BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.9
(344 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65220.1| mRNA export protein, putative [Arabidopsis thalia... 613 e-174
ref|XP_480345.1| putative RAE1 (RNA export 1, S.pombe) homolog [... 608 e-173
ref|NP_917857.1| putative mRNA export protein [Oryza sativa (jap... 582 e-165
gb|AAF14654.1| F23A5.2(form1) [Arabidopsis thaliana] gi|3122671|... 367 e-100
gb|AAH90109.1| MGC97718 protein [Xenopus tropicalis] gi|62751859... 347 2e-94
ref|XP_417495.1| PREDICTED: similar to RAE1 RNA export 1 homolog... 346 5e-94
gb|AAH65853.1| Similar to RAE1 RNA export 1 homolog [Danio rerio] 341 2e-92
gb|AAP12530.1| Rae1/Gle2 [Xenopus laevis] gi|50414519|gb|AAH7719... 340 5e-92
gb|AAH49445.1| Similar to RAE1 RNA export 1 homolog [Danio rerio... 339 6e-92
ref|XP_638901.1| hypothetical protein DDB0185717 [Dictyostelium ... 339 6e-92
emb|CAI21524.1| RAE1 [Homo sapiens] gi|56204088|emb|CAC21461.2| ... 338 2e-91
gb|AAR24621.1| migration-inducing gene 14 [Homo sapiens] 338 2e-91
gb|AAR04856.1| RNA export 1-like protein [Homo sapiens] 337 2e-91
ref|NP_780321.1| RAE1 RNA export 1 homolog [Mus musculus] gi|375... 337 3e-91
ref|NP_001015585.1| RAE1 RNA export 1 homolog [Bos taurus] gi|59... 337 4e-91
ref|XP_342593.1| PREDICTED: similar to RAE1 RNA export 1 homolog... 337 4e-91
gb|AAC28127.1| mRNA-associated protein mrnp41 [Homo sapiens] 335 1e-90
dbj|BAE01343.1| unnamed protein product [Macaca fascicularis] 332 8e-90
ref|XP_543066.1| PREDICTED: similar to RAE1 RNA export 1 homolog... 330 5e-89
dbj|BAC29012.1| unnamed protein product [Mus musculus] 328 1e-88
>gb|AAM65220.1| mRNA export protein, putative [Arabidopsis thaliana]
gi|15220198|ref|NP_178182.1| transducin family protein /
WD-40 repeat family protein [Arabidopsis thaliana]
gi|6503279|gb|AAF14655.1| F23A5.2(form2) [Arabidopsis
thaliana] gi|25387426|pir||A96839 F23A5.2(form2)
[imported] - Arabidopsis thaliana
Length = 349
Score = 613 bits (1582), Expect = e-174
Identities = 281/349 (80%), Positives = 319/349 (90%), Gaps = 5/349 (1%)
Query: 1 MSTF--LSNTNQNPNKSFEVNQPPSDSVSSLCFSPKANLLVATSWDNQVRCWEVARN--- 55
M+TF + N NPNKS+EV P+DS+SSL FSP+A++LVATSWDNQVRCWE++R+
Sbjct: 1 MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGAS 60
Query: 56 VATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDI 115
+A+APKASISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQP+TVAMH+ P+ +
Sbjct: 61 LASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120
Query: 116 AWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVY 175
AWIP M+LL TGSWD+T+KYWDTRQ NPVHTQQLP++CY +SVKHPLMVVGTADRN++V+
Sbjct: 121 AWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVF 180
Query: 176 NLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQGKNFTFKCH 235
NLQNPQ EFKRI SPLKYQTRC+ AFPDQQGFLVGSIEGRVGVHHLDDSQQ KNFTFKCH
Sbjct: 181 NLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCH 240
Query: 236 REGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDG 295
R+GN+IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKAM RC+QPIPCS+FN+DG
Sbjct: 241 RDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDG 300
Query: 296 SIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPRIGATGRK 344
SI+AY+ CYDWSKGAENHNP TAK++I+LHLPQESEVK KPR+GATGRK
Sbjct: 301 SIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVGATGRK 349
>ref|XP_480345.1| putative RAE1 (RNA export 1, S.pombe) homolog [Oryza sativa
(japonica cultivar-group)] gi|38636974|dbj|BAD03234.1|
putative RAE1 (RNA export 1, S.pombe) homolog [Oryza
sativa (japonica cultivar-group)]
gi|38636797|dbj|BAD03038.1| putative RAE1 (RNA export 1,
S.pombe) homolog [Oryza sativa (japonica
cultivar-group)]
Length = 342
Score = 608 bits (1567), Expect = e-173
Identities = 285/344 (82%), Positives = 311/344 (89%), Gaps = 2/344 (0%)
Query: 1 MSTFLSNTNQNPNKSFEVNQPPSDSVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAP 60
M+T N NPNKSFEV P DSVSSL FSPK+NLLVATSWDNQVRCWE+ ++ P
Sbjct: 1 MATLGLAPNMNPNKSFEVLPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGG-SSQP 59
Query: 61 KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPE 120
KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQ TVAMHDAPVK+IAWIP+
Sbjct: 60 KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAQTVAMHDAPVKEIAWIPQ 119
Query: 121 MSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNP 180
M+LLV+GSWD+T++YWDTRQ NPVH QQLPERCYA++V +PLM+VGTADRN++V+NLQNP
Sbjct: 120 MNLLVSGSWDKTLRYWDTRQSNPVHVQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNP 179
Query: 181 QVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGNE 240
Q EFKRI SPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHH+DDSQQ KNFTFKCHREGN+
Sbjct: 180 QTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGND 239
Query: 241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAY 300
I+SVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKA RC PIPCS FN+DGSIFAY
Sbjct: 240 IFSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAY 299
Query: 301 SVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPRIGATGRK 344
+VCYDWS+GAENHNP TAKT+IYLH PQESEVKGKPRI AT RK
Sbjct: 300 AVCYDWSRGAENHNPATAKTSIYLHSPQESEVKGKPRI-ATSRK 342
>ref|NP_917857.1| putative mRNA export protein [Oryza sativa (japonica
cultivar-group)] gi|55296031|dbj|BAD69442.1|
mRNA-associated protein mrnp41-like [Oryza sativa
(japonica cultivar-group)] gi|20161826|dbj|BAB90741.1|
mRNA-associated protein mrnp41-like [Oryza sativa
(japonica cultivar-group)]
Length = 344
Score = 582 bits (1500), Expect = e-165
Identities = 262/330 (79%), Positives = 294/330 (88%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQ 68
N NPNKS EVN P DSVSSL FSPKAN LVATSWDNQVRCWE+ KASISHDQ
Sbjct: 12 NNNPNKSLEVNPAPGDSVSSLSFSPKANHLVATSWDNQVRCWEIQPGGQCQAKASISHDQ 71
Query: 69 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGS 128
PVLCSAWKDDGTTVFSGGCDKQ+KMWPLLSGGQPM ++ H+APVK++AWIP+M+LLV+GS
Sbjct: 72 PVLCSAWKDDGTTVFSGGCDKQIKMWPLLSGGQPMVLSGHEAPVKELAWIPQMNLLVSGS 131
Query: 129 WDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVEFKRII 188
WD+T++YWD RQP P H QQLPERCYA+S+ +PLMVVGTADRN++V+N+QNPQ EFKRI+
Sbjct: 132 WDKTLRYWDVRQPQPAHVQQLPERCYALSLSYPLMVVGTADRNVIVFNMQNPQAEFKRIV 191
Query: 189 SPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLN 248
SPLK QTRCLAAFPDQQGFLVGSIEGRVGVHH+DD QQGKNFTFKCHR+GN+IY+VN+LN
Sbjct: 192 SPLKLQTRCLAAFPDQQGFLVGSIEGRVGVHHVDDGQQGKNFTFKCHRDGNDIYAVNALN 251
Query: 249 FHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSK 308
FHPVHHTFAT+GSDG FNFWDKDSKQRLKA +C PI CS FN DGSIFAY+VCYDWSK
Sbjct: 252 FHPVHHTFATSGSDGGFNFWDKDSKQRLKAFNKCPSPITCSTFNQDGSIFAYAVCYDWSK 311
Query: 309 GAENHNPTTAKTNIYLHLPQESEVKGKPRI 338
GAE HNP+TAKTNI+LH QESEVKGKPR+
Sbjct: 312 GAEKHNPSTAKTNIFLHSVQESEVKGKPRV 341
>gb|AAF14654.1| F23A5.2(form1) [Arabidopsis thaliana]
gi|3122671|sp|Q38942|RA1L_ARATH Hypothetical rae1-like
protein At1g80670 gi|1297188|gb|AAA98915.1| Theoretical
protein with similarity to Swiss-Prot Accession Number
P41838 poly A+ RNA export protein gi|2129676|pir||S71241
probable RNA export protein - Arabidopsis thaliana
Length = 251
Score = 367 bits (943), Expect = e-100
Identities = 181/293 (61%), Positives = 211/293 (71%), Gaps = 47/293 (16%)
Query: 1 MSTF--LSNTNQNPNKSFEVNQPPSDSVSSLCFSPKANLLVATSWDNQVRCWEVARN--- 55
M+TF + N NPNKS+EV P+DS+SSL FSP+A++LVATSWDNQVRCWE++R+
Sbjct: 1 MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGAS 60
Query: 56 VATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDI 115
+A+APKASISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQP+TVAMH+ P+ +
Sbjct: 61 LASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120
Query: 116 AWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVY 175
AWIP M+LL TGSWD+T+KYWDTRQ NPVHTQQLP++CY +SVKHPLMVVGTADRN++V+
Sbjct: 121 AWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVF 180
Query: 176 NLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQGKNFTFKCH 235
NLQNPQ EFKRI SPLKYQTRC+ AFPDQQGFL C
Sbjct: 181 NLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFL----------------------ELACS 218
Query: 236 REGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPC 288
+ + DGAFNFWDKDSKQRLK C + C
Sbjct: 219 LDAYIL--------------------DGAFNFWDKDSKQRLKVFSSCIDFLFC 251
>gb|AAH90109.1| MGC97718 protein [Xenopus tropicalis]
gi|62751859|ref|NP_001015826.1| MGC97718 protein
[Xenopus tropicalis] gi|62858469|ref|NP_001017142.1|
hypothetical protein LOC549896 [Xenopus tropicalis]
Length = 368
Score = 347 bits (891), Expect = 2e-94
Identities = 178/346 (51%), Positives = 225/346 (64%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV PP DS+S L FSP N L+A SW N VRCWEV N T PKA
Sbjct: 25 NHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + W+ P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTVHWVKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+++K+WDTR PNP+ T QLPERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 IMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI +F
Sbjct: 264 GTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACSF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAYS YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYSSSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|XP_417495.1| PREDICTED: similar to RAE1 RNA export 1 homolog [Gallus gallus]
Length = 570
Score = 346 bits (888), Expect = 5e-94
Identities = 183/355 (51%), Positives = 225/355 (62%), Gaps = 24/355 (6%)
Query: 2 STFLSNT--NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNV 56
S F S T N NP K EV PP DS+S L FSP N L+A SW N VRCWEV N
Sbjct: 218 SMFGSTTADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWANDVRCWEVQDNG 277
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
T PKA H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I
Sbjct: 278 QTIPKAQQMHTGPVLDGCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIH 336
Query: 117 WI--PEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILV 174
WI P S ++TGSWD+T+K+WDTR P P+ T QLPERCY V HP+ V TA+R ++V
Sbjct: 337 WIKAPNYSCVMTGSWDKTLKFWDTRSPTPMMTLQLPERCYCADVVHPMAAVATAERGLIV 396
Query: 175 YNLQNPQVEFKRIISPLKYQTRCLAAFPDQ----QGFLVGSIEGRVGVHHLDDSQQGK-N 229
Y L+N EF+RI SPLK+Q RC+A F D+ GF +GSIEGRV +H+++ K N
Sbjct: 397 YQLENQPSEFRRIESPLKHQHRCVAIFKDKVNKPTGFALGSIEGRVAIHYINPPNPAKDN 456
Query: 230 FTFKCHREG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 282
FTFKCHR +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK +
Sbjct: 457 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 516
Query: 283 SQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
QPI FN++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 517 DQPISACCFNHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 567
>gb|AAH65853.1| Similar to RAE1 RNA export 1 homolog [Danio rerio]
Length = 368
Score = 341 bits (874), Expect = 2e-92
Identities = 173/346 (50%), Positives = 224/346 (64%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
+ NP K EV PP DS+S L FSP N L+ SW N VRCWEV N T PKA
Sbjct: 25 SHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A H+ P++ I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHEGPIRTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR PNP+ + Q+PERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 IMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN+++FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEYYNP--QKKN-YIFLRNAAE-ELKPR 365
>gb|AAP12530.1| Rae1/Gle2 [Xenopus laevis] gi|50414519|gb|AAH77196.1| Rae1/Gle2
protein [Xenopus laevis]
Length = 368
Score = 340 bits (871), Expect = 5e-92
Identities = 176/346 (50%), Positives = 222/346 (63%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV PP DS+S L FSP+ N L+A SW N VRCWEV N T PKA
Sbjct: 25 NHNPMKDIEVASPPDDSISCLSFSPQTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PV W DDGT VF+ CDK KMW L S Q + +A HDAP+K + W+ P S
Sbjct: 85 HTGPVQDVCWSDDGTKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTVHWVKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR PNP+ + QLPER Y V +P+ VV TA+R ++VY L+N E
Sbjct: 144 IMTGSWDKTLKFWDTRSPNPLLSIQLPERGYCADVVYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+ F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIDSPLKHQHRCVGIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTAAPQDIYAVNDIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAYS YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYSSSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>gb|AAH49445.1| Similar to RAE1 RNA export 1 homolog [Danio rerio]
gi|41055915|ref|NP_957292.1| RAE1 RNA export 1 homolog
[Danio rerio]
Length = 368
Score = 339 bits (870), Expect = 6e-92
Identities = 172/346 (49%), Positives = 224/346 (64%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
+ NP K EV PP +S+S L FSP N L+ SW N VRCWEV N T PKA
Sbjct: 25 SHNPMKDVEVTSPPDESISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A H+ P++ I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHEGPIRTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR PNP+ + Q+PERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 IMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN+++FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEYYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|XP_638901.1| hypothetical protein DDB0185717 [Dictyostelium discoideum]
gi|60467510|gb|EAL65532.1| hypothetical protein
DDB0185717 [Dictyostelium discoideum]
Length = 342
Score = 339 bits (870), Expect = 6e-92
Identities = 168/336 (50%), Positives = 231/336 (68%), Gaps = 7/336 (2%)
Query: 4 FLSNTNQNPNKSFEVNQPPSDSVSSLCFSPKAN-LLVATSWDNQVRCWEVARNVATA-PK 61
F ++T NPN E++ PPSD VS L FSPKAN +VA SWD +VRCWE+ + ++ PK
Sbjct: 2 FSTSTTTNPNNDIELSSPPSDGVSCLKFSPKANNFIVAGSWDQKVRCWEINPSTKSSMPK 61
Query: 62 ASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEM 121
A ISHD +LC+ W DGT VF+GG D + K W L + Q + VA H AP+K+ WI E
Sbjct: 62 AIISHDAAILCTDWSGDGTKVFTGGVDGKGKCWNLATN-QMVQVAQHTAPIKECFWIEES 120
Query: 122 SLLVTGSWDRTIKYWDTRQPN--PVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQN 179
++LVT SWD+T+KYWDTRQ PV + +L ER YAM + +PL+ V TAD+ I +Y+L+N
Sbjct: 121 NVLVTASWDKTLKYWDTRQQTGTPVLSLELTERIYAMDMLYPLLAVATADKKIYIYDLKN 180
Query: 180 PQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGN 239
PQ +K + S LK+QTRC++ FPD+ GF +GSIEGRV + LDDS+Q +FTFKCHRE +
Sbjct: 181 PQSPYKTVDSLLKFQTRCISCFPDKSGFALGSIEGRVAIQSLDDSKQENSFTFKCHREND 240
Query: 240 EI-YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIF 298
+ Y+VN+++F + TFATAGSDG F+FWDK+SK RLK + Q I + FN D S++
Sbjct: 241 TVAYAVNNISFALPYGTFATAGSDGGFSFWDKESKFRLKQFSKLPQSISTATFNLDASLY 300
Query: 299 AYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKG 334
AY+ YDWSKG++ +P +I++ + + KG
Sbjct: 301 AYASSYDWSKGSQYFDP-NQPNSIFVRVVGDEAKKG 335
>emb|CAI21524.1| RAE1 [Homo sapiens] gi|56204088|emb|CAC21461.2| RAE1 [Homo sapiens]
gi|55725388|emb|CAH89558.1| hypothetical protein [Pongo
pygmaeus] gi|62739173|ref|NP_001015885.1| RAE1 (RNA
export 1, S.pombe) homolog [Homo sapiens]
gi|4506399|ref|NP_003601.1| RAE1 (RNA export 1, S.pombe)
homolog [Homo sapiens] gi|1903456|gb|AAC28126.1| mRNA
export protein [Homo sapiens]
gi|3122666|sp|P78406|RA1L_HUMAN mRNA-associated protein
mrnp 41 (Rae1 protein homolog)
Length = 368
Score = 338 bits (866), Expect = 2e-91
Identities = 176/346 (50%), Positives = 220/346 (62%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>gb|AAR24621.1| migration-inducing gene 14 [Homo sapiens]
Length = 352
Score = 338 bits (866), Expect = 2e-91
Identities = 176/346 (50%), Positives = 220/346 (62%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 9 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 68
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P S
Sbjct: 69 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQTIQIAQHDAPVKTIHWIKAPNYSC 127
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 128 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 187
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 188 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 247
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 248 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 307
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 308 NHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 349
>gb|AAR04856.1| RNA export 1-like protein [Homo sapiens]
Length = 368
Score = 337 bits (865), Expect = 2e-91
Identities = 176/346 (50%), Positives = 220/346 (62%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQVIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|NP_780321.1| RAE1 RNA export 1 homolog [Mus musculus] gi|37590745|gb|AAH59051.1|
RAE1 RNA export 1 homolog [Mus musculus]
gi|26347957|dbj|BAC37627.1| unnamed protein product [Mus
musculus]
Length = 368
Score = 337 bits (864), Expect = 3e-91
Identities = 180/355 (50%), Positives = 224/355 (62%), Gaps = 24/355 (6%)
Query: 2 STFLSNT--NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNV 56
S F S T N NP K EV P DS+ L FSP N L+A SW N VRCWEV +
Sbjct: 16 SMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG 75
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
T PKA H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIH 134
Query: 117 WI--PEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILV 174
WI P S ++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++V
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194
Query: 175 YNLQNPQVEFKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-N 229
Y L+N EF+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K N
Sbjct: 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254
Query: 230 FTFKCHREG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 282
FTFKCHR +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK +
Sbjct: 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314
Query: 283 SQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
QPI FN++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 315 DQPIAACCFNHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|NP_001015585.1| RAE1 RNA export 1 homolog [Bos taurus] gi|59858397|gb|AAX09033.1|
RAE1 (RNA export 1, S.pombe) homolog [Bos taurus]
Length = 368
Score = 337 bits (863), Expect = 4e-91
Identities = 179/355 (50%), Positives = 224/355 (62%), Gaps = 24/355 (6%)
Query: 2 STFLSNT--NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNV 56
S F S T N NP K EV P DS+ L FSP N L+A SW N VRCWEV +
Sbjct: 16 SMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG 75
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
T PKA H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTVH 134
Query: 117 WI--PEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILV 174
WI P S ++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++V
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194
Query: 175 YNLQNPQVEFKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-N 229
Y L+N EF+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K N
Sbjct: 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254
Query: 230 FTFKCHREG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 282
FTFKCHR +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK +
Sbjct: 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314
Query: 283 SQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
QPI FN++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 315 DQPISACCFNHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|XP_342593.1| PREDICTED: similar to RAE1 RNA export 1 homolog [Rattus norvegicus]
Length = 368
Score = 337 bits (863), Expect = 4e-91
Identities = 179/355 (50%), Positives = 224/355 (62%), Gaps = 24/355 (6%)
Query: 2 STFLSNT--NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNV 56
S F S T N NP K EV P DS+ L FSP N L+A SW N VRCWEV +
Sbjct: 16 SMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG 75
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
T PKA H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIH 134
Query: 117 WI--PEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILV 174
WI P S ++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++V
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194
Query: 175 YNLQNPQVEFKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-N 229
Y L+N EF+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K N
Sbjct: 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254
Query: 230 FTFKCHREG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 282
FTFKCHR +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK +
Sbjct: 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314
Query: 283 SQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
QP+ FN++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 315 DQPVAACGFNHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>gb|AAC28127.1| mRNA-associated protein mrnp41 [Homo sapiens]
Length = 368
Score = 335 bits (859), Expect = 1e-90
Identities = 175/346 (50%), Positives = 219/346 (62%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 25 NHNPMKGIEVTSSPDDSIGCLSFSPPTLPGNSLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WD R NP+ QLPERCY V +P+ VV TA+R ++VY L+N E
Sbjct: 144 VMTGSWDKTLKFWDNRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>dbj|BAE01343.1| unnamed protein product [Macaca fascicularis]
Length = 368
Score = 332 bits (852), Expect = 8e-90
Identities = 175/346 (50%), Positives = 218/346 (62%), Gaps = 22/346 (6%)
Query: 9 NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKASIS 65
N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PEMSL 123
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 124 LVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVE 183
++TGSWD+T+K+WDTR NP+ QLPER Y V +P+ VV TA R ++VY L+N E
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGRGLIVYQLENQPSE 203
Query: 184 FKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCHREG 238
F+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCHR
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 239 -------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAF 291
+IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 292 NNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPR 337
N++G+IFAY+ YDWSKG E +NP K N Y+ L +E + KPR
Sbjct: 324 NHNGNIFAYASSYDWSKGHEFYNP--QKKN-YIFLRNAAE-ELKPR 365
>ref|XP_543066.1| PREDICTED: similar to RAE1 RNA export 1 homolog [Canis familiaris]
Length = 807
Score = 330 bits (845), Expect = 5e-89
Identities = 166/322 (51%), Positives = 206/322 (63%), Gaps = 18/322 (5%)
Query: 6 SNTNQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNVATAPKA 62
S N NP K EV P DS+ L FSP N L+A SW N VRCWEV + T PKA
Sbjct: 375 STDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA 434
Query: 63 SISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI--PE 120
H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I WI P
Sbjct: 435 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPN 493
Query: 121 MSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNP 180
S ++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++VY L+N
Sbjct: 494 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQ 553
Query: 181 QVEFKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-NFTFKCH 235
EF+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K NFTFKCH
Sbjct: 554 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 613
Query: 236 REG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPC 288
R +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK + QPI
Sbjct: 614 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 673
Query: 289 SAFNNDGSIFAYSVCYDWSKGA 310
FN++G+IFAY+ YDWSK A
Sbjct: 674 CCFNHNGNIFAYASSYDWSKCA 695
>dbj|BAC29012.1| unnamed protein product [Mus musculus]
Length = 341
Score = 328 bits (842), Expect = 1e-88
Identities = 168/326 (51%), Positives = 208/326 (63%), Gaps = 20/326 (6%)
Query: 2 STFLSNT--NQNPNKSFEVNQPPSDSVSSLCFSPKA---NLLVATSWDNQVRCWEVARNV 56
S F S T N NP K EV P DS+ L FSP N L+A SW N VRCWEV +
Sbjct: 16 SMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG 75
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
T PKA H PVL W DDG+ VF+ CDK KMW L S Q + +A HDAPVK I
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIH 134
Query: 117 WI--PEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILV 174
WI P S ++TGSWD+T+K+WDTR NP+ QLPERCY V +P+ VV TA+R ++V
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194
Query: 175 YNLQNPQVEFKRIISPLKYQTRCLAAFPDQQ----GFLVGSIEGRVGVHHLDDSQQGK-N 229
Y L+N EF+RI SPLK+Q RC+A F D+Q GF +GSIEGRV +H+++ K N
Sbjct: 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254
Query: 230 FTFKCHREG-------NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 282
FTFKCHR +IY+VN + FHPVH T AT GSDG F+FWDKD++ +LK +
Sbjct: 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314
Query: 283 SQPIPCSAFNNDGSIFAYSVCYDWSK 308
QPI FN++G+IFAY+ YDWSK
Sbjct: 315 DQPIAACCFNHNGNIFAYASSYDWSK 340
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,684,043
Number of Sequences: 2540612
Number of extensions: 28531382
Number of successful extensions: 93096
Number of sequences better than 10.0: 4706
Number of HSP's better than 10.0 without gapping: 2129
Number of HSP's successfully gapped in prelim test: 2624
Number of HSP's that attempted gapping in prelim test: 63400
Number of HSP's gapped (non-prelim): 19571
length of query: 344
length of database: 863,360,394
effective HSP length: 129
effective length of query: 215
effective length of database: 535,621,446
effective search space: 115158610890
effective search space used: 115158610890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0314.9