BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0312.5
(204 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_637275.1| actin binding protein [Dictyostelium discoideum... 53 6e-06
sp|O08638|MYH11_MOUSE Myosin heavy chain, smooth muscle isoform ... 51 2e-05
ref|NP_038635.1| myosin, heavy polypeptide 11, smooth muscle [Mu... 51 2e-05
gb|AAH26142.1| Myh11 protein [Mus musculus] 51 2e-05
dbj|BAD32323.1| mKIAA0866 protein [Mus musculus] 51 2e-05
ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501] gi|67855... 50 4e-05
ref|NP_990605.1| MHC [Gallus gallus] gi|63634|emb|CAA29793.1| un... 50 4e-05
sp|P10587|MYH11_CHICK Myosin heavy chain, gizzard smooth muscle 50 4e-05
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Su... 50 4e-05
emb|CAG99270.1| unnamed protein product [Kluyveromyces lactis NR... 49 7e-05
emb|CAE73701.1| Hypothetical protein CBG21212 [Caenorhabditis br... 49 7e-05
pir||A41604 myosin heavy chain, smooth muscle, long splice form ... 49 9e-05
sp|P35748|MYH11_RABIT Myosin heavy chain, smooth muscle isoform ... 49 9e-05
emb|CAI46609.1| Hypothetical protein F45G2.2b [Caenorhabditis el... 49 1e-04
emb|CAB07611.2| Hypothetical protein F45G2.2a [Caenorhabditis el... 49 1e-04
pir||T22235 hypothetical protein F45G2.3 - Caenorhabditis elegans 49 1e-04
gb|EAA72416.1| hypothetical protein FG08719.1 [Gibberella zeae P... 48 1e-04
emb|CAG77705.1| unnamed protein product [Yarrowia lipolytica CLI... 48 1e-04
sp|P35749|MYH11_HUMAN Myosin heavy chain, smooth muscle isoform ... 48 1e-04
gb|AAD13772.1| myosin heavy chain [Rana catesbeiana] 48 1e-04
>ref|XP_637275.1| actin binding protein [Dictyostelium discoideum]
gi|3549261|gb|AAC34582.1| interaptin [Dictyostelium
discoideum] gi|7489885|pir||T14867 interaptin - slime
mold (Dictyostelium discoideum)
gi|60465634|gb|EAL63713.1| actin binding protein
[Dictyostelium discoideum]
Length = 1738
Score = 52.8 bits (125), Expect = 6e-06
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNK-------TNEKKAADLASELNKM 86
L+S F+ + KQL EKD+++ ++ + L++ N+ ++K + +LN++
Sbjct: 1241 LQSIQFENQEKEKQLSEKDEKLQSIQQNLNQLNDENQEKVKQFSEKDEKLQSIQQDLNQL 1300
Query: 87 K---KDFENSLKTKDEEIVN-------LNTEAVQMKSSLESLQAEYSKLSVESSSLKISV 136
K ++ E L KDE++ + LN + ++ L+ + + KL + + +
Sbjct: 1301 KQENQEKEKQLSEKDEKLQSIQQDLNQLNDDQIKKNEKLKEKEEQLLKLQQDFNDQQSQQ 1360
Query: 137 LDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNN 196
L LE ++ + Q+ L E IN + + +L + +++++ +++N N
Sbjct: 1361 LKQLEEKLSEKENQLQQLKQENEINQLNQQQQSNEIIQQL--KDQLLKQQQQEQQENNNE 1418
Query: 197 KEGE 200
KE E
Sbjct: 1419 KEIE 1422
Score = 38.1 bits (87), Expect = 0.15
Identities = 38/192 (19%), Positives = 91/192 (46%), Gaps = 14/192 (7%)
Query: 18 LITKGLEITAISKMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
LI K ++ + + D + N + D+ QLE +K++ +L+ L+ +N++ E
Sbjct: 826 LIEKEKQLQQLQQEFD-QLNEKNQKDHQDQLELLEKQLKQLQQEYDQLNETNQSIE---- 880
Query: 78 DLASELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSK---LSVESSSLKI 134
++LN+ + +L K++E++ L + Q ++ Q E+SK +++E + K
Sbjct: 881 ---NQLNQQNLINKENLNEKEQELLKLQNQLNQQIEKIQFDQQEFSKQNSINIELVNEKN 937
Query: 135 SVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVD---GKLVSPNSAEEEEEKNEE 191
L L+ + + K+Q + + + + + + +L+ N ++ +E++ ++
Sbjct: 938 EKLIQLQQDYDQLKQQNRSNDEKDENDLIEKENQLKSIQNELNQLIEKNESDHKEQQLKQ 997
Query: 192 DNGNNKEGEGEN 203
+ N E EN
Sbjct: 998 QSIENDLIEKEN 1009
Score = 36.6 bits (83), Expect = 0.44
Identities = 21/118 (17%), Positives = 54/118 (44%), Gaps = 3/118 (2%)
Query: 33 DLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFEN 92
DL + + KQL EKD+++ ++ + L++ +K + +L K+++DF +
Sbjct: 1296 DLNQLKQENQEKEKQLSEKDEKLQSIQQDLNQLNDDQIKKNEKLKEKEEQLLKLQQDFND 1355
Query: 93 SLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQ 150
+ +++ L + + ++ L+ L+ E + ++ L+ K ++Q
Sbjct: 1356 Q---QSQQLKQLEEKLSEKENQLQQLKQENEINQLNQQQQSNEIIQQLKDQLLKQQQQ 1410
Score = 36.2 bits (82), Expect = 0.58
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 19/131 (14%)
Query: 19 ITKGLEITAISKMIDLE--SNVFDG-TDNAKQLEEKDKEITKLKATMKLLSN-----SNK 70
+ K +E+ I K+ D+E +N+ D T+ +Q +EK ++ L+ ++ SN SN+
Sbjct: 406 VEKIVEVEKIVKVDDIEKLTNLQDQLTEQQQQYQEKSLKLVNLELELQEKSNQLVDKSNQ 465
Query: 71 TNEKKA--ADLASELNKMKKDFEN----SLKTKDEEIVNLNTEAVQ----MKSSLESLQA 120
+ +A ++L ++ + D + +K KDE I NL E+ + + +LQ+
Sbjct: 466 LSTMQATNSELMEKIGGLMNDLTDIPTQDIKEKDEIIANLKIESEKNLKCFQDDFNALQS 525
Query: 121 EYSKLSVESSS 131
YS L++E +S
Sbjct: 526 RYS-LTIEQTS 535
Score = 35.4 bits (80), Expect = 0.98
Identities = 39/135 (28%), Positives = 59/135 (42%), Gaps = 27/135 (20%)
Query: 30 KMIDLESNVFDG-TDNA---KQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNK 85
K L+S + D T N KQL EKDKEI KL + + ++K +L E
Sbjct: 658 KQTQLQSEIKDNQTINEQLNKQLSEKDKEIEKLS------NQQEQQQDEKINNLLLE--- 708
Query: 86 MKKDFENSLKTKDEEIVNLN---TEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEA 142
+K KD I +N E + + S + L E+ + SS K + L+ L+
Sbjct: 709 --------IKEKDCLIERINQQLLENIDLNSKYQQLLLEFENFKLNSSKEKENQLNELQ- 759
Query: 143 GFAKAKEQISFLNPE 157
+K E+ + LN E
Sbjct: 760 --SKQDERFNQLNDE 772
>sp|O08638|MYH11_MOUSE Myosin heavy chain, smooth muscle isoform (SMMHC)
gi|1945078|dbj|BAA19690.1| myosin [Mus musculus]
Length = 1972
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 19/165 (11%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK+ + + + + KK EL K+K+ E
Sbjct: 1004 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGD 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
E+I +L + ++K L + E L+A A+ E+I+
Sbjct: 1064 ASDFHEQIADLQAQIAELKMQLAKKEEE------------------LQAALARLDEEIAQ 1105
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
N L + + + + L S +A + EK + D G E
Sbjct: 1106 KNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE 1149
Score = 40.4 bits (93), Expect = 0.031
Identities = 33/144 (22%), Positives = 67/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L S +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ +L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L+ E K + ++ L +L
Sbjct: 1294 GMLNEAEGKAIKLAKDVASLGSQL 1317
>ref|NP_038635.1| myosin, heavy polypeptide 11, smooth muscle [Mus musculus]
gi|1945080|dbj|BAA19691.1| myosin [Mus musculus]
Length = 1938
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 19/165 (11%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK+ + + + + KK EL K+K+ E
Sbjct: 1004 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGD 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
E+I +L + ++K L + E L+A A+ E+I+
Sbjct: 1064 ASDFHEQIADLQAQIAELKMQLAKKEEE------------------LQAALARLDEEIAQ 1105
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
N L + + + + L S +A + EK + D G E
Sbjct: 1106 KNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE 1149
Score = 40.4 bits (93), Expect = 0.031
Identities = 33/144 (22%), Positives = 67/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L S +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ +L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L+ E K + ++ L +L
Sbjct: 1294 GMLNEAEGKAIKLAKDVASLGSQL 1317
>gb|AAH26142.1| Myh11 protein [Mus musculus]
Length = 1972
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 19/165 (11%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK+ + + + + KK EL K+K+ E
Sbjct: 1004 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGD 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
E+I +L + ++K L + E L+A A+ E+I+
Sbjct: 1064 ASDFHEQIADLQAQIAELKMQLAKKEEE------------------LQAALARLDEEITQ 1105
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
N L + + + + L S +A + EK + D G E
Sbjct: 1106 KNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE 1149
Score = 40.4 bits (93), Expect = 0.031
Identities = 33/144 (22%), Positives = 67/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L S +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ +L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L+ E K + ++ L +L
Sbjct: 1294 GMLNEAEGKAIKLAKDVASLGSQL 1317
Score = 37.0 bits (84), Expect = 0.34
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 23 LEITAISKMIDLESNVFDGTDNAKQ-LEEKDKEI-TKLK----ATMKLLSNSNKTNEKKA 76
L+ +S + E + ++A+Q LE ++KE+ +KL+ A L ++ E K
Sbjct: 1764 LQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKI 1823
Query: 77 ADLASELNKMKKDFE---NSLKTKDEEIVNL---------------------NTEAVQMK 112
A L ++ + ++ + SLK KD+++ + NT+ Q+K
Sbjct: 1824 AQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLK 1883
Query: 113 SSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIV 172
LE + E +++ L+ + + E+ A +E ++ L +L + S +R
Sbjct: 1884 RQLEEAEEESQRINANRRKLQRELDEATESNEAMGRE-VNALKSKLRRGNEASFVPSRRA 1942
Query: 173 DGKLVSPNSAEEEEEKNEEDNGNN 196
G+ V N+ EEE + D+ N
Sbjct: 1943 GGRRVIENTDGSEEEMDARDSDFN 1966
>dbj|BAD32323.1| mKIAA0866 protein [Mus musculus]
Length = 1984
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 19/165 (11%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK+ + + + + KK EL K+K+ E
Sbjct: 1016 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGD 1075
Query: 94 LKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
E+I +L + ++K L + E L+A A+ E+I+
Sbjct: 1076 ASDFHEQIADLQAQIAELKMQLAKKEEE------------------LQAALARLDEEIAQ 1117
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
N L + + + + L S +A + EK + D G E
Sbjct: 1118 KNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE 1161
Score = 40.4 bits (93), Expect = 0.031
Identities = 33/144 (22%), Positives = 67/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L S +T EK+ A
Sbjct: 1187 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENA 1246
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ +L ++ + + L + KL E S+
Sbjct: 1247 DLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV-T 1305
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L+ E K + ++ L +L
Sbjct: 1306 GMLNEAEGKAIKLAKDVASLGSQL 1329
Score = 37.0 bits (84), Expect = 0.34
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 23 LEITAISKMIDLESNVFDGTDNAKQ-LEEKDKEI-TKLK----ATMKLLSNSNKTNEKKA 76
L+ +S + E + ++A+Q LE ++KE+ +KL+ A L ++ E K
Sbjct: 1776 LQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKI 1835
Query: 77 ADLASELNKMKKDFE---NSLKTKDEEIVNL---------------------NTEAVQMK 112
A L ++ + ++ + SLK KD+++ + NT+ Q+K
Sbjct: 1836 AQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLK 1895
Query: 113 SSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIV 172
LE + E +++ L+ + + E+ A +E ++ L +L + S +R
Sbjct: 1896 RQLEEAEEESQRINANRRKLQRELDEATESNEAMGRE-VNALKSKLRRGNEASFVPSRRA 1954
Query: 173 DGKLVSPNSAEEEEEKNEEDNGNN 196
G+ V N+ EEE + D+ N
Sbjct: 1955 GGRRVIENTDGSEEEMDARDSDFN 1978
>ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501] gi|67855680|gb|EAM50930.1|
BRCT [Crocosphaera watsonii WH 8501]
Length = 490
Score = 50.1 bits (118), Expect = 4e-05
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 25 ITAISKMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKL-LSNSNKTN---EKKAADLA 80
I+++ K ++ S + + K+L+++ K IT+ K +++ LS +T EK+ +
Sbjct: 192 ISSLEKQLETTSQEKNSLE--KELQQQIKTITEEKQSLESSLSKQQETISSLEKQLETTS 249
Query: 81 SELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDH- 139
E N ++K+ + +KT EE +L + + + ++ SL+ + S E +SL+ +
Sbjct: 250 QEKNSLEKELQQQIKTITEEKQSLESSLSKQQETISSLEKQIETTSQEKNSLEKELQQQI 309
Query: 140 ---------LEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEK-N 189
LE+ +K +E IS + + + I + K NS ++EE +
Sbjct: 310 KTITEEKQSLESSLSKQQETIS--QKDNGLEKEVQQQVKTITEEKQSLDNSLTQQEETIS 367
Query: 190 EEDNG-------NNKEGE 200
+EDNG NN++GE
Sbjct: 368 QEDNGLEQKQLTNNEKGE 385
Score = 43.1 bits (100), Expect = 0.005
Identities = 39/214 (18%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 16 QALITKGLEITAISKMIDL--------ESNVFDGTDNAKQLEEKDKEIT----KLKATMK 63
Q +T E+T + + +++ S + + T N L ++ K + +L++++
Sbjct: 127 QLQLTYKKELTQVYQQLEIVKKEQKKTHSQLQEATQNNGSLNQELKIVIAKREELESSLS 186
Query: 64 LLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYS 123
+ + EK+ + E N ++K+ + +KT EE +L + + + ++ SL+ +
Sbjct: 187 KQQETISSLEKQLETTSQEKNSLEKELQQQIKTITEEKQSLESSLSKQQETISSLEKQLE 246
Query: 124 KLSVESSSLKISVLDH----------LEAGFAKAKEQISFLNPELAINFKGSDPYARIVD 173
S E +SL+ + LE+ +K +E IS L ++ + + + +
Sbjct: 247 TTSQEKNSLEKELQQQIKTITEEKQSLESSLSKQQETISSLEKQIETTSQEKNSLEKELQ 306
Query: 174 GKL---------VSPNSAEEEEEKNEEDNGNNKE 198
++ + + ++++E +++DNG KE
Sbjct: 307 QQIKTITEEKQSLESSLSKQQETISQKDNGLEKE 340
>ref|NP_990605.1| MHC [Gallus gallus] gi|63634|emb|CAA29793.1| unnamed protein product
[Gallus gallus]
Length = 1979
Score = 50.1 bits (118), Expect = 4e-05
Identities = 33/101 (32%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK + + + + KK EL K+K+ E
Sbjct: 1010 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1069
Query: 94 LKTKDEEIVNLNTEAVQMKSSL----ESLQAEYSKLSVESS 130
E+I L + ++K+ L E LQA ++L E+S
Sbjct: 1070 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1110
Score = 40.0 bits (92), Expect = 0.040
Identities = 31/144 (21%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + + ++ E+ + + + +EE +++ + K L + +T EK A
Sbjct: 1181 EVTVLKRALEEETRTHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKTKQTLEKDNA 1240
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA+E L++ K+D E+ K + ++ +L ++ + L + KL +E ++
Sbjct: 1241 DLANEIRSLSQAKQDVEHKKKKLEVQLQDLQSKYSDGERVRTELNEKVHKLQIEVENV-T 1299
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
S+L+ E+ K + ++ L +L
Sbjct: 1300 SLLNEAESKNIKLTKDVATLGSQL 1323
Score = 36.6 bits (83), Expect = 0.44
Identities = 40/184 (21%), Positives = 80/184 (42%), Gaps = 16/184 (8%)
Query: 24 EITAISKMIDLESNVFDGT-----DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAAD 78
E A + + LE DG D+ +E+++ ++TK + ++ + TN + +
Sbjct: 967 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1026
Query: 79 LASELNKMKKDFEN-----SLKTKDEEIVNLNTEAVQMKSSLES--LQAEYSKLSVESSS 131
A L K+K E+ ++ K EE E ++ K ES L + ++L + +
Sbjct: 1027 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1086
Query: 132 LKISVL---DHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEK 188
LK + + L+A A+ +++ S N L + + + + L S +A + EK
Sbjct: 1087 LKAQLAKKEEELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEK 1145
Query: 189 NEED 192
+ D
Sbjct: 1146 QKRD 1149
Score = 34.7 bits (78), Expect = 1.7
Identities = 29/139 (20%), Positives = 60/139 (42%), Gaps = 13/139 (9%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE + K++ E + I+ L+ ++ + EK+ DL+ EL +K + E++
Sbjct: 1105 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1164
Query: 94 LKT---------KDEEIVNLNTEAVQMKSSLESLQAEYSK----LSVESSSLKISVLDHL 140
L T K E+ V + A++ ++ Q + + +VE + ++
Sbjct: 1165 LDTTATQQELRAKREQEVTVLKRALEEETRTHEAQVQEMRQKHTQAVEELTEQLEQFKRA 1224
Query: 141 EAGFAKAKEQISFLNPELA 159
+A K K+ + N +LA
Sbjct: 1225 KANLDKTKQTLEKDNADLA 1243
Score = 32.7 bits (73), Expect = 6.4
Identities = 23/90 (25%), Positives = 45/90 (49%), Gaps = 2/90 (2%)
Query: 33 DLESNVFDGTDNAKQLEEKDKEI-TKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFE 91
DL+S DG +L EK ++ +++ LL+ + N K D+A+ L +D +
Sbjct: 1269 DLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVAT-LGSQLQDTQ 1327
Query: 92 NSLKTKDEEIVNLNTEAVQMKSSLESLQAE 121
L+ + + +N+ T+ Q++ SLQ +
Sbjct: 1328 ELLQEETRQKLNVTTKLRQLEDDKNSLQEQ 1357
Score = 32.7 bits (73), Expect = 6.4
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 29 SKMIDLESNVFDGTDNAKQLEEK----DKEITKLKATMKLLSNSNKTNEKKAADLASELN 84
++M DL S+ D N +LE+ ++++ ++K ++ L + + E L +
Sbjct: 1517 AEMEDLVSSKDDVGKNVHELEKSKRTLEQQVEEMKTQLEELEDELQAAEDAKLRLEVNMQ 1576
Query: 85 KMKKDFENSLKTKDEEIVNLNTEAVQM----KSSLESLQAEYSKLSVESSSLKISVLD 138
MK FE L+ +DE+ + ++ ++ LE + + + + L++ V D
Sbjct: 1577 AMKSQFERDLQARDEQNEEKRRQLLKQLHEHETELEDERKQRALAAAAKKKLEVDVKD 1634
>sp|P10587|MYH11_CHICK Myosin heavy chain, gizzard smooth muscle
Length = 1979
Score = 50.1 bits (118), Expect = 4e-05
Identities = 33/101 (32%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK + + + + KK EL K+K+ E
Sbjct: 1010 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1069
Query: 94 LKTKDEEIVNLNTEAVQMKSSL----ESLQAEYSKLSVESS 130
E+I L + ++K+ L E LQA ++L E+S
Sbjct: 1070 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1110
Score = 40.0 bits (92), Expect = 0.040
Identities = 31/144 (21%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + + ++ E+ + + + +EE +++ + K L + +T EK A
Sbjct: 1181 EVTVLKRALEEETRTHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKTKQTLEKDNA 1240
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA+E L++ K+D E+ K + ++ +L ++ + L + KL +E ++
Sbjct: 1241 DLANEIRSLSQAKQDVEHKKKKLEVQLQDLQSKYSDGERVRTELNEKVHKLQIEVENV-T 1299
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
S+L+ E+ K + ++ L +L
Sbjct: 1300 SLLNEAESKNIKLTKDVATLGSQL 1323
Score = 36.6 bits (83), Expect = 0.44
Identities = 40/184 (21%), Positives = 80/184 (42%), Gaps = 16/184 (8%)
Query: 24 EITAISKMIDLESNVFDGT-----DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAAD 78
E A + + LE DG D+ +E+++ ++TK + ++ + TN + +
Sbjct: 967 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1026
Query: 79 LASELNKMKKDFEN-----SLKTKDEEIVNLNTEAVQMKSSLES--LQAEYSKLSVESSS 131
A L K+K E+ ++ K EE E ++ K ES L + ++L + +
Sbjct: 1027 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1086
Query: 132 LKISVL---DHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEK 188
LK + + L+A A+ +++ S N L + + + + L S +A + EK
Sbjct: 1087 LKAQLAKKEEELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEK 1145
Query: 189 NEED 192
+ D
Sbjct: 1146 QKRD 1149
Score = 34.7 bits (78), Expect = 1.7
Identities = 29/139 (20%), Positives = 60/139 (42%), Gaps = 13/139 (9%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE + K++ E + I+ L+ ++ + EK+ DL+ EL +K + E++
Sbjct: 1105 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1164
Query: 94 LKT---------KDEEIVNLNTEAVQMKSSLESLQAEYSK----LSVESSSLKISVLDHL 140
L T K E+ V + A++ ++ Q + + +VE + ++
Sbjct: 1165 LDTTATQQELRAKREQEVTVLKRALEEETRTHEAQVQEMRQKHTQAVEELTEQLEQFKRA 1224
Query: 141 EAGFAKAKEQISFLNPELA 159
+A K K+ + N +LA
Sbjct: 1225 KANLDKTKQTLEKDNADLA 1243
Score = 32.7 bits (73), Expect = 6.4
Identities = 23/90 (25%), Positives = 45/90 (49%), Gaps = 2/90 (2%)
Query: 33 DLESNVFDGTDNAKQLEEKDKEI-TKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFE 91
DL+S DG +L EK ++ +++ LL+ + N K D+A+ L +D +
Sbjct: 1269 DLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVAT-LGSQLQDTQ 1327
Query: 92 NSLKTKDEEIVNLNTEAVQMKSSLESLQAE 121
L+ + + +N+ T+ Q++ SLQ +
Sbjct: 1328 ELLQEETRQKLNVTTKLRQLEDDKNSLQEQ 1357
Score = 32.7 bits (73), Expect = 6.4
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 29 SKMIDLESNVFDGTDNAKQLEEK----DKEITKLKATMKLLSNSNKTNEKKAADLASELN 84
++M DL S+ D N +LE+ ++++ ++K ++ L + + E L +
Sbjct: 1517 AEMEDLVSSKDDVGKNVHELEKSKRTLEQQVEEMKTQLEELEDELQAAEDAKLRLEVNMQ 1576
Query: 85 KMKKDFENSLKTKDEEIVNLNTEAVQM----KSSLESLQAEYSKLSVESSSLKISVLD 138
MK FE L+ +DE+ + ++ ++ LE + + + + L++ V D
Sbjct: 1577 AMKSQFERDLQARDEQNEEKRRQLLKQLHEHETELEDERKQRALAAAAKKKLEVDVKD 1634
>pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment. gi|13786876|pdb|1I84|S Chain S,
Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 50.1 bits (118), Expect = 4e-05
Identities = 33/101 (32%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE V D T N + EEK K +TKLK + + + + KK EL K+K+ E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 94 LKTKDEEIVNLNTEAVQMKSSL----ESLQAEYSKLSVESS 130
E+I L + ++K+ L E LQA ++L E+S
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Score = 36.6 bits (83), Expect = 0.44
Identities = 40/184 (21%), Positives = 80/184 (42%), Gaps = 16/184 (8%)
Query: 24 EITAISKMIDLESNVFDGT-----DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAAD 78
E A + + LE DG D+ +E+++ ++TK + ++ + TN + +
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 79 LASELNKMKKDFEN-----SLKTKDEEIVNLNTEAVQMKSSLES--LQAEYSKLSVESSS 131
A L K+K E+ ++ K EE E ++ K ES L + ++L + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 132 LKISVL---DHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEK 188
LK + + L+A A+ +++ S N L + + + + L S +A + EK
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEK 1144
Query: 189 NEED 192
+ D
Sbjct: 1145 QKRD 1148
>emb|CAG99270.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50308363|ref|XP_454183.1| unnamed protein product
[Kluyveromyces lactis]
Length = 1755
Score = 49.3 bits (116), Expect = 7e-05
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 33/203 (16%)
Query: 15 CQALITKGLEITAISKMIDLESNVFDGTDNAKQLE----EKDKEITKLKATMKLLSNSNK 70
CQ L K + I ESN D K LE EK EI LK+ +SN +
Sbjct: 1118 CQGLQDKISSLNNEIMQISEESN-----DKIKLLEASNEEKVAEIKDLKSE---ISNIKQ 1169
Query: 71 TNEKKAADLASELNKMK---KDFENSLKTKDEEIVNLNTEAVQMKSSLESLQ-------- 119
+ KA L SE++ +K D E+ L+TK++ N T +++ + E LQ
Sbjct: 1170 NADTKAEKLKSEIDALKSRISDLESLLETKNKLYENSQTTITELEQAKEKLQRTIQEQYK 1229
Query: 120 -AEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFKGSD---PYARIVDG- 174
A+YS+ S+ + KI HLE+ K K +S ++ E + K + A I D
Sbjct: 1230 EAQYSEDSLLAGENKIK---HLESQLEKLK--LSSVSKEKEAHLKDEEIKSVKAEIEDNV 1284
Query: 175 KLVSPNSAEEEEEKNEEDNGNNK 197
KLV S E +E K + N+K
Sbjct: 1285 KLVQAKSTELDELKKQNSVLNSK 1307
Score = 40.8 bits (94), Expect = 0.023
Identities = 50/194 (25%), Positives = 86/194 (43%), Gaps = 24/194 (12%)
Query: 28 ISKMIDLESNVFDGTDNAKQLEEKDKE----ITKLKATMKLLSNSNKTNEKKAADLASEL 83
I ++ LE NV ++ +LE K I KL +K L+N+ K E + LA ++
Sbjct: 890 IKRIDTLEKNVTILSNQKIELETKLSNQTSLIPKLTEKLKGLANNYKDLENERDTLAKKI 949
Query: 84 NKMKKDFENSLKTKDEEIVNLNTEAVQMKSSL-----------ESLQAEYSKLSVESSSL 132
+ ++ + ++ + EI +LN E +M+ L E+ A KL+ E++S
Sbjct: 950 LEKEEANKTIMQNLNSEIESLNKEREEMRLDLQYAAEYHQKEKENFDAHTQKLTSENNSK 1009
Query: 133 KISVLDHLEAGFAKAKEQI---SFLNPEL-----AINFKGSDPYARIVDGKLVSPNSAEE 184
S++ L+ + + QI N EL A+N K + + + K + NS E
Sbjct: 1010 SESIIS-LQTKLDECERQIKEYKTTNEELKNSLHALNVKCIELESSLESAKQSTDNSDET 1068
Query: 185 EEEKNEEDNGNNKE 198
EE N+ N E
Sbjct: 1069 IEELNDSVIAINDE 1082
Score = 36.2 bits (82), Expect = 0.58
Identities = 35/130 (26%), Positives = 58/130 (43%), Gaps = 17/130 (13%)
Query: 82 ELNKMKKDFE----------NSLKTKDEE----IVNLNTEAVQMKSSLESLQAEYSKLSV 127
+ NK + D E NSL +K E+ + +L TE V ++ L L +S L V
Sbjct: 702 KFNKTRADLEKSTIENENVINSLNSKLEKLSKSLEHLETEKVNAETELNQLNERHSALEV 761
Query: 128 ESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEE 187
E + KI+ L+ + K +E +A+N + D Y ++G + E E
Sbjct: 762 ELNDTKIA-LESVNNKSQKLEELKQKNTKAIAVNQEQIDKYKEKING--LQQKVKEISES 818
Query: 188 KNEEDNGNNK 197
K + ++G NK
Sbjct: 819 KLKAEDGINK 828
>emb|CAE73701.1| Hypothetical protein CBG21212 [Caenorhabditis briggsae]
Length = 1237
Score = 49.3 bits (116), Expect = 7e-05
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 36/148 (24%)
Query: 48 LEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVN---- 103
L++++KEI +L +K S SN N KKAA+L K +K+++ + E N
Sbjct: 903 LDKRNKEIEELNRNLKAESESNYENAKKAAELEKLREKERKEWDEKERRMQMEAENETNQ 962
Query: 104 LNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFK 163
T+ ++K + S+Q +Y KLS + KA+EQ++
Sbjct: 963 HKTQTEKLKDQIASMQTDYDKLSAQ----------------RKAQEQMN----------- 995
Query: 164 GSDPYARIVDGKLVSPNSAEEEEEKNEE 191
A +VD + N AE EE+ ++
Sbjct: 996 -----AELVDEVALLKNKAERAEEQKKK 1018
>pir||A41604 myosin heavy chain, smooth muscle, long splice form - rabbit
Length = 1972
Score = 48.9 bits (115), Expect = 9e-05
Identities = 31/101 (30%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE + D T N + EEK K +TKLK + + + + KK EL K+K+ +
Sbjct: 1004 LEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKMDGE 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSL----ESLQAEYSKLSVESS 130
E+I +L + ++K L E LQA ++L E+S
Sbjct: 1064 ASDLHEQIADLQAQIAELKMQLAKKEEELQAALARLEDETS 1104
Score = 38.9 bits (89), Expect = 0.089
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L + +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHTQVVEELTEQLEQFKRAKANLDKTKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQELQSKCSDGERARAELNDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L E K ++++ L +L
Sbjct: 1294 GMLSEAEGKAIKLAKEVASLGSQL 1317
Score = 37.4 bits (85), Expect = 0.26
Identities = 41/182 (22%), Positives = 82/182 (44%), Gaps = 12/182 (6%)
Query: 24 EITAISKMIDLESN--VFDGTDNA-----KQLEEKDKEITKLKATMKLLSNSNKTNEKKA 76
++TA +K+ LE + V D +N K LEE+ ++T A + + + + K
Sbjct: 973 KVTAEAKIKKLEDDILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKH 1032
Query: 77 ADLASELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISV 136
+ SEL K E S + ++ ++ EA + + LQA+ ++L ++ + +
Sbjct: 1033 ESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQLAKKE--- 1089
Query: 137 LDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNN 196
+ L+A A+ +++ S N L + + + + L S +A + EK + D G
Sbjct: 1090 -EELQAALARLEDETSQKNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEE 1147
Query: 197 KE 198
E
Sbjct: 1148 LE 1149
>sp|P35748|MYH11_RABIT Myosin heavy chain, smooth muscle isoform (SMMHC)
gi|165490|gb|AAA31395.1| myosin heavy chain
Length = 1972
Score = 48.9 bits (115), Expect = 9e-05
Identities = 31/101 (30%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE + D T N + EEK K +TKLK + + + + KK EL K+K+ +
Sbjct: 1004 LEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKMDGE 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSL----ESLQAEYSKLSVESS 130
E+I +L + ++K L E LQA ++L E+S
Sbjct: 1064 ASDLHEQIADLQAQIAELKMQLAKKEEELQAALARLEDETS 1104
Score = 38.9 bits (89), Expect = 0.089
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + + + +EE +++ + K L + +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHTQVVEELTEQLEQFKRAKANLDKTKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQELQSKCSDGERARAELNDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPEL 158
+L E K ++++ L +L
Sbjct: 1294 GMLSEAEGKAIKLAKEVASLGSQL 1317
Score = 37.4 bits (85), Expect = 0.26
Identities = 41/182 (22%), Positives = 82/182 (44%), Gaps = 12/182 (6%)
Query: 24 EITAISKMIDLESN--VFDGTDNA-----KQLEEKDKEITKLKATMKLLSNSNKTNEKKA 76
++TA +K+ LE + V D +N K LEE+ ++T A + + + + K
Sbjct: 973 KVTAEAKIKKLEDDILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKH 1032
Query: 77 ADLASELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISV 136
+ SEL K E S + ++ ++ EA + + LQA+ ++L ++ + +
Sbjct: 1033 ESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQLAKKE--- 1089
Query: 137 LDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNN 196
+ L+A A+ +++ S N L + + + + L S +A + EK + D G
Sbjct: 1090 -EELQAALARLEDETSQKNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEE 1147
Query: 197 KE 198
E
Sbjct: 1148 LE 1149
>emb|CAI46609.1| Hypothetical protein F45G2.2b [Caenorhabditis elegans]
Length = 390
Score = 48.5 bits (114), Expect = 1e-04
Identities = 42/164 (25%), Positives = 73/164 (43%), Gaps = 25/164 (15%)
Query: 48 LEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVN---- 103
L++++KEI +L +K S SN N KKA++L K KK+++ + E N
Sbjct: 56 LDKRNKEIEELNRNLKAESESNYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQ 115
Query: 104 LNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFK 163
T+ ++K + +LQ ++ K+S + KA+EQ++ + +FK
Sbjct: 116 HKTQTEKLKDQISTLQTDFEKVSAQ----------------RKAQEQMNAELVDEVASFK 159
Query: 164 GSDPYARIVDGKLVS-----PNSAEEEEEKNEEDNGNNKEGEGE 202
A KLV + E+ N E +NK+ EG+
Sbjct: 160 QKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQ 203
>emb|CAB07611.2| Hypothetical protein F45G2.2a [Caenorhabditis elegans]
gi|17553462|ref|NP_499769.1| myosin heavy family member
(3O511) [Caenorhabditis elegans]
Length = 1235
Score = 48.5 bits (114), Expect = 1e-04
Identities = 42/164 (25%), Positives = 73/164 (43%), Gaps = 25/164 (15%)
Query: 48 LEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVN---- 103
L++++KEI +L +K S SN N KKA++L K KK+++ + E N
Sbjct: 901 LDKRNKEIEELNRNLKAESESNYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQ 960
Query: 104 LNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFK 163
T+ ++K + +LQ ++ K+S + KA+EQ++ + +FK
Sbjct: 961 HKTQTEKLKDQISTLQTDFEKVSAQ----------------RKAQEQMNAELVDEVASFK 1004
Query: 164 GSDPYARIVDGKLVS-----PNSAEEEEEKNEEDNGNNKEGEGE 202
A KLV + E+ N E +NK+ EG+
Sbjct: 1005 QKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQ 1048
>pir||T22235 hypothetical protein F45G2.3 - Caenorhabditis elegans
Length = 1287
Score = 48.5 bits (114), Expect = 1e-04
Identities = 42/164 (25%), Positives = 73/164 (43%), Gaps = 25/164 (15%)
Query: 48 LEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVN---- 103
L++++KEI +L +K S SN N KKA++L K KK+++ + E N
Sbjct: 253 LDKRNKEIEELNRNLKAESESNYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQ 312
Query: 104 LNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISFLNPELAINFK 163
T+ ++K + +LQ ++ K+S + KA+EQ++ + +FK
Sbjct: 313 HKTQTEKLKDQISTLQTDFEKVSAQ----------------RKAQEQMNAELVDEVASFK 356
Query: 164 GSDPYARIVDGKLVS-----PNSAEEEEEKNEEDNGNNKEGEGE 202
A KLV + E+ N E +NK+ EG+
Sbjct: 357 QKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQ 400
>gb|EAA72416.1| hypothetical protein FG08719.1 [Gibberella zeae PH-1]
gi|46128683|ref|XP_388895.1| hypothetical protein
FG08719.1 [Gibberella zeae PH-1]
Length = 2398
Score = 48.1 bits (113), Expect = 1e-04
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 29 SKMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKK 88
+K+I+LE ++ + T KQ E ++E+ L+ +K+L + E+KA DL ++L K+ +
Sbjct: 1057 TKIIELEKSITEMTQ--KQAERSEQEVL-LQDEIKMLQSQLAVKERKAQDLENKLVKLDQ 1113
Query: 89 DFE----------NSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLD 138
D E ++K ++ ++ N + Q + L EY L V ++S+L
Sbjct: 1114 DLELKLHIAQRDLQAMKLRETQLSQENDDIQQQLNELSKTATEYEDL-VRQKESELSLLR 1172
Query: 139 HLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGN 195
F ++ + L + + +LV+ S + + E+ ED N
Sbjct: 1173 TDNKNFESERQSLEDQRKSLTAEKEKNAEKYHEAQAELVAMKSRQAQLEREAEDAKN 1229
Score = 35.4 bits (80), Expect = 0.98
Identities = 26/130 (20%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 30 KMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKD 89
K++DLE+ + ++ ++ K I +L++ ++ +T K+ ++++ KD
Sbjct: 2220 KLVDLETKGYSSA--SQDVKFLHKRIQELESQLE----DQETERSKSQRSVRNVDRIVKD 2273
Query: 90 FENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKE 149
+ + KD++ + L+ + +M+ +E L +L S+ ++S E + KE
Sbjct: 2274 MQGQIDRKDKQNMQLSDDVSRMRDKVEKLLKTIEELQSSESNNQLSA-RRAERELREEKE 2332
Query: 150 QISFLNPELA 159
+ + ELA
Sbjct: 2333 RAIRMERELA 2342
>emb|CAG77705.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50554989|ref|XP_504903.1| hypothetical protein
[Yarrowia lipolytica]
Length = 1906
Score = 48.1 bits (113), Expect = 1e-04
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 33 DLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFEN 92
DL S+ D K + KD EI KLK+ ++ ++ + K+ L SEL K D +
Sbjct: 1064 DLASSEKDLASKTKDVSAKDTEIEKLKSELETANSKLASTAKEVEILTSELKAAKSDACD 1123
Query: 93 SLKTKDEEIVNLNTEAVQMKSSLESLQAEYS--KLSVESSSL----KISVLDHLEAGFAK 146
S + +I + +E V+ KS +E L AE + SVES + K+++++ L A
Sbjct: 1124 S----ETKIKAVESELVEQKSKVEHLNAELAAKSSSVESGAAELAEKVALVESLTAKLES 1179
Query: 147 AKEQISFLNPELAINFK 163
++++ EL+ K
Sbjct: 1180 KDKELATKTEELSAKEK 1196
Score = 43.5 bits (101), Expect = 0.004
Identities = 47/183 (25%), Positives = 81/183 (43%), Gaps = 16/183 (8%)
Query: 18 LITKGLEITAISKMID-----LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTN 72
L TK E++A K ++ LE+ + T +K+L K E T A +K L S+
Sbjct: 1184 LATKTEELSAKEKELETKTSELETKTAELTTKSKELTAKSDEATTYSAKVKELETSSAAL 1243
Query: 73 EKKAADLASELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSL 132
EKK L + + + KD K L + K ++ L + S + E+ L
Sbjct: 1244 EKKQTTLKAMADNLTKDLAEKTKELVAAKSELESSNTSSKEEVDVLTKKLSDATAEAVEL 1303
Query: 133 KISVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVD--GKLVSPNSAEEEEEKNE 190
K S +A +A ++S L +L K S+ +D KL+S S +E+ + ++
Sbjct: 1304 KKS----SQAAETEASSKVSALEAKLT---KASESSKAELDKVNKLLS--SFKEKLQTSK 1354
Query: 191 EDN 193
+D+
Sbjct: 1355 DDH 1357
Score = 38.5 bits (88), Expect = 0.12
Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 30 KMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKD 89
K+ +LE ++ +K + + ++++ AT + + K +++ ++ +EL+K+K D
Sbjct: 1008 KVSELEKSLSAAEAQSKSVAAEKEKVSGQIATHE---ETIKRLKEELSERTAELDKLKSD 1064
Query: 90 F---ENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVE----SSSLKISVLD---- 138
E L +K +++ +TE ++KS LE+ ++ + + E +S LK + D
Sbjct: 1065 LASSEKDLASKTKDVSAKDTEIEKLKSELETANSKLASTAKEVEILTSELKAAKSDACDS 1124
Query: 139 -----HLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDN 193
+E+ + K ++ LN ELA + A + K+ S + E +++
Sbjct: 1125 ETKIKAVESELVEQKSKVEHLNAELAAKSSSVESGAAELAEKVALVESLTAKLESKDKEL 1184
Query: 194 GNNKE 198
E
Sbjct: 1185 ATKTE 1189
Score = 36.6 bits (83), Expect = 0.44
Identities = 36/131 (27%), Positives = 54/131 (40%), Gaps = 7/131 (5%)
Query: 21 KGLEITAISKMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLA 80
KGLE LE+ + LEEK +E + K+ L EK+ AD
Sbjct: 1489 KGLEKQVSELTESLETKTSETEAVKTALEEKLEEASSAKSK---LETKVTELEKEVADNQ 1545
Query: 81 SELNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHL 140
+ K + E S+KT EI ++K S E+ A+ S E +S + L
Sbjct: 1546 GKHGKAASELEASVKTLKSEISTHKATIDELKKSAETAAADTSSERTE----LMSKVTEL 1601
Query: 141 EAGFAKAKEQI 151
E A AK+++
Sbjct: 1602 ETQLADAKKEL 1612
Score = 36.6 bits (83), Expect = 0.44
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 24 EITAIS---KMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKA--AD 78
E+TA++ K + + F+ Q E + E K K KL S + + + K+ A+
Sbjct: 886 ELTALAANLKQVTAARSDFENRLKGLQSEHSETETLKDKLIEKLKSAATQLEDHKSRGAN 945
Query: 79 LASELNKMKKDFE------NSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSL 132
L ++ +++ E + L+ E++ ++ + + S L L+ + SK+ ESSS
Sbjct: 946 LEGQIRELQGSHEALQNSYDELQKSHEQLSSVGKDNESLASELAELKTKLSKIETESSS- 1004
Query: 133 KISVLDHLEAGFAKAKEQ 150
+ + LE + A+ Q
Sbjct: 1005 RADKVSELEKSLSAAEAQ 1022
Score = 35.0 bits (79), Expect = 1.3
Identities = 38/132 (28%), Positives = 59/132 (43%), Gaps = 16/132 (12%)
Query: 35 ESNVFDGTDNAKQLEEKDKEI-TKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
E+ D + +L K E+ T+L K L N T+ + ASELN++
Sbjct: 1581 ETAAADTSSERTELMSKVTELETQLADAKKELDNVKSTHADGSKKQASELNEL------- 1633
Query: 94 LKTKDEEIVNLN----TEAVQMKSSLESLQAEYSKLSVE-SSSLKISV--LDHLEAGFAK 146
KTK EE+ N TE + LE QA +KLS + + K+S L+A +
Sbjct: 1634 -KTKLEEVATANTKLETELKNASAKLEEEQAAKTKLSSDLEAKTKVSADFETELKASQTQ 1692
Query: 147 AKEQISFLNPEL 158
E+++ L E+
Sbjct: 1693 HDEEVASLKMEI 1704
Score = 34.7 bits (78), Expect = 1.7
Identities = 29/114 (25%), Positives = 54/114 (46%), Gaps = 12/114 (10%)
Query: 23 LEITAISKMIDLESNVFDGTDNAKQLEEKDKEI----TKLKATMKLLSNSNKTNEKKAAD 78
LE+ +K +L++ + + LE KE+ T+L++ L + E K +
Sbjct: 1728 LEVELKTKETELQTKASNLESASSALEAASKELKSKATELESASSELKSKTSELESKTTE 1787
Query: 79 LASELNKMKKDFENSLKTKDEEIVNLNTEAVQM-------KSSLESLQAEYSKL 125
L + +N KD + LKTK E+ + +TE + + +L LQ++Y +L
Sbjct: 1788 LKT-INTELKDRTSELKTKTTELESKSTELKTVSDTQSATEKALAELQSKYDEL 1840
Score = 33.5 bits (75), Expect = 3.7
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 43 DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASEL-NKMKKDFENSLKTKDEEI 101
D A+ +E+D T+L ++K + N + K A EL NK+ + L+TK +E+
Sbjct: 1388 DLAQAEKERDALRTELDTSIKEMENERTSLTKDADSATKELTNKV-----SMLQTKLDEL 1442
Query: 102 V--------NLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
+ TEA +K +++ QAE L + + S D ++Q+S
Sbjct: 1443 TASHKKALGDSETEAKGLKKEIKAAQAEIKTLEEVKAKYEASQTD-----IKGLEKQVSE 1497
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEE 187
L L ++ ++ KL +SA+ + E
Sbjct: 1498 LTESLETKTSETEAVKTALEEKLEEASSAKSKLE 1531
>sp|P35749|MYH11_HUMAN Myosin heavy chain, smooth muscle isoform (SMMHC)
gi|13124879|ref|NP_002465.1| smooth muscle myosin heavy
chain 11 isoform SM1 [Homo sapiens]
Length = 1972
Score = 48.1 bits (113), Expect = 1e-04
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 34 LESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENS 93
LE + D T N + EEK K +TKLK + + + + KK EL K+K+ E
Sbjct: 1004 LEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGD 1063
Query: 94 LKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQISF 153
E+I +L + ++K L + E L+A A+ ++I+
Sbjct: 1064 ASDFHEQIADLQAQIAELKMQLAKKEEE------------------LQAALARLDDEIAQ 1105
Query: 154 LNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
N L + + + + L S +A + EK + D G E
Sbjct: 1106 KNNALK-KIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE 1149
Score = 42.0 bits (97), Expect = 0.011
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 24 EITAISKMIDLESNVFDGT------DNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAA 77
E+T + K +D E+ + +A+ +EE +++ + K L + +T EK+ A
Sbjct: 1175 EVTVLKKALDEETRSHEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKENA 1234
Query: 78 DLASE---LNKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKI 134
DLA E L + K++ E+ K + ++ L ++ + + L + KL E S+
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESV-T 1293
Query: 135 SVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKL-VSPNSAEEEEEKNEEDN 193
+L+ E K + ++ L+ +L + R KL VS + EEE+N +
Sbjct: 1294 GMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEETR---QKLNVSTKLRQLEEERNSLQD 1350
Query: 194 GNNKEGEGENH 204
++E E + +
Sbjct: 1351 QLDEEMEAKQN 1361
>gb|AAD13772.1| myosin heavy chain [Rana catesbeiana]
Length = 826
Score = 48.1 bits (113), Expect = 1e-04
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 30 KMIDLESNVFDGTDNAKQLEEK-DKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKK 88
K D + + + DN +++++K +KE ++LK + L+++ ++ K A+L ++N++ +
Sbjct: 86 KHADSVAELGEQIDNLQRVKQKLEKEKSELKMEVDDLASNLESVSKSKANL-EKVNRVLE 144
Query: 89 DFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAK 148
D + +K+KD+E + L + K+ L++ E S+ E SL IS L + GF
Sbjct: 145 DQLSEIKSKDDEHLRLLNDLTTQKARLQTETGELSRQLEEKESL-ISQLSRGKQGFT--- 200
Query: 149 EQISFLNPELAINFKGSDPYARIV-----DGKLVSPNSAEEEEEKNE 190
+Q+ L +L K + A + D L+ EE+E K E
Sbjct: 201 QQVEELKRQLEEESKAKNALAHALQSARHDNDLLREQYEEEQEAKAE 247
Score = 34.7 bits (78), Expect = 1.7
Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 24 EITAISKMIDLESNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASEL 83
EI+ +++ I + + A++ E++K + L+A ++ S + E K + EL
Sbjct: 399 EISDLTEQIGETGKSINELEKARKQVEQEK--SDLQAALEEAEGSLEHEEAKILRVQLEL 456
Query: 84 NKMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISV---LDHL 140
N++K + + + KDEE L + + +++S + ++ LK + L+ L
Sbjct: 457 NQIKSEVDRKIAEKDEENEQLKRNSQRAIDTMQSTLDSEIRSRNDALRLKKKMEGDLNEL 516
Query: 141 EAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEE 191
E + A Q S +L N +G ++ D +L ++ +E+ E+
Sbjct: 517 EIQLSHANRQASEAQKQLR-NVQG-----QLKDAQLHLDDALRGQEDLKEQ 561
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.303 0.123 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,887,016
Number of Sequences: 2540612
Number of extensions: 12143049
Number of successful extensions: 110802
Number of sequences better than 10.0: 4405
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 3685
Number of HSP's that attempted gapping in prelim test: 99671
Number of HSP's gapped (non-prelim): 12899
length of query: 204
length of database: 863,360,394
effective HSP length: 122
effective length of query: 82
effective length of database: 553,405,730
effective search space: 45379269860
effective search space used: 45379269860
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0312.5