BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0306.4
(968 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 1097 0.0
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 1072 0.0
gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum] 1061 0.0
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 1059 0.0
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 1054 0.0
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 1054 0.0
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 1054 0.0
ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultiv... 1051 0.0
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 1050 0.0
gb|AAP52558.1| putative polyprotein [Oryza sativa (japonica cult... 1050 0.0
ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cu... 1050 0.0
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 1050 0.0
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 1050 0.0
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu... 1050 0.0
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar... 1049 0.0
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 1049 0.0
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 1048 0.0
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 1048 0.0
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 1047 0.0
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 1046 0.0
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 1097 bits (2837), Expect = 0.0
Identities = 525/856 (61%), Positives = 663/856 (77%), Gaps = 2/856 (0%)
Query: 19 RDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKK 78
R++EFVID+V G PIS APYRMAPAEL EL++QL+DL KGFIRPSVSPWGAPVL VKK
Sbjct: 3 REIEFVIDLVPGTTPISKAPYRMAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVKK 62
Query: 79 KDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDI 138
KDG RLCVDYR+LNK T+KN+YPLPRIDDL DQL+G V+SKIDL+S YHQ+++K ED+
Sbjct: 63 KDGSLRLCVDYRELNKVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDV 122
Query: 139 PKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DTKE 198
KTAFRTRYGHYE+ VMPFG+TNAP FMD MNR+F +LDRFVVVFIDDIL+YS +
Sbjct: 123 SKTAFRTRYGHYEFAVMPFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDAD 182
Query: 199 HEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPK 258
HEEHL VL VLREK+LY KCEFWL EV FLGH+IS GI VDP K+E + W +
Sbjct: 183 HEEHLRIVLQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRLT 242
Query: 259 TVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSP 318
+VTEIRSF+GLAGYYRRF+E FAK+ PLT+LT K F W +AC+ SFQ LK+RLTT+P
Sbjct: 243 SVTEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTAP 302
Query: 319 VLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFS 378
+L LP Y VY DAS GLGCVLMQ KV+AYASRQLK +EKNYPTHDLEL A+VF+
Sbjct: 303 ILTLPVAGAGYVVYSDASLNGLGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVFA 362
Query: 379 LKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVA 438
LK+WRHYLYG +++DHKSLKYLF QKELN+RQRRW+E +KDY+ T+ YHPGKANVVA
Sbjct: 363 LKLWRHYLYGERCEVYTDHKSLKYLFTQKELNLRQRRWLELLKDYDLTILYHPGKANVVA 422
Query: 439 DALSRKM--HVSLKMVKELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLMEEIRERQLQ 496
DALSRK ++++ +V + L+EQ + + L + + ++ + + L++ I+E+Q
Sbjct: 423 DALSRKSMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMRLMTLVVQPTLLDRIKEKQAS 482
Query: 497 DVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHKSKWRIHPGM 556
DV L + + ++ G +F + D ++R + R+CVP + ++ I+ E H++ + IHPG
Sbjct: 483 DVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPYAIHPGG 542
Query: 557 TKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPEWKWDSISMD 616
TKMY+DLKL +WWPG+KK V E+VA CLTCQ+ K EH+ PAG LQSL +P WKW+ I+MD
Sbjct: 543 TKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEKITMD 602
Query: 617 FVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVSTSIVS 676
FV LPR+Q HD+IWVIVDRLTKSAHF+P TT+ E+LA++Y+ EIVRLHGV TSIVS
Sbjct: 603 FVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRLHGVPTSIVS 662
Query: 677 DSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRGSWDD 736
D D +F SHFW +L DALGT+L S+A+HPQ DGQ+ERTIQ+LED+LRACV+D +G W
Sbjct: 663 DRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACVIDFQGGWSQ 722
Query: 737 LQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQQTTEKVKQI 796
P+ EF YNN++ ASI MAP+EALYGRKCR+PL W + GESL +GP++LQ+ KV+
Sbjct: 723 HLPMAEFAYNNSYQASIKMAPFEALYGRKCRSPLHWSEVGESLALGPDVLQEAEVKVRIA 782
Query: 797 REKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTPKFIGPYQIT 856
RE++ +QSRQ+SYAD+RRR LEF+ GDHVFL+V+ T G+ R KL+P+FIGPY+I
Sbjct: 783 RERLLTAQSRQRSYADRRRRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGPYEIL 842
Query: 857 RRVGPVAYQIALPPFL 872
RVGPVAY++ALPP L
Sbjct: 843 ERVGPVAYRLALPPNL 858
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 1072 bits (2773), Expect = 0.0
Identities = 507/656 (77%), Positives = 581/656 (88%), Gaps = 3/656 (0%)
Query: 214 KLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYY 273
+LYAN SKCEFWLE+VNFLGHVI+KEGI VDPAK+E VLAW+QP+TVT+IRS VGLAGYY
Sbjct: 1 QLYANLSKCEFWLEKVNFLGHVITKEGIAVDPAKIEAVLAWKQPQTVTDIRSLVGLAGYY 60
Query: 274 RRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPEEPYEVYC 333
RRFIEGFAKIV PLTQLTRKDQPFAWTE C+ +FQ LK +LTTSPVL+LPQ EEP+EVYC
Sbjct: 61 RRFIEGFAKIVAPLTQLTRKDQPFAWTEKCEENFQLLKRKLTTSPVLVLPQSEEPHEVYC 120
Query: 334 DASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTI 393
DASHQGLGCVLMQH KVVAYASRQLK HE+NYPTHDLEL A+VF+LKIWRHYLYGCTFT+
Sbjct: 121 DASHQGLGCVLMQHKKVVAYASRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGCTFTV 180
Query: 394 FSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSRKMHV--SLKM 451
FSDHKSLKYLFDQKELNMRQRRW+E +KD++FTLQYHPGKANVVADALSR+ SL M
Sbjct: 181 FSDHKSLKYLFDQKELNMRQRRWIETLKDFDFTLQYHPGKANVVADALSRRSVSVSSLIM 240
Query: 452 VKELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLMEEIRERQLQDVFLLEKRNLVIQGK 511
++ EL E FRD+ L V G+LKFGMI+I+SGL+E+I Q DV + EKRNL++QGK
Sbjct: 241 ARQQELWEAFRDLHLNVEFAPGILKFGMIKISSGLLEDIANSQ-DDVLIQEKRNLIVQGK 299
Query: 512 DPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPG 571
EFKIG DN+LRC R+CVP +R+ I++E HKSK IHPG TKMYQDL+ N+WWPG
Sbjct: 300 TTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKSKLSIHPGATKMYQDLRQNYWWPG 359
Query: 572 MKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDSI 631
MKK V EYV+ CLTCQKAKVEHQRPAGMLQ LD+PEWKWDSISMDF+ LP+T++++DSI
Sbjct: 360 MKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKWDSISMDFITGLPKTRRKNDSI 419
Query: 632 WVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALH 691
WVIVDRLTKSAHFLP RTTY V++L EIY+AEIVRLHGV +SIVSD DPKFTSHFWGALH
Sbjct: 420 WVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGVPSSIVSDRDPKFTSHFWGALH 479
Query: 692 DALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHA 751
+ALGTKLRLSSAYHPQ DGQTERT QSLEDLLRACVLD+RGSWD + PLIEFTYNN+FH
Sbjct: 480 EALGTKLRLSSAYHPQTDGQTERTNQSLEDLLRACVLDDRGSWDHVLPLIEFTYNNSFHT 539
Query: 752 SIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQQTTEKVKQIREKMRASQSRQKSYA 811
SIGMAPY+ALYGRKC+TPLCWY+DGE++++GPE++QQTT KVK+I+EKM+ SQ RQKSYA
Sbjct: 540 SIGMAPYQALYGRKCQTPLCWYKDGENMIVGPEMVQQTTAKVKKIKEKMKTSQDRQKSYA 599
Query: 812 DQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTPKFIGPYQITRRVGPVAYQIA 867
D+RRR LEFE+GDHVFLRVT TTGVGRA+KS+KLTPKFIGPYQI R+GPVAY+IA
Sbjct: 600 DKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQIYARIGPVAYRIA 655
>gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1515
Score = 1061 bits (2745), Expect = 0.0
Identities = 508/874 (58%), Positives = 660/874 (75%), Gaps = 9/874 (1%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R+F ++P +PP R+++F ID++ PISI PYRMAPAEL ELK LE KG
Sbjct: 630 VREFPEVFPNDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAPAELKELKDLLE----KG 685
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
FIRPSVSPWGAPVL V+KKDG R+C+DYRQLNK T+KN+YPLPRIDDL DQL+G FS
Sbjct: 686 FIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFS 745
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+RV+ DIPKTAFRTRYGHYE+LVM FG+TNAPA FMD MNR+F +LD
Sbjct: 746 KIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDM 805
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FV++FIDDILIYS + ++H HL VL L++K+LYA SKCEFWL+ V FLGH++S +G
Sbjct: 806 FVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDG 865
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
I VD K+E V W +P + TEIRSF+GLAGYYRRF+EGF+ I PLT+LT+K F W+
Sbjct: 866 IKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWS 925
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
EAC+ SFQ LK+RL T+PVL LP+ + VYCDAS GLGCVLMQ+ KV+AYASRQLK
Sbjct: 926 EACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQLKV 985
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHDLEL +VF+LK+WRHYLYG IF+DHKSL+Y+ QKELN+RQRRW+E +
Sbjct: 986 HEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELL 1045
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ ++ YHPGKANVVAD+LSR S ++E EL + ++ + + G
Sbjct: 1046 KDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGG 1105
Query: 479 MI---RIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNP 535
+ + S LM E++E+Q QD LLE + V + + F+ G D +LR + R+CVP
Sbjct: 1106 IAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVD 1165
Query: 536 ELRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQR 595
L+ +M+E H S++ +HPG TKMY+DL+ +WW GMKK + E+VA C CQ+ KVEHQR
Sbjct: 1166 GLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQR 1225
Query: 596 PAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEK 655
P G+ Q++++PEWKW+ I+MDF+ LPR++++HDSIWVIVDR+TKSAHFLP RTT++ E
Sbjct: 1226 PGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPVRTTHSAED 1285
Query: 656 LAEIYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERT 715
A++Y+ EIVRLHGV SI+SD +FT+ FW + LG+K+ LS+A+HPQ DGQ ERT
Sbjct: 1286 YAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERT 1345
Query: 716 IQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQD 775
IQ+LED+LRACV+D + +WDD PLIEF YNN++H+SI MAPYEALYGR+CR+P+ W++
Sbjct: 1346 IQTLEDMLRACVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEV 1405
Query: 776 GESLLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTG 835
GE+ LIGP+L+ Q EKVK I+E+++ +QSRQKSY D RRR LEFE D V+L+V+ G
Sbjct: 1406 GEARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKG 1465
Query: 836 VGRAIKSRKLTPKFIGPYQITRRVGPVAYQIALP 869
V R K KL+P++IGPY+I +RVG VAY++ LP
Sbjct: 1466 VMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELP 1499
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 1059 bits (2739), Expect = 0.0
Identities = 509/884 (57%), Positives = 664/884 (74%), Gaps = 13/884 (1%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R+F +++P +PP R+++F ID++ PISI PYRMAPAEL ELK LE KG
Sbjct: 636 VREFPEVFPDDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAPAELKELKDLLE----KG 691
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
FIRPSVSPWGAPVL V+KKDG R+C+DYRQLNK T+KN+YPLPRIDDL DQL+G FS
Sbjct: 692 FIRPSVSPWGAPVLFVRKKDGSLRICIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFS 751
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+RV+ DIPKTAFRTRYGHYE+LVM FG+TNAPA FMD MNR+F +LD
Sbjct: 752 KIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDM 811
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FV++FIDDILIYS + ++H HL VL L++K+LYA SKCEFWL+ V FLGH++S +G
Sbjct: 812 FVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDG 871
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
I VD K+E V W +P + TEIRSF+GLAGYYRRF+EGF+ I PLT+LT+K F W+
Sbjct: 872 IKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWS 931
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
EAC+ SFQ LK+RL T+PVL LP+ + VYCDAS GLGCVLMQ+ KV+AYASRQLK
Sbjct: 932 EACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQLKV 991
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHDLEL +VF+LK+WRHYLYG IF+DHKSL+Y+ QK LN+RQRRW+E +
Sbjct: 992 HEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKALNLRQRRWLELL 1051
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ ++ YHPGKANVVAD+LSR S ++E EL + ++ + + G
Sbjct: 1052 KDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGG 1111
Query: 479 MI---RIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNP 535
+ + S LM E++E+Q QD LLE + V + + F+ G D +LR + R+CVP
Sbjct: 1112 IAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVD 1171
Query: 536 ELRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQR 595
L+ +M+E H S++ +HPG TKMY+DL+ +WW GMKK + E+VA C CQ+ KVEHQR
Sbjct: 1172 GLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQR 1231
Query: 596 PAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEK 655
P G+ Q++++PEWKW+ I+MDF+ LPR++++HDSIWVIVDR+TKSAHFLP +TT++ E
Sbjct: 1232 PGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTHSAED 1291
Query: 656 LAEIYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERT 715
A++Y+ EIVRLHGV SI+SD +FT+ FW + LG+K+ LS+A+HPQ DGQ ERT
Sbjct: 1292 YAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERT 1351
Query: 716 IQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQD 775
IQ+LED+LRACV+D + +WDD PLIEF YNN++H+SI MAPYEALYGR+CR+P+ W++
Sbjct: 1352 IQTLEDMLRACVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEV 1411
Query: 776 GESLLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTG 835
GE+ LIGP+L+ Q EKVK I+E+++ +QSRQKSY D RRR LEFE D V+L+V+ G
Sbjct: 1412 GEARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKG 1471
Query: 836 VGRAIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL----PIF 875
V R K KL+P++IGPY+I +RVG VAY++ LP L P+F
Sbjct: 1472 VMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVF 1515
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 1054 bits (2725), Expect = 0.0
Identities = 511/872 (58%), Positives = 643/872 (73%), Gaps = 5/872 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
++D+ E++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 480 VQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKG 539
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN+ T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 540 YIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 599
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R++ EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 600 KIDLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 659
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EH+EHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 660 FVVVFIDDILIYSKTKEEHKEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGG 719
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+VL+W+QPKTV+E+RSF+GLAGYYRRFIE F+KI P+T+L +K+ + WT
Sbjct: 720 VAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWT 779
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK+RL T+PVLILP + ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 780 EDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRP 839
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HE NYPTHDLEL A+V +LKIWRHYLYG +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 840 HENNYPTHDLELAAVVHALKIWRHYLYGNRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 899
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKEL--ELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + ++ + L EL ++F ++LG+ +G +
Sbjct: 900 KDYDMEIHYHPGKANVVADALSRKSYCNMSEGRCLPWELCQEFEKLNLGIVS-KGFV--A 956
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L ++IRE Q+ D ++ E + + +GK F + +R+CVP N EL+
Sbjct: 957 ALEAKPTLFDQIREAQVNDPYIQEIKKNMRRGKAIGFVEDEQGTVWLGERICVPENKELK 1016
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
IM E H++ + IHPG TKMYQDLK FWW M++++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1017 DTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAEHQKPAG 1076
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWV+VDRLTK AHF+P +TTY KLAE
Sbjct: 1077 LLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYTGHKLAE 1136
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A +V LHGV IVSD +FTS FW L LGT+L S+AYHPQ DGQTER Q
Sbjct: 1137 LYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQTERVNQI 1196
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRACVLD GSWD P EF+YNN++ AS+ M+P EALYGRKCRTPL W Q GE
Sbjct: 1197 LEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLWDQTGER 1256
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QS QKSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1257 QVFGTDILREAEEKVKIIQERLRVAQSCQKSYADNRRRDLVFEEGDYVYLRVTPLRGVHR 1316
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPP 870
KL P+F+GP++I R G VAYQ+ LPP
Sbjct: 1317 FQTKGKLAPRFVGPFKIVSRRGEVAYQLELPP 1348
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1461
Score = 1054 bits (2725), Expect = 0.0
Identities = 514/872 (58%), Positives = 641/872 (72%), Gaps = 5/872 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
++D+ E++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 492 VQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKG 551
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN+ T+KN+YPLPRIDDL DQL G VFS
Sbjct: 552 YIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFS 611
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R++ EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 612 KIDLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 671
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 672 FVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGG 731
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+VL+W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + WT
Sbjct: 732 VAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKDVKYKWT 791
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK+RL T+PVLILP + ++VYCDAS GLGCVLMQ KVVAYASRQL
Sbjct: 792 EDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCVLMQEGKVVAYASRQLCP 851
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HE NYPTHDLEL A+V +LKIWRHYL+G I++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 852 HENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTDHKSLKYIFTQPDLNMRQRRWLELI 911
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKEL--ELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + ++ + L EL ++F ++LG+ +G +
Sbjct: 912 KDYDMEIHYHPGKANVVADALSRKSYCNMSEGRCLPWELCQEFERLNLGIVS-KGFV--A 968
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L ++IRE Q+ D + E + + +GK F + +R+CVP N EL+
Sbjct: 969 TLEAKPTLFDQIREAQMNDPDIQEIKKNMRRGKAIGFVEDEQGTVWLGERICVPENKELK 1028
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
IM E H++ + IHPG TKMYQDLKL FWW M++++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1029 NTIMKEAHETLYSIHPGSTKMYQDLKLQFWWASMRREIAEYVALCDVCQRVKAEHQKPAG 1088
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWV+VDRLTK A F+P +TTY KLAE
Sbjct: 1089 LLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAQFIPIKTTYTGHKLAE 1148
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A +V LHGV IVSD +FTS FW L LGT+L S+AYHPQ DGQTER Q
Sbjct: 1149 LYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQTERVNQI 1208
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRACVLD GSWD P EF+YNN++ AS+ M+P EALYGRKCRTPL W Q GE
Sbjct: 1209 LEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLWDQTGER 1268
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EK+K I+E++R +QSRQKSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1269 QVFGTDILREAEEKMKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHR 1328
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPP 870
KL P+F+GP++I R G VAYQ+ LPP
Sbjct: 1329 FQTKGKLAPRFVGPFKIVSRRGEVAYQLELPP 1360
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 1054 bits (2725), Expect = 0.0
Identities = 505/862 (58%), Positives = 641/862 (73%), Gaps = 5/862 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
EE+ R+PP R++EF I++ G PI+ PYRMA EL E+K Q+E+L +KG++RPS SPW
Sbjct: 902 EELTRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPW 961
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPVLLVKKKDG R+ +DYR LN+ T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 962 GAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYH 1021
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+++++EDIPKTAF TRYG YE+ VM FG+TNAPA FM+ MN+IF E+LD+FVVVFIDDI
Sbjct: 1022 QLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDI 1081
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS + +EH EHL ++ LR+ +L+A SKCEFWL+ V FLGHVIS G+ VDP+KVE
Sbjct: 1082 LIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVE 1141
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
VLAW PK V+EIRSF+GLAGYYRRFIEGF+K+ P+T+L +K++ F W+ AC+ SFQ
Sbjct: 1142 AVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSTACEDSFQE 1201
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
+K+RLTT+PVL LP + +E++CDAS QGLGCVLMQ KVVAYASRQL+ HE NYPTHD
Sbjct: 1202 MKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHD 1261
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A++ +LKIWRHYL G +++DHKSLKY+F Q ELNMRQRRW+E IKDY+ + Y
Sbjct: 1262 LELAAVIHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHY 1321
Query: 430 HPGKANVVADALSRKMHVSLKMVK--ELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALSRK + ++ ++ + L + + L V G+ + + L
Sbjct: 1322 HPGKANVVADALSRKAYCNIAQIRPDQDHLCRELEKLRLTVV-QSGVP--ASLTVQPTLE 1378
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+IRE Q D + E + + KD F I + C R+CVP ELR LI+ E H+
Sbjct: 1379 SQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTIWCGPRICVPAKKELRNLILKEAHE 1438
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
S + IHPG TKMYQD+K FWW GMK+ V EYVA C CQ+ K EHQRPAG+LQ L +PE
Sbjct: 1439 SAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPE 1498
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT +DSIWVIVDRLTKSAHF+P +TTY+ +KLAE+Y+ +V
Sbjct: 1499 WKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCR 1558
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
G IVSD +FTS FW LH+ALGT L S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 1559 FGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACA 1618
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD G+WD P EF+YNN++ ASI M+P EA++GR+CRTPLCW + GE+L+ GP++L+
Sbjct: 1619 LDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRRCRTPLCWNEVGEALVFGPDILK 1678
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
E+VK IRE++R +Q+RQK+YAD RRR LEFE+GDHV+LRV+ G+ R S KL P
Sbjct: 1679 SAEEQVKLIRERLRTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAP 1738
Query: 848 KFIGPYQITRRVGPVAYQIALP 869
++IGPY IT R G VAYQ+ LP
Sbjct: 1739 RYIGPYLITARRGEVAYQLELP 1760
>ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultivar-group)]
gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 1051 bits (2719), Expect = 0.0
Identities = 506/862 (58%), Positives = 641/862 (73%), Gaps = 5/862 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
EE+ R+PP R++EF I++ G PI+ PYRMA EL E+K Q+E+L +KG++RPS SPW
Sbjct: 902 EELTRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPW 961
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPVLLVKKKDG R+ +DYR LN+ T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 962 GAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYH 1021
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+++++EDIPKTAF TRYG YE+ VM FG+TNAPA FM+ MN+IF E+LD+FVVVFIDDI
Sbjct: 1022 QLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDI 1081
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS + +EH EHL ++ LR+ +L+A SKCEFWL+ V FLGHVIS G+ VDP+KVE
Sbjct: 1082 LIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISPNGVEVDPSKVE 1141
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
VLAW PK V+EIRSF+GLAGYYRRFIEGF+K+ P+T+L +K++ F W+ AC+ SFQ
Sbjct: 1142 AVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSVACEDSFQE 1201
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
+K+RLTT+PVL LP + +E++CDAS QGLGCVLMQ KVVAYASRQL+ HE NYPTHD
Sbjct: 1202 MKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHD 1261
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A+V +LKIWRHYL G +++DHKSLKY+F Q ELNMRQRRW+E IKDY+ + Y
Sbjct: 1262 LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHY 1321
Query: 430 HPGKANVVADALSRKMHVSLKMVK--ELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALSRK + ++ ++ + L + + L V G+ + + L
Sbjct: 1322 HPGKANVVADALSRKAYCNVAQIRPDQDHLCRELEKLRLTVV-QSGVP--ASLTVQPTLE 1378
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+IRE Q D + E + + KD F I + C R+CVP ELR LI+ E H+
Sbjct: 1379 SQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHE 1438
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
S + IHPG TKMYQD+K FWW GMK+ V EYVA C CQ+ K EHQRPAG+LQ L +PE
Sbjct: 1439 SAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPE 1498
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT +DSIWVIVDRLTKSAHF+P +TTY+ +KLAE+Y+ +V
Sbjct: 1499 WKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCR 1558
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
G IVSD +FTS FW LH+ALGT L S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 1559 FGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACA 1618
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD G+WD P EF+YNN++ ASI M+P EA++GRKCRTPLCW + GE+L+ GP++L+
Sbjct: 1619 LDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWDEVGEALVFGPDILK 1678
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
E+VK IRE+++ +Q+RQK+YAD RRR LEFE+GDHV+LRV+ G+ R S KL P
Sbjct: 1679 SAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAP 1738
Query: 848 KFIGPYQITRRVGPVAYQIALP 869
++IGPY IT R G VAYQ+ LP
Sbjct: 1739 RYIGPYLITARRGEVAYQLELP 1760
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 1050 bits (2716), Expect = 0.0
Identities = 509/874 (58%), Positives = 642/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 746 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 805
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 806 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 865
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 866 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 925
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGH+IS G
Sbjct: 926 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGG 985
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 986 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1045
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 1046 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 1105
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHD+EL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 1106 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQSDLNMRQRRWLELI 1165
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + + ++ LEL ++F ++LG+ G
Sbjct: 1166 KDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV---GRGFVA 1222
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 1223 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLK 1282
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1283 DAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1342
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1343 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1402
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1403 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1462
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1463 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1522
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1523 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1582
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1583 FHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1616
>gb|AAP52558.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531938|ref|NP_920271.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22138474|gb|AAM93458.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1406
Score = 1050 bits (2715), Expect = 0.0
Identities = 510/874 (58%), Positives = 642/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 437 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 496
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 497 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 556
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 557 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 616
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 617 FVVVFIDDILIYSQTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 676
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 677 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 736
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 737 EECERSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 796
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHD+EL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 797 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 856
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + + ++ LEL ++F ++LG+ G
Sbjct: 857 KDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV---GRGFVA 913
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 914 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLK 973
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 974 DAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1033
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1034 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1093
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1094 LYMARIVCLHGVPKKIVSDRGSQFTSNFWEKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1153
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1154 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1213
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1214 QVFGTDILREAEEKVKIIQERLRVAQSRYKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1273
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1274 FQTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1307
>ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1678
Score = 1050 bits (2715), Expect = 0.0
Identities = 510/874 (58%), Positives = 640/874 (72%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 709 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHTRPYRMAANELAEVKRQVDDLLQKG 768
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN YPLPRIDDL DQL+G VFS
Sbjct: 769 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNEYPLPRIDDLFDQLKGATVFS 828
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 829 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 888
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 889 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 948
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 949 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1008
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 1009 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKFGLGCVLMQEGKVVAYASRQLRP 1068
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHD+EL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 1069 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1128
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + + ++ LEL ++F ++LG+ G
Sbjct: 1129 KDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV---GRGFVA 1185
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 1186 ALEAKPTLIDQVREAQINDPDIQEIKKKMRRGKAIGFLEDEHGTVWLGERICVPDNKDLK 1245
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1246 DAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1305
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1306 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1365
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1366 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1425
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1426 LEDMLRACALDFGGSWDKNLPYAEFLYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1485
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1486 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1545
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1546 FHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1579
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 1050 bits (2715), Expect = 0.0
Identities = 504/862 (58%), Positives = 641/862 (73%), Gaps = 5/862 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
EE+ R+PP R++EF I++ G PI+ PYRMA EL E+K Q+E+L +KG++RPS SPW
Sbjct: 623 EELKRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPW 682
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPVLLVKKKDG R+ +DYR LN+ T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 683 GAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYH 742
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+++++EDIPKTAF TRYG YE+ VM FG+TNAPA FM+ MN+IF E+LD+FVVVFID+I
Sbjct: 743 QLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDNI 802
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS + +EH EHL +++ LR+ +L+A SKCEFWL+ V FLGHVIS G+ VDP+KVE
Sbjct: 803 LIYSKNEEEHAEHLRRIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVE 862
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
VLAW PK V+EIRSF+GLAGYYRRFIEGF+K+ P+T+L +K++ F W+ AC+ SFQ
Sbjct: 863 AVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSAACEDSFQE 922
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
LK+RLTT+PVL LP + +E++CDAS QGLGCVLMQ KVVAYASRQL+ HE NYPTHD
Sbjct: 923 LKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQEQKVVAYASRQLRPHEANYPTHD 982
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A+V +LKIWRHYL G +++DHKSLKY+F Q ELNMRQR+W+E IKDY+ + Y
Sbjct: 983 LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRKWLELIKDYDLGIHY 1042
Query: 430 HPGKANVVADALSRKMHVSLKMVK--ELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALS K + ++ ++ + L + + L V G+ + + L
Sbjct: 1043 HPGKANVVADALSHKAYCNVAQIRPDQDHLCRELEKLRLTVV-QSGVP--ASLTVQPTLE 1099
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+IRE Q D + E + + KD F I + C R+CVP ELR LI+ E H+
Sbjct: 1100 SQIREAQKDDEGIKELIKRIQEKKDTNFSIDDKGTVWCGPRICVPAKKELRDLILKEAHE 1159
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
S + IHPG TKMYQD+K FWW GMK+ V EYVA C CQ+ K EHQRPAG+LQ L +PE
Sbjct: 1160 SAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPE 1219
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT +DSIWVIVDRLTKSAHF+P +TTY+ +KLAE+Y+ +V
Sbjct: 1220 WKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCR 1279
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
G IVSD +FTS FW LH+ALGT L S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 1280 FGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACA 1339
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD G+WD P EF+YNN++ ASI M+P EA++GRKCRTPLCW + GE+L+ GP++L+
Sbjct: 1340 LDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWNEVGEALVFGPDILK 1399
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
E+VK IRE+++ +Q+RQK+YAD RRR LEFE+GDHV+LRV+ G+ R S KL P
Sbjct: 1400 SAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAP 1459
Query: 848 KFIGPYQITRRVGPVAYQIALP 869
++IGPY IT R G VAYQ+ LP
Sbjct: 1460 RYIGPYLITARHGEVAYQLELP 1481
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 1050 bits (2715), Expect = 0.0
Identities = 511/874 (58%), Positives = 643/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 504 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 563
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 564 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 623
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 624 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 683
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 684 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 743
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 744 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 803
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 804 EECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 863
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHDLEL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 864 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 923
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + + ++ LEL ++F ++LG+ G +
Sbjct: 924 KDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCQEFERLNLGIVS-RGFV--A 980
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 981 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLK 1040
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
+I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1041 DVILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1100
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1101 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1160
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV HGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1161 LYMARIVCSHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1220
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ ASI MAPYEALYGRKCRTPL W Q GE
Sbjct: 1221 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQTGER 1280
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1281 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHR 1340
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1341 FHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1374
>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 1050 bits (2714), Expect = 0.0
Identities = 509/874 (58%), Positives = 642/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 506 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 565
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 566 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 625
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 626 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 685
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV LGHVIS G
Sbjct: 686 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKLLGHVISAGG 745
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 746 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 805
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 806 EECERSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 865
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHD+EL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 866 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 925
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + ++ ++ LEL ++F ++LG+ G
Sbjct: 926 KDYDMGIHYHPGKANVVADALSRKSYCNVTEGRQLPLELCKEFERLNLGIV---GRGFIA 982
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 983 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLK 1042
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1043 DAILKEAHDTLYSIHPGSTKMYQDLKERFWWVSMKREIAEYVAVCDVCQRVKAEHQKPAG 1102
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1103 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1162
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1163 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1222
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1223 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1282
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1283 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1342
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1343 FQTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1376
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1779
Score = 1049 bits (2713), Expect = 0.0
Identities = 508/874 (58%), Positives = 641/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 810 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 869
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 870 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 929
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 930 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 989
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 990 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 1049
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 1050 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1109
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 1110 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 1169
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHD+EL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 1170 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1229
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVV DALSRK + + ++ LEL ++F ++LG+ G
Sbjct: 1230 KDYDMGIHYHPGKANVVVDALSRKGYCNATEGRQLPLELCKEFERLNLGIV---GRGFVA 1286
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 1287 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLK 1346
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
++ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1347 DAVLKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1406
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1407 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1466
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1467 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1526
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1527 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1586
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1587 QVFGTDILREAEEKVKVIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1646
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1647 FHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1680
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 1049 bits (2712), Expect = 0.0
Identities = 503/862 (58%), Positives = 642/862 (74%), Gaps = 5/862 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
EE+ R+PP R++EF I++ G PI+ PYRMA EL E+K Q+E+L +KG++RPS SPW
Sbjct: 65 EELTRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPW 124
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPVLLVKKKDG R+ +DYR LN+ T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 125 GAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYH 184
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+++++EDIPKTAF TRYG YE+ VM FG+TNAPA FM+ MN+IF E+LD+FVVVFIDDI
Sbjct: 185 QLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDI 244
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS + +EH EHL ++ LR+ +L+A SKCEFWL+ V FLGHVIS G+ VDP+KVE
Sbjct: 245 LIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVE 304
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
VLAW PK V+EIRSF+GLAGYYRRFIEGF+K+ P+T+L +K++ F W+ AC+ SFQ
Sbjct: 305 AVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSTACEDSFQE 364
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
+K+RLTT+PVL LP + +E++CDAS QGLGCVLMQ KVVAYASRQL+ HE NYPTHD
Sbjct: 365 MKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHD 424
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A++ +LKIWRHYL G +++DHKSLKY+F Q ELNMRQRRW+E IKDY+ + Y
Sbjct: 425 LELAAVIHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHY 484
Query: 430 HPGKANVVADALSRKMHVSLKMVK--ELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALSRK + ++ ++ + +L + + L V G+ + + L
Sbjct: 485 HPGKANVVADALSRKAYCNIAQIRPDQGQLCRELEKLRLTVV-QSGVP--ASLTVQPTLE 541
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+IRE Q +D + E + + KD F I + R+CVP ELR LI+ E H+
Sbjct: 542 SQIREAQKEDEGIKELIERIQEKKDTNFSIDDQGTVWYGPRICVPAKKELRDLILKEAHE 601
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
S + IHPG TKMYQD+K FWW GMK+ V EYVA C CQ+ K EHQRPAG+LQ L +PE
Sbjct: 602 SAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPE 661
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT +DSIWVIVDRLTKSAHF+P +TTY+ +KLAE+Y+ +V
Sbjct: 662 WKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCR 721
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
G IVSD +FTS FW LH+ALGT L S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 722 FGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACA 781
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD G+WD P EF+YNN++ ASI M+P EA++GR+CRTPLCW + GE+L+ GP++L+
Sbjct: 782 LDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRRCRTPLCWNEVGEALVFGPDILK 841
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
E+VK IRE+++ +Q+RQK+YAD RRR LEFE+GDHV+LRV+ G+ R S KL P
Sbjct: 842 SAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAP 901
Query: 848 KFIGPYQITRRVGPVAYQIALP 869
++IGPY IT R G VAYQ+ LP
Sbjct: 902 RYIGPYLITARRGEVAYQLELP 923
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 1048 bits (2711), Expect = 0.0
Identities = 504/862 (58%), Positives = 639/862 (73%), Gaps = 5/862 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
EE+ +PP R++EF I++ G PI+ PYRMA EL E+K Q+E+L +KG++RPS SPW
Sbjct: 813 EELTSMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEIKRQIEELESKGYVRPSSSPW 872
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPVLLVKKKDG R+ +DYR LN+ T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 873 GAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYH 932
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+++++EDIPKTAF TRYG YE+ VM FG+TNAPA FM+ MN+IF E+LD+FVVVFIDDI
Sbjct: 933 QLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDI 992
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS + +EH EHL ++ LR+ +L+A SKCEFWL+ V FLGHVIS G+ VDP+KVE
Sbjct: 993 LIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVE 1052
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
VLAW PK V+EIRSF+GLAGYYRRFIEGF+K+ P+T+L +K++ F W+ AC+ SFQ
Sbjct: 1053 AVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSAACEDSFQE 1112
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
+K+RLTT+PVL LP + +E++CDAS QGLGCVLMQ KVVAYASRQL+ HE NYPTHD
Sbjct: 1113 MKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQERKVVAYASRQLRPHEANYPTHD 1172
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A+V +LKIWRHYL G +++DHKSLKY+F Q ELNMRQRRW+E IKDY+ + Y
Sbjct: 1173 LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHY 1232
Query: 430 HPGKANVVADALSRKMHVSLKMVK--ELELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALSRK + ++ ++ + L + + L V G+ + + L
Sbjct: 1233 HPGKANVVADALSRKAYCNVAQIRPDQDHLCRELEKLRLTVV-QSGVP--ASLTVQPTLE 1289
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+IRE Q D + E + + KD F I + C R+CVP ELR LI+ E H+
Sbjct: 1290 SQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHE 1349
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
S + IHPG TKMYQD+K FWW GMK+ V EYVA C CQ+ K EHQRPAG+LQ L +PE
Sbjct: 1350 SAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPE 1409
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT +DSIWVIVDRLTKSAHF+P +TTY+ +KLAE+Y+ +V
Sbjct: 1410 WKWEEIGMDFITGLPRTPNGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCR 1469
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
G IVSD +FTS FW LH+ALGT L S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 1470 FGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACA 1529
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD G+WD P EF+YNN++ ASI M+P A++GRKCRTPLCW + GE+L+ GP++L+
Sbjct: 1530 LDFEGTWDRCLPYAEFSYNNSYQASIQMSPNGAMFGRKCRTPLCWNEVGEALVFGPDILK 1589
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
E+VK IRE+++ +Q+RQK+YAD RRR LEFE+GDHV+LRV+ G+ R S KL P
Sbjct: 1590 SAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAP 1649
Query: 848 KFIGPYQITRRVGPVAYQIALP 869
++IGPY IT R G VAYQ+ LP
Sbjct: 1650 RYIGPYLITARRGEVAYQLELP 1671
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 1048 bits (2709), Expect = 0.0
Identities = 510/874 (58%), Positives = 642/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 474 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 533
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 534 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 593
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 594 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 653
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 654 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 713
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 714 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 773
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 774 EECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 833
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHDLEL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 834 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 893
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + ++ LEL ++F ++LG+ G +
Sbjct: 894 KDYDMGIHYHPGKANVVADALSRKGYCKATEGRQLPLELCKEFERLNLGIVS-RGFV--A 950
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + + +GK F + +R+CVP N +L+
Sbjct: 951 ALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLK 1010
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1011 DAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1070
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK A+F+P +TTY+ +LAE
Sbjct: 1071 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAYFIPVKTTYSGSRLAE 1130
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1131 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1190
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1191 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1250
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1251 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHR 1310
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1311 FHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1344
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 1047 bits (2708), Expect = 0.0
Identities = 510/874 (58%), Positives = 642/874 (73%), Gaps = 5/874 (0%)
Query: 1 IRDFC*CCSEEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKG 60
+R++ +++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG
Sbjct: 504 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 563
Query: 61 FIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFS 120
+IRPS SPWGAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFS
Sbjct: 564 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 623
Query: 121 KIDLKSSYHQIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDR 180
KIDL+S YHQ+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+
Sbjct: 624 KIDLRSGYHQLRIKEEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 683
Query: 181 FVVVFIDDILIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEG 240
FVVVFIDDILIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G
Sbjct: 684 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 743
Query: 241 IVVDPAKVETVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWT 300
+ VDP+ VE+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P+T+L +KD + W+
Sbjct: 744 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 803
Query: 301 EACKTSFQTLKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKT 360
E C+ SFQ LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+
Sbjct: 804 EECEQSFQELKNRLVSAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 863
Query: 361 HEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFI 420
HEKNYPTHDL+L A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E I
Sbjct: 864 HEKNYPTHDLKLAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 923
Query: 421 KDYEFTLQYHPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFG 478
KDY+ + YHPGKANVVADALSRK + + ++ LEL ++F ++LG+ G +
Sbjct: 924 KDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIVS-RGFV--A 980
Query: 479 MIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELR 538
+ L++++RE Q+ D + E + +GK F + +R+CVP N +L+
Sbjct: 981 ALEAKPTLIDQVREAQINDPDIQEIKKNRRRGKAIGFLEDEHGTVWLGERICVPDNKDLK 1040
Query: 539 RLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAG 598
I+ E H + + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG
Sbjct: 1041 DAILKEAHDTLYSIHPGSTKMYQDLKKRFWWASMKREIAEYVAVCDVCQRVKAEHQKPAG 1100
Query: 599 MLQSLDVPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAE 658
+LQ L +PEWKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE
Sbjct: 1101 LLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAE 1160
Query: 659 IYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQS 718
+Y+A IV LHGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q
Sbjct: 1161 LYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQI 1220
Query: 719 LEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGES 778
LED+LRAC LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE
Sbjct: 1221 LEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGER 1280
Query: 779 LLIGPELLQQTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGR 838
+ G ++L++ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R
Sbjct: 1281 QVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHR 1340
Query: 839 AIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
KL P+F+GPY+I R G VAYQ+ LP L
Sbjct: 1341 FQTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSL 1374
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 1046 bits (2706), Expect = 0.0
Identities = 509/865 (58%), Positives = 638/865 (72%), Gaps = 5/865 (0%)
Query: 10 EEVPRLPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPW 69
+++P +PP RD+EF ID+V G PI PYRMA EL E+K Q++DL KG+IRPS SPW
Sbjct: 762 DDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPW 821
Query: 70 GAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYH 129
GAPV+ V+KKD R+CVDYR LN T+KN+YPLPRIDDL DQL+G VFSKIDL+S YH
Sbjct: 822 GAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYH 881
Query: 130 QIRVKTEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDI 189
Q+R+K EDIPKTAF TRYG +E VM FG+TNAPA FM+ MN++F E+LD+FVVVFIDDI
Sbjct: 882 QLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDI 941
Query: 190 LIYS*DTKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVE 249
LIYS +EHEEHL L LRE +LYA SKCEFWL EV FLGHVIS G+ VDP+ VE
Sbjct: 942 LIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVE 1001
Query: 250 TVLAWEQPKTVTEIRSFVGLAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQT 309
+V W+QPKTV+EIRSF+GLAGYYRRFIE F+KI P T+L +KD + W+E C+ SFQ
Sbjct: 1002 SVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPRTRLLQKDVKYKWSEECEQSFQE 1061
Query: 310 LKERLTTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHD 369
LK RL ++P+LILP P++ ++VYCDAS GLGCVLMQ KVVAYASRQL+ HEKNYPTHD
Sbjct: 1062 LKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHD 1121
Query: 370 LELTAIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQY 429
LEL A+V +LKIWRHYL+G +++DHKSLKY+F Q +LNMRQRRW+E IK+Y+ + Y
Sbjct: 1122 LELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKEYDMGIHY 1181
Query: 430 HPGKANVVADALSRKMHVSLKMVKE--LELLEQFRDMSLGVTPYEGMLKFGMIRIASGLM 487
HPGKANVVADALSRK + + ++ LEL ++F ++LG+ G + + L+
Sbjct: 1182 HPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIVS-RGFV--ATLEAKPTLI 1238
Query: 488 EEIRERQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHK 547
+++RE Q+ D + E + + +GK F + +R+CVP N +L+ I+ E H
Sbjct: 1239 DQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHD 1298
Query: 548 SKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQRPAGMLQSLDVPE 607
+ + IHPG TKMYQDLK FWW MK+++ EYVA C CQ+ K EHQ+PAG+LQ L +PE
Sbjct: 1299 TLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPE 1358
Query: 608 WKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRL 667
WKW+ I MDF+ LPRT HDSIWVIVDRLTK AHF+P +TTY+ +LAE+Y+A IV L
Sbjct: 1359 WKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCL 1418
Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
HGV IVSD +FTS+FW L + +G+KL S+AYHPQ DGQTER Q LED+LRAC
Sbjct: 1419 HGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACA 1478
Query: 728 LDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQDGESLLIGPELLQ 787
LD GSWD P EF+YNN++ AS+ MAPYEALYGRKCRTPL W Q GE + G ++L+
Sbjct: 1479 LDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILR 1538
Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
+ EKVK I+E++R +QSR KSYAD RRR L FEEGD+V+LRVT GV R KL P
Sbjct: 1539 EAKEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAP 1598
Query: 848 KFIGPYQITRRVGPVAYQIALPPFL 872
+F+GPY+I R G VAYQ+ LP L
Sbjct: 1599 RFVGPYKIVSRRGEVAYQLELPQSL 1623
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.141 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,616,401,598
Number of Sequences: 2540612
Number of extensions: 67098554
Number of successful extensions: 296510
Number of sequences better than 10.0: 36801
Number of HSP's better than 10.0 without gapping: 2907
Number of HSP's successfully gapped in prelim test: 33894
Number of HSP's that attempted gapping in prelim test: 227633
Number of HSP's gapped (non-prelim): 40955
length of query: 968
length of database: 863,360,394
effective HSP length: 138
effective length of query: 830
effective length of database: 512,755,938
effective search space: 425587428540
effective search space used: 425587428540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0306.4