BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.9
(156 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_910375.1| hypothetical protein [Oryza sativa (japonica cu... 51 1e-05
dbj|BAC87908.1| probable acinetobactin biosynthesis protein [Aci... 32 4.1
emb|CAA51865.1| heat shock 70-related protein [Beet yellows viru... 32 6.9
gb|AAN69820.1| microcin b17 processing protein mcbd, putative [P... 32 6.9
emb|CAI74078.1| hypothetical protein [Theileria annulata] 31 9.0
ref|NP_463988.1| hypothetical protein lmo0459 [Listeria monocyto... 31 9.0
emb|CAB72463.1| protein kinase-like protein [Arabidopsis thalian... 31 9.0
ref|YP_014650.1| hypothetical protein LMOf2365_2057 [Listeria mo... 31 9.0
ref|YP_013099.1| hypothetical protein LMOf2365_0493 [Listeria mo... 31 9.0
ref|ZP_00240044.1| periplasmic component of efflux system [Bacil... 31 9.0
ref|ZP_00232303.1| conserved hypothetical protein [Listeria mono... 31 9.0
ref|ZP_00231739.1| conserved hypothetical protein [Listeria mono... 31 9.0
ref|ZP_00230314.1| transcription regulator [Listeria monocytogen... 31 9.0
ref|NP_190047.2| protein kinase family protein [Arabidopsis thal... 31 9.0
>ref|NP_910375.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 231
Score = 50.8 bits (120), Expect = 1e-05
Identities = 46/173 (26%), Positives = 77/173 (43%), Gaps = 36/173 (20%)
Query: 4 LEISMVSVEGLGKYSSSYF----------ITLTNLSNHLVYSYDGGGAEEHMFR----VP 49
LE++++S E L SY+ +T+++ ++ + EH + VP
Sbjct: 37 LEVTVLSAESLRLPPPSYYSLIPRRLRPYVTVSSAASACSTDVAAAASGEHSWNDTLVVP 96
Query: 50 VDHTFFFDTQHSSLQLHLYNK---RRILGPTQLGWCMIPALDIGFLNLRDSAAVRYLSYR 106
V F + + +Y++ R + G T LGWC IPA D+ LR A+R LSY
Sbjct: 97 VGAEFLESRGGGGVHVAVYSEPACRLVGGATPLGWCRIPAADV-LDGLRPPRALRRLSYS 155
Query: 107 LRA-TDGCRSDIIINLSVKLLG-----------------SPDTCQTVIGIPVT 141
LR G + +++L+V++LG P C+ +GIPV+
Sbjct: 156 LRCPRTGGPARGVVHLAVRVLGDLVPPPPPQHAPSTPPAQPGWCRVAMGIPVS 208
>dbj|BAC87908.1| probable acinetobactin biosynthesis protein [Acinetobacter
baumannii]
Length = 383
Score = 32.3 bits (72), Expect = 4.1
Identities = 29/118 (24%), Positives = 52/118 (43%), Gaps = 9/118 (7%)
Query: 20 SYFITLTNLSNHLVYSY-DGGGAEEHMFRVPVDHTFFFD-TQHSSLQLHLYNKRRILGPT 77
+YF + + + Y GG E +MF + F D T +SS H Y+ R+I
Sbjct: 72 AYFAEIFQIPFEESWGYVTNGGTEGNMFGCYLARELFPDSTLYSSKDTH-YSVRKIAKLL 130
Query: 78 QLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDIIINLSVKLLGSPDTCQTV 135
Q+ C+I +LD G ++ D L ++++ I N+ + G+ D + +
Sbjct: 131 QMKSCVIESLDNGEIDYDD------LIHKIKTNKESHPIIFANIGTTMTGAIDDIEMI 182
>emb|CAA51865.1| heat shock 70-related protein [Beet yellows virus]
gi|58880|emb|CAA37551.1| HSP70 homologue [Beet yellows
virus] gi|585271|sp|P37092|HSP7L_BYV Heat shock protein
70 homolog gi|9627406|ref|NP_041872.1| heat shock
70-related protein [Beet yellows virus]
Length = 598
Score = 31.6 bits (70), Expect = 6.9
Identities = 26/102 (25%), Positives = 45/102 (43%), Gaps = 20/102 (19%)
Query: 32 LVYSYDGGGAEEHMFRVPVDHTFFFDTQHSSLQL-----------HLYNKRRILGPTQLG 80
LVY + GG + + +++TF + L HLYNK ++ P
Sbjct: 201 LVYDFGGGTFDVSVISA-LNNTFVVRASGGDMNLGGRDIDKAFVEHLYNKAQL--PVNY- 256
Query: 81 WCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDIIINLS 122
+DI FL S V +L++ + + G R D+++N+S
Sbjct: 257 -----KIDISFLKESLSKKVSFLNFPVVSEQGVRVDVLVNVS 293
>gb|AAN69820.1| microcin b17 processing protein mcbd, putative [Pseudomonas putida
KT2440] gi|26990931|ref|NP_746356.1| microcin b17
processing protein mcbd, putative [Pseudomonas putida
KT2440]
Length = 400
Score = 31.6 bits (70), Expect = 6.9
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 58 TQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDI 117
++ SSLQ H +++ + T C +P + ++S + Y +R T GC + I
Sbjct: 98 SEKSSLQSHCFDRTTVYRVTDFTSCKVPTACLSISECKNSTDNGF--YPIRDTCGCSAHI 155
Query: 118 IINLSV 123
IN +V
Sbjct: 156 TINNAV 161
>emb|CAI74078.1| hypothetical protein [Theileria annulata]
Length = 778
Score = 31.2 bits (69), Expect = 9.0
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 2 TTLEISMVSVEGLGKYSSSYFITLTNLSNHLVYSYDGGGAEEHMFRVP 49
TT++ M+ + +SS L NL+N+++Y Y G HMF P
Sbjct: 217 TTIKYQMIKRDSFSNIASSVDTLLLNLTNNVIY-YIPGSKAVHMFTCP 263
>ref|NP_463988.1| hypothetical protein lmo0459 [Listeria monocytogenes EGD-e]
gi|16409836|emb|CAC98538.1| lmo0459 [Listeria
monocytogenes] gi|25514826|pir||AD1132 transcription
regulator (VirR from Streptococcus pyogenes) homolog
lmo0459 [imported] - Listeria monocytogenes (strain
EGD-e)
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>emb|CAB72463.1| protein kinase-like protein [Arabidopsis thaliana]
gi|11260282|pir||T47436 protein kinase-like protein -
Arabidopsis thaliana
Length = 472
Score = 31.2 bits (69), Expect = 9.0
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Query: 93 NLRDSAAVRYLSYRLRATDGCRSDIIINLSVKLLGSPDTCQTVIGIPVTAVRGVDKKQLA 152
+LR S ++ L +RLR G + + L +T T + +P+ A + +DKK+LA
Sbjct: 59 SLRSSLSLSDLRFRLRLGSGDIGSVFLAEFKSLTAVTET--TAVKLPLLAAKVMDKKELA 116
Query: 153 AR 154
+R
Sbjct: 117 SR 118
>ref|YP_014650.1| hypothetical protein LMOf2365_2057 [Listeria monocytogenes str. 4b
F2365] gi|46881532|gb|AAT04827.1| conserved hypothetical
protein [Listeria monocytogenes str. 4b F2365]
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>ref|YP_013099.1| hypothetical protein LMOf2365_0493 [Listeria monocytogenes str. 4b
F2365] gi|46879975|gb|AAT03276.1| conserved domain
protein [Listeria monocytogenes str. 4b F2365]
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>ref|ZP_00240044.1| periplasmic component of efflux system [Bacillus cereus G9241]
gi|47553949|gb|EAL12317.1| periplasmic component of
efflux system [Bacillus cereus G9241]
Length = 389
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/76 (28%), Positives = 42/76 (54%), Gaps = 6/76 (7%)
Query: 60 HSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDIII 119
H SLQ++L NK + PT+ +I D F+ + D +R + + +TDG ++++
Sbjct: 316 HVSLQVNLENKTMVAVPTK---SIIEKDDDAFVYVEDKGKLRKQNVKKGSTDGDWTEVVE 372
Query: 120 NLSV--KLLGSP-DTC 132
++V K++ +P D C
Sbjct: 373 GVTVGQKVVKNPSDXC 388
>ref|ZP_00232303.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854] gi|47016828|gb|EAL07746.1| conserved hypothetical
protein [Listeria monocytogenes str. 1/2a F6854]
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>ref|ZP_00231739.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858] gi|47017612|gb|EAL08413.1| conserved hypothetical
protein [Listeria monocytogenes str. 4b H7858]
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>ref|ZP_00230314.1| transcription regulator [Listeria monocytogenes str. 4b H7858]
gi|47019117|gb|EAL09861.1| transcription regulator
[Listeria monocytogenes str. 4b H7858]
Length = 512
Score = 31.2 bits (69), Expect = 9.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 47 RVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY---L 103
+V + F+ H+S Q L N I PT + DI + + V L
Sbjct: 12 KVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNL 71
Query: 104 SYRLRATDGCRSDIIINLSVK 124
SY L+ +D C +IIN ++
Sbjct: 72 SYTLKISDNCSIQLIINAYIR 92
>ref|NP_190047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 451
Score = 31.2 bits (69), Expect = 9.0
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Query: 93 NLRDSAAVRYLSYRLRATDGCRSDIIINLSVKLLGSPDTCQTVIGIPVTAVRGVDKKQLA 152
+LR S ++ L +RLR G + + L +T T + +P+ A + +DKK+LA
Sbjct: 59 SLRSSLSLSDLRFRLRLGSGDIGSVFLAEFKSLTAVTET--TAVKLPLLAAKVMDKKELA 116
Query: 153 AR 154
+R
Sbjct: 117 SR 118
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,376,083
Number of Sequences: 2540612
Number of extensions: 10340541
Number of successful extensions: 15479
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 15479
Number of HSP's gapped (non-prelim): 14
length of query: 156
length of database: 863,360,394
effective HSP length: 117
effective length of query: 39
effective length of database: 566,108,790
effective search space: 22078242810
effective search space used: 22078242810
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0304.9