BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.11
(1797 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 654 0.0
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 610 e-172
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 589 e-166
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 580 e-163
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 580 e-163
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 575 e-162
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 574 e-162
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 568 e-160
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 566 e-159
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 565 e-159
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 555 e-156
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 537 e-150
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 537 e-150
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 533 e-149
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 532 e-149
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 529 e-148
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 505 e-141
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 492 e-137
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 475 e-132
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 468 e-130
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 654 bits (1688), Expect = 0.0
Identities = 341/927 (36%), Positives = 534/927 (56%), Gaps = 8/927 (0%)
Query: 424 MRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVD 483
MR++SWNC+GVG + T R L+EI P ++FL ET+ RRN +E + L F + V+
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 484 PIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWD 543
PIG +GGLAL W +++L S++ I ++ ++K T IYGEP++ R LW+
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKEF--YLTCIYGEPVQAERGELWE 118
Query: 544 SISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCK 603
++RL GPW GDFNE + EK G + + S FR ++S L ++ G +
Sbjct: 119 RLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQ 178
Query: 604 YTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKH-RSG 662
++W N + V + +LDR ++N +W L+P A L + SDHSPLI + V + R
Sbjct: 179 FSWYGNRNDELV-QCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKW 237
Query: 663 RQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADK 722
FKY+ W + + ++ + W+ N + K+ SC+ ++KW++V+ +
Sbjct: 238 AGFKYDKRWVQREGFKDLLCNFWSQQSTKTN--ALMMEKIASCRREISKWKRVSKPSSAV 295
Query: 723 EIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTH 782
I++L+ +L + + D E+A+ K ++ Q + EE FW +SR+ W + GDRNT
Sbjct: 296 RIQELQFKLDAATKQI--PFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTK 353
Query: 783 FFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVP 842
+FHA T RR +NRI +L D G E + +F+ +F SE V E L +
Sbjct: 354 YFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLT 413
Query: 843 KLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHS 902
L+ +NN L+ +T EE++ S++ K PGPDG+NG ++ W +G ++ +V +
Sbjct: 414 PLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQA 473
Query: 903 FFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDII 962
FF + ++ +N+T + L+PKI E +RPIS CN +YK+I K++ RLK L +I
Sbjct: 474 FFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLI 533
Query: 963 TPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKAL 1022
+ Q+AF+K RLI DNILIAHE+ HAL + ++ +AIK D+SKAYDRVEW FLEKA+
Sbjct: 534 SETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAM 593
Query: 1023 LAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSH 1082
GF W+ L+M V+ V Y+ +NG + IP RGLRQGDPLSPYLFV+ ++L
Sbjct: 594 RGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVK 653
Query: 1083 MILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQR 1142
M+ A+ + I G+K++ P I+HL FADDS+ + K + ++++ +S AS QR
Sbjct: 654 MLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQR 713
Query: 1143 INTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMK 1202
+N KSS+ KHI + + I G YLGLP + SK L+++K+R+
Sbjct: 714 VNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLG 773
Query: 1203 EKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKS 1262
+K+ GW+ L+ GKE+L+K+V ++PTY M+ PK C++++S++A FWW N K+
Sbjct: 774 KKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEG 833
Query: 1263 RGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDS 1322
RG+H K W L+ K GG+GF+E N+A + KQ WR+ +L+A+V K+ YF S
Sbjct: 834 RGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKS 893
Query: 1323 SFLDATPKPGDSWMWRANQRQELLDRQ 1349
L+A S+ W++ ++L +Q
Sbjct: 894 DPLNAPLGSRPSFAWKSIYEAQVLIKQ 920
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 610 bits (1574), Expect = e-172
Identities = 325/923 (35%), Positives = 511/923 (55%), Gaps = 10/923 (1%)
Query: 425 RLISW--NCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCV 482
+L++W NCRG+G++ T EL+ + +PS++FL ET+ R + L ++L FS F V
Sbjct: 5 KLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAV 64
Query: 483 DPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALW 542
G +GGLALFW TV + N ++I V+++ +E + +F+YGEP R+ R W
Sbjct: 65 SCEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEE-LPPWRISFVYGEPKRELRHFFW 123
Query: 543 DSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGC 602
+ + RL +GPW C GDFNE L E G+ +S+ + FRS +D L ++ G
Sbjct: 124 NLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGP 183
Query: 603 KYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKHRSG 662
K+TW + ++ +LDR ++N + + LV + SSDH + +D ++
Sbjct: 184 KFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQ 243
Query: 663 RQ------FKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVT 716
R+ F++EA W +D +VVE++W + G + + ++ + L W K +
Sbjct: 244 RRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKAS 303
Query: 717 FSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQW 776
F ++I K++ +L S+ + + E + Q+ +L+ +EE+ RSR+ W +
Sbjct: 304 FGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLRE 363
Query: 777 GDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQE 836
GDRNT FFHA RR NRI L GS QEG+ ++ +F SE ++E
Sbjct: 364 GDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEE 423
Query: 837 CLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEV 896
L +P + +N +L + T+EEIK M S KAPGPDG LF++THW ++ +
Sbjct: 424 VLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHI 483
Query: 897 CSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKG 956
C+ V F + + +++V L+PK+ + +++RPIS CN LYKI SKV+ RLK
Sbjct: 484 CNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKP 543
Query: 957 ELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWE 1016
L DI++ QSAF+ RLI D+ L+A+E H ++ + ++ A+K+DM KAYDRVEW
Sbjct: 544 FLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNP-FFALKIDMMKAYDRVEWA 602
Query: 1017 FLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLV 1076
+L L GF W++ VM V V Y K+NG L++ +P RG+RQGDP+SPYLF+L
Sbjct: 603 YLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLC 662
Query: 1077 MDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFS 1136
+ LS ++ + + G +QGIK P I+HL FADDS+ FAKA + L ++
Sbjct: 663 TEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYC 722
Query: 1137 SASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAW 1196
SAS Q+IN KSS+ K P +K + + Q+ YLG+P G + T +
Sbjct: 723 SASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKF 782
Query: 1197 IKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWW 1256
+ ER+ +++ GW + L++AG E ++K+V Q+IP Y M+ P C+++ + +A WW
Sbjct: 783 LPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWW 842
Query: 1257 SNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKA 1316
+ +H K W L+ K GGMGFREF N A + +Q WR+ P +L ++V+K
Sbjct: 843 GFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKG 902
Query: 1317 LYFPDSSFLDATPKPGDSWMWRA 1339
YFP+SSF +A S+ WR+
Sbjct: 903 RYFPNSSFWEAAQPKSPSFTWRS 925
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 589 bits (1519), Expect = e-166
Identities = 317/939 (33%), Positives = 516/939 (54%), Gaps = 31/939 (3%)
Query: 413 GGGH*SAPNVSMRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKF 472
G G ++P MR+ WNC+G+G T R L+E+ +LFL+ET+ + N L
Sbjct: 355 GAGTTTSP---MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGV 411
Query: 473 ALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGE 532
+ F + + P G +GGL ++W K +++++ + + + + K + IYG
Sbjct: 412 KMGFEDMCIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKN--FNFYLSCIYGH 469
Query: 533 PLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSN 592
P+ R LW+ + R+ GPW GDFNE L +EK G +S SL F + ++
Sbjct: 470 PIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCC 529
Query: 593 ALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLI 652
+ ++ KG Y+W+ R+ LDRV N W++ +P LP+ SDH+P+I
Sbjct: 530 NMKDLKSKGNPYSWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVI 588
Query: 653 LDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWET-LQNKVKSCQIGLT 710
+D + + R QF+Y+ + +D V+ WN +G +D K+ C+ L
Sbjct: 589 IDIAEEVCTKRGQFRYDRRHFQFEDFVDSVQRGWN---RGRSDSHGGYYEKLHCCRQELA 645
Query: 711 KWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSR 770
KW++ T + ++IE LK R+ + + H + + + + + Q +R EEL+W +SR
Sbjct: 646 KWKRRTKTNTAEKIETLKYRVDAAERD--HTLPHQTILRLRQDLNQAYRDEELYWHLKSR 703
Query: 771 LQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQ 830
+W GDRNT FF+A+T R+ RNRI + D G + + + ++F +F + Q
Sbjct: 704 NRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQ 763
Query: 831 VTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWN 890
+ +E +S + + +N++L+++VTD+E++ ++ + +APG DG F+ W+
Sbjct: 764 TSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWD 823
Query: 891 VVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVI 950
++G +VC +V FF + + IN+T + L+PKI + + YRPIS C YKIISK++
Sbjct: 824 LIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKIL 883
Query: 951 VARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAY 1010
+ RLK L D+I+ +Q+AF+ + I DN+L+AHE+ H+L+ R ++A+K D+SKAY
Sbjct: 884 IKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAY 943
Query: 1011 DRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSP 1070
DRVEW FLEK ++ GF WV +M V VSY+ +NG K P RG+RQGDPLSP
Sbjct: 944 DRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSP 1003
Query: 1071 YLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQ 1130
YLF+ +VLS+M+ +A+ I G+K++ I+HL FADDSL F +A+ Q
Sbjct: 1004 YLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLAL 1063
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSK 1190
+ + AS Q+IN +KSS+ + IPT+ + ++ + I G YLGLP GR K
Sbjct: 1064 IFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRK 1123
Query: 1191 TRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSL 1250
+I ++KE+ GW L+ AGKE++IK++ ++P Y+M P C E++SL
Sbjct: 1124 VELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSL 1183
Query: 1251 VARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLV 1310
+ FWW + EG +GF++ H N A + KQAWRI P +L+
Sbjct: 1184 ITAFWWG------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLL 1225
Query: 1311 AQVMKALYFPDSSFLDATPKPGDSWMWRANQRQELLDRQ 1349
A++ K LY+P++++L A S+ W + Q +LL +Q
Sbjct: 1226 ARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQ 1264
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 580 bits (1496), Expect = e-163
Identities = 315/920 (34%), Positives = 499/920 (54%), Gaps = 11/920 (1%)
Query: 423 SMRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCV 482
+M ++WNCRG+G + T ++L+ + K ++FL ETR K+ RL+ L F F V
Sbjct: 635 AMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGV 694
Query: 483 DPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALW 542
G +GGLAL+W++ +V++ D N+ YI + TF+YGEP + R +W
Sbjct: 695 SSEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMW 754
Query: 543 DSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGC 602
+ ++ + PW +GDFNETL+Q E +P+ + + FR + L ++ KG
Sbjct: 755 SLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGV 814
Query: 603 KYTWLSNPREGFVT-REKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKHRS 661
+T+ N R+G+ + +LDR +++ WR L+P A V L SDHSP++L+ + K +
Sbjct: 815 PHTY-DNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTT 873
Query: 662 GRQFK---YEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFS 718
+ K YE W + +V+E+AW + D + + L W K
Sbjct: 874 RPRQKCLHYEIVWEREPESVQVIEEAWINAGV-KTDLGDINIALGRVMSALRSWSKTKVK 932
Query: 719 RADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGD 778
KE+EK + +L + + + + + Q + ++ +EE+ W RSR+ W + GD
Sbjct: 933 NVGKELEKARKKLEDLIASNAAR---SSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGD 989
Query: 779 RNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENI-TDHFQLIFKSEQVTQIQEC 837
RNT FFH+ + R +N+I +L+D G+ I V+E + T++FQ ++K++ +
Sbjct: 990 RNTRFFHSRAVWRAKKNKISKLRDENGA-IHSTTSVLETMATEYFQGVYKADPSLNPESV 1048
Query: 838 LSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVC 897
+ + +N KL + +EEI + LK+P PDG F++ +W + ++
Sbjct: 1049 TRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDII 1108
Query: 898 SVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGE 957
V +FF + + +N+T + L+PK YRPIS CN +YK++SK +V RL+
Sbjct: 1109 LAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPI 1168
Query: 958 LNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEF 1017
L+D+++ QSAFI+ R+I DN L+A E FH++Q + + A KLD+SKAYDRV+W F
Sbjct: 1169 LDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRF 1228
Query: 1018 LEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVM 1077
LE AL GF WVS +M V V Y K NG L R + P RGLRQG+PLSP+LF+ V
Sbjct: 1229 LELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVA 1288
Query: 1078 DVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSS 1137
D LS ++ + Q + +K+ P I++L FADD+L+F KA ++EA ++L ++
Sbjct: 1289 DGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQ 1348
Query: 1138 ASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWI 1197
+ Q IN +K S+ + P+ + + N Q+ YLG P GR +
Sbjct: 1349 GTGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSL 1408
Query: 1198 KERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWS 1257
+ ++ +++ W E L+ GKE+LIK+VIQ+IP Y M + FP EL + FWW
Sbjct: 1409 QAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWG 1468
Query: 1258 NNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKAL 1317
+ R H + W SLT +K GG+GFR++ L N A +T+QAWR+ P++L AQV+KA
Sbjct: 1469 ADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAK 1528
Query: 1318 YFPDSSFLDATPKPGDSWMW 1337
YFP S D T S W
Sbjct: 1529 YFPHGSLTDTTFSANASPTW 1548
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 580 bits (1494), Expect = e-163
Identities = 309/908 (34%), Positives = 490/908 (53%), Gaps = 11/908 (1%)
Query: 433 GVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLA 492
G+G T L + ILFL+ET + +K+ +L + L F N P G +GGLA
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLA 450
Query: 493 LFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLA 552
L W ++ ++ ++ I +T K + +YG P + R LW ++ +
Sbjct: 451 LMWKNNVSLSLISQDERLIDSHVTFNNKSF--YLSCVYGHPTQSERHQLWQTLEHISDNR 508
Query: 553 QGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPRE 612
W +GDFNE L EK G + + + FR+ V + ++ KG +++W+ R
Sbjct: 509 NAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RH 567
Query: 613 GFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLIL---DPVPKHRSGRQFKYEA 669
+ LDRV N +W + +P+A + L SDH P+++ + P R + F+++
Sbjct: 568 THTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFP--RRSKLFRFDN 625
Query: 670 FWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKA 729
+ ++V+ +W T + + ++ SC+ + + + + +++ I+KL++
Sbjct: 626 RLIDIPTFKRIVQTSWRTNRNSRST--PITERISSCRQAMARLKHASNLNSEQRIKKLQS 683
Query: 730 RLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTI 789
L+ E ++D + Q + + + + EE++W +SR QW + GD+NT +FHA T
Sbjct: 684 SLNRAM-ESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTK 742
Query: 790 QRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDL 849
R +NR++ + D G G + + + D F IF + + + + +
Sbjct: 743 TRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTV 802
Query: 850 NNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTL 909
N L + +D EI + KAPGPDGL F+K W++VG +V V FF TS +
Sbjct: 803 NLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFM 862
Query: 910 SPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAF 969
P IN T + ++PKI + + YRPI+ CN LYK+ISK +V RLK LN I++ +Q+AF
Sbjct: 863 KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 922
Query: 970 IKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCG 1029
I R+I DN++IAHE+ H+L+ R R K ++A+K D+SKAYDRVEW+FLE + +GFC
Sbjct: 923 IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 982
Query: 1030 PWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKN 1089
W+ +M V+ V Y +NG P RG+RQGDPLSPYLF+L D+LSH+I +
Sbjct: 983 KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRAS 1042
Query: 1090 QGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSS 1149
G ++G+++ P ITHL FADDSL F +A + + + + S Q+IN KS
Sbjct: 1043 SGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 1102
Query: 1150 MSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWK 1209
++ + ++++ I +IP G YLGLP +GR K +I +R+K++ + W
Sbjct: 1103 ITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 1162
Query: 1210 EVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKD 1269
L+ AGKE+++KSV ++P YAM+ PKG E++SL+ FWW RGI
Sbjct: 1163 ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVA 1222
Query: 1270 WHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATP 1329
W L SKKEGG+GFR+ N A + KQAWR+ P++L A+VMKA YF D S LDA
Sbjct: 1223 WKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKV 1282
Query: 1330 KPGDSWMW 1337
+ S+ W
Sbjct: 1283 RKQQSYGW 1290
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 575 bits (1483), Expect = e-162
Identities = 317/916 (34%), Positives = 500/916 (53%), Gaps = 10/916 (1%)
Query: 426 LISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPI 485
+ISWNC+G+ T R LKE+ P ILFLMET+ ++ + ++ L + V+P
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 486 GTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSI 545
G +GGLA+FW +E L +++N + + ++ + KV + +YG P+ R LW+ +
Sbjct: 62 GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSRNKVWFI--SCVYGLPVTHMRPKLWEHL 119
Query: 546 SRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYT 605
+ + WC +GDFN+ EK G +S S F + + ++ + G +T
Sbjct: 120 NSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFT 179
Query: 606 WLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKHRSGR-Q 664
W N + +V + KLDR N +W S++P+A L SDH P+++ + R Q
Sbjct: 180 WGGNRNDQWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ 238
Query: 665 FKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEI 724
F+Y+ ++ C +V+ +WN+ + + + ++ C+ ++ W+ + + A I
Sbjct: 239 FRYDKRLDDDPYCIEVIHRSWNSA-MSQGTHSSFFSLIE-CRRAISVWKHSSDTNAQSRI 296
Query: 725 EKLKARLSSMHNEDHHKID-WNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHF 783
++L+ L + E +I W + K Q+ + EELFW +SR +W GD+NT F
Sbjct: 297 KRLRKDLDA---EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGF 353
Query: 784 FHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPK 843
FHAT R +N + L D + + F+ +F S + L +
Sbjct: 354 FHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQA 413
Query: 844 LIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSF 903
+ +++N+ L++ VT+ E+ S++ APGPDG LFF+ HW++V ++ + + F
Sbjct: 414 KVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGF 473
Query: 904 FNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIIT 963
F T L N T + L+PKI S + + RPIS C+ LYKIISK++ RLK L I++
Sbjct: 474 FETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVS 533
Query: 964 PNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALL 1023
QSAF+ RLI DNIL+AHE+ H+L+ R K+H+A K DMSKAYDRVEW FLE +
Sbjct: 534 TTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMT 593
Query: 1024 AYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHM 1083
A GF W+S +MN V VSY +NG IP RG+RQGDPLSP LFVL + L H+
Sbjct: 594 ALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHI 653
Query: 1084 ILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRI 1143
+ +A+ G I GI+ + HL FADD+L+ KAT+QE +Q L+ + S Q I
Sbjct: 654 LNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMI 713
Query: 1144 NTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKE 1203
N +KS+++ K++ +K + + I G YLGLP SK +IKE+++
Sbjct: 714 NLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQS 773
Query: 1204 KIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSR 1263
++ GW L+Q GKEVL+KS+ ++P Y M+ PK C++L +++ FWW++ ++ R
Sbjct: 774 RLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKR 833
Query: 1264 GIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSS 1323
IH W LT K +GG GF++ N A + KQAWR+ +L ++V ++ YF +S
Sbjct: 834 KIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSD 893
Query: 1324 FLDATPKPGDSWMWRA 1339
FL AT S+ WR+
Sbjct: 894 FLSATRGSRPSYAWRS 909
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 574 bits (1480), Expect = e-162
Identities = 322/899 (35%), Positives = 491/899 (53%), Gaps = 26/899 (2%)
Query: 397 GIPQRTFLSKFCYHGWGGGH*SAPNVSMRLISWNCRGVGASTTARELKEINSKQKPSILF 456
G+ Q + S FC + + M++I+WNCRG+G T R L + + P ILF
Sbjct: 431 GVKQISQASCFCINKY----------PMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILF 480
Query: 457 LMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMIT 516
L T+ NK++ ++ L N D G +GGLA+FW KE + + ++ ++ V +
Sbjct: 481 LSNTKMDTNKLQCFRWKLGMPNLVVKDCQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVM 540
Query: 517 EKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHP 576
E + +T +YGEP ++ W ++ L W C+GDFNE L+ EK+ H
Sbjct: 541 EDDG-FWWRFTGVYGEPRSDKKDLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHA 599
Query: 577 QSQQSLNRFRSFVDSNALANIDIKGCKYTWLSN--PREGFVTREKLDRVLSNWSWRSLYP 634
++Q ++RFR +D +L+N+ G +TW +N R+G++ RE+LDR +++ W +P
Sbjct: 600 KAQSCMDRFRQTLDCCSLSNLGFTGDPFTWRNNWCVRDGYI-RERLDRAVADSDWCCRFP 658
Query: 635 HALVVALPVVSSDHSPLILDPVPK-----HRSGRQFKYEAFWNEHKDCSKVVEDAWNTT- 688
V SDH P+I+ + RS F++EA W + C+ +VE+AW +
Sbjct: 659 SFRVRKGDPRHSDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSV 718
Query: 689 -PQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEM 747
P+G + + ++ L W K +K I+K K L + +
Sbjct: 719 GPRGGK----VMDAIREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASRE 774
Query: 748 AQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSW 807
A K ++ +L Q EL+W R+ W + GDRNT FFH +R+ RN+I +L+ G
Sbjct: 775 AVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEV 834
Query: 808 IEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAH 867
I + G + I++ ++ +F + + E L VPK + + +N++LM+ VT EEIK
Sbjct: 835 ITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALD 894
Query: 868 SMDSLKAP-GPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPS 926
S+ LKAP G DG+ LF+K W VG ++ V F + N+T+V L+PK+P+
Sbjct: 895 SIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPN 954
Query: 927 LEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIF 986
E RPIS CN +YKI SKV+ RLK L++II+P Q AF+ R+I DNIL+A+E+
Sbjct: 955 PERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELT 1014
Query: 987 HALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKY 1046
H L+ + R A+K MSKAYDRVEW FLEK +L GF WV +VM V V+Y+
Sbjct: 1015 HFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRI 1074
Query: 1047 KVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCIT 1106
KVNG + + P GLRQGDP+SPYLF + + S ++ A+ +G + IK+ + P I
Sbjct: 1075 KVNGEFTEQINPTGGLRQGDPISPYLFFICAEGFSTLLNAAEERGDLSVIKVCQNAPSIN 1134
Query: 1107 HLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTN 1166
HL FADDSL+ K + A +L+ + S + IN KSS+ S++I + K
Sbjct: 1135 HLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMG 1194
Query: 1167 IFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVI 1226
I YLGLP GRSK + +++KER+ +KI GWKE LL++AGK+VLIK+V
Sbjct: 1195 ALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRAGKDVLIKAVA 1254
Query: 1227 QSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFR 1285
Q+IP +AM+ KG C E+ SL+ RF+W+ ++ +H W L K++GG FR
Sbjct: 1255 QAIPAFAMSCFNLTKGLCDEITSLICRFFWAQQERENKMHWIAWEHLCSRKEKGGFFFR 1313
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 568 bits (1465), Expect = e-160
Identities = 301/883 (34%), Positives = 479/883 (54%), Gaps = 11/883 (1%)
Query: 458 METRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITE 517
+ET + +K+ +L + L F N P G +GGLAL W ++ ++ ++ I +T
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTF 249
Query: 518 KEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQ 577
K + +YG P + R LW ++ + W +GDFNE L EK G +
Sbjct: 250 NNKSF--YLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMR 307
Query: 578 SQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHAL 637
+ + FR+ V + ++ KG +++W+ R + LDRV N +W + +P+A
Sbjct: 308 EEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHTVKCCLDRVFINSAWTATFPYAE 366
Query: 638 VVALPVVSSDHSPLIL---DPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGEND 694
L SDH P+++ + P R + F+++ + ++V+ +W T +
Sbjct: 367 TEFLDFTGSDHKPVLVHFNESFP--RRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRST 424
Query: 695 WETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQI 754
+ ++ SC+ + + + + +++ I+KL++ L+ E ++D + Q + +
Sbjct: 425 --PITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAM-ESTRRVDRQLIPQLQESL 481
Query: 755 RQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGV 814
+ + EE++W +SR QW + GD+NT +FHA T R +NR++ + D G G + +
Sbjct: 482 AKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEI 541
Query: 815 MENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKA 874
+ D F IF + + + + +N L + +D EI + KA
Sbjct: 542 GNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKA 601
Query: 875 PGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYR 934
PGPDGL F+K W++VG +V V FF TS + P IN T + ++PKI + + YR
Sbjct: 602 PGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYR 661
Query: 935 PISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGR 994
PI+ CN LYK+ISK +V RLK LN I++ +Q+AFI R+I DN++IAHE+ H+L+ R R
Sbjct: 662 PIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKR 721
Query: 995 EHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSR 1054
K ++A+K D+SKAYDRVEW+FLE + +GFC W+ +M V+ V Y +NG
Sbjct: 722 VSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHG 781
Query: 1055 KYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDS 1114
P RG+RQGDPLSPYLF+L D+LSH+I + G ++G+++ P ITHL FADDS
Sbjct: 782 YITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDS 841
Query: 1115 LVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWE 1174
L F +A + + + + S Q+IN KS ++ + ++++ I +IP
Sbjct: 842 LFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQG 901
Query: 1175 EPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAM 1234
G YLGLP +GR K +I +R+K++ + W L+ AGKE+++KSV ++P YAM
Sbjct: 902 GGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAM 961
Query: 1235 AVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAH 1294
+ PKG E++SL+ FWW RGI W L SKKEGG+GFR+ N A
Sbjct: 962 SCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDAL 1021
Query: 1295 MTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMW 1337
+ KQAWR+ P++L A+VMKA YF D S LDA + S+ W
Sbjct: 1022 LAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW 1064
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 566 bits (1458), Expect = e-159
Identities = 322/909 (35%), Positives = 488/909 (53%), Gaps = 11/909 (1%)
Query: 432 RGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGL 491
+G+G T +L + K +LFL+ET + I L L F N P G +GGL
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 492 ALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPL 551
AL W + L + +I V I+ I + +YG P + R +LW L
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINN--INFYLSRVYGHPCQSERHSLWTHFENLSKT 487
Query: 552 AQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPR 611
PW +GDFNE L +EK G + + + FR+ V + L +I G +++W+ R
Sbjct: 488 RNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-R 546
Query: 612 EGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILD-PVPKHRSGRQFKYEAF 670
+ LDR N L+P A + L SDH PL L + R R F+++
Sbjct: 547 HSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKR 606
Query: 671 WNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKAR 730
E V+ WN G+ + L ++V++C+ + K + + + I +L+A
Sbjct: 607 LLEVPHFKTYVKAGWNKAINGQR--KHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAA 664
Query: 731 LSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQ 790
L + + + + ++ + ++ +R EE +W +SR QW + GDRNT FFHA T
Sbjct: 665 LDKAMSSVN-RTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKT 723
Query: 791 RRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSE-QVTQIQECLSCVPKLIPTDL 849
R NR+ +KD G G + + + + F +++S + I + P ++ +
Sbjct: 724 RFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKP-IVTEQI 782
Query: 850 NNKLMETVTDEEI-KVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTST 908
N+ L + ++D EI + H D KAPGPDGL F+K+ W +VGP+V V FF TS
Sbjct: 783 NDDLTKDLSDLEIYNAICHIGDD-KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSY 841
Query: 909 LSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSA 968
+ IN T + ++PKI + E + YRPI+ CN LYKIISK +V RLKG L+ I++ +Q+A
Sbjct: 842 MKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAA 901
Query: 969 FIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFC 1028
FI RL+ DN++IAHE+ H+L+ R R + ++A+K D+SKAYDRVEW FLE + +GF
Sbjct: 902 FIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFS 961
Query: 1029 GPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAK 1088
W+ +M V+ V+Y VNG PQRG+RQGDPLSPYLF+L D+L+H+I
Sbjct: 962 ETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRV 1021
Query: 1089 NQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKS 1148
+G I+GI++ P +THL FADDSL F ++ + + + + S Q+IN SKS
Sbjct: 1022 AEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKS 1081
Query: 1149 SMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGW 1208
++ + + ++ NI I + G YLGLP +GR K +I ER+K++ + W
Sbjct: 1082 MITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSW 1141
Query: 1209 KEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLK 1268
L+ AGKE+++KSV S+P YAM+ P E+++L+ FWW N K R I
Sbjct: 1142 SAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWI 1201
Query: 1269 DWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDAT 1328
W L SKKEGG+GFR+ N A + KQ WR+ N P++L A++MKA YF + S LDA
Sbjct: 1202 AWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAK 1261
Query: 1329 PKPGDSWMW 1337
+ S+ W
Sbjct: 1262 RQRYQSYGW 1270
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 565 bits (1456), Expect = e-159
Identities = 322/908 (35%), Positives = 487/908 (53%), Gaps = 11/908 (1%)
Query: 433 GVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLA 492
G+G T +L + K +LFL+ET + I L L F N P G +GGLA
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLA 450
Query: 493 LFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLA 552
L W + L + +I V I+ I + +YG P + R +LW L
Sbjct: 451 LLWKDSVRLSNLYQDDRHIDVHISINN--INFYLSRVYGHPCQSERHSLWTHFENLSKTR 508
Query: 553 QGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPRE 612
PW +GDFNE L +EK G + + + FR+ V + L +I G +++W+ R
Sbjct: 509 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RH 567
Query: 613 GFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILD-PVPKHRSGRQFKYEAFW 671
+ LDR N L+P A + L SDH PL L + R R F+++
Sbjct: 568 SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRL 627
Query: 672 NEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARL 731
E V+ WN G+ + L ++V++C+ + K + + + I +L+A L
Sbjct: 628 LEVPHFKTYVKAGWNKAINGQR--KHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAAL 685
Query: 732 SSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQR 791
+ + + + ++ + ++ +R EE +W +SR QW + GDRNT FFHA T R
Sbjct: 686 DKAMSSVN-RTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTR 744
Query: 792 RGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSE-QVTQIQECLSCVPKLIPTDLN 850
NR+ +KD G G + + + + F +++S + I + P ++ +N
Sbjct: 745 FSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKP-IVTEQIN 803
Query: 851 NKLMETVTDEEI-KVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTL 909
+ L + ++D EI + H D KAPGPDGL F+K+ W +VGP+V V FF TS +
Sbjct: 804 DDLTKDLSDLEIYNAICHIGDD-KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYM 862
Query: 910 SPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAF 969
IN T + ++PKI + E + YRPI+ CN LYKIISK +V RLKG L+ I++ +Q+AF
Sbjct: 863 KQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAF 922
Query: 970 IKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCG 1029
I RL+ DN++IAHE+ H+L+ R R + ++A+K D+SKAYDRVEW FLE + +GF
Sbjct: 923 IPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSE 982
Query: 1030 PWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKN 1089
W+ +M V+ V+Y VNG PQRG+RQGDPLSPYLF+L D+L+H+I
Sbjct: 983 TWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVA 1042
Query: 1090 QGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSS 1149
+G I+GI++ P +THL FADDSL F ++ + + + + S Q+IN SKS
Sbjct: 1043 EGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSM 1102
Query: 1150 MSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWK 1209
++ + + ++ NI I + G YLGLP +GR K +I ER+K++ + W
Sbjct: 1103 ITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWS 1162
Query: 1210 EVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKD 1269
L+ AGKE+++KSV S+P YAM+ P E+++L+ FWW N K R I
Sbjct: 1163 AKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIA 1222
Query: 1270 WHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATP 1329
W L SKKEGG+GFR+ N A + KQ WR+ N P++L A++MKA YF + S LDA
Sbjct: 1223 WKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKR 1282
Query: 1330 KPGDSWMW 1337
+ S+ W
Sbjct: 1283 QRYQSYGW 1290
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 555 bits (1429), Expect = e-156
Identities = 306/890 (34%), Positives = 485/890 (54%), Gaps = 10/890 (1%)
Query: 452 PSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYI 511
P ILFLMET+ ++ + ++ L + V+P G +GGLA+FW +E L +++N +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLM 66
Query: 512 HVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEK 571
+ ++ + KV + +YG P+ R LW+ ++ + WC +GDFN+ EK
Sbjct: 67 DLQVSSRNKVWFI--SCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEK 124
Query: 572 DGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRS 631
G +S S F + + ++ + G +TW N + +V + KLDR N +W S
Sbjct: 125 LGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWV-QCKLDRCFGNPAWFS 183
Query: 632 LYPHALVVALPVVSSDHSPLILDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQ 690
++P+A L SDH P+++ + R QF+Y+ ++ C +V+ +WN+
Sbjct: 184 IFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDDPYCIEVIHRSWNSA-M 242
Query: 691 GENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKID-WNEMAQ 749
+ + + ++ C+ ++ W+ + + A I++L+ L + E +I W +
Sbjct: 243 SQGTHSSFFSLIE-CRRAISVWKHSSDTNAQSRIKRLRKDLDA---EKSIQIPCWPRIEY 298
Query: 750 FKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIE 809
K Q+ + EELFW +SR +W GD+NT FFHAT R +N + L D
Sbjct: 299 IKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFT 358
Query: 810 GQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSM 869
+ + F+ +F S + L + + +++N+ L++ VT+ E+ S+
Sbjct: 359 RNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSI 418
Query: 870 DSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEM 929
+ APGPDG LFF+ HW++V ++ + + FF T L N T + L+PKI S +
Sbjct: 419 NKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQR 478
Query: 930 ANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHAL 989
+ RPIS C+ LYKIISK++ RLK L I++ QSAF+ RLI DNIL+AHE+ H+L
Sbjct: 479 MSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSL 538
Query: 990 QHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVN 1049
+ R K+H+A K DMSKAYDRVEW FLE + A GF W+S +MN V VSY +N
Sbjct: 539 RTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLIN 598
Query: 1050 GYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLF 1109
G IP RG+RQGDPLSP LFVL + L H++ +A+ G I GI+ + HL
Sbjct: 599 GQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLL 658
Query: 1110 FADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQ 1169
FADD+L+ KAT+QE +Q L+ + S Q IN +KS+++ K++ +K + +
Sbjct: 659 FADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSG 718
Query: 1170 IPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSI 1229
I G YLGLP SK +IKE+++ ++ GW L+Q GKEVL+KS+ ++
Sbjct: 719 ISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALAL 778
Query: 1230 PTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHL 1289
P Y M+ PK C++L +++ FWW++ ++ R IH W LT K +GG GF++
Sbjct: 779 PVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQC 838
Query: 1290 QNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
N A + KQAWR+ +L ++V ++ YF +S FL AT S+ WR+
Sbjct: 839 FNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRS 888
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 537 bits (1384), Expect = e-150
Identities = 316/932 (33%), Positives = 484/932 (51%), Gaps = 50/932 (5%)
Query: 458 METRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITE 517
MET+ + I + + +++ F + P G +GGLAL+W + VEIL++ N+I
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFI------ 54
Query: 518 KEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQ 577
R WD IS L W GDFN+ L EK G +
Sbjct: 55 ------------------DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLR 96
Query: 578 SQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHAL 637
+ FRSFV N L +I+ G +W F+ + +LDR L N SW L+P +
Sbjct: 97 WEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFI-KSRLDRALGNCSWSELFPMSK 155
Query: 638 VVALPVVSSDHSPLILD-PVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWE 696
L SDH PL+ P + + F+++ E ++ +V++ W Q +
Sbjct: 156 CEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQ-----D 210
Query: 697 TLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQ 756
++ K+ C+ + KW K S + K I+K + L S + D D + + ++
Sbjct: 211 SVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIP--DPSLIGSITQELEA 268
Query: 757 LWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVME 816
+RQEELFW SR+QW GDRN +FHATT RR N + ++DG+G +E +
Sbjct: 269 AYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIAS 328
Query: 817 NITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPG 876
I+ +FQ IF + + +Q + +I + N +L++ + EIK S+ + KAPG
Sbjct: 329 TISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPG 388
Query: 877 PDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPI 936
PDG + FF +W+++ +V + SFF S LSP +NET V L+PKI + + YRPI
Sbjct: 389 PDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPI 448
Query: 937 SCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREH 996
+ CN YKI++K++ RL+ L+++I+ +QSAF+ R I DN+LI HEI H L+ G +
Sbjct: 449 ALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKK 508
Query: 997 KDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKY 1056
+AIK DMSKAYDR++W FL++ L+ GF W+ VM V VSY + +NG
Sbjct: 509 YCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSV 568
Query: 1057 IPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLV 1116
+P RGLRQGDPLSPYLF+L +VLS + +A+ +G + GI+++ +P + HL FADD++
Sbjct: 569 VPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMF 628
Query: 1117 FAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEP 1176
F K +L + AS Q IN +KS+++ S P +K ++ +I
Sbjct: 629 FCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGI 688
Query: 1177 GHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAV 1236
G YLGLP +GR K + I +R++++ W L+ AGK++L+K+V+ S+P+YAM
Sbjct: 689 GKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMC 748
Query: 1237 TPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMT 1296
P CK++ S++ RFWW + R + W LT EGG+GFRE
Sbjct: 749 FKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------A 801
Query: 1297 KQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPG-DSWMWRANQRQELLDRQRNLGCR 1355
K +WRI PH+L+++V+ Y SSF+D + P S WR L R
Sbjct: 802 KLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRG----ILAGRDLLRKGL 857
Query: 1356 GWSYHKLMGGQMACLR*LTQSMGKRKTPKAPI 1387
GWS GQ + T++ +P+ PI
Sbjct: 858 GWSI-----GQGDSINVWTEAWLSPSSPQTPI 884
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 537 bits (1383), Expect = e-150
Identities = 291/878 (33%), Positives = 464/878 (52%), Gaps = 9/878 (1%)
Query: 466 KIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAE 525
K+ RL+ L F V G +GGLAL+W++ +V++ D N+ YI + +
Sbjct: 772 KMSRLRGRLGLRGFTGVSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWH 831
Query: 526 YTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRF 585
TF+YGEP + R +W + + + PW +GDFNET++Q E P+ + + F
Sbjct: 832 VTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDF 891
Query: 586 RSFVDSNALANIDIKGCKYTWLSNPREGFVT-REKLDRVLSNWSWRSLYPHALVVALPVV 644
R + L ++ KG +T+ N REG+ + +LDRV+++ WR +Y A VV L
Sbjct: 892 RDVLQDCELHDLGFKGVPHTY-DNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSP 950
Query: 645 SSDHSPLILDPV---PKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNK 701
SDH P++L+ V P + YE W + ++V+E+AW + + D +
Sbjct: 951 CSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGE-KADLGDINKA 1009
Query: 702 VKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQE 761
+ L W + +E+EK + +L+ + + D + + +L +E
Sbjct: 1010 LAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESN---ADRTVIRNATDHMNELLYRE 1066
Query: 762 ELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDH 821
E+ W RSR+ W + DRNT FFH+ + R +N+I +L+D + + T++
Sbjct: 1067 EMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEY 1126
Query: 822 FQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLN 881
FQ ++ ++ + + + + +N KL E T++EI + LK+PGPDG
Sbjct: 1127 FQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFP 1186
Query: 882 GLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNY 941
F++ +W + ++ V FF T + +N+T + L+PK +RPIS CN
Sbjct: 1187 ARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNV 1246
Query: 942 LYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLA 1001
+YK++SK +V RL+ L+D+++ QSAF++ R+I DN L+A E FHA+Q + + A
Sbjct: 1247 VYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACA 1306
Query: 1002 IKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRG 1061
KLD+SKAYDRV+W FLE A+ GF WV+ +M V V Y K NG L + + P RG
Sbjct: 1307 YKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRG 1366
Query: 1062 LRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKAT 1121
LRQGDPL P+LF+ V D LS ++ + Q + K+ + P I+HL FADD+L+F KA
Sbjct: 1367 LRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAH 1426
Query: 1122 QQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLG 1181
Q+EA ++L++++ + Q IN +K S+ + ++ I Q+ YLG
Sbjct: 1427 QREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLG 1486
Query: 1182 LPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPK 1241
P GR ++ ++ +++ W E L+ GKEVLIK+VIQ+IP Y M + P+
Sbjct: 1487 FPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPE 1546
Query: 1242 GFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWR 1301
+L L FWW + R H K W SLT K GG+GFR++ L N A + +QAWR
Sbjct: 1547 SVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWR 1606
Query: 1302 IHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+ P +L A+V+KA YFP S +D + S WR+
Sbjct: 1607 LITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRS 1644
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 533 bits (1374), Expect = e-149
Identities = 300/886 (33%), Positives = 482/886 (53%), Gaps = 14/886 (1%)
Query: 458 METRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITE 517
MET R+ + ++ L + + V+P+G GGLAL W V++ ++N + +
Sbjct: 1 METMHSRDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQV-- 58
Query: 518 KEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQ 577
+ + + +YG+P R +R W+ ISR+ + WC GDFN+ L+ EK+G +
Sbjct: 59 QFGAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRR 118
Query: 578 SQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHAL 637
S F + L + G +TW + ++ + +LDR N W +P +
Sbjct: 119 SDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI-QCRLDRAFGNKEWFCFFPVSN 177
Query: 638 VVALPVVSSDHSPLILDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWE 696
L SDH P+++ + S R QF+++ + +D + + W+ G N
Sbjct: 178 QTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-- 235
Query: 697 TLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDW---NEMAQFKAQ 753
++ +++++C+ L+ W+K + +I +L+A L E + W ++ K
Sbjct: 236 SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL-----EKEQSLVWPIFQRVSVLKKD 290
Query: 754 IRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEG 813
+ + +R+EE +W +SR +W + G+RN+ +FHA Q R R RI +LKD G+ +
Sbjct: 291 LAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAA 350
Query: 814 VMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLK 873
E +F +FKS + + S + + +N L+ V+ +EIK S+
Sbjct: 351 KGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPAS 410
Query: 874 APGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQY 933
APGPDG++ LFF+ +W+ VG +V S V FF + N T + L+PK
Sbjct: 411 APGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDL 470
Query: 934 RPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRG 993
RPIS C+ LYKIISK++ RL+ L +I++ QSAF+ +RLI DNIL+AHE+ H+L+
Sbjct: 471 RPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHP 530
Query: 994 REHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLS 1053
R + +A+K DMSKAYDRVEW +L LL+ GF WV+ +M V V+Y +N
Sbjct: 531 RISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPF 590
Query: 1054 RKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADD 1113
I QRGLRQGDPLSP+LFVL + L+H++ +A+ +G ++GI+ S + P + HL FADD
Sbjct: 591 GLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADD 650
Query: 1114 SLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTW 1173
SL KA+++++ ++L + +A+ Q IN +KSS++ + + LK + I T
Sbjct: 651 SLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTE 710
Query: 1174 EEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYA 1233
G YLGLP + SK L ++K+R+KEK+ W L+Q GKEVL+KSV ++P +A
Sbjct: 711 GGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFA 770
Query: 1234 MAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLA 1293
M+ P C+ L+S +A FWW + SR IH + W L K GG+GFR+ N A
Sbjct: 771 MSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQA 830
Query: 1294 HMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+ KQAWR+ + P L+++++K+ YF + FLDA S+ WR+
Sbjct: 831 LLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRS 876
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 532 bits (1371), Expect = e-149
Identities = 309/922 (33%), Positives = 477/922 (51%), Gaps = 16/922 (1%)
Query: 424 MRLISWNCRGVGAST--TARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFC 481
M L+SWNC+G+G S T L E+ P +LFLMET+ N + L+ L + F
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 482 VDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFI---YGEPLRQRR 538
V+PIG +GGLALFW K + I +++N I I G+ ++ YG P +
Sbjct: 61 VNPIGLSGGLALFWKKGVDIVIKYADKNLIDFQIQ-----FGSHEFYVSCVYGNPAFSDK 115
Query: 539 QALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANID 598
+W+ I+R+ + PWC LGDFN L+ EK G + S F +DS + +
Sbjct: 116 HLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELP 175
Query: 599 IKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPK 658
G +TW E ++ + +LDR N +W +P + L SDH P+++
Sbjct: 176 SIGNPFTWGGKTNEMWI-QSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKT 234
Query: 659 HRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTF 717
R F+++ + + + AWN + + EN + +K+K C+ L++W+K
Sbjct: 235 KEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNEN--LLVLDKLKHCRSALSRWKKENN 292
Query: 718 SRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWG 777
+ I + +A L + + D + K + + EE+FWS +SR +W G
Sbjct: 293 INSSTRITQARAALELEQSSGFPRADL--VFSLKNDLCKANHDEEVFWSQKSRAKWMHSG 350
Query: 778 DRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQEC 837
D+NT FFHA+ RG+ I +L D G + + + +F +FKS + +
Sbjct: 351 DKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDL 410
Query: 838 LSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVC 897
+ +NN L+ V+ EI+ ++ S APG DG G FF+ +W+++ +V
Sbjct: 411 FEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVT 470
Query: 898 SVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGE 957
+ +FF N T + L+PK + RPIS C+ LYKIISK++V RL+
Sbjct: 471 KEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPF 530
Query: 958 LNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEF 1017
L D+++PNQSAF+ +RLI DNILIAHE+ H L+ K +AIK +MSKA+DRVEW +
Sbjct: 531 LPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNY 590
Query: 1018 LEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVM 1077
+ L A GF WV +M ++ VSY +N +P RGLRQGDPLSP+LFVL
Sbjct: 591 VRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCS 650
Query: 1078 DVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSS 1137
+ L+H++ +A+ QG + GI+ S + P I HL FADDSL KA ++E + +
Sbjct: 651 EGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGD 710
Query: 1138 ASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWI 1197
+ QRIN KSS++ + K + I YLGLP + SK + L +I
Sbjct: 711 VTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYI 770
Query: 1198 KERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWS 1257
K+R+K +++GW L+ GKE L+K+ ++ YAM+ K C + S ++ FWW+
Sbjct: 771 KDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWN 830
Query: 1258 NNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKAL 1317
+ R H + SK+ GG+GFR+ N A + KQAWR+ P++L A+ K+
Sbjct: 831 ALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSR 890
Query: 1318 YFPDSSFLDATPKPGDSWMWRA 1339
Y+ + FLDA K S+ WR+
Sbjct: 891 YYDEEDFLDAELKATPSYAWRS 912
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 529 bits (1363), Expect = e-148
Identities = 297/880 (33%), Positives = 479/880 (53%), Gaps = 14/880 (1%)
Query: 464 RNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIG 523
R+ + ++ L + + V+P+G GGLAL W V++ ++N + + + +
Sbjct: 4 RDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQV--QFGAVN 61
Query: 524 AEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLN 583
+ +YG+P R +R W+ ISR+ + WC GDFN+ L+ EK+G +S
Sbjct: 62 FCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCK 121
Query: 584 RFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPV 643
F + L + G +TW + ++ + +LDR N W +P + L
Sbjct: 122 AFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI-QCRLDRAFGNKEWFCFFPVSNQTFLDF 180
Query: 644 VSSDHSPLILDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKV 702
SDH P+++ + S R QF+++ + +D + + W+ G N ++ +++
Sbjct: 181 RGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI--SVADRL 238
Query: 703 KSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDW---NEMAQFKAQIRQLWR 759
++C+ L+ W+K + +I +L+A L E + W ++ K + + +R
Sbjct: 239 RACRKSLSSWKKQNNLNSLDKINQLEAAL-----EKEQSLVWPIFQRVSVLKKDLAKAYR 293
Query: 760 QEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENIT 819
+EE +W +SR +W + G+RN+ +FHA Q R R RI +LKD G+ + E
Sbjct: 294 EEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAA 353
Query: 820 DHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDG 879
+F +FKS + + S + + +N L+ V+ +EIK S+ APGPDG
Sbjct: 354 AYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDG 413
Query: 880 LNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCC 939
++ LFF+ +W+ VG +V S V FF + N T + L+PK RPIS C
Sbjct: 414 MSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLC 473
Query: 940 NYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDH 999
+ LYKIISK++ RL+ L +I++ QSAF+ +RLI DNIL+AHE+ H+L+ R +
Sbjct: 474 SVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEF 533
Query: 1000 LAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQ 1059
+A+K DMSKAYDRVEW +L LL+ GF WV+ +M V V+Y +N I Q
Sbjct: 534 MAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQ 593
Query: 1060 RGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAK 1119
RGLRQGDPLSP+LFVL + L+H++ +A+ +G ++GI+ S + P + HL FADDSL K
Sbjct: 594 RGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCK 653
Query: 1120 ATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHY 1179
A+++++ ++L + +A+ Q IN +KSS++ + + LK + I T G Y
Sbjct: 654 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 713
Query: 1180 LGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPF 1239
LGLP + SK L ++K+R+KEK+ W L+Q GKEVL+KSV ++P +AM+
Sbjct: 714 LGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKL 773
Query: 1240 PKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQA 1299
P C+ L+S +A FWW + SR IH + W L K GG+GFR+ N A + KQA
Sbjct: 774 PITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQA 833
Query: 1300 WRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
WR+ + P L+++++K+ YF + FLDA S+ WR+
Sbjct: 834 WRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRS 873
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 505 bits (1300), Expect = e-141
Identities = 280/750 (37%), Positives = 423/750 (56%), Gaps = 12/750 (1%)
Query: 572 DGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPR-EGFVTREKLDRVLSNWSWR 630
+G P+S+ + +FR ++ L ++ G +TW ++ +E+LDR ++N +WR
Sbjct: 487 EGGAPRSESCMAKFRQALEDCQLHDLGFVGDAFTWRNHHHLASNYIKERLDRAVANGAWR 546
Query: 631 SLYPHALVVALPVVSSDHSPLILDP--VPKHRSGRQF----KYEAFWNEHKDCSKVVEDA 684
+ +P V+ SDH +I++ K + G+ K+EA W E ++C VE+A
Sbjct: 547 ARFPLVRVINGDPRHSDHRSVIVETGATEKQQWGQPLEIMQKFEARWLEEEECQARVEEA 606
Query: 685 W-NTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKID 743
W N G+ +Q++V L W + K ++ L+ L E
Sbjct: 607 WENALEGGQTRLMEIQSRVLK---ELWAWDRTVLGELKKRVKNLRKELEKCRREPISNRQ 663
Query: 744 WNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDG 803
N + ++ +L Q+ ++W R+ W GDRNT FFHA +++ RN I +L+DG
Sbjct: 664 VNREHLLRYKLERLLDQQHIYWKQRAHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDG 723
Query: 804 TGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIK 863
G + G + + I++ +Q +F+S +Q+ L CV + ++ L EE+
Sbjct: 724 HGGLVAGNQ-LKSFISNQYQQLFRSNGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVW 782
Query: 864 VVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPK 923
V M LKAPG DG+ +F+K ++ G +V V + N + N+T+V L+PK
Sbjct: 783 VALKDMGDLKAPGADGIPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPK 842
Query: 924 IPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAH 983
+ RPIS CN YK+ISKVIV RLK L +II+P+QSAF+ RLI N+L+A+
Sbjct: 843 TKQPDTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAY 902
Query: 984 EIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVS 1043
E+ H L R + AIKLDMSKAYDRVEW+FL +L GF WV+LVM V V+
Sbjct: 903 ELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVT 962
Query: 1044 YKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTP 1103
Y+ K+NG S + PQRGLRQGDPLSPYLF++ + LS ++ +A+ G I+GIK+ TP
Sbjct: 963 YRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTP 1022
Query: 1104 CITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQ 1163
I HLFFADDSLV +A Q +A ++LN + AS Q IN KSS+ S + + +
Sbjct: 1023 RINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRME 1082
Query: 1164 MTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIK 1223
+ + I + YLGLP G+S+ +A +IK ++ +I GW+E LL++AGKE+L+K
Sbjct: 1083 VRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVK 1142
Query: 1224 SVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMG 1283
+V Q+IPTYAM+ KG C E++S+++++WWS N K IH W +T KK GG G
Sbjct: 1143 AVAQAIPTYAMSCFDLTKGLCDEINSMISKWWWSQNDKENKIHWLSWEKMTLPKKLGGPG 1202
Query: 1284 FREFHLQNLAHMTKQAWRIHNTPHTLVAQV 1313
FR+ HL N+A + +QAWR+ +L QV
Sbjct: 1203 FRDLHLFNMAMLARQAWRLLLNVDSLCGQV 1232
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 492 bits (1266), Expect = e-137
Identities = 265/698 (37%), Positives = 389/698 (54%), Gaps = 5/698 (0%)
Query: 643 VVSSDHSPLILDPVPKHRSGRQ-FKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNK 701
+++SDHSP+I K G+Q F+++ W + + WN G + + ++ K
Sbjct: 1 MLASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLD-SGFREGQFVE-K 58
Query: 702 VKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQE 761
+ +C+ ++KW+K + IE LKA L +D + E+ + ++++ +R E
Sbjct: 59 LTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSRE--EITELTLRLKEAYRDE 116
Query: 762 ELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDH 821
E +W +SR W + GD N+ FFHA T QRR RNRI L D G W + + +
Sbjct: 117 EQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSY 176
Query: 822 FQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLN 881
FQ +F + E L V LI +N+ L T+ E++ + KAPGPDG+
Sbjct: 177 FQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMT 236
Query: 882 GLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNY 941
LFF+ W ++ ++ S+V+SF +N T + L+PK + RPIS CN
Sbjct: 237 ALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNV 296
Query: 942 LYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLA 1001
YK+ISK++ RLK L ++I+ QSAF+ RLI DNILIA E+FH L+ +A
Sbjct: 297 GYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMA 356
Query: 1002 IKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRG 1061
IK DMSKAYD+VEW F+E L GFC W+S +M + V YK +NG IP+RG
Sbjct: 357 IKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERG 416
Query: 1062 LRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKAT 1121
LRQGDPLSPYLF+L +VL I +A+ Q I GIK++ +P ++HL FADDSL F KA
Sbjct: 417 LRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKAN 476
Query: 1122 QQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLG 1181
+++ +++L + S S Q+IN SKSS+ + +K + I I G YLG
Sbjct: 477 KEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLG 536
Query: 1182 LPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPK 1241
LP G SKT+ +++++R++ +I GW L++ GKEV+IKSV ++P Y M+ PK
Sbjct: 537 LPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPK 596
Query: 1242 GFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWR 1301
+L S VA+FWWS+N SRG+H W L SK +GG+GFR N A + KQ WR
Sbjct: 597 AITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWR 656
Query: 1302 IHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+ P +L A+V K YF S+ LD+ S+ WR+
Sbjct: 657 LITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRS 694
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 475 bits (1222), Expect = e-132
Identities = 261/779 (33%), Positives = 413/779 (52%), Gaps = 11/779 (1%)
Query: 563 NETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDR 622
NE L EK G P+ Q S FRSF+ N L ++ G ++W + FV R++LDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 623 VLSNWSWRSLYPHALVVALPVVSSDHSPLIL--DPVPKHRSGRQFKYEAFWNEHKDCSKV 680
+SN SW +P L SDH PL++ D R G QF+++ ++ + +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRG-QFRFDNRLRDNDVVNAL 153
Query: 681 VEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHH 740
+++ W ++ K+ C+ + W ++ + + IEK + L D
Sbjct: 154 IQETWTNAGDA-----SVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPP 208
Query: 741 KIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRL 800
+ A + ++ EE FW RSR+ W GDRNT +FHA T RR +NR+ +
Sbjct: 209 NP--TTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVM 266
Query: 801 KDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDE 860
+D G + + + I+ +FQ IF SE + ++ N+ L DE
Sbjct: 267 EDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDE 326
Query: 861 EIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVAL 920
E+K S+++ KAPGPDG F+ ++W+++ +V + FF + +NET + L
Sbjct: 327 EVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRL 386
Query: 921 VPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNIL 980
+PK YRPI+ CN YKI++K++ R++ L +I+ NQSAF+ R+I DN+L
Sbjct: 387 IPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVL 446
Query: 981 IAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVR 1040
I HE+ H L+ + +A+K DMSKAYDRVEW+FL+K L +GF W+ V+ V
Sbjct: 447 ITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVT 506
Query: 1041 GVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSP 1100
VSY + +NG K +P RGLRQGDPLSP LF+L +VLS + +A+ + G+++S
Sbjct: 507 SVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSI 566
Query: 1101 STPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLL 1160
+ P + HL FADD++ F+K+ + ++L+ + AS Q IN KSS++ S P +
Sbjct: 567 NGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSV 626
Query: 1161 KTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEV 1220
K Q+ I +I G YLGLP +GR K I +++++K W L+QAGK+V
Sbjct: 627 KGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQV 686
Query: 1221 LIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEG 1280
++K+V+ S+P Y+M+ P C+++ SL+ RFWW R W LT K G
Sbjct: 687 MLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAG 746
Query: 1281 GMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
G+GFR+ N + + K WR+ N+P +L+++++ Y SSF++ S WR+
Sbjct: 747 GLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRS 805
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 468 bits (1205), Expect = e-130
Identities = 272/869 (31%), Positives = 454/869 (51%), Gaps = 23/869 (2%)
Query: 474 LHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEP 533
L + F ++P+G +GGLA+FW ++ L ++N + + +++ +K + +YG P
Sbjct: 14 LGYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKVSQGKK--SWFVSCVYGNP 71
Query: 534 LRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNA 593
+ R L D +S + WC +GDFN+ L K G + S F++ + +
Sbjct: 72 VLHLRYLLLDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCD 131
Query: 594 LANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLIL 653
+ + G +TW + ++ + KLDR N W +++ ++ L + S H P+++
Sbjct: 132 MHQMGSSGNSFTWGGTRNDQWI-QCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLV 190
Query: 654 DPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKW 712
+ V R QF Y+ + E C+ +W G +D + ++ C+ ++ W
Sbjct: 191 NFVNDQEVFRGQFCYDKRFAEDPQCAASTLSSW--IGNGISDVSSSMLRMVKCRKAISGW 248
Query: 713 QKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQ 772
+K + A I +L++ L ++ + W+ ++ + Q+ +R+EE FW +S+ +
Sbjct: 249 KKNSDFNAQNRILRLRSELDEEKSKQYPC--WSRISVIQTQLGVAFREEESFWRLKSKDK 306
Query: 773 WAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGS--WIEGQEGVMENITDHFQLIFKSEQ 830
W GDRN+ FF A R +N + L D G+ + ++G + ++ +F+ +F S
Sbjct: 307 WLFGGDRNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASV--YFENLFMSSY 364
Query: 831 VTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWN 890
Q L + ++N +L + VT+ EI S++ AP + L +
Sbjct: 365 PANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP--EKLECCQGSDYIE 422
Query: 891 VVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVI 950
++G FF T L N T + L+PK + + + RPIS C+ LYKIISK++
Sbjct: 423 ILG---------FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKIL 473
Query: 951 VARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAY 1010
+LK L I++P+QSAF +RLI DNILIAHEI H+L+ + K+ + K DMSKAY
Sbjct: 474 SFKLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAY 533
Query: 1011 DRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSP 1070
DRVEW FL++ L+A GF W+S +M V V+Y +NG P+RG+RQGDP+SP
Sbjct: 534 DRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISP 593
Query: 1071 YLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQ 1130
+LFVL + L H++ QA+N + GI+ + S P + HL F DD+ + +AT+ + +
Sbjct: 594 FLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMML 653
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSK 1190
L+ + S Q IN KSS++ + K + N I G YLGLP SK
Sbjct: 654 CLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSK 713
Query: 1191 TRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSL 1250
+IKE+++ ++GW + L+Q GKE+L+KS+ ++P Y M PKG C +L S+
Sbjct: 714 QDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSV 773
Query: 1251 VARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLV 1310
+ FWW++ + S IH LT K GG GF++ N A + KQAWR+ + ++V
Sbjct: 774 MMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIV 833
Query: 1311 AQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+Q+ K+ YF ++ FL+A S+ WR+
Sbjct: 834 SQIFKSRYFMNTDFLNARQGTRPSYTWRS 862
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,202,243,161
Number of Sequences: 2540612
Number of extensions: 142691736
Number of successful extensions: 335293
Number of sequences better than 10.0: 1232
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 331519
Number of HSP's gapped (non-prelim): 1886
length of query: 1797
length of database: 863,360,394
effective HSP length: 143
effective length of query: 1654
effective length of database: 500,052,878
effective search space: 827087460212
effective search space used: 827087460212
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0304.11