BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0303.2
(291 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAS55772.2| hypothetical protein [Oryza sativa (japonica cult... 87 6e-16
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 86 2e-15
emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultiva... 84 4e-15
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 83 1e-14
ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (j... 78 3e-13
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 77 4e-13
ref|XP_470963.1| OSJNBa0094O15.6 [Oryza sativa (japonica cultiva... 77 4e-13
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 77 4e-13
gb|AAP52472.1| putative non-LTR retroelement reverse transcripta... 77 6e-13
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 75 2e-12
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 75 2e-12
ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cu... 75 2e-12
ref|NP_910231.1| Similar to Arabidopsis thaliana chromosome II B... 75 3e-12
gb|AAX96297.1| retrotransposon protein, putative, unclassified [... 74 4e-12
ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultiva... 74 4e-12
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 74 4e-12
ref|NP_908456.1| unnamed protein product [Oryza sativa (japonica... 74 6e-12
ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cu... 74 6e-12
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 73 8e-12
gb|AAP51826.1| putative retroelement [Oryza sativa (japonica cul... 72 1e-11
>gb|AAS55772.2| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 493
Score = 87.0 bits (214), Expect = 6e-16
Identities = 74/267 (27%), Positives = 113/267 (41%), Gaps = 21/267 (7%)
Query: 1 TKILKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRR 60
T L +G+ + FWHD WL L+ + LY L+ +K N + E HW RR
Sbjct: 225 TITLGNGNKSKFWHDRWLNGSPLKELYPSLYQLATRK----NRSVAQEIQGNHWLKQMRR 280
Query: 61 PLVGRELEWEKGLLDALGTVQLTKGVPD--AWVWMPSNVGIYSVNSAYHFLQEPTLPDTD 118
++ L + V+L +G+ D AW W P+ G YS NSAY + D
Sbjct: 281 MNTTTQVREFILLWHQIQQVELQEGIDDAIAWRWTPN--GSYSANSAYRIQFVGGIQDNR 338
Query: 119 EALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHL 178
W + + K F W ++ + + + L R S C LC ET HL
Sbjct: 339 SDF--FWKAKVENKCKFFGWLMIHRKILTADKLQLRGWDNSHI---CPLCGVEPETATHL 393
Query: 179 LFSCTFSLSVWQGCLHWLGCSFIQPSSAR---DHL---SHFRFGINKLQQRLALSIWLAV 232
L C F+ VW+ WL P ++ D L S R + K Q+R +++
Sbjct: 394 LMECAFAKQVWRQI--WLKAGLHMPVASTFDGDMLRWWSTCRREMAKEQRRNFDGLFICT 451
Query: 233 IWSVWLARNEVVFRGGAANIYSVLELV 259
W +WL RN +F G + + V++ +
Sbjct: 452 AWGIWLQRNARIFNGTYSTVMQVVDSI 478
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 85.5 bits (210), Expect = 2e-15
Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 18/248 (7%)
Query: 1 TKILKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRR 60
TKI+ +G+ T FW D WLG L F LY + K + L G KF RR
Sbjct: 728 TKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITKRITIADLN--RKGIDCMKF--RR 783
Query: 61 PLVGREL-EWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
L G +L +W K ++++ + L + D W S G ++V S Y L+ L T
Sbjct: 784 DLHGDKLRDWRK-IVNSWEGLNLVENCKDKLWWTLSKDGKFTVRSFYRALK---LQQTSF 839
Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
IW P ++ F W ++ +++NLLKR D +C C D VET HL
Sbjct: 840 PNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRG--WRKGDNKCQFC-DKVETVQHLF 896
Query: 180 FSCTFSLSVWQGCLHWLGCSF-IQP-SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVW 237
F C + +W + + C+ ++P S +D + ++K + L + AV+WS+W
Sbjct: 897 FDCPLARLIW----NIIACALNVKPVLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIW 952
Query: 238 LARNEVVF 245
RN+ F
Sbjct: 953 KCRNKACF 960
>emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultivar-group)]
Length = 436
Score = 84.3 bits (207), Expect = 4e-15
Identities = 68/280 (24%), Positives = 121/280 (42%), Gaps = 15/280 (5%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
TKI + G++T FW W+ + +Y +S+ + ++ E W ++
Sbjct: 154 TKITVGDGNMTRFWDSTWIDGRRPKDLMPLVYAISKNRKKSLHQ--GKEDDTWVDDLIFD 211
Query: 60 R--PLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDT 117
+ +E L +A+ VQL PD VW + G Y+ +SAYH Q P T
Sbjct: 212 AGSTITVNLVEQLVRLWEAVRNVQLVSEEPDQIVWKFTGNGHYTASSAYH-AQCLEAPST 270
Query: 118 DEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFH 177
+ + IW ++AP K + W ++ +R + + L R + C LC ETG H
Sbjct: 271 NLNSL-IWKAWAPGKCKFYVWLIIQNRVWTSDRLAIRGWQNN---GHCPLCRCEAETGLH 326
Query: 178 LLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF-----GINKLQQRLALSIWLAV 232
L+ +C ++ +W W+G ++PS + S ++ + ++ S+ L V
Sbjct: 327 LVATCRYTKRIWHHVAGWVGYHQLEPSQWEEAQSVCQWWESLANTPNIPKKGLRSLILLV 386
Query: 233 IWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
+W +W RN +F + +L +K + W A K
Sbjct: 387 VWEIWKERNRRIFDNKEMAVGLLLAKIKEEASVWALAGAK 426
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 82.8 bits (203), Expect = 1e-14
Identities = 72/261 (27%), Positives = 116/261 (43%), Gaps = 22/261 (8%)
Query: 7 GDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGRE 66
G T FWHD W G L F L++ S V + S+ + L R +
Sbjct: 929 GSRTSFWHDRWTGNMTLAAQFESLFSHSTDDLATVEQILSFGI----YDILTPRLSSAAQ 984
Query: 67 LEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWH 126
+ ++ L L LT ++ + + +G + + Y P P + IW
Sbjct: 985 NDLQE-LQTILQNFSLTN---ESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKF--IWD 1038
Query: 127 SFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSL 186
P +K FAW ++ DR +++ NLLK++++ + A C +C+ ET HL F+C F++
Sbjct: 1039 CRMPLKIKLFAWLLVRDRLSTKLNLLKKKIVQT---ATCDICSTTDETADHLSFNCPFAI 1095
Query: 187 SVWQGCLHWLGCSFIQP-SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVF 245
S WQ LH IQP + +LS + + R S ++ W +W R++VVF
Sbjct: 1096 SFWQ-ALH------IQPIINETKYLSQLKAPAT-IPTRHFQSFFMLCFWVLWNHRHDVVF 1147
Query: 246 RGGAANIYSVLELVKRRSWQW 266
RG +I S L+ S W
Sbjct: 1148 RGRPPSIASCLQRGISESSLW 1168
>ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28875978|gb|AAO59987.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28269466|gb|AAO38009.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1349
Score = 78.2 bits (191), Expect = 3e-13
Identities = 73/264 (27%), Positives = 106/264 (39%), Gaps = 13/264 (4%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
TKI + +G FW+D+W + +Y L+++K N + E HW +
Sbjct: 1084 TKITVGNGIKISFWNDNWKDGQSPKDIAPAIYRLAKRKSNSLKK----ELEDNHWLAMLH 1139
Query: 60 RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
E+E L L V L G D W + G YS SAY L + +
Sbjct: 1140 PITSLVEIEELIQLGGLLQNVNLVAGQTDDISWRWTANGQYSAKSAY--LAQFQGSNALI 1197
Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
+W +FA F W +L R + ENLL+R D C+LCN E HL
Sbjct: 1198 EFTPLWSAFAEPKHHFFGWLILHQRTLTAENLLRRHWP---CDWICSLCNSAFEDAAHLA 1254
Query: 180 FSCTFSLSVWQGCLHWLGCSFIQ---PSSARDHLSHFRFGINKLQQRLALSIWLAVIWSV 236
C F+++VW W+ Q + D S F + + L + W+V
Sbjct: 1255 KECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLGALITTWWNV 1314
Query: 237 WLARNEVVFRGGAANIYSVLELVK 260
WL RN +F+ + N V LVK
Sbjct: 1315 WLERNRRIFQQISKNELQVAILVK 1338
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 77.4 bits (189), Expect = 4e-13
Identities = 57/197 (28%), Positives = 90/197 (44%), Gaps = 23/197 (11%)
Query: 85 GVPDAWVWMPSNVGIYSVNSAYHFL------QEPTLPDTDEA-----LVSIWHSFAPSNV 133
G DA W+ ++ G YSV S YH L Q +LP +E +IW AP +
Sbjct: 451 GANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKI 510
Query: 134 KGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVW-QGC 192
K F WR + + NL +R++IT D C C + E HLLF C S +W Q
Sbjct: 511 KHFWWRSAHNALPTAGNLKRRRLIT---DDTCQRCGEASEDVNHLLFQCRVSKEIWEQAH 567
Query: 193 LHWLGCSFIQPSSARDHLSHFRFGINKLQQ--RLALSIWLAVIWSVWLARNEVVFRGGAA 250
+ + +S +L I KL Q R +S++ + W +W RN+++F
Sbjct: 568 IKLCPGDSLMSNSFNQNLE----SIQKLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRW 623
Query: 251 NIYSVLE--LVKRRSWQ 265
+I ++ L+ ++ W+
Sbjct: 624 SIPDSIQKALIDQQQWK 640
>ref|XP_470963.1| OSJNBa0094O15.6 [Oryza sativa (japonica cultivar-group)]
gi|21741576|emb|CAD39338.1| OSJNBa0094O15.6 [Oryza
sativa (japonica cultivar-group)]
Length = 699
Score = 77.4 bits (189), Expect = 4e-13
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 13/264 (4%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
TKI + +G T FW+D+W+ + +Y L+++K N + E HW +
Sbjct: 434 TKITVGNGIKTSFWNDNWMDGQSPKDIAPAIYRLAKRKSNSLKK----ELEDNHWLEMLH 489
Query: 60 RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
E+E L L + L G D W + G YS SAY + + T+
Sbjct: 490 PITSLVEIEELIQLGGLLQHINLVAGQTDDISWRWTANGQYSAKSAYLAQFQGSNALTE- 548
Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
+W +FA + F W +L R + ENLL+R D +LCN E HL
Sbjct: 549 -FTPLWSAFAEPKHRFFGWLILHQRTLTAENLLRRHWP---CDWIRSLCNSAFEDAAHLA 604
Query: 180 FSCTFSLSVWQGCLHWLGCSFIQ---PSSARDHLSHFRFGINKLQQRLALSIWLAVIWSV 236
C F+++VW W+ Q + D S F + + L + W+V
Sbjct: 605 KECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLRALITTWWNV 664
Query: 237 WLARNEVVFRGGAANIYSVLELVK 260
WL RN +F+ + N V LVK
Sbjct: 665 WLERNRRIFQQISKNELQVAFLVK 688
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 77.4 bits (189), Expect = 4e-13
Identities = 73/284 (25%), Positives = 118/284 (40%), Gaps = 23/284 (8%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
TKI + G+ T FW W+ + +Y +S+ + + SW H
Sbjct: 907 TKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDLTLDAG 966
Query: 57 LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
L + L+ L +A+ V L PD VW ++ G Y+ +SAYH Q P+
Sbjct: 967 L---SITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 1022
Query: 117 TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
T+ + IW +AP K AW ++ +R + + L R + C LC ET F
Sbjct: 1023 TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAF 1078
Query: 177 HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
HL+ C ++ +W+ W G ++P+ + S ++ GI K R S+
Sbjct: 1079 HLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 1135
Query: 229 WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
L V+W +W RN +F +L +K + W A K
Sbjct: 1136 ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1179
>gb|AAP52472.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37531766|ref|NP_920185.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|21321762|gb|AAM47297.1| Putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|18657018|gb|AAL78105.1| Putative
non-LTR retroelement reverse transcriptase [Oryza
sativa]
Length = 362
Score = 77.0 bits (188), Expect = 6e-13
Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 77 LGTVQLTKGVPDAW--VWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVK 134
L +V L +G D W +W N+ YS Y P LV IW + +K
Sbjct: 163 LDSVHLNEGFGDHWSYIW---NIDKYSAQRLYKMNYSCLQPS--RLLVWIWKTKCVIKIK 217
Query: 135 GFAWRVLLDRFASRENLLKRQVITSLADAQCALC-NDYVETGFHLLFSCTFSLSVWQGC- 192
FAW + LDRF +R+ L +R D C LC D ET H+ F+C +SL WQ
Sbjct: 218 VFAWLLSLDRFNTRDMLDRRHCAKENDDLTCVLCYGDLRETKLHIFFACPYSLRCWQLLG 277
Query: 193 LHW-LGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFR 246
HW L +F Q L+ RFG+ L I+ W +W RN ++F+
Sbjct: 278 FHWFLNLNFFQMVV----LARNRFGMKGF-----LEIFFIAAWYIWKQRNGMIFQ 323
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 75.5 bits (184), Expect = 2e-12
Identities = 80/319 (25%), Positives = 125/319 (39%), Gaps = 55/319 (17%)
Query: 2 KILKSGDVTDFWHDDWLGTGCLRGAF--YRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
+++ +G+ T+ W D WL G R + L N+ + + ++ L W+ K L
Sbjct: 876 RLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTR----NWNLKKL-- 929
Query: 60 RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYH----------FL 109
EL EK + + L D++ W +N G+Y+V S Y F
Sbjct: 930 -----TELFHEKDVQLIMHQRPLISS-EDSYCWAGTNNGLYTVKSGYERSSRETFKNLFK 983
Query: 110 QEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCN 169
+ P + +W +K F W+ L A + L R + T AD C C
Sbjct: 984 EADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRT--ADG-CLFCK 1040
Query: 170 DYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQP------SSARDHLSHF-----RFGIN 218
+ +ET HLLF C F+ VW S IQ +S +++H FGI
Sbjct: 1041 EEIETINHLLFQCPFARQVW-------ALSLIQAPATGFGTSIFSNINHVIQNSQNFGIP 1093
Query: 219 KLQQRLALSIWLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK---GFS 275
+ + +S WL +W +W RN+ +F+G ++ W A K G S
Sbjct: 1094 RHMR--TVSPWL--LWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVS 1149
Query: 276 YSSSDWFSNP---LLCILG 291
S W P L C +G
Sbjct: 1150 PSEHKWNPPPAGELKCNIG 1168
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 75.5 bits (184), Expect = 2e-12
Identities = 70/243 (28%), Positives = 101/243 (40%), Gaps = 15/243 (6%)
Query: 6 SGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGR 65
+G T+FW D W+G L+ + +Y + K V+ + G W+ + RR L R
Sbjct: 465 NGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQM--CLEGDWYIEL--RRSLGER 520
Query: 66 ELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIW 125
+L L + + L K D +W + G Y + Y L + D+ + +W
Sbjct: 521 DLNEWNDLHNTPREIHL-KEERDCIIWKLTKNGFYKAKTLYQALSFGGV--KDKVMQDLW 577
Query: 126 HSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFS 185
S P VK W +L R + L K + S C LC E HL+F C S
Sbjct: 578 RSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGS---PNCKLCGQ-TEDVDHLMFRCHIS 633
Query: 186 LSVWQGCLHWLGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAV-IWSVWLARNEVV 244
+W G I PSS D L + I K Q+ L LA W++WL RN+ V
Sbjct: 634 QFMWCCYRDAFGWDNI-PSSREDLLE--KLNIQKDGQKSVLLACLAAGTWAIWLMRNDWV 690
Query: 245 FRG 247
F G
Sbjct: 691 FNG 693
>ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|54290304|dbj|BAD61304.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 385
Score = 75.1 bits (183), Expect = 2e-12
Identities = 65/282 (23%), Positives = 104/282 (36%), Gaps = 26/282 (9%)
Query: 7 GDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPL---- 62
G FW WL L+ +Y S++K + + + W + L
Sbjct: 116 GTKVSFWDSGWLQGRRLKDVAPLVYAASKKKTSTLQQASLSDQ--------WMQDLDLPE 167
Query: 63 -VGRELEWEKGLLDALGTVQ---LTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTD 118
G +E L++ VQ L + D W ++ G Y+ SAY T
Sbjct: 168 NTGWSIELIDQLIEVWSVVQNLHLIEHEEDKITWKLTSHGEYTTTSAYKAQLLGTTATNF 227
Query: 119 EALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHL 178
L IW +AP K FAW ++ +R + L R + C LC ET HL
Sbjct: 228 NNL--IWKPWAPHKCKTFAWLIIQNRVWTSNRLATRGWPNG---SICPLCRHRQETAIHL 282
Query: 179 LFSCTFSLSVWQGCLHWLGCSFIQPS-----SARDHLSHFRFGINKLQQRLALSIWLAVI 233
L C ++ +W W C + PS S ++ ++ L V
Sbjct: 283 LAECRYTRRIWGAIAEWTACEQLNPSLWHQASTVSEWWEATANTKDAPKKALRTLTLLVA 342
Query: 234 WSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMKGFS 275
W +W RN F+ ++ S+L +K + W+ A ++ S
Sbjct: 343 WEIWNERNRRTFQQKELSMGSLLAKIKEEAKSWSLAGVRDLS 384
>ref|NP_910231.1| Similar to Arabidopsis thaliana chromosome II BAC F9O13 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006248) [Oryza sativa (japonica
cultivar-group)]
Length = 1223
Score = 74.7 bits (182), Expect = 3e-12
Identities = 57/205 (27%), Positives = 87/205 (41%), Gaps = 12/205 (5%)
Query: 75 DALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYH--FLQEPTLPDTDEALVSIWHSFAPSN 132
DA+ QL+ GV D W + YS S Y FL + + D +WH+ P+
Sbjct: 1020 DAVLPTQLSSGVEDHLAWRWTGDQCYSTQSTYRAFFLGQHSFACAD----LLWHAKGPAK 1075
Query: 133 VKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVWQGC 192
K F W R + + L KR + + A C C +ET H+L C F+ VW
Sbjct: 1076 CKFFLWFAFQQRCWTADLLQKRGIDSHSA---CPFCAQKLETANHILIDCVFARQVWLRV 1132
Query: 193 LH---WLGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFRGGA 249
+ W S ++ S +D S R + + S+ L V W +W RN VF
Sbjct: 1133 MSPPGWAALSPLRGSWLQDWWSSSRACLPEHHCSGFDSLVLLVSWQLWKERNSRVFDSAL 1192
Query: 250 ANIYSVLELVKRRSWQWNKANMKGF 274
A++ V+E + W+ A++ F
Sbjct: 1193 ASVAVVMESTRSEGQLWSLADVAFF 1217
>gb|AAX96297.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 74.3 bits (181), Expect = 4e-12
Identities = 71/248 (28%), Positives = 107/248 (42%), Gaps = 20/248 (8%)
Query: 1 TKILKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRR 60
+K++ +G+ T FW D W+G L F LYN++ K V L + G KF R
Sbjct: 34 SKVIGNGEKTLFWEDSWIGGKPLNEQFPNLYNITLTKHITVAKLK--QKGINCIKFT-RD 90
Query: 61 PLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEA 120
GR +W K + + G VQL + W + G +VNS Y L+ L
Sbjct: 91 LSGGRLRDWHK-ICTSWGDVQLKDNCNNKLRWNLTKDG--TVNSFYKALK---LQQVHFP 144
Query: 121 LVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLF 180
IW P +K F W +R +++NL KR D +C LC D ET HL F
Sbjct: 145 QKKIWKFRTPLKIKVFLWLFTKNRILTKDNLYKRG--WRKGDKKCQLC-DREETVQHLFF 201
Query: 181 SCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRFGINKLQQR---LALSIWLAVIWSVW 237
+ +W + + + A D + F + KL + L + A+IW++W
Sbjct: 202 DRPLARLMWNTAI-----CVLNLNPALDSQNIFGDWLEKLDKNMKDLVMVGMAAIIWAIW 256
Query: 238 LARNEVVF 245
+RN+ F
Sbjct: 257 KSRNKACF 264
>ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultivar-group)]
gi|38344107|emb|CAE01714.2| OSJNBb0050O03.4 [Oryza sativa
(japonica cultivar-group)]
Length = 1199
Score = 74.3 bits (181), Expect = 4e-12
Identities = 75/282 (26%), Positives = 112/282 (39%), Gaps = 17/282 (6%)
Query: 3 ILKSGDVTDFWHDDWLGTGCLRGAFYRLYNL--SRQKWNCVNTLGSWEHGRWHWKFLWRR 60
IL G T FW D W+ + L + R + +C G + W R
Sbjct: 905 ILGDGQSTLFWTDRWIDGRSIASIAPDLLHAVPPRFRGSCTVAAGLANNS---WVGDIRG 961
Query: 61 PLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYH--FLQEPTLPDTD 118
L + + DA+ QL+ G D VW + YS SAY FL + + +
Sbjct: 962 ALTVPVISQFLLVWDAVLHTQLSPGAEDHLVWRWTGDQCYSARSAYQAFFLGQHSFACAN 1021
Query: 119 EALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHL 178
+WH P+ K F W R + + L KR + + A CA +ET H+
Sbjct: 1022 ----LLWHVKGPAKCKFFLWFAFQQRCWTADLLQKRGIDSHSAGPFCA---QELETANHI 1074
Query: 179 LFSCTFSLSVWQGCLHWLGCSFIQP---SSARDHLSHFRFGINKLQQRLALSIWLAVIWS 235
L C F+ VW L G + + P S +D S R + + S+ L V W
Sbjct: 1075 LIDCVFTRQVWLRVLSPPGWAALSPPRGSWLQDWWSSSRVCLPEHLHSGFDSLVLLVSWQ 1134
Query: 236 VWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMKGFSYS 277
+W RN VF A++ VLE ++ W+ A++ F S
Sbjct: 1135 LWKERNSKVFDSALASVVVVLESIRSEGQLWSLASVTFFGIS 1176
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 74.3 bits (181), Expect = 4e-12
Identities = 71/284 (25%), Positives = 116/284 (40%), Gaps = 23/284 (8%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
TKI + G+ T FW W+ + +Y +S+ + + SW H
Sbjct: 741 TKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDL---TL 797
Query: 57 LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
+ L+ L +A+ V L PD VW ++ G Y+ +SAYH Q P+
Sbjct: 798 DAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 856
Query: 117 TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
T+ + IW +AP K AW ++ +R + + L R + C LC ET
Sbjct: 857 TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAL 912
Query: 177 HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
HL+ C ++ +W+ W G ++P+ + S ++ GI K R S+
Sbjct: 913 HLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 969
Query: 229 WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
L V+W +W RN +F +L +K + W A K
Sbjct: 970 ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1013
>ref|NP_908456.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 537
Score = 73.6 bits (179), Expect = 6e-12
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 6 SGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGR 65
+G+ +FWHD WL C + +NL+++K V T E W +R+
Sbjct: 96 NGEKINFWHDKWLQNTCPKDIAPLCFNLAKRKQRSVKT----ELTNNSWLLSFRQITTIE 151
Query: 66 ELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIW 125
E+ L L VQL D W + G YS NSAY F + + D SIW
Sbjct: 152 EISDLVQLGGMLQNVQLLPQTNDDITWNLNESGSYSANSAYLFQFQGSFSSID--FHSIW 209
Query: 126 HSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFS 185
A ++ F W +L + + +NLL+R + C+LC + E HL C F
Sbjct: 210 RCPAEPKMRFFGWLILHQKTLTAQNLLRRHWPCNWI---CSLCGEAFEDTNHLFNVCPFF 266
Query: 186 LSVW 189
VW
Sbjct: 267 RKVW 270
>ref|NP_912382.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|29893670|gb|AAP06924.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1143
Score = 73.6 bits (179), Expect = 6e-12
Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 23/284 (8%)
Query: 1 TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
TKI + G+ T FW W+ + +Y +S+ + + SW H
Sbjct: 861 TKITVGDGNTTRFWDSAWINGQRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDL---TL 917
Query: 57 LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
+ L+ L +A+ V L PD VW ++ G Y+ +SAYH Q P+
Sbjct: 918 DAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 976
Query: 117 TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
T+ + IW +AP K AW ++ +R + + L R + C LC ET
Sbjct: 977 TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAL 1032
Query: 177 HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
HL+ C ++ +W+ W G +P+ + S ++ GI K R S+
Sbjct: 1033 HLVAMCRYTKRIWRLVATWAGYQQFEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 1089
Query: 229 WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
L V+W +W RN +F +L +K + W A K
Sbjct: 1090 ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1133
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 73.2 bits (178), Expect = 8e-12
Identities = 71/260 (27%), Positives = 107/260 (40%), Gaps = 18/260 (6%)
Query: 12 FWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGRELEWEK 71
FW D W G L F +Y + Q+ V+ +G G +RR ELE
Sbjct: 1303 FWKDTWFGNCPLMTLFPAIYRVCNQQEILVSQVGQGGPGC----LSFRRSFGPEELEEWN 1358
Query: 72 GLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWHSFAPS 131
L + + + L+ D W + Y+ S Y L + D + +W P
Sbjct: 1359 DLKEIIDQIVLSD-THDKLNWGLNANKKYTTRSLYRALTFRGIGDVN---AKMWGCPCPM 1414
Query: 132 NVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVWQG 191
K F L DR S E L K+ S C LC + +ET H+LF+C + VW
Sbjct: 1415 KHKHFLSLALRDRIQSAEQLKKKNWEGS---EFCQLCGE-LETTNHILFNCPMARFVWCV 1470
Query: 192 CLHWLGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFRGGAAN 251
C L +FI P ++ + + R+ LS+ AV W++W+ RN ++FR
Sbjct: 1471 CRDTLRWNFI-PRNSDEFFLMCDGAPDLCSVRITLSLLAAVCWNLWITRNNMIFRDKL-- 1527
Query: 252 IYSVLEL---VKRRSWQWNK 268
+YS L + + QW K
Sbjct: 1528 VYSPLAILFQITSNLVQWKK 1547
>gb|AAP51826.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37530474|ref|NP_919539.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920089|gb|AAM08521.1| Putative retroelement [Oryza
sativa]
Length = 335
Score = 72.4 bits (176), Expect = 1e-11
Identities = 56/187 (29%), Positives = 82/187 (42%), Gaps = 12/187 (6%)
Query: 78 GTVQLTKGVPDAWVWMPSNVGIYSVNSAYH--FLQEPTLPDTDEALVSIWHSFAPSNVKG 135
G QL+ GV D VW ++ YS SAY F + + D +WH+ P+ K
Sbjct: 150 GQCQLSPGVRDRLVWCWTSDQRYSARSAYQAFFFGQHSFACAD----LLWHAKGPAKCKF 205
Query: 136 FAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHW 195
F W R + + LLKR + + A C +ET H+L C F+ VW L
Sbjct: 206 FLWFAFQRRCWTADLLLKRGLDSHSASP---FCGQELETANHILLDCIFARQVWLRVLSP 262
Query: 196 LGCSFIQP---SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFRGGAANI 252
LG + + P S +D R G+ + S+ L V W +W RN VF +++
Sbjct: 263 LGWTTLSPPRGSCLQDWWPSSRVGLPGHLRASFDSMVLLVSWQLWKERNSRVFDSALSSV 322
Query: 253 YSVLELV 259
VLE +
Sbjct: 323 SEVLESI 329
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.138 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,030,636
Number of Sequences: 2540612
Number of extensions: 23956283
Number of successful extensions: 73080
Number of sequences better than 10.0: 239
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 72624
Number of HSP's gapped (non-prelim): 321
length of query: 291
length of database: 863,360,394
effective HSP length: 127
effective length of query: 164
effective length of database: 540,702,670
effective search space: 88675237880
effective search space used: 88675237880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0303.2