BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0306.1
(1224 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 1191 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 969 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 950 0.0
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 913 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 910 0.0
gb|AAL76007.1| prpol [Zea mays] 898 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 868 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 867 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 867 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 866 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 865 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 864 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 863 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 862 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 860 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 860 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 855 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 850 0.0
gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cul... 850 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 846 0.0
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 1191 bits (3080), Expect = 0.0
Identities = 596/1241 (48%), Positives = 827/1241 (66%), Gaps = 56/1241 (4%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLPYDGALVGFSGERVFVRGYVELNTVFGEGINAESF 60
DQGSS D++Y + ++K+ + EA++ PY+ +VGFS ERV +G+++L T FG+ +++
Sbjct: 657 DQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTI 716
Query: 61 AIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAWRCYS 120
I++L+V + YN+L+GRPS+N+L AI+ST HL +K+P G + + DQ A CY
Sbjct: 717 NIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYV 776
Query: 121 ESFKQ------YGHMGKRAV-KEGHRVYGVDIDQEG-------VCLDPREGFLEHKMTPE 166
S K Y +R + G +E V LDPR + +M
Sbjct: 777 ASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDLDPRLD--DPRMEAG 834
Query: 167 EETKTVKVGERNLK--VGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLA 224
E+ + + + +++ K +G +L + + L +N DLFAW+A D+PG+ + I H+L+
Sbjct: 835 EDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLS 894
Query: 225 LNPGVKPIAQMKRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRM 284
+ +PIAQ KRK+GEE+ +A + ET+KLI AGFI++ Y TWLANVVMVKK+NGKWRM
Sbjct: 895 VYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRM 954
Query: 285 CTDYTDLNKHCPKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMT 344
C DYTDLNK CPKDSYPLP ID+LVD A+G +LS +DAYSGY+QI+MY D EKTAF T
Sbjct: 955 CVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRT 1014
Query: 345 NQANYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAE 404
+ N+ Y+ MPFGLKNAGATYQRLMD VF +GRN+E+YVDD+VVKS+ H DL E
Sbjct: 1015 DSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKE 1074
Query: 405 AFGEIRKHNMRLNPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQK 464
F +R++ MRLNPEKC+FG++ GKFLGFM+T RGIE NP+KCKAI EM+SP +KE+Q+
Sbjct: 1075 VFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKEIQR 1134
Query: 465 LIGRIAALSRFLPCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIP 524
L+ R+ +LSRF+P + P + L+K F+WTDECEQ FQ LK L+ PP++ +P
Sbjct: 1135 LVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFLASPPVIQKPNA 1194
Query: 525 GTPLSVFISISDNAVSSVLLQECKDELRIIYFVSHALQGAELRYQKIEKAALALIISARK 584
P+ V++++S+ AVSS L+QE K E R +YFVS L AE RYQ +EK A AL+I+AR+
Sbjct: 1195 REPIVVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQMVEKVAFALVITARR 1254
Query: 585 LRPYFQGFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV 644
+R YFQ ++ V+T++P+ ++L KPDLAGRM+ WAVELSEF I ++ +G +K+Q LADF
Sbjct: 1255 MRMYFQNHKVIVRTNYPIMKILTKPDLAGRMIGWAVELSEFHIEYQPRGAIKSQALADFT 1314
Query: 645 NEMSPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYE 704
E++P + W L VDGSS + SGAGVVLEGPG +++EQ++KF+FK SNNQAEYE
Sbjct: 1315 AELTPYL-TERTPRWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQAEYE 1373
Query: 705 AIIAGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQV 764
AIIAG++LAIE+ V + K+DS+LV Q+ G+Y+ ++ L +Y + L+ R +
Sbjct: 1374 AIIAGLHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNRFKEISF 1433
Query: 765 NHVPREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGAAPSDWMDRIK 824
HV RE NTRAD L +LA+ KK G ++S I TL PS+ ++ M T P +WM IK
Sbjct: 1434 QHVRRENNTRADALSRLATLKKKGAHRSAIHVTLAKPSVGTEE-CMATDTQP-NWMTPIK 1491
Query: 825 MCLEADGADLALFSKDQVREASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVHEGV 884
L DG K +A+ Y+L+G+ LYRRG PLL+C+ ++ +M E+HEG+
Sbjct: 1492 QYL-TDGVCDPHLEKTMKLQAARYILIGEDLYRRGYSRPLLKCLGPEQVTYVMTELHEGI 1550
Query: 885 CASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSSAWP 944
C +H G R+++AK+LRAG+YWPTL+ DC Y
Sbjct: 1551 CGTHSGARTMSAKILRAGYYWPTLQGDCTEY----------------------------- 1581
Query: 945 FAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICRFGV 1004
G+DI+GPFTP Q +F+LV +DYFTKWIEAE + ITA V+ F W+ I+CRFG+
Sbjct: 1582 ----GMDIIGPFTPGKGQCKFLLVGIDYFTKWIEAEPLTAITARNVQSFVWKNIVCRFGL 1637
Query: 1005 PATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGDA 1064
P +++DNG QFT R + +F ++ I+ +SVEHPQ+NGQ EAANKVILN +KKRLG +
Sbjct: 1638 PQIIITDNGRQFTDRGLAEFYEKLHIKHITSSVEHPQTNGQAEAANKVILNELKKRLGPS 1697
Query: 1065 KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHEN 1124
KG W +ELL V+WAY TPQSTT ETP+ LTYG +AM+PVEI + + R D + N E+
Sbjct: 1698 KGNWTEELLEVLWAYRCTPQSTTQETPYSLTYGTEAMIPVEIGEPSLRRQTLDLDLNKES 1757
Query: 1125 RLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKG-PDDSKLS 1183
L+ L+L E++ + ++R+ A K R+ RRYN++V PR Q GDLV R ++ D K S
Sbjct: 1758 LLVGLDLINELRDKCKIREEACKIRAARRYNSKVKPRSYQKGDLVWRMRSDARKDGGKFS 1817
Query: 1184 PNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
NWEGP+RI GAY+LE LSG+ PR WNA HL++YY
Sbjct: 1818 SNWEGPFRISNTATGGAYYLEYLSGKSAPRTWNATHLKFYY 1858
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 969 bits (2506), Expect = 0.0
Identities = 531/1247 (42%), Positives = 753/1247 (59%), Gaps = 67/1247 (5%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLPYDGALVGFSGERVFVRGYVELNTVFGEGINAESF 60
D GSS DLI+ D + +T+ + P L GF G+ V G ++L +F G+ A
Sbjct: 635 DTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKL-PIFVGGLIAW-- 691
Query: 61 AIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKA--DQVVAWRC 118
+KF+V+ + YNV++G P ++++ AI ST H VK+P + G+ L+A + R
Sbjct: 692 -VKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFP-THNGIFTLRAPKEAKTPSRS 749
Query: 119 YSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGERN 178
Y ES E R V+ID+ DP R
Sbjct: 750 YEES-------------ELCRTEMVNIDES----DP---------------------TRC 771
Query: 179 LKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMKRK 238
+ VG ++ L LL N FAWS +D+ GIDP H+L ++P KP+ Q +RK
Sbjct: 772 VGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRK 831
Query: 239 MGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCPKD 298
+G E+A+AV E KL+ AG I EVKYP WLAN V+VKK NGKWR+C DYTDLNK CPKD
Sbjct: 832 LGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKD 891
Query: 299 SYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPFGL 358
SYPLP+ID+LV+ SG G+LS MDA+SGY+QI M+ D+EKT+F+T++ YCY+ M FGL
Sbjct: 892 SYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGL 951
Query: 359 KNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRLNP 418
KNAGATYQR ++++ Q+GR +E+Y+DDM+VKS + H L++ F + + M+LNP
Sbjct: 952 KNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNP 1011
Query: 419 EKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFLPC 478
KC+FG+ SG+FLG+++T+RGIE NP + +AILE+ SP + +EVQ+L GRIAAL+RF+
Sbjct: 1012 TKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISR 1071
Query: 479 SGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISDNA 538
S K PF+ L++ F W + E+AF+ LK+ LS PPIL +P G L ++I++SD+A
Sbjct: 1072 STDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHA 1131
Query: 539 VSSVLLQECKDELRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQGFQIKVKT 598
VSSVL++E + E R I++ S +L AE RY IEKAALA++ SARKLRPYFQ I V T
Sbjct: 1132 VSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLT 1191
Query: 599 DFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFVNEM---SPEVKVS- 654
D PLR L P +GRM WAVELSE+ I F + +K+QVLADF+ E+ S E VS
Sbjct: 1192 DQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSG 1251
Query: 655 -EEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAIIAGINLA 713
EW L VDGSS +GSG G+ L P ++EQS + F A+NN AEYE +IAG+ LA
Sbjct: 1252 NRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLA 1311
Query: 714 IEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHVPREENT 773
M + + TDSQL+A Q+ G+Y+AK+ ++ YL Q + K ++ +++ +PR +N
Sbjct: 1312 AGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNA 1371
Query: 774 RADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTG----------AAPSDWMDRI 823
AD L LA T + + E++ PSI+ D V + A P+DW I
Sbjct: 1372 PADALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEI 1431
Query: 824 KMCLEADGADLALFSKDQVR-EASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVHE 882
+ L ++ ++R +A+ Y L+ + L + +L C+ E + IM E HE
Sbjct: 1432 RDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHE 1491
Query: 883 GVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSSA 942
G +H GGR+LA K+ + GFYWPT+ +DC + KCE+CQ +A P E+L + +
Sbjct: 1492 GAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAP 1551
Query: 943 WPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICRF 1002
+PF W +DI+GP PA Q RF+LV DYFTKW+EAES A I A V+ F W+ IICR
Sbjct: 1552 YPFMRWAMDIVGPM-PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRH 1610
Query: 1003 GVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLG 1062
G+P +++DNG+QF S +FC I + ++ +PQ NGQ EA NK IL+G+KKRL
Sbjct: 1611 GLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLD 1670
Query: 1063 DAKGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENH 1122
+ KG WADEL V+W+Y TTP+S T +TPF YG++AM P E+ + R + +N
Sbjct: 1671 EKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPEL 1730
Query: 1123 ENRLI--DLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGPDD- 1179
+R++ L+ EE++ R + + + YN +V RH VGDLVLR+ + +
Sbjct: 1731 NDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEI 1790
Query: 1180 --SKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
KL NWEG Y++ + + G Y L +SG +PR WN+ HL+ YY
Sbjct: 1791 NAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 950 bits (2455), Expect = 0.0
Identities = 507/1235 (41%), Positives = 751/1235 (60%), Gaps = 38/1235 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLPYDGALVGFSGERVFVRGYVELNTVFGEGINAESF 60
D GSSAD+++ DA++K+ + E L L GF G++V G + L VFG+G N
Sbjct: 793 DGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKE 852
Query: 61 AIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAWRCYS 120
I F VV YN ++GR ++N AII ++ +K P +G + + + +Q+ A
Sbjct: 853 EIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGLRGVITV-RGEQLAA----- 906
Query: 121 ESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREG--FLEHKMTPEEETKTVKVGERN 178
++Y G +VK H V D ++G K PE +TK V++ E N
Sbjct: 907 ---RKYELQGTPSVKGVHVV------------DQKQGEYIKIQKPIPEGKTKKVQLDEHN 951
Query: 179 ----LKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQ 234
+ +G NL E + +++ ENM +FAWS +L G+D + I H LA+ G KP Q
Sbjct: 952 PGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQ 1011
Query: 235 MKRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKH 294
R+M ++ QA K E KL+ A IREV +P WLAN V+VKK+NGKWRMC D+TDLNK
Sbjct: 1012 KLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKA 1071
Query: 295 CPKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTM 354
CPKD +PLP ID+LVD +G ++S +DAYSGYHQ+ M DEEKT+F+T YC+ M
Sbjct: 1072 CPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRM 1131
Query: 355 PFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNM 414
PFGLKNAGAT+ RL+ +V Q+GRN+E Y+DD+VVKS++ H DL E F +RK ++
Sbjct: 1132 PFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSV 1191
Query: 415 RLNPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSR 474
+LNPEKC FG+++GK LGF++++RGIE NPDK AI +M+ P + +EVQ+L GR+A+LSR
Sbjct: 1192 KLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSR 1251
Query: 475 FLPCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISI 534
FL S K PFF+ LR F+WT EC+QAF LK+ L + P L+ P G PL ++++
Sbjct: 1252 FLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAA 1311
Query: 535 SDNAVSSVLLQECKDELRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQGFQI 594
+ VS+VL+QE ++ +YFVS ALQG + RY ++EK A+++++RKLR YF I
Sbjct: 1312 TPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDI 1371
Query: 595 KVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFVNEMSP-EVKV 653
+ + +P+ +VL ++AGR+ WA+EL F + + + +K+QVLADFV E +P EV+
Sbjct: 1372 TIPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVAEWTPNEVEQ 1431
Query: 654 SEEAE--WILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAIIAGIN 711
EE + WI+ DG+ G+GA V++ P ++ S++ F ++NN AEYE ++ +
Sbjct: 1432 QEEVKKPWIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLVFPSTNNTAEYEGVLLAMR 1491
Query: 712 LAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHVPREE 771
A + L++KTDS+LVA ++AK+ +AKYL + + K + V + REE
Sbjct: 1492 KARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAKYLEEARLNEKHFLGITVKAITREE 1551
Query: 772 NTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGAAPSDWMDRI-KMCLEAD 830
N AD L K A+T +P N + + PS + +V + DW + I K + A
Sbjct: 1552 NGEADELAKAAATGQPLENS--FFDIITQPSYEKKEVACI--QREGDWREPILKYLVSAQ 1607
Query: 831 GADLALFSKDQVREASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVHEGVCASHVG 890
+ +K + Y ++ QLY+ GV PLL+CVTR+E +++ E+HEG+C +H
Sbjct: 1608 LPEKEEEAKRIQLMSKKYKVVEGQLYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQA 1667
Query: 891 GRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSSAWPFAMWGV 950
S+A+KV+R G YWPT+ D Y K C+ CQ + + +APP+ L + WPF WG+
Sbjct: 1668 PWSVASKVIRQGIYWPTIMKDTEKYIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGI 1727
Query: 951 DILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICRFGVPATLVS 1010
DI+GP A +RFV+VA++YF++WIEAE++A+IT+ V+KF W+ IICRFG+P +V
Sbjct: 1728 DIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVC 1787
Query: 1011 DNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL-GDAKGLWA 1069
DNG QF S +D C + +++ FASV HPQ+NG VE AN I+ IKKRL G AKG W
Sbjct: 1788 DNGKQFESGKFQDMCKGLNLQINFASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWP 1847
Query: 1070 DELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHENRLIDL 1129
++LL+V+WA TT +TG TPFRL YG +AM P E+ + R+ + ++ E R I L
Sbjct: 1848 EDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRMIF--DQKDEEGREITL 1905
Query: 1130 NLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGPDDSKLSPNWEGP 1189
+ +E++ E + A+ + ++ YN +V R ++ GDLVL++ KL WEGP
Sbjct: 1906 EMLDEIRVEALEKMASYTEGTKSYYNQKVKTRPIEEGDLVLKKVLNEVAVGKLESKWEGP 1965
Query: 1190 YRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
+ + + GA+ L L G + WNA L+ +Y
Sbjct: 1966 FIVKKKTETGAFKLAYLDGEELKHTWNAVSLKKFY 2000
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 913 bits (2359), Expect = 0.0
Identities = 492/1240 (39%), Positives = 722/1240 (57%), Gaps = 34/1240 (2%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLPYDGALVGFSGERVFVRGYVELNTVFGEGINAESF 60
D GSSAD+I+ ++++ L+ + L P + L+GF G+++ G V L FG NA +
Sbjct: 655 DSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGKQIHALGKVALPVSFGTTENARTE 714
Query: 61 AIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAWRCYS 120
+ F VV PYN + GR LNK A +L +K P G + +
Sbjct: 715 YVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKIPALHGVITV------------H 762
Query: 121 ESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE---- 176
S K+ ++ K K + VD Q P + + +EETK + + E
Sbjct: 763 GSQKEARNIEKAIYKSFRNINSVDSTQHEASQPPDMPRGKTNLADQEETKCIPLQEAVPD 822
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
+ + + L+ +E L +L +N D+FAWSA DL G+ + I H L ++P ++P Q +
Sbjct: 823 KKVTISATLSREEELELLDVLQKNQDIFAWSAADLQGVSRDIIEHSLDIDPRMRPKKQRQ 882
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
RKM EE+ A KAE +L+DA IREV YP WLANVV+V K NGK RMC D+TDLNK C
Sbjct: 883 RKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACV 942
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KDS+PLP ID VD+A+G SL+D +SGYHQI + DE K +F T YCY MP
Sbjct: 943 KDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCYTRMPE 1002
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGAT+ R+M +V Q+ RN+ YVDD+VV S+ H DL E F +R ++L
Sbjct: 1003 GLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKL 1062
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC FG+ GK LG++I+ GI NPDK KAI+ M P++ KEVQ+L GRIAAL+RF+
Sbjct: 1063 NPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFI 1122
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
S ++ PFF+ LR+ + +W E +AF+ LK ++ +++ P P TPL ++++ S+
Sbjct: 1123 SRSAERSLPFFKVLREGKT-EWGPEQSEAFRQLKNYIATNLLVTVPEPDTPLLLYVAASE 1181
Query: 537 NAVSSVLLQECKDE----LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQGF 592
+AVS VL+ E D R +Y+VS AL GA+L Y +IEK A A++ ++RKL+ YFQ
Sbjct: 1182 HAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYTEIEKIAYAVLCASRKLKHYFQSH 1241
Query: 593 QIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFVNEMSPEVK 652
+IKV T PL +L+ + +GR+ WA ELS+F I + + +K+Q LADF+ + +P K
Sbjct: 1242 EIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDITYVPRTSIKSQALADFMADWTPSNK 1301
Query: 653 VSE---EAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAIIAG 709
E + W L DG+ G+GA VL P G+ ++ +++ +FKA+NN AEYE +I G
Sbjct: 1302 NEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLKLKFAIRLEFKATNNIAEYEGLILG 1361
Query: 710 INLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHVPR 769
+N A LVIKTDSQ+VA Q++ +Y A + +LA+YL + L +R + ++PR
Sbjct: 1362 LNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPELARYLAVVRGLERRFKGFTLQYIPR 1421
Query: 770 EENTRADVLCKLASTKKP---GNNKSVIQETLKSPSINEDDVVMVTGAAPSDWMDRIKMC 826
EN AD L K A+ P G ++ V++T + DW I C
Sbjct: 1422 AENYEADELAKAAANNTPLPEGTFHQIVTTPATETLPKAFRSVLLTES--EDWRQAIADC 1479
Query: 827 LEA-DGADLALFSKDQVREASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVHEGVC 885
L+ D +K A +Y + LY++GV PLL+C+++ E ++ E+H G+C
Sbjct: 1480 LKGKTTVDDEATAKRMEARARNYTSIDGILYKKGVVQPLLKCISQSEGRELLREIHSGMC 1539
Query: 886 ASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSSAWPF 945
SH+G R+L+AK LR GFYWPT D K C+ CQ ++ + P + + ++WP
Sbjct: 1540 GSHIGPRALSAKALRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPL 1599
Query: 946 AMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICRFGVP 1005
WG+D++GP A +F +VA++YFT+WIEA+ + IT+E ++KF+W+ I+CRFGVP
Sbjct: 1600 QRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPLTTITSETIRKFFWQNIVCRFGVP 1659
Query: 1006 ATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGD-A 1064
L DNG QF S ++FC+ +G ++ FASV HP+SNG VE AN+ I + I K L +
Sbjct: 1660 RLLTVDNGKQFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANRTIFSAISKTLLNLR 1719
Query: 1065 KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHEN 1124
KG W +EL VVW++NTT TG TPF+L YG +AM+P EI+ + R E+ E
Sbjct: 1720 KGKWVEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLPEEIKHQSLRSMKQQLAEDEEY 1779
Query: 1125 RLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGPDDSKLSP 1184
L E ++ E +Q ++ + +VV + +Q GDLVLR+K P+ KL P
Sbjct: 1780 CKETL---ESIRLEAVENITRYQQETKNWRDRKVVRKDIQNGDLVLRKKGDHPNAGKLQP 1836
Query: 1185 NWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
WEGPY ++ G+++L++L GR WN +LR +Y
Sbjct: 1837 KWEGPYTAIQAGRSGSFYLKDLEGRTSTHTWNVDNLRRFY 1876
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 910 bits (2352), Expect = 0.0
Identities = 455/1026 (44%), Positives = 656/1026 (63%), Gaps = 12/1026 (1%)
Query: 211 LPGIDPNFICHKLALNPGVKPIAQMKRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLA 270
+ GI P+ H+L + +P+ Q R+ ++ + ++ E +KL++AGFIREV YP WLA
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 271 NVVMVKKSNGKWRMCTDYTDLNKHCPKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQI 330
NVV+V K GKWR+C DYT+LN CPKDS+PLP ID++VD SG GMLS +DA+SGYHQI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 331 RMYAPDEEKTAFMTNQANYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVV 390
M DEEK AF+T YCY+ MPFGLKNAGATYQRLM ++F+ +G ++E+Y+DD+VV
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 391 KSEEMGGHCLDLAEAFGEIRKHNMRLNPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAI 450
KS+ H L L E F +R++ M+LNP KC+FG+ + KFLGFM+++RGIEV+PD+ KA+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 451 LEMQSPTSVKEVQKLIGRIAALSRFLPCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLK 510
+E P + KE+Q+L G++ AL RF+ + PFF +RK WTD C+ A + +K
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 511 ELLSKPPILSRPIPGTPLSVFISISDNAVSSVLLQ-ECKDELRIIYFVSHALQGAELRYQ 569
L +PPILS PIP L +++++S+ A+S+VL + E + IY+VS AL E RY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYYVSRALADVETRYS 360
Query: 570 KIEKAALALIISARKLRPYFQGFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVF 629
K+E +LAL +A+KLRPYFQ + V TD PLR +L KPDL GRM+ WA+ELSEFGI F
Sbjct: 361 KMELISLALRSAAQKLRPYFQAHPVIVLTDQPLRNILHKPDLTGRMLQWAIELSEFGIEF 420
Query: 630 EKKGQVKAQVLADFVNEMSPEVKVSEEAE----WILSVDGSSYLKGSGAGVVLEGPGGVI 685
+ + +K QV+ADFV E S + E + W L VDG+S GSG G++L+ P G
Sbjct: 421 QPRLSMKGQVMADFVLEYSRKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEH 480
Query: 686 IEQSLKFDFKASNNQAEYEAIIAGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQL 745
+EQ+++ F ASNN+AEYEAI++G++LA+ ++V L I +DSQLV ++ +Y+AKD ++
Sbjct: 481 LEQAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARM 540
Query: 746 AKYLTKTQELMKRMDSVQVNHVPREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINE 805
A+YL K + +++ + + R +N RAD L +A++ + +PS++E
Sbjct: 541 ARYLAKVRNTLQQFTEWTIEKIKRADNRRADALAGIAASLSIKEAILLPIHVQTNPSVSE 600
Query: 806 DDVVMVTGAAPSD---WMDRIKMCLEADGADLALFSKDQVR-EASHYVLLGDQLYRRGVG 861
+ T A +D WM+ I + +VR +A+ + L+G LY+R
Sbjct: 601 ISICSTTEAPQADDQEWMNDITEYIRTGTLPGDPKQAHKVRVQAARFTLIGGHLYKRSFT 660
Query: 862 VPLLRCVTRDEADRIMFEVHEGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEK 921
P LRC+ EA ++ E+HEG+ +H GGRSLA + G+YWPT+K + Y K+C+K
Sbjct: 661 GPYLRCLGHSEAQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDK 720
Query: 922 CQIYADLHRAPPEVLSSMSSAWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAES 981
CQ YA + P L S+S WPFA WG+DI+ P A AQ +F+LVA DYF+KW+EAE+
Sbjct: 721 CQRYAPIPHMPSTTLKSISGPWPFAQWGMDIVRPLPTAPAQKKFLLVATDYFSKWVEAEA 780
Query: 982 MAKITAEKVKKFYWRKIICRFGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQ 1041
A + V KF W+ IICRFG+P T+++DNG QF S R+FC+E+ I +++ +PQ
Sbjct: 781 YASTKDKDVTKFVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQ 840
Query: 1042 SNGQVEAANKVILNGIKKRLGDAKGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAM 1101
SNGQ EA NK ++ +KKRL AKG W +EL V+WAY TTP TG TPF L YG+DA+
Sbjct: 841 SNGQAEATNKTLITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAV 900
Query: 1102 VPVEIQDMTFRVAAYDENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPR 1161
+P+EI T A +++ + +L+ +EV+ +R A +QR+ YN +V PR
Sbjct: 901 IPIEIGLPTIWTNAAKQSDANMQLGRNLDWTDEVRESASIRMADYQQRASAHYNRKVRPR 960
Query: 1162 HMQVGDLVLRRKAKGPDD---SKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQ 1218
++ G LVLR+ + + K NWEGPY + + GAYHL++L G + R WN
Sbjct: 961 SLKNGTLVLRKFFENTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVS 1020
Query: 1219 HLRYYY 1224
+L+ YY
Sbjct: 1021 NLKQYY 1026
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 898 bits (2320), Expect = 0.0
Identities = 478/1240 (38%), Positives = 720/1240 (57%), Gaps = 34/1240 (2%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLPYDGALVGFSGERVFVRGYVELNTVFGEGINAESF 60
D GS+AD+I+ A+ ++ E + L GF G ++ G + ++ FG N +
Sbjct: 95 DTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTE 154
Query: 61 AIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAWRCYS 120
+ F +V PYN +IGR +LN AI+ +L +K P +G + I Q A R
Sbjct: 155 QVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQGPIAI-HGSQEAARRA-- 211
Query: 121 ESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTV----KVGE 176
+ +A+ H + G + ++ F K ++ K + + E
Sbjct: 212 ----EGNWTDSKAI---HNIDGAEACEQ-------YKFRREKAASADQPKPMLLCEDIAE 257
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
+ + +G L+ QE L + L N D+FAWSA DL G++ + I H L ++P +P Q
Sbjct: 258 QKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQRL 317
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
RKM ++KA+ + E +L+ AG IREVKYP WLAN VMVKK+NGKWRMC D+TDLNK CP
Sbjct: 318 RKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACP 377
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD +PLP ID LVD A+ ++SL+D YSGYHQI M DE KT+F+T YCY MP
Sbjct: 378 KDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPE 437
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAG ++ R+ +V + Q+GRN+ YVDD++VKS + H DL E F R+ ++L
Sbjct: 438 GLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKL 497
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC FG++ GKFLG +++ +GIE NP K +AIL M+ PT+ K Q+L GR+A+L+RF+
Sbjct: 498 NPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFI 557
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
S + PFF+ L+ VFQW ++AF+ LK+ L L+ P+ G PL ++++ S
Sbjct: 558 SRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTTLTPPMSGAPLLLYVAASH 617
Query: 537 NAVSSVLLQECKD----ELRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQGF 592
+AVS+ L+QE D IYFVS L ++ Y ++EK A+++++RKLR YFQ +
Sbjct: 618 SAVSAALVQEKLDGQVKRQAPIYFVSEVLSLSKKNYTELEKVLYAVLMASRKLRHYFQAY 677
Query: 593 QIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFVNEMSPEVK 652
I V + PL+ +++ + GR+ WA EL+EF I + + +++Q LADF+ + +P +
Sbjct: 678 NIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFIADWTPGAQ 737
Query: 653 VSE----EAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAIIA 708
E W + DGS G+GA VL P V I + K DF +NN AEYEA++
Sbjct: 738 EEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKICYAAKLDFNCTNNIAEYEALVL 797
Query: 709 GINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHVP 768
G+ M + ++KTDSQ+V+ I +AKD +L KYL + + + V ++P
Sbjct: 798 GLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEASFEGFSVKNIP 857
Query: 769 REENTRADVLCKLASTKKPGNNKSVIQETLKSPSIN--EDDVVMVTGAAPSDWMDRIKMC 826
R +N AD+L K A+ P V ET+K+PS+ E V+ ++ DW I
Sbjct: 858 RGQNEHADLLAKSAAQGLP-LPSDVFFETIKAPSVELLERAVLNISPVFSEDWRTEIISY 916
Query: 827 LEADG-ADLALFSKDQVREASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVHEGVC 885
L+ +D ++K A YV++ +LY+ GV PLL+C++R E +M E+H G+C
Sbjct: 917 LQGKFLSDDEAYNKRIEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLC 976
Query: 886 ASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSSAWPF 945
SH+G R L KV R GFYWP +D +KCE CQ A + P + + WP
Sbjct: 977 GSHIGSRPLLGKVFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQPTWPL 1036
Query: 946 AMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICRFGVP 1005
WG+D+LGP PA +R+V+VAV+YF+KWIEA+ +A IT+ V+KF+W+ I+CRFGVP
Sbjct: 1037 QRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVP 1096
Query: 1006 ATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL-GDA 1064
+ DNGTQF S RDFC+++G ++ FASV HP+SNG VE AN +I+ GI K +
Sbjct: 1097 KAITVDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKLIFNQP 1156
Query: 1065 KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHEN 1124
+G W D+L+ VVW++NTT +TG TPF+L +G +A+ P + + + R+ A E+++
Sbjct: 1157 RGKWPDQLIKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAA 1216
Query: 1125 RLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGPDDSKLSP 1184
I+ + E ++ + + + + + +V ++++ G LVLRR A KL
Sbjct: 1217 YSIEKDALEGIRLQAVENINKYQAETVKWRDRKVRLKNIEPGHLVLRRVANPETVGKLQL 1276
Query: 1185 NWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
W+GP+ + G+Y L++++G IPR+WNA LR YY
Sbjct: 1277 KWDGPFLVASSSRPGSYRLKDMNGSDIPRSWNADELRRYY 1316
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 868 bits (2243), Expect = 0.0
Identities = 477/1247 (38%), Positives = 701/1247 (55%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 791 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 847
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 848 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 906
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + V TK K GE
Sbjct: 907 TCDKESCDMAQTREMASAREDIRLAAATASEGEV----------------PATKISKSGE 950
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 951 SEAKTKKIPLDPSDPTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1007
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 1008 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1067
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1068 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1127
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1128 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1187
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1188 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1247
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1248 SRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1307
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1308 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1367
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L ++ GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1368 GHSVTVVTSFPLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1427
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1428 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1487
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1488 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHV 1547
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGAAPS-----DWMDR 822
R N AD L S K+ V E L +P++ D V G + DW +
Sbjct: 1548 LRHNNEAADRLANFGS-KREAAPSDVFVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREP 1606
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YVL +LY++ L RCV+ +E +++ ++H
Sbjct: 1607 LIRFLTSQELPQDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1666
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1667 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1726
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1727 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1785
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1786 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1845
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1846 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1905
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ +R A Q R +N V R VGDLVLR+
Sbjct: 1906 EERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1965
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1966 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2012
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 867 bits (2241), Expect = 0.0
Identities = 476/1248 (38%), Positives = 702/1248 (56%), Gaps = 50/1248 (4%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 788 DGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 844
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 845 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 903
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + E TK K GE
Sbjct: 904 TCDKESCDMAQTREMASAREDIRLAAATASEG----------------EEPATKISKSGE 947
Query: 177 RNLKVG-VNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQM 235
K + L A+ A N D+FAW D+PGI I H L + KPI Q
Sbjct: 948 SEAKTKKIPLDPSDPAKT----ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 1003
Query: 236 KRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHC 295
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK C
Sbjct: 1004 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1063
Query: 296 PKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMP 355
PKD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMP
Sbjct: 1064 PKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1123
Query: 356 FGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMR 415
FGLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+
Sbjct: 1124 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1183
Query: 416 LNPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRF 475
LNPEKC+FG+ SGK +GFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF
Sbjct: 1184 LNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1243
Query: 476 LPCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISIS 535
+ G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1244 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSAT 1303
Query: 536 DNAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYF 589
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YF
Sbjct: 1304 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1363
Query: 590 QGFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NE 646
QG + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1364 QGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTE 1423
Query: 647 MSPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAI 706
+ W + DGS L G+GAGVVL P G + L F AS+N AEYEA+
Sbjct: 1424 CQEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1483
Query: 707 IAGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNH 766
+ G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++H
Sbjct: 1484 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1543
Query: 767 VPREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMD 821
V R N AD L S K+ V E L +P++ D V G +DW +
Sbjct: 1544 VLRHNNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQVAGTHDVAMVETDWRE 1602
Query: 822 RIKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEV 880
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++
Sbjct: 1603 PLIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDI 1662
Query: 881 HEGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMS 940
H G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1663 HSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIP 1722
Query: 941 SAWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIIC 1000
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+
Sbjct: 1723 LSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVH 1781
Query: 1001 RFGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKR 1060
RFGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R
Sbjct: 1782 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1841
Query: 1061 LGDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAY 1116
+ D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1842 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1901
Query: 1117 DENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKG 1176
E E+R+ DL+ EEV+ +R A Q R +N V R VGDLVLR+
Sbjct: 1902 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTT 1961
Query: 1177 PDDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1962 RDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2009
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 867 bits (2240), Expect = 0.0
Identities = 475/1247 (38%), Positives = 703/1247 (56%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 795 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 851
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 852 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 910
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + V TK K GE
Sbjct: 911 TCDKESCDMAQTREMASAREDIRLAAATASEGEV----------------PATKISKSGE 954
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 955 SEAKTKKIPLDPSDPTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1011
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 1012 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1071
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1072 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1131
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ LDL E F IR M+L
Sbjct: 1132 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKL 1191
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1192 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1251
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1252 SRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1311
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1312 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1371
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL + F+ + +K+Q LADFV E
Sbjct: 1372 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDLSFKPRISIKSQALADFVAEWTEC 1431
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ V + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1432 QEDTTVKKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1491
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1492 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHV 1551
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTG-----AAPSDWMDR 822
R +N AD L S K+ V E L +P++ D G +DW +
Sbjct: 1552 LRHDNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQAAGIHDVAMVETDWREP 1610
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1611 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1670
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1671 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1730
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1731 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1790 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1850 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1909
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ +R A Q R +N V R VGDLVLR+
Sbjct: 1910 EERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1969
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN ++LR +Y
Sbjct: 1970 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFY 2016
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 866 bits (2237), Expect = 0.0
Identities = 475/1247 (38%), Positives = 699/1247 (55%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 790 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 846
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 847 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDVKQAV 905
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + + TKT K GE
Sbjct: 906 TCDKESCDMAQTREMASAREDIRLAAATASEGEI----------------PATKTSKSGE 949
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 950 SEAKTKKIPLDPSDPTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1006
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+W MC DYTDLNK CP
Sbjct: 1007 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCP 1066
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1067 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1126
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1127 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1186
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+SP++ K+VQKL G +AALSRF+
Sbjct: 1187 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFV 1246
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K F+W E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1247 SRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1306
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1307 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1366
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1367 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1426
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1427 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1486
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1487 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1546
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMDR 822
R N AD L S K+ V E L SP++ D GA +DW +
Sbjct: 1547 LRHNNEAADRLANFGS-KREAAPSDVFVEHLYSPTVPHKDATQAAGAHDVAMVEADWREP 1605
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YVL +LY++ L RCV+ +E +++ ++H
Sbjct: 1606 LIRFLTSQELPQDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1665
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1666 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1725
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1726 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1784
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1785 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1844
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TT TG++PF L YG +AM+P E++ + R +
Sbjct: 1845 FDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1904
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EE + +R A Q R +N V R VGDLVLR+
Sbjct: 1905 EERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1964
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1965 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2011
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 865 bits (2235), Expect = 0.0
Identities = 475/1247 (38%), Positives = 697/1247 (55%), Gaps = 74/1247 (5%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 795 DGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 851
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G V L++D A
Sbjct: 852 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRG-VLTLRSDIKQAV 910
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES D+ Q RE
Sbjct: 911 TCDKES--------------------CDMAQTREMASAREE------------------- 931
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
+ L A E+ L L N D+FAW D+PGI I H L + KPI Q
Sbjct: 932 ------IRLAATTESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 985
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 986 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1045
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1046 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1105
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ LDL E F IR M+L
Sbjct: 1106 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKL 1165
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1166 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1225
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL+KPP+L+ P P PL +++S +
Sbjct: 1226 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATS 1285
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1286 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1345
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL VL + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1346 GHSVTVVTSFPLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTEC 1405
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ V + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1406 QEDTPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVT-----GAAPSDWMDR 822
R N AD L S K+ V E L SP++ D V +DW +
Sbjct: 1526 LRHNNEAADRLANFGS-KREAAPSDVFVEHLYSPTVPHKDATQVADTHDIAMVEADWREP 1584
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1585 LIRFLTSQELPQYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1644
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1645 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1704
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + +A+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1705 SWPFAVWGLDMVGPFKKAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1763
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL IK R+
Sbjct: 1764 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQRIKARV 1823
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1824 FDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1883
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1884 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1943
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +H+R +Y
Sbjct: 1944 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFY 1990
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 864 bits (2232), Expect = 0.0
Identities = 477/1251 (38%), Positives = 699/1251 (55%), Gaps = 82/1251 (6%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 790 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 846
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 847 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 905
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES D+ Q RE
Sbjct: 906 TCDKES--------------------CDMAQTREMASAREE------------------- 926
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
+ L A E+ L L N D+FAW D+PGI I H L + KPI Q
Sbjct: 927 ------IRLAATTESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 980
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 981 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1040
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1041 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1100
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1101 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1160
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1161 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1220
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL+KPP+L+ P P PL +++S +
Sbjct: 1221 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATS 1280
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1281 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1340
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL VL + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1341 GHSVTVVTSFPLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTEC 1400
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ V + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1401 QEDTPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSI---------NEDDVVMVTGAAPSD 818
R N AD L S K+ V E L +P++ + DVVMV +D
Sbjct: 1521 LRHNNEAADRLANFGS-KREAAPSDVFVEHLYTPTVPHKDTTQDADTHDVVMV----EAD 1575
Query: 819 WMDRIKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIM 877
W + L + +++ R + YV+ +LY++ L RCV+ +E +++
Sbjct: 1576 WREPFIRFLSSQELPQDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEGRQLL 1635
Query: 878 FEVHEGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLS 937
++H G+C +H R++ K R GF+WPT +D + CE CQ +A P + L
Sbjct: 1636 KDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1695
Query: 938 SMSSAWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRK 997
++ +WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+
Sbjct: 1696 TIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-IN 1754
Query: 998 IICRFGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGI 1057
I+ RFGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GI
Sbjct: 1755 IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGI 1814
Query: 1058 KKRLGDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRV 1113
K R+ D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R
Sbjct: 1815 KARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF 1874
Query: 1114 AAYDENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRK 1173
+ E E+R+ DL+ EE + ++ A Q R +N V R VGDLVLR+
Sbjct: 1875 RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1934
Query: 1174 AKGPDDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1935 QTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 863 bits (2230), Expect = 0.0
Identities = 474/1247 (38%), Positives = 702/1247 (56%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 795 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 851
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 852 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 910
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + V TKT K GE
Sbjct: 911 TCDKESCDMAQTREMASAREDIRLAAATASEGEV----------------PATKTSKSGE 954
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + + T+ A N D+FAW D+PGI I H L + KPI Q
Sbjct: 955 SEAKT--KKIPLDPSNPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1011
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 1012 RRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1071
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1072 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1131
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1132 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1191
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1192 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1251
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1252 SRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1311
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1312 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1371
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1372 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1431
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1432 QEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1491
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1492 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1551
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMDR 822
R N AD L S K+ V E L +P++ D V G +DW +
Sbjct: 1552 LRHNNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQVAGTHDVAMVEADWREP 1610
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1611 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1670
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1671 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1730
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ F+ I+ R
Sbjct: 1731 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAPDFF-INIVHR 1789
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNG QFT + +D C + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1790 FGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W ++L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1850 FDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1909
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1910 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1969
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1970 DRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 862 bits (2227), Expect = 0.0
Identities = 475/1247 (38%), Positives = 694/1247 (55%), Gaps = 74/1247 (5%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 790 DGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 846
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++G P+L K A+ ++ +K P +G V L++D A
Sbjct: 847 FRTENISFEVADFETAYHAILGHPALAKFMAVPHYTYMMMKMPGPRG-VLTLRSDIKQAV 905
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES D+ Q RE
Sbjct: 906 TCDKES--------------------CDMAQTREIASAREE------------------- 926
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
+ L A E+ L L N D+FAW D+PGI I H L + KPI Q
Sbjct: 927 ------IRLAATTESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 980
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 981 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1040
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1041 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1100
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1101 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1160
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1161 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1220
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL+KPP+L+ P P PL +++S +
Sbjct: 1221 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATS 1280
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1281 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYFQ 1340
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL VL + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1341 GHSVTVVTSFPLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTEC 1400
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ V + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1401 QEDTPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVT-----GAAPSDWMDR 822
R N AD L S K+ V E L +P++ D +DW +
Sbjct: 1521 LRHNNEAADRLANFGS-KRETAPSDVFVEHLYTPTVPHKDTTQDADTRNIAMVEADWREP 1579
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
L + +++ R + YVL +LY++ L RCV+ +E +++ ++H
Sbjct: 1580 FIRFLTSQELPQDKDEAERISRRSKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIH 1639
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1640 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1699
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1700 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1758
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1759 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1818
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1819 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1878
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1879 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1938
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1939 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 860 bits (2223), Expect = 0.0
Identities = 473/1247 (37%), Positives = 701/1247 (55%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 795 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 851
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 852 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKLPGPRGVLS-LRSDIKQAV 910
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + V TK K GE
Sbjct: 911 TCDKESCDMAQTREMASAREDIRLAAATASEGEV----------------PATKISKSGE 954
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K ++ T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 955 SEAKTKKIPLDPSDSTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 1011
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 1012 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCP 1071
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1072 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1131
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1132 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1191
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1192 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1251
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K F W E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1252 SRLGERGMPFFKLLKKTDDFHWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1311
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E +++ R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1312 QVVSTVLVVEREEDGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1371
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1372 GHLVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1431
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1432 QEDTPAEKVEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1491
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1492 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1551
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMDR 822
R N AD L S K+ V E L +P++ D V G +DW +
Sbjct: 1552 LRHNNKAADRLANFGS-KREVAPSDVFVEHLYAPTVPHKDTTQVAGTHDVAMVEADWREP 1610
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1611 LIRFLTSQELPQDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1670
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1671 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1730
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1731 SWPFAVWGLDMVGPFKKAFGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNG QFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1790 FGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W ++L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1850 FDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1909
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1910 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1969
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G I +WN +HLR +Y
Sbjct: 1970 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRRFY 2016
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 860 bits (2222), Expect = 0.0
Identities = 473/1247 (37%), Positives = 696/1247 (54%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 728 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 784
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 785 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 843
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + + TKT K GE
Sbjct: 844 TCDKESCDMAQTREMASAREDIRLAAATASEGEI----------------PATKTSKSGE 887
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 888 SEAKTKKIPLDPSDPTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 944
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 945 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1004
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1005 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1064
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1065 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1124
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1125 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1184
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL++PPIL+ P P PL +++S +
Sbjct: 1185 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATS 1244
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1245 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1304
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1305 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1364
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1365 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1424
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1425 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1484
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVM-----VTGAAPSDWMDR 822
R N AD L S K+ V E L +P++ D +DW +
Sbjct: 1485 LRHNNEAADRLANFGS-KREMAPSDVFVEHLYTPTVPHKDTTQDADTHDVALVEADWREP 1543
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
L + +++ R + Y + +LY++ L RCV+ +E +++ ++H
Sbjct: 1544 FIRFLTSQELPQDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1603
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1604 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1663
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1664 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1722
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1723 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1782
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1783 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1842
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EE + +R A Q R +N V R VGDLVLR+
Sbjct: 1843 EERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1902
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1903 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1949
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 855 bits (2209), Expect = 0.0
Identities = 472/1247 (37%), Positives = 699/1247 (55%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 534 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 590
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P + + L++D A
Sbjct: 591 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRRVLS-LRSDIKQAV 649
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ V EG TK K GE
Sbjct: 650 TCDKESCDMAQTREMASAREDIRL-AVATASEGEV---------------PATKISKSGE 693
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K ++ T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 694 SEAKTKKIPLDPSDSTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 750
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 751 RRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCP 810
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 811 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPF 870
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+V+K+++ DL E F IR M+L
Sbjct: 871 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKL 930
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 931 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 990
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+ L++PP+L+ P P PL +++S +
Sbjct: 991 SRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATS 1050
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1051 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1110
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1111 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1170
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1171 QEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1230
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1231 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1290
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMDR 822
R N AD L S K+ V E L +P++ D + G +DW +
Sbjct: 1291 LRHNNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREP 1349
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1350 FIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1409
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1410 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1469
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1470 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1528
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNG QFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1529 FGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1588
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1589 FDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1648
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1649 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1708
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1709 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1755
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 850 bits (2197), Expect = 0.0
Identities = 469/1247 (37%), Positives = 697/1247 (55%), Gaps = 48/1247 (3%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 795 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 851
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 852 FRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 910
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + V TK K GE
Sbjct: 911 TCDKESCDMAQTREMASAREDIRLAAATASEGEV----------------PATKISKSGE 954
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K ++ T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 955 SEAKTKKIPLDPSDSTKT---ANNKDIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRL 1011
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLN CP
Sbjct: 1012 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCP 1071
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D Y GYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1072 KDPFGLPRIDQVVDSTAGCELLSFLDCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1131
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR M+L
Sbjct: 1132 GLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKL 1191
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1192 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFV 1251
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW + ++AF+ K+LL++PP+L+ P P PL ++I+ +
Sbjct: 1252 SRLGERGMPFFKLLKKTDDFQWGPDAQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAAS 1311
Query: 537 NAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E R IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1312 QVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1371
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
+ V T F L +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1372 SHSVTVVTSFSLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1431
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ + W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1432 QEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1491
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D ++++HV
Sbjct: 1492 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHV 1551
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTGA-----APSDWMDR 822
R N AD L S K+ V E L +P++ D + G +DW +
Sbjct: 1552 LRHNNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREP 1610
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
+ L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1611 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1670
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1671 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1730
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1731 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNG QFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1790 FGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R Y
Sbjct: 1850 FDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNYR 1909
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EEV+ ++ A Q R +N V R VGDLVLR+
Sbjct: 1910 EERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1969
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1970 DRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
>gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532648|ref|NP_920626.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881548|gb|AAM00949.1| Putative retroelement [Oryza
sativa]
Length = 1945
Score = 850 bits (2195), Expect = 0.0
Identities = 470/1247 (37%), Positives = 692/1247 (54%), Gaps = 66/1247 (5%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 741 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 797
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 798 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 856
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + + TKT K GE
Sbjct: 857 TCDKESCDMAQTREMASAREDIRLAAATASEGEI----------------PATKTSKSGE 900
Query: 177 RNLKVGVNLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVKPIAQMK 236
K + T A N D+FAW D+PGI I H L + KPI Q
Sbjct: 901 SEAKTKKIPLDPSDPTKT---ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRL 957
Query: 237 RKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTDLNKHCP 296
R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTDLNK CP
Sbjct: 958 RRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCP 1017
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYCYQTMPF 356
KD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YCY TMPF
Sbjct: 1018 KDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPF 1077
Query: 357 GLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIRKHNMRL 416
GLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ G DL E F IR M+L
Sbjct: 1078 GLKNAGATYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKGDLISDLEETFVSIRAFRMKL 1137
Query: 417 NPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIAALSRFL 476
NPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +AALSRF+
Sbjct: 1138 NPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFV 1197
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSVFISISD 536
G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +++S +
Sbjct: 1198 SRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATS 1257
Query: 537 NAVSSVLLQECKDELRI------IYFVSHALQGAELRYQKIEKAALALIISARKLRPYFQ 590
VS+VL+ E ++E + IYFVS L ++ RY +++K ++I+ RKL YFQ
Sbjct: 1258 QVVSTVLVVEREEECHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQ 1317
Query: 591 GFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV---NEM 647
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV E
Sbjct: 1318 GHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTEC 1377
Query: 648 SPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQAEYEAII 707
+ W + DGS L G+GAGVVL P G + L F AS+N AEYEA++
Sbjct: 1378 QEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1437
Query: 708 AGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHV 767
G+ +AI + + L+++ DSQLV NQ++ +L + + ++++HV
Sbjct: 1438 HGLRIAISLGIKRLIVRGDSQLVVNQVR------------------KLEDKFEGLELSHV 1479
Query: 768 PREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVM-----VTGAAPSDWMDR 822
R N AD L S K+ V E L +P++ D +DW +
Sbjct: 1480 LRHNNEAADRLANFGS-KRETAPSDVFVEHLYTPTVPHKDTTQDADTHDVAMVEADWREP 1538
Query: 823 IKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADRIMFEVH 881
L + +++ R + YV+ +LY++ L RCV+ +E +++ ++H
Sbjct: 1539 FIRFLTSQELPQDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEGRQLLKDIH 1598
Query: 882 EGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEVLSSMSS 941
G+C +H R++ K R GF+WPT +D + CE CQ +A P + L ++
Sbjct: 1599 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1658
Query: 942 AWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYWRKIICR 1001
+WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+ I+ R
Sbjct: 1659 SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1717
Query: 1002 FGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRL 1061
FGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL GIK R+
Sbjct: 1718 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1777
Query: 1062 GDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYD 1117
D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ + R +
Sbjct: 1778 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1837
Query: 1118 ENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLRRKAKGP 1177
E E+R+ DL+ EE + +R A Q R +N V R VGDLVLR+
Sbjct: 1838 EERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR 1897
Query: 1178 DDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1898 DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1944
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 846 bits (2185), Expect = 0.0
Identities = 470/1253 (37%), Positives = 693/1253 (54%), Gaps = 65/1253 (5%)
Query: 1 DQGSSADLIYGDAYEKLGLTEADL----LPYDGALVGFSGERVFVRGYVELNTVFGEGIN 56
D GS+ ++++ + + + ++L P+ G + G S + G + L FG N
Sbjct: 791 DGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPL---GQITLPVTFGTREN 847
Query: 57 AESFAIKFLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAW 116
+ I F V + Y+ ++GRP+L K A+ ++ +K P +G + L++D A
Sbjct: 848 FRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLS-LRSDIKQAV 906
Query: 117 RCYSESFKQYGHMGKRAVKEGHRVYGVDIDQEGVCLDPREGFLEHKMTPEEETKTVKVGE 176
C ES + +E R+ + + + TKT K GE
Sbjct: 907 TCDKESCDMAHTHEMASAREDIRLAAATASEGEIPV----------------TKTSKSGE 950
Query: 177 RNLKVGV------NLTAIQEARLTQLLAENMDLFAWSAQDLPGIDPNFICHKLALNPGVK 230
K + T E+ L L N D+FAW D+PGI I H L + K
Sbjct: 951 SEAKTKKIPLDPSDPTKTAESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAK 1010
Query: 231 PIAQMKRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMVKKSNGKWRMCTDYTD 290
PI Q R+ +++ A+K E KL+ AGFI+EV +P WLAN V+V+K G+WRMC DYTD
Sbjct: 1011 PIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTD 1070
Query: 291 LNKHCPKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTNQANYC 350
LNK CPKD + LP ID++VD +G +LS +D YSGYHQIR+ D KT+F+T YC
Sbjct: 1071 LNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYC 1130
Query: 351 YQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGGHCLDLAEAFGEIR 410
Y TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD+VVK+++ DL E F IR
Sbjct: 1131 YVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIR 1190
Query: 411 KHNMRLNPEKCSFGIQSGKFLGFMITRRGIEVNPDKCKAILEMQSPTSVKEVQKLIGRIA 470
M+LNPEKC+FG+ SGK LGFM++ RGI+ NP+K AIL M+ P++ K+VQKL G +A
Sbjct: 1191 AFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMA 1250
Query: 471 ALSRFLPCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKELLSKPPILSRPIPGTPLSV 530
ALSRF+ G + PFF+ L+K FQW E ++AF+ K+LL++PP+L+ P P PL +
Sbjct: 1251 ALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLL 1310
Query: 531 FISISDNAVSSVLLQECKDE------LRIIYFVSHALQGAELRYQKIEKAALALIISARK 584
++S + VS+VL E ++E R IYFVS L ++ RY +++K
Sbjct: 1311 YVSATSQVVSTVLAVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQK----------- 1359
Query: 585 LRPYFQGFQIKVKTDFPLRQVLQKPDLAGRMVSWAVELSEFGIVFEKKGQVKAQVLADFV 644
G + V T FPL +L + GR+ WA+EL I F+ + +K+Q LADFV
Sbjct: 1360 ---LLYGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFV 1416
Query: 645 ---NEMSPEVKVSEEAEWILSVDGSSYLKGSGAGVVLEGPGGVIIEQSLKFDFKASNNQA 701
E + W + DGS L G+GAGVVL P G + L F AS+N A
Sbjct: 1417 AEWTECQEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVA 1476
Query: 702 EYEAIIAGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDS 761
EYEA++ G+ +AI + + L+++ DSQLV NQ+ ++ D + Y + ++L + D
Sbjct: 1477 EYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDG 1536
Query: 762 VQVNHVPREENTRADVLCKLASTKKPGNNKSVIQETLKSPSINEDDVVMVTG-----AAP 816
++++HV R N AD L S K+ V E L +P++ D V G
Sbjct: 1537 LELSHVLRHNNEAADRLANFGS-KREVAPSDVFVEHLYTPTVPHKDTTQVAGTHDVAVVE 1595
Query: 817 SDWMDRIKMCLEADGADLALFSKDQV-REASHYVLLGDQLYRRGVGVPLLRCVTRDEADR 875
+DW + + L + +++ R + YV+ +LY++ L RCV+ +E +
Sbjct: 1596 TDWREPLIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQ 1655
Query: 876 IMFEVHEGVCASHVGGRSLAAKVLRAGFYWPTLKNDCMGYAKKCEKCQIYADLHRAPPEV 935
++ ++H G+C +H R++ K R GF+WPT +D + CE CQ +A P +
Sbjct: 1656 LLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQE 1715
Query: 936 LSSMSSAWPFAMWGVDILGPFTPAGAQIRFVLVAVDYFTKWIEAESMAKITAEKVKKFYW 995
L ++ +WPFA+WG+D++GPF A + VA+D F+KWIEA+ + ITA+ + F+
Sbjct: 1716 LQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF- 1774
Query: 996 RKIICRFGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILN 1055
I+ RFGVP +++DNGTQFT + +DFC + GI++ +ASV HP SNGQVE AN +IL
Sbjct: 1775 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1834
Query: 1056 GIKKRLGDA----KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTF 1111
GIK R+ D G W +L +V+W+ TTP TG++PF L YG +AM+P E++ +
Sbjct: 1835 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1894
Query: 1112 RVAAYDENENHENRLIDLNLAEEVKTEVRLRQAAVKQRSERRYNTRVVPRHMQVGDLVLR 1171
R + E E+R+ DL+ EE + +R A Q R +N V R VGDLVLR
Sbjct: 1895 RFRNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLR 1954
Query: 1172 RKAKGPDDSKLSPNWEGPYRILRDLGQGAYHLEELSGRRIPRAWNAQHLRYYY 1224
+ D KLSP WEGP+ I G+Y L+ G + +WN +HLR +Y
Sbjct: 1955 KIQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2007
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,044,854,982
Number of Sequences: 2540612
Number of extensions: 86323000
Number of successful extensions: 248624
Number of sequences better than 10.0: 36844
Number of HSP's better than 10.0 without gapping: 4355
Number of HSP's successfully gapped in prelim test: 32490
Number of HSP's that attempted gapping in prelim test: 226069
Number of HSP's gapped (non-prelim): 42090
length of query: 1224
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1084
effective length of database: 507,674,714
effective search space: 550319389976
effective search space used: 550319389976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0306.1