFPVQCAGSGRSRAGGLFLMWSSEVEVDILSAS 471
PD++F METK V K G + V+ G R+GGL + W S +E++ L A
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEG----RSGGLAIFWKSHLEIEFLYAD 62
Query: 472 LNHIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDIL 531
N L + + VYG P + + W+ + S+ + R W GDFNDI
Sbjct: 63 KN--LMDLQVSSRNKVWFISCVYGLPVTHMRPKLWEHLNSIGLK-RAEAWCLIGDFNDIR 119
Query: 532 SPTDKLGG---DPPNYAHMQEVMATCSTCDLHDVGVSGYRFTWSNKRAVPGTVEERLDYA 588
S +KLGG P ++ + ++ CS +H++G +G FTW R V+ +LD
Sbjct: 120 SNDEKLGGPRRSPSSFQCFEHMLLNCS---MHELGSTGNSFTWGGNRN-DQWVQCKLDRC 175
Query: 589 LANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGMRKELQRTSMFRFEELWLQEEECK 648
N AW +++P L ++ SDH P+L+ + EL R FR+++ + C
Sbjct: 176 FGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDN---ELFR-GQFRYDKRLDDDPYCI 231
Query: 649 ELVTEAWGEGSAMGLTAKLSSL---GSSLKDWGREKFGDIPKKISDTKAL--LQKLQWQT 703
E++ +W + G + SL ++ W K SDT A +++L+
Sbjct: 232 EVIHRSWNSAMSQGTHSSFFSLIECRRAISVW---------KHSSDTNAQSRIKRLRKDL 282
Query: 704 QSEQVVRET--KEAEIALDTLLM---QQEIWWSQRSRANWLRFGDKNTNFFHQKATQRRK 758
+E+ ++ E D L + +E++W Q+SR WL GDKNT FFH R
Sbjct: 283 DAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERL 342
Query: 759 RNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDAANLVANRVTAAHLEVL 818
+N + + D+ +EF + + G++ +F +LFTS+ + + +VT+ L
Sbjct: 343 KNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNL 402
Query: 819 SEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDII 857
+ T+L+V A+F ++ APG DGF ALF+Q+HWD++
Sbjct: 403 IQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLV 441
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 328 bits (842), Expect = 6e-88
Identities = 184/520 (35%), Positives = 279/520 (53%), Gaps = 13/520 (2%)
Query: 866 LQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASG 925
+ +LN G + GI+ K ++HLLFADD +L +AT E + LS Y + SG
Sbjct: 651 IHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSG 710
Query: 926 QVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDR 985
Q+INL+KS ++ +NV + +K G+ KYLGLP + SK +F F+K++
Sbjct: 711 QMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEK 770
Query: 986 VWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDA 1045
+ +L GW K LS+ G+EVL+KS+A A+P YVMSCF LP +LC +L ++ F+W
Sbjct: 771 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 830
Query: 1046 SRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFP 1105
+R IHW+ W L K GG GF+D + FN +L+ K WR+ + +L +++F++ YF
Sbjct: 831 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 890
Query: 1106 RTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGA---PLLF 1162
+D A +G RPSYAW SIL + + +G R IG+G+K VW D WL G+ PL
Sbjct: 891 NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNR 950
Query: 1163 REDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWT 1222
R + + VS LI WN+ +L +F V+ IL PLF +D W +
Sbjct: 951 RRFINVDL---KVSQLIDPTSRNWNLNMLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHS 1006
Query: 1223 VNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGIL 1282
NG+YS K+GY+ L + + SL+ K W P+ + W+A+ G +
Sbjct: 1007 HNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAI 1066
Query: 1283 PVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFS-SLHEL 1341
PV LR RG+ DD C +C E ET +H+ CP + +W + L+ + FS S++
Sbjct: 1067 PVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTN 1126
Query: 1342 AVAFLSTAEEDFIP----VFQAW-LYTLWEARNALIFNNK 1376
+ +++ +P W L+ LW+ RNAL+F K
Sbjct: 1127 MSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGK 1166
Score = 207 bits (528), Expect = 2e-51
Identities = 143/485 (29%), Positives = 235/485 (47%), Gaps = 37/485 (7%)
Query: 386 LLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPNVFPVQCA 445
++ WNC+GL NP + LK + PD++F METK V K G + V+
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 446 GSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRT 505
G R+GGL + W S +E++ L A N L + + VYG P + +
Sbjct: 62 G----RSGGLAIFWKSHLEIEFLYADKN--LMDLQVSSRNKVWFISCVYGLPVTHMRPKL 115
Query: 506 WQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGG---DPPNYAHMQEVMATCSTCDLHDV 562
W+ + S+ + R W GDFNDI S +KLGG P ++ + ++ CS +H++
Sbjct: 116 WEHLNSIGLK-RAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCS---MHEL 171
Query: 563 GVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGS 622
G +G FTW R V+ +LD N AW +++P L ++ SDH P+L+ +
Sbjct: 172 GSTGNSFTWGGNRN-DQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTN 230
Query: 623 RGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAMGLTAKLSSL---GSSLKDWGR 679
EL R FR+++ + C E++ +W + G + SL ++ W
Sbjct: 231 DN---ELFR-GQFRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVW-- 284
Query: 680 EKFGDIPKKISDTKAL--LQKLQWQTQSEQVVRET--KEAEIALDTLLM---QQEIWWSQ 732
K SDT A +++L+ +E+ ++ E D L + +E++W Q
Sbjct: 285 -------KHSSDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQ 337
Query: 733 RSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFT 792
+SR WL GDKNT FFH R +N + + D+ +EF + + G++ +F +LFT
Sbjct: 338 KSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFT 397
Query: 793 SSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQR 852
S+ + + +VT+ L + T+L+V A+F ++ APG DGF ALF+Q+
Sbjct: 398 STYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQ 457
Query: 853 HWDII 857
HWD++
Sbjct: 458 HWDLV 462
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 325 bits (833), Expect = 7e-87
Identities = 188/569 (33%), Positives = 284/569 (49%), Gaps = 23/569 (4%)
Query: 876 GSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSML 935
G L GIK + P ISHLLFADD+I FA+A + + L +Y ASGQ INL KS +
Sbjct: 677 GELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSI 736
Query: 936 SVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKE 995
+ D +K L V D YLG+PT IG + + F F+ +R+WK++ GW +
Sbjct: 737 FFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTD 796
Query: 996 KFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKW 1055
+ LSRAG E ++K+VAQAIP+YVMSCF +P S+C ++ IA +W + ++ +HW W
Sbjct: 797 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 856
Query: 1056 STLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKG 1115
S L K GG+GFR+F FN +++G+ WR+ + PD+L +++ K YFP + W+A +
Sbjct: 857 SWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQP 916
Query: 1116 YRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWGIH-- 1173
PS+ W S+L + + KG RW +GDGK ++++ DNW+PG FR LV
Sbjct: 917 KSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPG-----FRPQLVTTLSPFPT 971
Query: 1174 --LVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKS 1231
VS L+ + W+ L+ +F + IL +P+ D WP G+YS +S
Sbjct: 972 DATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRS 1031
Query: 1232 GYQLLQSLTQEGVSSSSSGGNLHPSL-----WKKFWRSEALPRCKELAWRAIKGILPVRV 1286
Y L +S S+S G L WK W+ A + K WRA L
Sbjct: 1032 AYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGF 1091
Query: 1287 SLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLW--FASPLAIRVA--SFSSLHELA 1342
LR R + D C C ++T +HVF+ CP +W A+++ FS++ +
Sbjct: 1092 QLRRRHIPSTDGCVFCN-RDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWI 1150
Query: 1343 VAFLSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMESLLQRLSTLLEMPTLVYAPVG 1402
FL + + +WEARN NN V + ++ ++ + ++M
Sbjct: 1151 FDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTV 1210
Query: 1403 RAQR----DMASSWSRPQRGTTKVNVDAS 1427
QR W P +N DA+
Sbjct: 1211 DGQRGGNTQAIPRWQPPPASVWMINSDAA 1239
Score = 272 bits (696), Expect = 5e-71
Identities = 174/503 (34%), Positives = 258/503 (50%), Gaps = 16/503 (3%)
Query: 385 RLLMW--NCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPNVFPV 442
+L+ W NCRGLG+ V L+ L+ S P +VF ETKM + G F V
Sbjct: 5 KLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAV 64
Query: 443 QCAGSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGFPEEQNK 502
C G +GGL L W++ V + + +H LV + P + VYG P+ + +
Sbjct: 65 SCEGL----SGGLALFWTTAYTVSLRGFN-SHFIDVLVSTEELPPWRISFVYGEPKRELR 119
Query: 503 VRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDV 562
W L++ L Q R PWLC GDFN++L + LG + HMQ + C L D+
Sbjct: 120 HFFWNLLRRLHDQWRG-PWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDL 178
Query: 563 GVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGS 622
G G +FTWSNK+ + RLD A+AN + + V ++ SDH + I
Sbjct: 179 GFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSR 238
Query: 623 RGM-RKELQRTSMFRFEELWLQEEECKELVTEAWGEGSA-----MGLTAKLSSLGSSLKD 676
R ++ + FRFE WL+ E+ +E+V +W SA G+ + L + SLKD
Sbjct: 239 RNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKD 298
Query: 677 WGREKFGDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRA 736
W + FG + +KI + L+ L+ ++ V++E K E L L ++EI QRSR
Sbjct: 299 WSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRV 358
Query: 737 NWLRFGDKNTNFFHQKATQRRKRNMI-EKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSS 795
+WLR GD+NT FFH +A+ RR+ N I E +RDDG R + I R+ ++ +LF+S
Sbjct: 359 DWLREGDRNTAFFHARASARRRTNRIKELVRDDGSR-CISQEGIKRMAEVFYENLFSSEP 417
Query: 796 PSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWD 855
M++ + + N+V L + +T +++ ALFQM TKAPG DGFPALFYQ HW
Sbjct: 418 CDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWG 477
Query: 856 IIGDDVAHFCLQVLNGTASPGSL 878
I+ + + + L G P L
Sbjct: 478 ILEEHICNAVRGFLLGEEIPEGL 500
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 324 bits (831), Expect = 1e-86
Identities = 185/603 (30%), Positives = 313/603 (51%), Gaps = 23/603 (3%)
Query: 866 LQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASG 925
+++L + G+KVA+ AP ISHLLFADD++ + + I I+ Y ASG
Sbjct: 652 VKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASG 711
Query: 926 QVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDR 985
Q +N KS + +++ + +K+ LG++ YLGLP SK +++KDR
Sbjct: 712 QRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDR 771
Query: 986 VWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDA 1045
+ KK+ GW+ FLS G+E+L+K+VA A+P+Y MSCF +P ++C +++ ++A+F+W
Sbjct: 772 LGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKK 831
Query: 1046 SRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFP 1105
RG+HW W L R K GGLGF++ +AFN++L+GK WR+ ++ D+L+A++FK+ YF
Sbjct: 832 EGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFS 891
Query: 1106 RTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPG----GAPLL 1161
++D +A G RPS+AW SI ++++ +G R IG+G+ + VW D W+ A +
Sbjct: 892 KSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAV 951
Query: 1162 FREDLVAEW---GIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLF 1218
R LV+++ IH+V DL++ WN L+ ++F T + ILA+ D
Sbjct: 952 KRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFT 1011
Query: 1219 WPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSL---WKKFWRSEALPRCKELAW 1275
W ++ +G YS KSGY ++ + + ++ L PSL +++ W+ + P+ W
Sbjct: 1012 WEYSRSGHYSVKSGYWVMTEIINQ---RNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLW 1068
Query: 1276 RAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAI----- 1330
R + L V +L R + + C C ET +H+ CP + W SPL
Sbjct: 1069 RCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGE 1128
Query: 1331 -RVASFSSLHELAVAFLSTAEEDFIPVFQAW-LYTLWEARNALIFNNKPVSMESLLQRLS 1388
+ F ++H + S EE W L+ LW+ RN L+F + + ++ + +
Sbjct: 1129 WAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKAT 1188
Query: 1389 TLLEMPTLVYAP---VGRAQRDMASSWSRPQRGTTKVNVDASFQYTIFSIHYAYFILNSL 1445
++ P V + RD W P G K N D ++ + + + + N
Sbjct: 1189 EDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHT 1248
Query: 1446 LRI 1448
R+
Sbjct: 1249 GRL 1251
Score = 238 bits (607), Expect = 1e-60
Identities = 146/484 (30%), Positives = 235/484 (48%), Gaps = 23/484 (4%)
Query: 384 MRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKM---YTSEVLKNRGMGGLPNVF 440
MR+L WNC+G+GN V L+ + P+V+F ETK Y V+ + G L V
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 441 PVQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGFPEEQ 500
P+ ++GGL LMW V++ +L + I L+ D ++ +YG P +
Sbjct: 61 PI-------GKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKE--FYLTCIYGEPVQA 111
Query: 501 NKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLH 560
+ W+ + L R PW+ GDFN+++ P++K+GG + E ++C L
Sbjct: 112 ERGELWERLTRL-GLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLW 170
Query: 561 DVGVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICC 620
+V SGY+F+W R V+ RLD +AN AW L+P + T+L + SDH+PL+
Sbjct: 171 EVNHSGYQFSWYGNRN-DELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNL 229
Query: 621 GSRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAMG---LTAKLSSLGSSLKDW 677
RK + F++++ W+Q E K+L+ W + S + K++S + W
Sbjct: 230 VGDNWRK----WAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKW 285
Query: 678 GREKFGDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRAN 737
R +I + + L Q ++ RE + L +E +W ++SR
Sbjct: 286 KRVSKPSSAVRIQELQFKLDAATKQIPFDR--RELARLKKELSQEYNNEEQFWQEKSRIM 343
Query: 738 WLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPS 797
W+R GD+NT +FH RR +N I+K+ D+ GRE+ D ++GRV YF LF S
Sbjct: 344 WMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVG 403
Query: 798 GMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDII 857
+ + V+ L P TK +V+ A F ++P K PG DG YQ+ W+ +
Sbjct: 404 YTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETM 463
Query: 858 GDDV 861
GD +
Sbjct: 464 GDQI 467
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 314 bits (805), Expect = 1e-83
Identities = 173/537 (32%), Positives = 283/537 (52%), Gaps = 17/537 (3%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L G++ I+V +AP ISHLLFADD +LF +A ++++ I ++ +Y ++GQ+
Sbjct: 1023 LLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQL 1082
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVW 987
IN K + ++ S + + L + + E DKYLGLPT G+ F +++R+W
Sbjct: 1083 INPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIW 1142
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASR 1047
KK+ W E +LS G+EVLIK+V QAIP YVM F LP+S+C +L + F+W + +
Sbjct: 1143 KKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGK 1202
Query: 1048 RGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRT 1107
R HW W +L + K GGLGF+D + FN +L+ + WR+ PD+L A++ KA Y+P
Sbjct: 1203 RKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNG 1262
Query: 1108 DLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GGAPLLFRE 1164
+ D G S W +I + KG WRIG+G+ V+VW+D WLP P+ +
Sbjct: 1263 SIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKN 1322
Query: 1165 DLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVN 1224
+ +W V+DL++ +G W+ + +F P V+ IL + +D + W
Sbjct: 1323 NCRIKW----VADLMLD-NGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKL 1377
Query: 1225 GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPV 1284
G +S ++ Y+L ++ +E SSSSS N+ + W+ W+ + K WRA LP
Sbjct: 1378 GNFSVRTAYRLAENWAKEEASSSSSDVNIRKA-WELLWKCNVPSKVKIFTWRATSNCLPT 1436
Query: 1285 RVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSLHELAVA 1344
+ + R +++ D C +CG E+E H CP + LW A + ++ H L +
Sbjct: 1437 WDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPS 1496
Query: 1345 F----LSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMES----LLQRLSTLLEM 1393
+ L+ + P+F L+ +W N +I S+E+ L + +LLE+
Sbjct: 1497 WLFNRLALLPDHEQPMFLMVLWRIWFVHNEIIHGKPSPSIEASQRFLQSYMKSLLEI 1553
Score = 231 bits (589), Expect = 1e-58
Identities = 151/487 (31%), Positives = 228/487 (46%), Gaps = 64/487 (13%)
Query: 379 APPSSMRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPN 438
AP +M L WNCRG+GN V L L+ + VF ET+ ++ + R GL
Sbjct: 429 APSGAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRG 488
Query: 439 VFPVQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHI-AFSLVHPDHHDPM-HMLAVYGF 496
V G +GGL L W V V+IL+ + I A+ + P+ DP+ H VYG
Sbjct: 489 FAGVSSDGM----SGGLALFWHESVHVEILNKNERFIDAYIRLSPN--DPLWHATFVYGE 542
Query: 497 PEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCST 556
P +N+ + W L+ S+ Q ++ WL GDFN+ L + P + A MQ T
Sbjct: 543 PRVENRHKMWSLLNSI-KQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDT 601
Query: 557 CDLHDVGVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPL 616
C+LHD+G+SG T+ N+R V+ RLD ALA+D W L+ +V HL S+H P+
Sbjct: 602 CELHDLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPI 661
Query: 617 LICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAMGLTAKLSSLGSSLKD 676
++ L S+ D
Sbjct: 662 VL--------------------------------------------------KLHGSVPD 671
Query: 677 --WGREKFGDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRS 734
W ++K+ +I +++ T+ L L + +R+T + ++ LL ++E+ W QRS
Sbjct: 672 QSWSKKKYKNIGRELEKTRKKLSNLLEAGTDKAAIRQTSD---YMNELLYREEMLWLQRS 728
Query: 735 RANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSS 794
R NWL+ GD+NT FFH + R K+N I K+RD G + ++ YF +FT+
Sbjct: 729 RVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTAD 788
Query: 795 SPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHW 854
L+ +VT L F++ ++ ALFQ+ P KAPG DGF A FYQR+W
Sbjct: 789 PNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNW 848
Query: 855 DIIGDDV 861
I +D+
Sbjct: 849 GCIKNDI 855
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 312 bits (800), Expect = 5e-83
Identities = 193/591 (32%), Positives = 290/591 (48%), Gaps = 28/591 (4%)
Query: 856 IIGDDVAHFCLQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISD 915
+ GD ++H ++ AS G + G+++ AP I+HL FADD++ F +A + + D
Sbjct: 267 LCGDILSH----LIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKD 322
Query: 916 ILSTYEKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSK 975
+ YE SGQ IN+ KS+++ V ++ LK LL + KYLGLP G+ K
Sbjct: 323 VFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKK 382
Query: 976 SQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGM 1035
++FN++ DRV ++ W KFLS AG+E+L+KSVA A+P Y MSCF LP + +E++ +
Sbjct: 383 KEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESL 442
Query: 1036 IAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLL 1095
+ F+W +++RGI WV W L K +GGLGFRD FN +L+ K WRI P++L
Sbjct: 443 LMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLF 502
Query: 1096 AQIFKAAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP 1155
A++ KA YF + DAK + SY W+S+L + KG R+ IGDGK +++ DN +
Sbjct: 503 ARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVD 562
Query: 1156 GGAPLLFREDLVAEWGIHLVSDLIVQPHGG---WNVPLLEMVFAPATVQRILAVPVPLFR 1212
P R L E L D + Q G W+ L+ + I + +
Sbjct: 563 SHPP---RPLLTDEQHNGLSLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRS 619
Query: 1213 GDDCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPS--LWKKFWRSEALPRC 1270
D L W + G Y+ +SGY L T + ++ + H S L K W +P+
Sbjct: 620 KTDRLIWSYNSTGDYTVRSGYWL---STHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKL 676
Query: 1271 KELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAI 1330
K WR + LP L RGM +D CP C E E+ +H CP W S +
Sbjct: 677 KHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPL 736
Query: 1331 RVASFSS------LHELAVAFLSTAEEDFIPVFQAW-LYTLWEARNALIFNNKPVSMESL 1383
+S S + + + +T D + W L+ +W+ARN ++FNN S
Sbjct: 737 YRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSIT 796
Query: 1384 LQRLSTLLE---MPTLVYAPVGRAQRDMA---SSWSRPQRGTTKVNVDASF 1428
+ R T P +R A ++W +PQ K N DASF
Sbjct: 797 VVRAKAETNEWLNATQTQGPRRLPKRTTAAGNTTWVKPQMPYIKCNFDASF 847
Score = 53.9 bits (128), Expect = 4e-05
Identities = 32/90 (35%), Positives = 49/90 (53%), Gaps = 8/90 (8%)
Query: 776 DPNIGRVLGDYFTSLFTSS----SPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEAL 831
D IG +FT +FT++ SP D + V N + + L++ F ++ EA+
Sbjct: 3 DGEIGCHAQKFFTDIFTTNGIQVSPIDFADFPSSVTNIINSE----LTQDFRDSEIFEAI 58
Query: 832 FQMHPTKAPGLDGFPALFYQRHWDIIGDDV 861
Q+ KAPG DG A FY++ WDI+G+DV
Sbjct: 59 CQIGDDKAPGPDGLTARFYKQCWDIVGNDV 88
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 312 bits (800), Expect = 5e-83
Identities = 192/589 (32%), Positives = 290/589 (48%), Gaps = 34/589 (5%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L + G+L +K+ ++AP ISHLLFADD +LF +A +A + ++++ Y A+GQ+
Sbjct: 165 LLEDKVAQGALSPVKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQL 224
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVW 987
IN K + + + + ++ L + D+YLG PT G+ F +++R+W
Sbjct: 225 INPAKCSIMFGESSPPQTRDVIRVTLQIANSGFEDRYLGFPTPEGRMCKGKFQSLQERIW 284
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASR 1047
K+L W E LS G+EVLIKSV Q IP YVM F LP+S+C EL + F+W + +
Sbjct: 285 KRLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGK 344
Query: 1048 RGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRT 1107
R HW W L R K +GGLGFRDF+ FN +L+ + WR+ PD+L A++ KA YFP
Sbjct: 345 RKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNG 404
Query: 1108 DLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GGAPLLFRE 1164
L D G S W +I + +G WRIG+GK V++WRD WLP P+ +
Sbjct: 405 SLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKG 464
Query: 1165 DLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVN 1224
+ +W L+S+ +G W+ + VF P + I ++ V + DD + W +
Sbjct: 465 NCRLKWVSELLSE-----NGAWDETRVNQVFLPVDAEAICSIRVSSRQEDDFVAWHPDKH 519
Query: 1225 GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPV 1284
G +S +S Y L +L SSSSS +W W++ A + + AWRA L
Sbjct: 520 GKFSVRSAYGLACNLVNMETSSSSSSARC-KRMWNLIWQTNAPQKVRIFAWRAATNCLAT 578
Query: 1285 RVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLA--IRVASFSSLHELA 1342
+ R ++ D C +CG E+E HV CP + LW A A I + + ++
Sbjct: 579 MENKAKRKLEQSDICLVCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNLCNDPG 638
Query: 1343 VAF--LSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMES----LLQRLSTLLEMPTL 1396
F L + VF L+ +W RN ++ +P +E+ L + +LLE+
Sbjct: 639 WIFDQLEILLDYERTVFLLILWRIWFVRNEIVHGKQPPPIEASKRFLESYVKSLLEIRQH 698
Query: 1397 VYA-----------------PVGRAQRDMASSWSRPQRGTTKVNVDASF 1428
A P R D W +P G KVNVD SF
Sbjct: 699 PQANVEKGKHVISFVNGKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSF 747
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 306 bits (784), Expect = 3e-81
Identities = 190/591 (32%), Positives = 294/591 (49%), Gaps = 28/591 (4%)
Query: 856 IIGDDVAHFCLQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISD 915
+ GD ++H ++NG AS G L G+++ AP I+HL FADD++ F +A + + D
Sbjct: 802 LCGDILSH----LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKD 857
Query: 916 ILSTYEKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSK 975
+ YE SGQ IN+ KSM++ V ++ ++LKQ+L + KYLGLP G+ K
Sbjct: 858 VFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKK 917
Query: 976 SQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGM 1035
++F ++ DRV K+ W +FLS AG+E+++KSVA A+P Y MSCF LP + +E++ +
Sbjct: 918 KEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESL 977
Query: 1036 IAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLL 1095
+ F+W +++RGI WV W L K +GGLGFRD FN +L+ K WR+ P++L
Sbjct: 978 LMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLF 1037
Query: 1096 AQIFKAAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP 1155
A++ KA YF + DAK + SY WAS+L + KG R IGDG+ +++ DN +
Sbjct: 1038 ARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVD 1097
Query: 1156 GGAPL-LFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGD 1214
P L E+ E I+ + + + W+ + + I + + +
Sbjct: 1098 SHPPRPLNTEETYKEMTINNLFER-KGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKP 1156
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPS--LWKKFWRSEALPRCKE 1272
D + W + G Y+ +SGY L LT + ++ + H S L + W +P+ K
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWL---LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKH 1213
Query: 1273 LAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCP-AVQPLWFASPLAIR 1331
WRA+ L L RGM +D CP C E E+ +H CP A W + IR
Sbjct: 1214 FLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIR 1273
Query: 1332 VASFSSLHELAVAFL-----STAEEDFIPVFQAWL-YTLWEARNALIFNNKPVSMESLLQ 1385
S+ E ++ + T DF + WL + +W+ARN ++FN S +
Sbjct: 1274 NQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTV- 1332
Query: 1386 RLSTLLEM-----PTLVYAPVGRAQRDMASS---WSRPQRGTTKVNVDASF 1428
LS E T + R +A + W P K N DA F
Sbjct: 1333 -LSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 1382
Score = 194 bits (493), Expect = 2e-47
Identities = 134/457 (29%), Positives = 216/457 (46%), Gaps = 36/457 (7%)
Query: 418 METKMYTSEVLKNRGMGGLPNVFPVQCAGSGRSRAGGLFLMWSSEVEVDILSASL----N 473
+ET +V K G PNV G R+GGL LMW + V + ++S +
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNG----RSGGLALMWKNNVSLSLISQDERLIDS 245
Query: 474 HIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSP 533
H+ F+ + ++ VYG P + + + WQ ++ + R+ WL GDFN+ILS
Sbjct: 246 HVTFN------NKSFYLSCVYGHPTQSERHQLWQTLEHIS-DNRNAEWLLVGDFNEILSN 298
Query: 534 TDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSGYRFTWSNKRAVPGTVEERLDYALANDA 593
+K+GG + S CD+ D+ G RF+W +R TV+ LD N A
Sbjct: 299 AEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTH-TVKCCLDRVFINSA 357
Query: 594 WDALWPVTEVTHLPRYRSDHNPLLICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTE 653
W A +P E L SDH P+L+ R R+ +FRF+ + K +V
Sbjct: 358 WTATFPYAETEFLDFTGSDHKPVLVHFNESFPR----RSKLFRFDNRLIDIPTFKRIVQT 413
Query: 654 AWG---EGSAMGLTAKLSSLGSSLKDWGREKFGDIPKKISDTKALLQKLQWQTQ--SEQV 708
+W + +T ++SS ++ + ++I ++ L + T+ Q+
Sbjct: 414 SWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQL 473
Query: 709 VRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDD 768
+ + +E+ L +EI+W Q+SR W++ GD+NT +FH R +N + I DD
Sbjct: 474 IPQLQES---LAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDD 530
Query: 769 GGREFVDDPNIGRVLGDYFTSLFTSS----SPSGMQDAANLVANRVTAAHLEVLSEPFTK 824
GR F D IG D+FT++F+++ SP D + V N V L++ F+
Sbjct: 531 QGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD----LTKEFSD 586
Query: 825 LDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGDDV 861
++ +A+ Q+ KAPG DG A FY+ WDI+G DV
Sbjct: 587 TEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDV 623
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 304 bits (779), Expect = 1e-80
Identities = 190/591 (32%), Positives = 293/591 (49%), Gaps = 28/591 (4%)
Query: 856 IIGDDVAHFCLQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISD 915
+ GD ++H ++NG AS G L G+++ AP I+HL FADD++ F +A + + D
Sbjct: 1028 LCGDILSH----LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKD 1083
Query: 916 ILSTYEKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSK 975
+ YE SGQ IN+ KSM++ V ++ + LKQ+L + KYLGLP G+ K
Sbjct: 1084 VFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKK 1143
Query: 976 SQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGM 1035
++F ++ DRV K+ W +FLS AG+E+++KSVA A+P Y MSCF LP + +E++ +
Sbjct: 1144 KEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESL 1203
Query: 1036 IAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLL 1095
+ F+W +++RGI WV W L K +GGLGFRD FN +L+ K WR+ P++L
Sbjct: 1204 LMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLF 1263
Query: 1096 AQIFKAAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP 1155
A++ KA YF + DAK + SY WAS+L + KG R IGDG+ +++ DN +
Sbjct: 1264 ARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVD 1323
Query: 1156 GGAPL-LFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGD 1214
P L E+ E I+ + + + W+ + + I + + +
Sbjct: 1324 SHPPRPLNTEETYKEMTINNLFER-KGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKP 1382
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPS--LWKKFWRSEALPRCKE 1272
D + W + G Y+ +SGY L LT + ++ + H S L + W +P+ K
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWL---LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKH 1439
Query: 1273 LAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLA-IR 1331
WRA+ L L RGM +D CP C E E+ +H CP W S + IR
Sbjct: 1440 FLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIR 1499
Query: 1332 VASFSSLHELAVAFL-----STAEEDFIPVFQAWL-YTLWEARNALIFNNKPVSMESLLQ 1385
S+ E ++ + T DF + WL + +W+ARN ++FN S +
Sbjct: 1500 NQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTV- 1558
Query: 1386 RLSTLLEM-----PTLVYAPVGRAQRDMASS---WSRPQRGTTKVNVDASF 1428
LS E T + R +A + W P K N DA F
Sbjct: 1559 -LSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 1608
Score = 203 bits (517), Expect = 3e-50
Identities = 141/482 (29%), Positives = 227/482 (46%), Gaps = 36/482 (7%)
Query: 393 GLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPNVFPVQCAGSGRSRA 452
G+G P L L D++F +ET +V K G PNV G R+
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNG----RS 446
Query: 453 GGLFLMWSSEVEVDILSASL----NHIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRTWQL 508
GGL LMW + V + ++S +H+ F+ + ++ VYG P + + + WQ
Sbjct: 447 GGLALMWKNNVSLSLISQDERLIDSHVTFN------NKSFYLSCVYGHPTQSERHQLWQT 500
Query: 509 VKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSGYR 568
++ + R+ WL GDFN+ILS +K+GG + S CD+ D+ G R
Sbjct: 501 LEHIS-DNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDR 559
Query: 569 FTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGMRKE 628
F+W +R TV+ LD N AW A +P E+ L SDH P+L+ R
Sbjct: 560 FSWVGERHTH-TVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPR-- 616
Query: 629 LQRTSMFRFEELWLQEEECKELVTEAWG---EGSAMGLTAKLSSLGSSLKDWGREKFGDI 685
R+ +FRF+ + K +V +W + +T ++SS ++ +
Sbjct: 617 --RSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNS 674
Query: 686 PKKISDTKALLQKLQWQTQ--SEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGD 743
++I ++ L + T+ Q++ + +E+ L +EI+W Q+SR W++ GD
Sbjct: 675 EQRIKKLQSSLNRAMESTRRVDRQLIPQLQES---LAKAFSDEEIYWKQKSRNQWMKEGD 731
Query: 744 KNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSS----SPSGM 799
+NT +FH R +N + I DD GR F D IG D+FT++F+++ SP
Sbjct: 732 QNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDF 791
Query: 800 QDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGD 859
D + V N V L++ F+ ++ +A+ Q+ KAPG DG A FY+ WDI+G
Sbjct: 792 ADFKSTVTNTVNLD----LTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGY 847
Query: 860 DV 861
DV
Sbjct: 848 DV 849
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 300 bits (768), Expect = 2e-79
Identities = 188/589 (31%), Positives = 282/589 (46%), Gaps = 34/589 (5%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L + SL KV + AP ISHLLFADD +LF +A EA + ++LS+Y +GQ+
Sbjct: 1388 LLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQL 1447
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVW 987
IN K + + + ++L V+ D+YLG PT G+ F ++ ++W
Sbjct: 1448 INPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIW 1507
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASR 1047
K++ W E LS G+EVLIK+V QAIP YVM F LP+S+ +L + F+W +
Sbjct: 1508 KRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQ 1567
Query: 1048 RGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRT 1107
R HW W +L + K GGLGFRD++ FN +L+ + WR+ + PD+L A++ KA YFP
Sbjct: 1568 RKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHG 1627
Query: 1108 DLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GGAPLLFRE 1164
L D G S AW SI + KG WR+G+G +++WRD+WLP P+ +
Sbjct: 1628 SLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKA 1687
Query: 1165 DLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVN 1224
+ +W VSDLI + G W+VP + F + IL + + +D + W N
Sbjct: 1688 NCRLKW----VSDLITE-DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKN 1742
Query: 1225 GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPV 1284
GM+S +S Y+L L SSSS N++ + W+ W+ + + K AWR L
Sbjct: 1743 GMFSVRSAYRLAAQLVNIEESSSSGTNNINKA-WEMIWKCKVPQKVKIFAWRVASNCLAT 1801
Query: 1285 RVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSLHELAVA 1344
V+ + R ++ D C +C E E + H C LW + V+ L
Sbjct: 1802 MVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRF 1861
Query: 1345 FLSTAEEDFIPVFQA-WLYTLWE---ARNALIFNNKPVSMESLLQRLSTLLEM------- 1393
+L E QA +L TLW RN LI E+ + + + +++
Sbjct: 1862 WLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQA 1921
Query: 1394 --------------PTLVYAPVGRAQRDMASSWSRPQRGTTKVNVDASF 1428
L P R + W RP+ G K+NVD SF
Sbjct: 1922 PQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSF 1970
Score = 230 bits (586), Expect = 3e-58
Identities = 129/419 (30%), Positives = 210/419 (49%), Gaps = 10/419 (2%)
Query: 447 SGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRTW 506
S +GGL L W V VD+ + +I + H+ VYG P +N+ R W
Sbjct: 789 SSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHRMW 848
Query: 507 QLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSG 566
L++++ Q +PW GDFN+ + + P MQ+ C+LHD+G G
Sbjct: 849 SLLRTI-HQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFKG 907
Query: 567 YRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGMR 626
T+ NKR V+ RLD +A+D W ++ +V HL SDH P+L+ +
Sbjct: 908 VPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKDPH 967
Query: 627 KELQRTSMFRFEELWLQEEECKELVTEAW---GEGSAMG-LTAKLSSLGSSLKDWGREKF 682
+ R +E +W +E E +++ EAW GE + +G + L+ + ++L+ W R K
Sbjct: 968 Q--LRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKV 1025
Query: 683 GDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFG 742
++ +++ + L +L V+R + ++ LL ++E+ W QRSR NWL+
Sbjct: 1026 KNVGRELEKARKKLAELIESNADRTVIRNATD---HMNELLYREEMLWLQRSRVNWLKDE 1082
Query: 743 DKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDA 802
D+NT FFH +A R K+N I K+RD + + +YF ++T+ +
Sbjct: 1083 DRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETV 1142
Query: 803 ANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGDDV 861
L+ +VT E L E FT+ ++ +A+FQ+ P K+PG DGFPA FYQR+W I D+
Sbjct: 1143 TRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADI 1201
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 298 bits (763), Expect = 9e-79
Identities = 177/514 (34%), Positives = 264/514 (50%), Gaps = 25/514 (4%)
Query: 888 PVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFN 947
P+I HLLFADD++ +A +E + IL Y A+GQ+INL KS ++ V
Sbjct: 522 PIIHHLLFADDSLFICKANKDEVVVLQSILGAYGAATGQIINLAKSSITFGSKVETVKKA 581
Query: 948 ELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLI 1007
E++ LG+ YLGLP SK ++ +++K R+ KL W K LS+ G+E+++
Sbjct: 582 EIQTCLGIFKEGDASTYLGLPECFSGSKIEMLDYIKVRLKSKLSSWFSKSLSQGGKEIML 641
Query: 1008 KSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGGL 1067
K+VA A+P + MSCF LP + C L +A F+W+ + +R IHW+ W LC K GGL
Sbjct: 642 KAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGL 701
Query: 1068 GFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPSYAWASILR 1127
GFRD FN +L+ K WR+ PD L A++ K+ YFP + D+ G RPS+ W SIL
Sbjct: 702 GFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILH 761
Query: 1128 SKLIFDKGARWRIGDGKKVQVWRDNWLPGG---APLLFREDLVAEWGIHLVSDLIVQPHG 1184
+ + +G R+G+GK ++VW D WL AP + + + LVSDLI
Sbjct: 762 GRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIKNPIINVDL---LVSDLIDYEKR 818
Query: 1185 GWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLL--QSLTQE 1242
W + LE F P V +I P+ DD W +G YS K GY L Q+L Q
Sbjct: 819 DWRLDKLEEQFFPDDVVKI-RENRPVVSLDDFWIWKHNKSGDYSVKLGYWLASNQNLGQV 877
Query: 1243 GVSSSSSGGNLHPS---LWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRC 1299
+ + + PS L + W+ + P+ K W+ + G +PV L RGM +D RC
Sbjct: 878 AIEAM-----MQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRC 932
Query: 1300 PLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASF--SSLHELAVAFLSTAEEDFIPV- 1356
CGCE E+ HV C + +W S + + + F S++ FL + PV
Sbjct: 933 QTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYANLYHFLINRDNLKWPVE 992
Query: 1357 ----FQAWLYTLWEARNALIFNNKPVS-MESLLQ 1385
F ++ +W+ RN F K + +E++L+
Sbjct: 993 LRRSFPWIIWRIWKNRNLFFFEGKRFTVLETILK 1026
Score = 89.4 bits (220), Expect = 8e-16
Identities = 60/225 (26%), Positives = 102/225 (44%), Gaps = 20/225 (8%)
Query: 435 GLPNVFPVQCAGSGRSRAGGLFLMWSSEVEVDILSASLN----HIAFSLVHPDHHDPMHM 490
G V+ ++ G R GGL + W V++DI A N + F V+ +
Sbjct: 18 GYDRVYSIEPVG----RCGGLAIFWKESVKIDIKFADKNLIDLQVQFGAVN------FFL 67
Query: 491 LAVYGFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEV 550
VYG P+ + + W+ + S+ GR W GDFN+IL +K+GG ++ +
Sbjct: 68 SCVYGDPDFKKRKIVWERL-SIIGVGRRERWCMVGDFNEILHNEEKIGGPKRCESYFKPF 126
Query: 551 MATCSTCDLHDVGVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYR 610
C + ++ +G RFTW+ +R ++ RLD A N W +P + L
Sbjct: 127 KEMHEACGMVELASTGNRFTWAGRR-YDLWIQSRLDRAFGNKEWLKNFPASNQQFLEMRG 185
Query: 611 SDHNPLLICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTEAW 655
SDH P+L+ + M + FRF++ L + +E + ++W
Sbjct: 186 SDHRPVLL----KLMASQDSYKGQFRFDKRLLHKPRVEETILQSW 226
Score = 61.2 bits (147), Expect = 2e-07
Identities = 31/82 (37%), Positives = 46/82 (55%)
Query: 780 GRVLGDYFTSLFTSSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKA 839
G V YF++LF SS+PSG +V E L P + ++++A+F + P+ A
Sbjct: 274 GEVATAYFSNLFKSSNPSGFSHWFVGFEAKVIDQMNERLIRPVSSEEIKDAVFSIDPSSA 333
Query: 840 PGLDGFPALFYQRHWDIIGDDV 861
PG DG LF+Q +W I+GD V
Sbjct: 334 PGSDGMSGLFFQHYWAIVGDHV 355
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 294 bits (753), Expect = 1e-77
Identities = 179/576 (31%), Positives = 287/576 (49%), Gaps = 21/576 (3%)
Query: 866 LQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASG 925
+ +L + + GI+ P ++HLLF DD L RAT ++ + LS Y SG
Sbjct: 604 IHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISG 663
Query: 926 QVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDR 985
Q+IN++KS ++ V + + +K G+ KYLGLP + SK +F ++K++
Sbjct: 664 QLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEK 723
Query: 986 VWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDA 1045
+ L GW +K LS+ G+E+L+KS+A A+P Y+M+CF LP LC +L ++ F+W
Sbjct: 724 LQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSME 783
Query: 1046 SRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFP 1105
IHW+ L K GG GF+D + FN +L+ K WR++S ++++QIFK+ YF
Sbjct: 784 FSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFM 843
Query: 1106 RTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGG---APLLF 1162
TD +A++G RPSY W SIL + + + G + IG+G++ VW D WL G P+
Sbjct: 844 NTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPM-- 901
Query: 1163 REDLVAEWGIHL-VSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPW 1221
+L + IH+ VS LI WN+ L +F VQ I+ PL +D W
Sbjct: 902 --NLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMH-QRPLISSEDSYCWAG 958
Query: 1222 TVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPS---LWKKFWRSEALPRCKELAWRAI 1278
T NG+Y+ KSGY + ++E + +++PS L+ K W E +P+ K W+A+
Sbjct: 959 TNNGLYTVKSGY---ERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKAL 1015
Query: 1279 KGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASF-SS 1337
KG L V LR RG+ D C C E ET +H+ CP + +W S + F +S
Sbjct: 1016 KGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTS 1075
Query: 1338 LHELAVAFLSTAEEDFIP----VFQAW-LYTLWEARNALIFNNKPVSMESLLQRLSTLLE 1392
+ + ++ IP W L+ +W+ RN +F ++ ++ +
Sbjct: 1076 IFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECN 1135
Query: 1393 MPTLVYAPVGRAQRDMASSWSRPQRGTTKVNVDASF 1428
+ W+ P G K N+ ++
Sbjct: 1136 LWINAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAW 1171
Score = 129 bits (323), Expect = 1e-27
Identities = 94/396 (23%), Positives = 168/396 (41%), Gaps = 19/396 (4%)
Query: 451 RAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGFPEEQNKVRTWQLVK 510
++GGL + W + +E+D L N + + + VYG P + +
Sbjct: 27 KSGGLAIFWKNHLEIDFLFEDKNLLDLKV--SQGKKSWFVSCVYGNPVLHLRYLLLDKLS 84
Query: 511 SLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSGYRFT 570
S+ Q R+ W GDFNDILS KLGG + Q CD+H +G SG FT
Sbjct: 85 SIGVQ-RNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFT 143
Query: 571 WSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGMRKELQ 630
W R ++ +LD N W ++ + L + S H P+L+ + +
Sbjct: 144 WGGTRN-DQWIQCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLV----NFVNDQEV 198
Query: 631 RTSMFRFEELWLQEEECKELVTEAW---GEGSAMGLTAKLSSLGSSLKDWGREKFGDIPK 687
F +++ + ++ +C +W G ++ ++ W + +
Sbjct: 199 FRGQFCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRMVKCRKAISGWKKNSDFNAQN 258
Query: 688 KISDTKALLQK---LQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGDK 744
+I ++ L + Q+ S V +T+ L ++E +W +S+ WL GD+
Sbjct: 259 RILRLRSELDEEKSKQYPCWSRISVIQTQ-----LGVAFREEESFWRLKSKDKWLFGGDR 313
Query: 745 NTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDAAN 804
N+ FF R +N + + D+ G E + G + YF +LF SS P+ Q A +
Sbjct: 314 NSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALD 373
Query: 805 LVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAP 840
RV+ + L++ T+L++ A+F ++ AP
Sbjct: 374 GFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP 409
>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
gi|14018103|gb|AAK52166.1| putative reverse transcriptase
[Oryza sativa]
Length = 1185
Score = 294 bits (753), Expect = 1e-77
Identities = 174/473 (36%), Positives = 248/473 (51%), Gaps = 22/473 (4%)
Query: 861 VAHFCLQVLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTY 920
VA +L G + G L GI+V ++AP+ISHLLFADD+++ +A N A + IL Y
Sbjct: 465 VAEGLSSMLQGAENRGDLVGIRVCREAPMISHLLFADDSLILMQADKNNADHLKAILDIY 524
Query: 921 EKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFN 980
+ SGQ I+ KS + SRN + L + DKYLGLP +IG KS F
Sbjct: 525 CQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALNDKYLGLPAMIGVDKSDCFR 584
Query: 981 FVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFF 1040
+ DRV ++ G KEK LS G+EVLIKS+AQAIP + MS F +P +C + IA+F+
Sbjct: 585 HLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAIARFW 644
Query: 1041 WAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFK 1100
W D + R IHW W +C K GGLGFRD FN +++ K WR PD+L A++ +
Sbjct: 645 WGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMR 704
Query: 1101 AAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GG 1157
Y+P ++ A+ SYAW SIL F KG WRIGDG +V +W D+ +P G
Sbjct: 705 CKYYPDGNILRARPKKGSSYAWQSILSGSECF-KGYIWRIGDGSQVNIWEDSLIPSSSNG 763
Query: 1158 APLLFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCL 1217
L R + I V +LI GGW+ L++ +F P RIL +P+ R +D +
Sbjct: 764 KVLTPRGRNI----ITKVEELINPVSGGWDEDLIDTLFWPIDANRILQIPISAGR-EDFV 818
Query: 1218 FWPWTVNGMYSSKSGYQL-------LQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRC 1270
W T +G++S +S Y + +G SSSS +W W+ E P+
Sbjct: 819 AWHHTRSGIFSVRSAYHCQWNAKFGSKERLPDGASSSSR------PVWDNLWKLEIPPKI 872
Query: 1271 KELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLW 1323
K AWR + G++P + L + + V CP+C E H+ C + +W
Sbjct: 873 KIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCRRAKLIW 925
Score = 63.5 bits (153), Expect = 5e-08
Identities = 37/120 (30%), Positives = 60/120 (49%)
Query: 756 RRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDAANLVANRVTAAHL 815
RR+R I+ + D+ G D+ + ++ YF +LF++ + V +VT
Sbjct: 225 RRRRKKIKGLIDENGCFQTDEDRMSNIVYGYFQNLFSAEVTQIDGSSLLDVQRKVTGDMN 284
Query: 816 EVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGDDVAHFCLQVLNGTASP 875
L P+T +V+ ALF + KAPG DG A+FY+R WD++ D+ L +N P
Sbjct: 285 FGLLAPYTAEEVKNALFSIGDLKAPGPDGLHAVFYKRFWDMLESDLVKEVLDAINTMKIP 344
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 294 bits (752), Expect = 2e-77
Identities = 187/589 (31%), Positives = 279/589 (46%), Gaps = 34/589 (5%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L + SL KV + AP ISHLLFADD +LF +A EA + ++LS+Y +GQ+
Sbjct: 64 LLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQL 123
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVW 987
IN K + + + ++L V+ D+YL PT G+ F ++ ++W
Sbjct: 124 INPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIW 183
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASR 1047
K++ W E LS G+EVLIK+V QAIP YVM F LP+S+ +L + F+W +
Sbjct: 184 KRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQ 243
Query: 1048 RGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRT 1107
R HW W +L + K GGLGFRD+ FN +L+ + WR+ + PD+L A++ KA YFP
Sbjct: 244 RKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHG 303
Query: 1108 DLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GGAPLLFRE 1164
L D G S AW SI + KG WR+G+G +++WRD WLP P+ +
Sbjct: 304 SLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKA 363
Query: 1165 DLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVN 1224
+ +W VSDLI + G W+VP + F + IL + + +D + W N
Sbjct: 364 NCRLKW----VSDLITE-DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKN 418
Query: 1225 GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPV 1284
GM+S +S Y+L L SSSS N++ + W+ W+ + + K AWR L
Sbjct: 419 GMFSVRSAYRLAAQLVNIEESSSSGTNNINKA-WEMIWKCKVPQKVKIFAWRVASNCLAT 477
Query: 1285 RVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSLHELAVA 1344
V+ + R ++ D C +C E E + H C LW + V+ L
Sbjct: 478 MVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRF 537
Query: 1345 FLSTAEEDFIPVFQA-WLYTLWE---ARNALIFNNKPVSMESLLQRLSTLLEM------- 1393
+L E QA +L TLW RN LI E+ + + + +++
Sbjct: 538 WLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQA 597
Query: 1394 --------------PTLVYAPVGRAQRDMASSWSRPQRGTTKVNVDASF 1428
L P R + W RP+ G K+NVD SF
Sbjct: 598 PQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSF 646
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 292 bits (748), Expect = 5e-77
Identities = 156/445 (35%), Positives = 241/445 (54%), Gaps = 5/445 (1%)
Query: 881 IKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRN 940
+KV + AP +SHLLFADD++LF +A + +A I + L YE+ +GQ+IN + L S
Sbjct: 655 LKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSAL 714
Query: 941 VLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSR 1000
+ +K +L V+ DK LGLPT G+ K++ F +K+R K+L W E+FLS
Sbjct: 715 CPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSL 774
Query: 1001 AGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCR 1060
AG+E LIKSVAQA+P+Y M F +P+ C E + ++ F+W + + +HW+ W L
Sbjct: 775 AGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTS 834
Query: 1061 HKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPSY 1120
K GGLGFRD + FN +L+ + WR+ PD+L A++ KA Y+P + D S
Sbjct: 835 PKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSP 894
Query: 1121 AWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWG-IHLVSDLI 1179
W I+ + KG WRIGDG K ++WR++W+ G L E W + V +LI
Sbjct: 895 TWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEK--KTWNRVIYVRELI 952
Query: 1180 VQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQSL 1239
V WN PL+ + IL + +P +D W + G++S +S Y+L +L
Sbjct: 953 VTDTKTWNEPLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNL 1012
Query: 1240 TQE--GVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDD 1297
++ +SSSSGG +W W++ P+ + AW+ + L + + R +++
Sbjct: 1013 ARKTSEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFG 1072
Query: 1298 RCPLCGCEEETNDHVFVCCPAVQPL 1322
CP+CG +EET H V C + L
Sbjct: 1073 TCPICGQKEETGFHATVECTLAKAL 1097
Score = 184 bits (467), Expect = 2e-44
Identities = 110/346 (31%), Positives = 173/346 (49%), Gaps = 49/346 (14%)
Query: 520 PWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSGYRFTWSNKRAVPG 579
PWL GDFND + + + M++ CDL D+G +T+ N +A P
Sbjct: 155 PWLMIGDFNDAMWQIEHRSRVKHSERQMRDFREVLVECDLQDIGFQCVPWTYDNNQASPN 214
Query: 580 TVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGMRKELQRTSMFRFEE 639
V+ RLD A+A+ W A++ + HL SDH PLL+ G G ++ +R+ + FE
Sbjct: 215 NVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVPLLLEKG--GNMQQRRRSKINCFEA 272
Query: 640 LWLQEEECKELVTEAWGEGSAM----GLTAKLSSLGSSLKDWGREKFGDIPKKISDTKAL 695
+W + + + E+W +G + KL+ +LK W R+K G+I K I +
Sbjct: 273 VWERVKSFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIKKSIERCRRE 332
Query: 696 LQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGDKNTNFFHQKATQ 755
L++++ + + E + +I L LL ++EIWW QRSR WL+ GD+NT +FH KA+
Sbjct: 333 LEEMRMRGR-EDSEPDVHRLKIFLQELLHREEIWWKQRSRITWLKEGDRNTRYFHLKASW 391
Query: 756 RRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDAANLVANRVTAAHL 815
R ++N+I+K+R DD G
Sbjct: 392 RARKNLIKKLRRS------DDEMNG----------------------------------- 410
Query: 816 EVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIGDDV 861
+L++PFT ++ +ALFQ+ P KAPG DGFPA F+QR+W ++ DV
Sbjct: 411 -MLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDV 455
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 286 bits (733), Expect = 3e-75
Identities = 174/588 (29%), Positives = 286/588 (48%), Gaps = 46/588 (7%)
Query: 864 FCLQVLNGTASPGS----LHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILST 919
FC +VL+ +HG+K+ + ISHLLFADD++ F RA+ ++ I
Sbjct: 1008 FCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKK 1067
Query: 920 YEKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIF 979
YE+ASGQ IN KS + + + L +LLG+ V KYLGLP +G+ K ++F
Sbjct: 1068 YEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELF 1127
Query: 980 NFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKF 1039
++ +V ++ +GW +LS AG+E++IK++A A+P Y M+CF+LP +C E++ +I F
Sbjct: 1128 EYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAF 1187
Query: 1040 FWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIF 1099
+W +++G LGF+D FN +L+ K WRI + P +LLA+++
Sbjct: 1188 WWG------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLY 1229
Query: 1100 KAAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAP 1159
K Y+P T A KG SY W SI KL+ +G R R+GDG+ ++W D WLP P
Sbjct: 1230 KGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPP 1289
Query: 1160 LLFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFW 1219
R ++ E V+DL + W+ + E V P Q ++ + + D W
Sbjct: 1290 RPARGPILDE--DMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKW 1347
Query: 1220 PWTVNGMYSSKSGYQLLQ--SLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRA 1277
+T N Y+ +SGY + +LT+E + + G L ++ WR + P+ K WR
Sbjct: 1348 AYTRNTQYTVRSGYWVATHVNLTEEEIINPLEG---DVPLKQEIWRLKITPKIKHFIWRC 1404
Query: 1278 IKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPL--AIRVASF 1335
+ G L LR R + D C C +ET +H+ C Q +W ++ + R+
Sbjct: 1405 LSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFT 1464
Query: 1336 SSLHELAVAFLSTAEEDFIPVFQA----W-LYTLWEARNALIFNN--------KPVSMES 1382
+L E L + +P+ W ++ LW++RN +F + +
Sbjct: 1465 DNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQE 1524
Query: 1383 LLQRLSTLLEMPTLVYAPVGRAQRDMASS--WSRPQRGTTKVNVDASF 1428
+ + T++ + + R ++ S WS P G K N D+ +
Sbjct: 1525 ATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGY 1572
Score = 219 bits (557), Expect = 7e-55
Identities = 148/502 (29%), Positives = 232/502 (45%), Gaps = 29/502 (5%)
Query: 374 GGCGAAPPSSMRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKM---YTSEVLKN 430
GG G S MR+ WNC+GLG P V L+ + D++F +ETK YT ++
Sbjct: 354 GGAGTTT-SPMRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDL--- 409
Query: 431 RGMGGLPNVFPVQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHM 490
G+ F C S R +GGL + W + + ++S + + + + + + ++
Sbjct: 410 ----GVKMGFEDMCIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFN--FYL 463
Query: 491 LAVYGFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEV 550
+YG P + W+ ++ + R PW+ GDFN+IL+ +K GG + +Q
Sbjct: 464 SCIYGHPIPSERHHLWEKLQRVSAH-RSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNF 522
Query: 551 MATCSTCDLHDVGVSGYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYR 610
+ C++ D+ G ++W KR T+E LD N W A +P E LP
Sbjct: 523 TNMINCCNMKDLKSKGNPYSWVGKRQNE-TIESCLDRVFINSDWQASFPAFETEFLPIAG 581
Query: 611 SDHNPLLICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEG---SAMGLTAKL 667
SDH P++I K Q FR++ Q E+ + V W G S G KL
Sbjct: 582 SDHAPVIIDIAEEVCTKRGQ----FRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKL 637
Query: 668 SSLGSSLKDWGREKFGDIPKKISDTKALLQKLQWQ-TQSEQVVRETKEAEIALDTLLMQQ 726
L W R + +KI K + + T Q + ++ L+ +
Sbjct: 638 HCCRQELAKWKRRTKTNTAEKIETLKYRVDAAERDHTLPHQTILRLRQD---LNQAYRDE 694
Query: 727 EIWWSQRSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDY 786
E++W +SR W+ GD+NT FF+ R+ RN I+ I D G E D IG+V +Y
Sbjct: 695 ELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENY 754
Query: 787 FTSLFTSSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFP 846
F LFT++ S ++ + +A +VT L + T +V +A+F + +APG DGF
Sbjct: 755 FADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFT 814
Query: 847 ALFYQRHWDIIGDDVAHFCLQV 868
A FY WD+IG+DV CL V
Sbjct: 815 AAFYHHLWDLIGNDV---CLMV 833
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 286 bits (733), Expect = 3e-75
Identities = 159/434 (36%), Positives = 232/434 (52%), Gaps = 12/434 (2%)
Query: 868 VLNGTASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQV 927
+L G+++ I + + AP + HLLFADD LF +A ++A + ++L TY +GQ+
Sbjct: 1268 LLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQL 1327
Query: 928 INLDKSMLSVSRNVLDTSFNELKQLLGVKAVESF-DKYLGLPTIIGKSKSQIFNFVKDRV 986
IN K + ++ N++KQ L + SF DKYLG PT G+ F +++R+
Sbjct: 1328 INPSKCSIMFGQSSPTAVQNQIKQTLQIS--NSFEDKYLGFPTPEGRMTKGKFQSLQERL 1385
Query: 987 WKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDAS 1046
WK++ W EKFLS G+E+LIK+V QA+P YVM F LP+S+C EL ++ F+W +
Sbjct: 1386 WKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKG 1445
Query: 1047 RRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPR 1106
R HW W L K GG+GFRDF+ FN +L+ + WR+ +PD+L A+I KA Y+P
Sbjct: 1446 MRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPN 1505
Query: 1107 TDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLP---GGAPLLFR 1163
L D G S W +I + KG WRIG+GK V++WRD W+P P+ +
Sbjct: 1506 GSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAK 1565
Query: 1164 EDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTV 1223
+ W VSDLI Q G W+ + F P + IL + + DD + W
Sbjct: 1566 RNCRLRW----VSDLIDQ-SGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDK 1620
Query: 1224 NGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILP 1283
G +S +S Y L +L SSSS GN + W W+ A + K AWRAI LP
Sbjct: 1621 LGRFSVRSAYHLAVALAHVDEGSSSS-GNGNSRAWNALWKCNAPQKVKIFAWRAITNSLP 1679
Query: 1284 VRVSLRIRGMDVDD 1297
+ + R ++V D
Sbjct: 1680 TLENKKKRKLEVSD 1693
Score = 162 bits (410), Expect = 8e-38
Identities = 136/488 (27%), Positives = 203/488 (40%), Gaps = 99/488 (20%)
Query: 377 GAAPPSSMRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGL 436
GAA +M L WNCRG+GN V L L+ +VF ET+ +V + R GL
Sbjct: 690 GAA--GAMSCLAWNCRGIGNAVTVRDLCALVKEAGSHIVFLSETRQKIEKVRRLRNRLGL 747
Query: 437 PNVFPVQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPDHHDPMHMLAVYGF 496
V G +GGL L W + V+I+S + +I + + H VYG
Sbjct: 748 RGFAGVNSDGM----SGGLALFWHESIHVEIISMNERYIDAYVRLSVNAPVWHATFVYGE 803
Query: 497 PEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCST 556
P +N+ R W L+ S+ Q D+PWL GDFN+ L + + MQ
Sbjct: 804 PRVENRHRMWALLNSI-KQVSDLPWLVVGDFNETLWQFEHFSLKQRSELQMQAFRDVVQR 862
Query: 557 CDLHDVGVSGYRFTWSNKRAVPGTVEERLDYALANDAWDAL---WPVTEVTHLPRYRSDH 613
CDLHD+G SG +T+ N+R V+ RLD ALA+D W L P+ + T P S
Sbjct: 863 CDLHDLGFSGVPYTYDNRREGRSNVKVRLDRALADDGWRGLCFICPLLDQTIAPSL-SSG 921
Query: 614 NPLLICCGSRGMRKELQRTSMFRFEELWLQEEECKELVTEAWGEGSAMGLTAKLSSLGSS 673
NP+ +E W ++ E++ E+WG G+ LS + +
Sbjct: 922 NPV----------------KCVHYEIYWERDPAISEVIAESWG---VSGVKQDLSDISQA 962
Query: 674 LKDWGREKFGDIPKKISDTKALLQKLQWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQR 733
L + +SD + W +W +++
Sbjct: 963 LF-----------RMMSDLRT------W--------------------------MWRAKK 979
Query: 734 SRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTS 793
++ LR D + T+ +R E + R F DP+I
Sbjct: 980 NKITKLRDSDDTVH----STTKELERMATEYFQ----RLFTADPSIDH------------ 1019
Query: 794 SSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRH 853
+L+ +VT A E L + F++ ++ ALFQ+ P KAPG DGFP FYQR+
Sbjct: 1020 ------SRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRN 1073
Query: 854 WDIIGDDV 861
W I+ DD+
Sbjct: 1074 WAILKDDI 1081
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.334 0.146 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,583,880,163
Number of Sequences: 2540612
Number of extensions: 114664945
Number of successful extensions: 421539
Number of sequences better than 10.0: 890
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 511
Number of HSP's that attempted gapping in prelim test: 409864
Number of HSP's gapped (non-prelim): 4589
length of query: 1449
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1308
effective length of database: 505,134,102
effective search space: 660715405416
effective search space used: 660715405416
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0316.6